RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11396
(829 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 525 bits (1354), Expect = e-173
Identities = 139/428 (32%), Positives = 233/428 (54%), Gaps = 25/428 (5%)
Query: 114 NDDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICK 173
+++ I G+SG+ P++ N+++FW+NL+ G + V+ RW + +
Sbjct: 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTD-DDRRWKAGLYGLPRR--------- 52
Query: 174 KMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFV 233
G L+D+ FD FF + P +A MDPQ RL L+ + I D G NP SL G+ GV+V
Sbjct: 53 -SGKLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWV 111
Query: 234 GCAVSDYNKLIT-DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIA 292
G + S+ ++ ++ DP+ Y+++G +++ R+S+F + +GP +A+DTACSSSL+A+
Sbjct: 112 GVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQ 171
Query: 293 HACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVG 352
+A ++ G A+ GG+ ++ P+ ++ + GMLSP+G C +FD NG+ EGV
Sbjct: 172 NAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVV 231
Query: 353 VLMLKKLKDAKKDGDDIYCIIKGWGVNQDG-KTNGITAPNTKSQIRLQTKIYKKFNINPN 411
++L K A++ +Y I G N DG K G+T P+ Q +L +Y+ + P
Sbjct: 232 AVLLTKKSLARR----VYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPE 287
Query: 412 DIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIK 471
+ +EAHGTGTK+GDP E + + + +GS KSN+GH A+G+ + K
Sbjct: 288 SFEYIEAHGTGTKVGDPQELNGITRALCA--TRQEPLLIGSTKSNMGHPEPASGLAALAK 345
Query: 472 IILSLKHKVLPPTINYNILNEHIKLENS-PFFINTKCKSWDIKNKKKRMAAINSFGFSGT 530
++LSL+H + P ++++ N I + + + INSFGF G+
Sbjct: 346 VLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPV-----RGGNVGINSFGFGGS 400
Query: 531 NAHIVLME 538
N HI+L
Sbjct: 401 NVHIILRP 408
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 550 bits (1418), Expect = e-172
Identities = 143/427 (33%), Positives = 231/427 (54%), Gaps = 25/427 (5%)
Query: 115 DDIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKK 174
+++ I G+SG+ P++ N+++FW NL+ G + V+ RW + +
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVT-ADDRRWKAGLYGLPRR---------- 50
Query: 175 MGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVG 234
MG L+D+ FD FF + +A MDPQ R+ L+ + I D G NP SL G+ GV+VG
Sbjct: 51 MGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVG 110
Query: 235 CAVSDYNKLIT-DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAH 293
+ SD ++ ++ DP+ Y+++G +++ R+S+F + +GP + IDTACSSSL+A+
Sbjct: 111 VSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQS 170
Query: 294 ACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGVGV 353
A ++ G A+ GG+ ++ P+ ++ K GMLS DG C SFD G+ E V
Sbjct: 171 AYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVA 230
Query: 354 LMLKKLKDAKKDGDDIYCIIKGWGVNQDG-KTNGITAPNTKSQIRLQTKIYKKFNINPND 412
++L K A++ +Y I G N DG K G+T P+ Q +L +Y +P
Sbjct: 231 VLLTKKSLARR----VYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPES 286
Query: 413 IQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKI 472
++ +EAHGTGTK+GDP E + + + +GS KSN+GH A+GV +IK+
Sbjct: 287 LEYIEAHGTGTKVGDPQELNGIVNALCA--TRREPLLIGSTKSNMGHPEPASGVAALIKV 344
Query: 473 ILSLKHKVLPPTINYNILNEHIK-LENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTN 531
+LSL+H V P ++Y+ N I L++ + + + INSFGF G+N
Sbjct: 345 LLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPI-----RGGNVGINSFGFGGSN 399
Query: 532 AHIVLME 538
H++L
Sbjct: 400 VHVILQP 406
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 507 bits (1309), Expect = e-167
Identities = 155/427 (36%), Positives = 254/427 (59%), Gaps = 3/427 (0%)
Query: 114 NDDIAIIGISGQFP-KANNVKKFWNNLLIGRNCVSKIPSTR-WIIDDFYDSDKNAIGKTI 171
+D IAI+ ++ + P N ++ W L G +S P+ R W + + D + G +
Sbjct: 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSY 64
Query: 172 CKKMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGV 231
K G L+D FD FF +SP EA MDPQQRL L+ W +E+AG +P SL G+ GV
Sbjct: 65 VDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGV 124
Query: 232 FVGCAVSDYNKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAI 291
F+G A Y + + Y++ G + ++ R+SY + L+GP +++DTACSSSLVA+
Sbjct: 125 FLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVAL 184
Query: 292 AHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGV 351
A +SL G S +A+ GG ++ TP + + S+ L+ DG +F A+GF EGV
Sbjct: 185 HLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSEGV 244
Query: 352 GVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPN 411
+++L++L +A+++G ++ +++G +NQDG +NG++AP+ +Q R+ + + + P
Sbjct: 245 TLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPG 304
Query: 412 DIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIK 471
D+ +EAHGTGT LGDPIE AL +++ + LGSVKSNIGH+ AAGV G++K
Sbjct: 305 DVDAVEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLK 364
Query: 472 IILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTN 531
++L+L++ LP T++ H+ + + + W + ++ R AA+++FG SGTN
Sbjct: 365 VVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPWR-RGERTRRAAVSAFGISGTN 423
Query: 532 AHIVLME 538
AH+++ E
Sbjct: 424 AHVIVEE 430
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 491 bits (1265), Expect = e-161
Identities = 157/427 (36%), Positives = 248/427 (58%), Gaps = 14/427 (3%)
Query: 114 NDDIAIIGISGQFP-KANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTIC 172
+ IAI+G++ +FP ++ + FW + G + +++ P+ R ++ D +A
Sbjct: 38 GEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRG-----WEPDPDA------ 86
Query: 173 KKMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVF 232
+ G L FD FF ISP EA MDPQQR+ L+ W +E AG++P SL GS GVF
Sbjct: 87 RLGGMLAAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVSLRGSATGVF 146
Query: 233 VGCAVSDY-NKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAI 291
G DY + P Y G + S+ RV+Y L L+GP + +DTACSS L A+
Sbjct: 147 TGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTAL 206
Query: 292 AHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRANGFVPGEGV 351
A +SL +ALAGGV ++++P + G L+ DG C F + A+GF EG
Sbjct: 207 HLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGA 266
Query: 352 GVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPN 411
GVL+L++L A+++G + +++G VNQDG +NG+TAP+ +Q R+ + + +
Sbjct: 267 GVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAG 326
Query: 412 DIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIK 471
D+ +EAHGTGT+LGDPIE AL ++ + +GSVKSNIGH+ AAGV G++K
Sbjct: 327 DVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMK 386
Query: 472 IILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTN 531
+L+L+H +P T++++ + I+ + + ++ +SW ++ R A ++SFG SGTN
Sbjct: 387 AVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQARSWP-AGERPRRAGVSSFGISGTN 445
Query: 532 AHIVLME 538
AH+++ E
Sbjct: 446 AHVIVEE 452
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 176 bits (450), Expect = 1e-48
Identities = 90/443 (20%), Positives = 157/443 (35%), Gaps = 76/443 (17%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N ++FW L GR +I F+D + +
Sbjct: 15 PGGNGTRQFWELLTSGRTATRRI--------SFFDPSPYR-----SQVAAEADF---DPV 58
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTC----IEDAGYNPFSLSGSLCGVFVGCAVSDYNK 242
P E + MD Q C +G +P +L + GV +G AV+
Sbjct: 59 AEG-FGPRELDRMDR----ASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAA--- 110
Query: 243 LITDPKMYNAYALMGESVSILPARVSYFL-----------------NLQGPCLAIDTACS 285
+ + Y + G + A +S + +GP + T C+
Sbjct: 111 ATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCT 170
Query: 286 SSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS-----PDGHC 335
S L ++ +A ++ G++ + AG TP + + + + P+
Sbjct: 171 SGLDSVGNAVRAIEEGSADVMFAGAADTPITP-----IVVACFDAIRATTARNDDPEHAS 225
Query: 336 YSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--K 393
FD +GFV EG + +L+ A G I+ I G+ + +T +
Sbjct: 226 RPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNA--YHMTGLKADGR 283
Query: 394 SQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSV 453
+ + DI + AHG+GT+ D E A + + + + S+
Sbjct: 284 EMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARR---TPVSSI 340
Query: 454 KSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIK 513
KS +GHS A G + + +L+L+H V+PPT N + L+ P +
Sbjct: 341 KSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVP---LEA------R 391
Query: 514 NKKKRMAAINSFGFSGTNAHIVL 536
+K R GF G + +VL
Sbjct: 392 ERKLRSVLTVGSGFGGFQSAMVL 414
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 174 bits (444), Expect = 1e-47
Identities = 110/434 (25%), Positives = 187/434 (43%), Gaps = 63/434 (14%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N V+ W LL G++ +S I +D+ A K G ++D F+
Sbjct: 30 PVGNTVESTWKALLAGQSGISLI--DH------FDTSAYA-----TKFAGLVKD---FNC 73
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSLCGVFVGCAV----- 237
IS E MD F+Q ++D+G + + G +G +
Sbjct: 74 EDI-ISRKEQRKMDA----FIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGL 128
Query: 238 --SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
++ L+ P+ + + + V+++ ++ L+GP ++I TA +S + I HA
Sbjct: 129 IEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHA 188
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS-----PDGHCYSFDQRANG 344
+ G++ + +AGG +TP + G LS P +D+ +G
Sbjct: 189 ARIIAYGDADVMVAGGAEKASTP-----LGVGGFGAARALSTRNDNPQAASRPWDKERDG 243
Query: 345 FVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIRLQTKI 402
FV G+G G+L+L++ + AKK G IY + G+G++ D +T+P N
Sbjct: 244 FVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANA 301
Query: 403 YKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSAT 462
+ I + I + AHGT T GD E +A+ F + + + S KS GH
Sbjct: 302 LRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASR---VLVSSTKSMTGHLLG 358
Query: 463 AAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAI 522
AAG + I IL+L+ + +PPTIN + +E L+ P + + +
Sbjct: 359 AAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP---HEARQVSGM-----EYTLC 410
Query: 523 NSFGFSGTNAHIVL 536
NSFGF GTN ++
Sbjct: 411 NSFGFGGTNGSLIF 424
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 173 bits (440), Expect = 3e-47
Identities = 107/434 (24%), Positives = 170/434 (39%), Gaps = 64/434 (14%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N ++ +W L+ GRN + I +D+ A C+ G ++D FD
Sbjct: 19 PIGNTLQDYWQGLMEGRNGIGPI--------TRFDASDQA-----CRFGGEVKD---FDA 62
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSLCGVFVGCAV----- 237
F + EA+ MD F I DA L+ GV +G +
Sbjct: 63 TQF-LDRKEAKRMDR----FCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKV 117
Query: 238 --SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
L+ P + + + ++ + L +GP TAC++ AI A
Sbjct: 118 LEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDA 177
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS-----PDGHCYSFDQRANG 344
+ G +K + GG TP +S +G LS P FD+ +G
Sbjct: 178 FRLVQNGYAKAMICGGTEAAITP-----LSYAGFASARALSFRNDDPLHASRPFDKDRDG 232
Query: 345 FVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIRLQTKI 402
FV GEG G+L+L++L+ A G IY + G+ + D ITAP + + R
Sbjct: 233 FVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDA--YHITAPVPDGRGATRAIAWA 290
Query: 403 YKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSAT 462
K + P + + AHGT T D E A+ ++ +Y+ A+ S KS GH
Sbjct: 291 LKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYN---IAVSSTKSMTGHLLG 347
Query: 463 AAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAI 522
+G I + ++++ +PPTIN + L+ P + +A
Sbjct: 348 GSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP---GQS------RALIVDVALS 398
Query: 523 NSFGFSGTNAHIVL 536
NSFGF G N +
Sbjct: 399 NSFGFGGHNVTLAF 412
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 173 bits (441), Expect = 3e-47
Identities = 115/433 (26%), Positives = 177/433 (40%), Gaps = 63/433 (14%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N+VK W N L G N + KI D++ + G L++ F+
Sbjct: 40 PIGNDVKTTWENALKGVNGIDKI--------TRIDTEPYS-----VHLAGELKN---FNI 83
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSLCGVFVGCAV----- 237
I EA MD F Q ++DA + + GV++G +
Sbjct: 84 EDH-IDKKEARRMDR----FTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMET 138
Query: 238 --SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
+ +L+ P+ + + + + +VS L +GP A TAC++ +I A
Sbjct: 139 FEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEA 198
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS----PDGHCYSFDQRANGF 345
+ G++ + GG T M+ +G LS + C F + +GF
Sbjct: 199 FKIVQRGDADAMITGGTEAPITH-----MAIAGFSASRALSTNDDIETACRPFQEGRDGF 253
Query: 346 VPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--KSQIRLQTKIY 403
V GEG G+L+++ L+ A+ G +IY I G+G D ITAP + R
Sbjct: 254 VMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDA--YHITAPAPEGEGGSRAMQAAM 311
Query: 404 KKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATA 463
I P D+Q L AHGT T +GD E +A+ +F + + H + S KS GH A
Sbjct: 312 DDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKH---LKVSSTKSMTGHLLGA 368
Query: 464 AGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAIN 523
G I I LS+K + PTI+ + L+ P N ++ A N
Sbjct: 369 TGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVP---NEA------QDLDITYAMSN 419
Query: 524 SFGFSGTNAHIVL 536
S GF G NA +V
Sbjct: 420 SLGFGGHNAVLVF 432
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 172 bits (439), Expect = 4e-47
Identities = 107/433 (24%), Positives = 177/433 (40%), Gaps = 63/433 (14%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N+ + W N G N V+K+ TR + D K L+D FD
Sbjct: 16 PIGNDAETSWENAKKGVNGVAKM--TR------LNPDDFP-----VKIAAELKD---FDV 59
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSLCGVFVGCAV----- 237
+ + EA MD F + ++D+G + + GV++G +
Sbjct: 60 EKY-LEKKEARKMDR----FTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMET 114
Query: 238 --SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
+ Y + + + + + + +VS +G TAC+++ +I A
Sbjct: 115 FETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDA 174
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS----PDGHCYSFDQRANGF 345
+ G++ + GG T MS +G LS P+ C FD+ +GF
Sbjct: 175 FKVIERGDADAMITGGAEAPITK-----MSLAGFTANKALSLNPDPETACRPFDKDRDGF 229
Query: 346 VPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIRLQTKIY 403
+ GEG G+++L++ + AK G IY I G+G D ITAP N + R
Sbjct: 230 IIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDA--YHITAPAPNGEGAARAMKMAI 287
Query: 404 KKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATA 463
+ P+ + + AHGT T D E +A+ F + + A+ S KS GH+ A
Sbjct: 288 DDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKK---LAISSTKSMTGHTLGA 344
Query: 464 AGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAIN 523
+G I I +L+++ ++ PTI+ +E L+ P N + + N
Sbjct: 345 SGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVP---NEA------REANVNVVISN 395
Query: 524 SFGFSGTNAHIVL 536
SFGF G NA +V
Sbjct: 396 SFGFGGHNATLVF 408
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 168 bits (428), Expect = 9e-46
Identities = 91/435 (20%), Positives = 156/435 (35%), Gaps = 69/435 (15%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
+ + L GRN V ++ W + + L F
Sbjct: 18 ALGSRWDEIEAALKAGRNAVRRM--PDW----------DYFESLHTRLAAPLPG---FAQ 62
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWT----CIEDAGYNPF-SLSGSLCGVFVGCAV---- 237
+ M + DAG+ S+S GV G +
Sbjct: 63 PAD-WPRKKTRSMGR----VSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSGSVE 117
Query: 238 ---SDYNKLIT-DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAH 293
+ L + + + + VS F +L+G + +AC+S AI +
Sbjct: 118 PIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGY 177
Query: 294 ACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGM--LS-----PDGHCYSFDQRANGFV 346
A +++ +G + LAGG ++ P + + S P FD + +G V
Sbjct: 178 AYENIAMGKQTLMLAGGAEELSGPAV---AVFDTLYATSTRNDEPHLTPRPFDAKRDGLV 234
Query: 347 PGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKF 406
GEG L+L++ + AK G I+ I G+G N DG +T P + R +
Sbjct: 235 VGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDG--AHMTQPTASTMARAMQLALEDA 292
Query: 407 NINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGV 466
++ N I + AHGT T GD E +A +F + + S+KS +GH+ A G
Sbjct: 293 KLDANAIAYVNAHGTSTDRGDVAESQATARTFGE---R---MPISSLKSYVGHTLGACGA 346
Query: 467 IGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWD-IKNKKKRM---AAI 522
+ I +K PT+N ++ C D I+ + + + +
Sbjct: 347 LEAWWTIEMMKRNWYAPTLNLTEVDP-------------ACAPLDYIRGEARAIDAEYVM 393
Query: 523 -NSFGFSGTNAHIVL 536
N+F F G N ++
Sbjct: 394 SNNFAFGGINTSLIF 408
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 168 bits (428), Expect = 9e-46
Identities = 110/434 (25%), Positives = 167/434 (38%), Gaps = 66/434 (15%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P + F L G++ V I +D+ + ++ DP
Sbjct: 14 PIGVGQEAFHKAQLAGKSGVRPI--------TRFDASALP-----VRIAAEVD----VDP 56
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSLCGVFVGCAV----- 237
+ + E +D F+Q +EDAG P L G VG +
Sbjct: 57 GAY-LDRKELRRLDR----FVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMET 111
Query: 238 --SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
+ + P + + + ++ A ++ GP + TAC++ A+ A
Sbjct: 112 WEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSA 171
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS-----PDGHCYSFDQRANG 344
+ LG + + LAGG TP M+ M LS P+ F +G
Sbjct: 172 LRMIQLGEADLVLAGGTEAAITP-----MAIGAFAVMRALSTRNEEPEKASRPFTLSRDG 226
Query: 345 FVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKSQIRLQTKI 402
FV GEG GVL+L+ + AKK G IY + G+G + D + IT P K +
Sbjct: 227 FVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADA--HHITEPHPEGKGAALAMARA 284
Query: 403 YKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSAT 462
K I P + + AHGT T +GD E A+ F + + S KS IGH
Sbjct: 285 LKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKR---LMVSSTKSMIGHLLG 341
Query: 463 AAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAI 522
AAG + I + +L H V+PPTIN + + L+ P + + K A
Sbjct: 342 AAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP----------EPREAKVDYALS 391
Query: 523 NSFGFSGTNAHIVL 536
NSF F G NA +
Sbjct: 392 NSFAFGGHNAVLAF 405
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 166 bits (422), Expect = 1e-44
Identities = 100/440 (22%), Positives = 172/440 (39%), Gaps = 67/440 (15%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P W+ L+ G + + + ++ + + F+
Sbjct: 33 PLGVGTHLVWDRLIGGESGIVSL--VGEEYKSI----PCSVAAYV-PRGSDEGQ---FNE 82
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFS-LSGSLCGVFVGCAVSDYN 241
F +S S+ + M ++D+G++P S GV +G +
Sbjct: 83 QNF-VSKSDIKSMSS----PTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPL- 136
Query: 242 KLITDPKMYNAYALMGES----VS----------ILPARVSYFLNLQGPCLAIDTACSSS 287
+ VS + +VS L+GP A+ TAC++
Sbjct: 137 -----EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTG 191
Query: 288 LVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS----PDGHCYSF 338
A+ + + G++ + +AGG +P +S +G LS P C F
Sbjct: 192 AHAVGDSFRFIAHGDADVMVAGGTDSCISP-----LSLAGFSRARALSTNSDPKLACRPF 246
Query: 339 DQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--KSQI 396
+ +GFV GEG VL+L++ + A + IY + G+G++ D ITAP+ + +
Sbjct: 247 HPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDA--GHITAPDPEGEGAL 304
Query: 397 RLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSN 456
R K + P +I + AH T T LGD E +A+ F +Y A+ S K
Sbjct: 305 RCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYA---LAVSSTKGA 361
Query: 457 IGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKK 516
GH AAG + L+ ++ LPPT+N + L ++ K + W + +
Sbjct: 362 TGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLN----YVPLKAQEWKTEKRF 417
Query: 517 KRMAAINSFGFSGTNAHIVL 536
+ NSFGF GTNA + +
Sbjct: 418 IGLT--NSFGFGGTNATLCI 435
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 166 bits (422), Expect = 1e-44
Identities = 104/446 (23%), Positives = 171/446 (38%), Gaps = 66/446 (14%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKI----PSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIE 182
P V+ W L+ G + + + ++ + + + + +
Sbjct: 13 PLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPG 72
Query: 183 IFDPLFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFS-LSGSLCGVFVGCAV 237
FD + ++ + F+ + DA + P GV +G +
Sbjct: 73 EFDEALW----LNSKAVAN----FIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGI 124
Query: 238 SDYNKLITDPKMYNAYALMGES----VS----------ILPARVSYFLNLQGPCLAIDTA 283
+ A L+ E +S + VS QGP A TA
Sbjct: 125 GSI------CDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 284 CSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS------PD 332
C++ +I A + G++ + +AGG +S +G LS P
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDA-----LSVAGFSRSRALSTKFNSSPQ 233
Query: 333 GHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP-- 390
FD +GFV GEG GV++L++ + AK+ G IY + G+G++ D + IT P
Sbjct: 234 EASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDA--HHITQPPE 291
Query: 391 NTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCAL 450
+ K + T+ ++ + PN I + AH T T +GD +E A+ F++ + A
Sbjct: 292 DGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHAT-SGTLAF 350
Query: 451 GSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSW 510
S K GH AAG + I IL++ H V P T+N + P T
Sbjct: 351 SSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPL--TTS---- 404
Query: 511 DIKNKKKRMAAINSFGFSGTNAHIVL 536
K R A NSFGF GTNA ++
Sbjct: 405 --KKMLVRTAMSNSFGFGGTNASLLF 428
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 163 bits (416), Expect = 6e-44
Identities = 96/437 (21%), Positives = 156/437 (35%), Gaps = 75/437 (17%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
+N ++ +L ++ +S+ Y C+ G+ + D
Sbjct: 35 SIGSNTEEVTASLREAKSGISRAEE--------YAELGFR-----CQVHGAPD----IDI 77
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWT----CIEDAGYNPFSLSGSLCGVFVGCA------ 236
+ + I DAG +S G+ +G
Sbjct: 78 ESL-VDRRAMRFHGR----GTAWNHIAMDQAIADAGLTEEEVSNERTGIIMGSGGPSTRT 132
Query: 237 -VSDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
V + PK +A+ S A ++ F ++G +I +AC++S I +A
Sbjct: 133 IVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNA 192
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG-----MLS-----PDGHCYSFDQRANG 344
+ + G AGG D+ +S M S P ++D+ +G
Sbjct: 193 YEMIQYGKQDRMFAGG-----CEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDG 247
Query: 345 FVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIR-----LQ 399
FV G GVL+L+ L+ A G IY I G+G DG + AP+ + IR L
Sbjct: 248 FVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDG--YDMVAPSGEGAIRCMKMALS 305
Query: 400 TKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGH 459
T + I + H T T GD E EA+ + F + + KS GH
Sbjct: 306 TV--------TSKIDYINPHATSTPAGDAPEIEAIRQIFGA---GDVCPPIAATKSLTGH 354
Query: 460 SATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRM 519
S A GV I +L +++ + + + L+ + P I N +
Sbjct: 355 SLGATGVQEAIYSLLMMQNNFICESAHIEELDP--AFADMPIVRKR------IDNVQLNT 406
Query: 520 AAINSFGFSGTNAHIVL 536
NSFGF GTNA +V
Sbjct: 407 VLSNSFGFGGTNATLVF 423
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 163 bits (415), Expect = 1e-43
Identities = 100/447 (22%), Positives = 161/447 (36%), Gaps = 80/447 (17%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P + W L+ G + + ++ I + +G T+ + + + FDP
Sbjct: 36 PLGCGKELVWQRLIGGGSGLRRL--GDDIAGEL----SAKVGGTV--QDVAEDPEGGFDP 87
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFS-LSGSLCGVFVGCAVSDYN 241
+ E MD F+Q + +AG+ P + V + +
Sbjct: 88 ERS-VPHKELRKMDR----FIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGF- 141
Query: 242 KLITDPKMYNAYALMGES----VS----------ILPARVSYFLNLQGPCLAIDTACSSS 287
P + A + +S + ++S +GP TAC++S
Sbjct: 142 -----PGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAAS 196
Query: 288 LVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS------PDGHCY 336
+ AI A + G + + LAGG +S G LS P
Sbjct: 197 VQAIGDAMRMIRTGEADVVLAGGAEAAFDK-----VSLGGFAAARALSTGFSEEPVRASR 251
Query: 337 SFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--KS 394
FD+ +GFV GEG +++++ L A G I G+G D +TA
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADA--YHMTAGPDDGSG 309
Query: 395 QIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVK 454
+R + ++ P + + AH T T +GD E EAL F + A+ S K
Sbjct: 310 AMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGP----AISSTK 365
Query: 455 SNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWD-IK 513
S GH AAG I IL+L+ VLP T+N + D I
Sbjct: 366 SATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDP-------------AADGLDLIG 412
Query: 514 NKKKRM---AAI-NSFGFSGTNAHIVL 536
+ + A+ N FGF G NA ++
Sbjct: 413 PAARHVPVEIALSNGFGFGGVNASVLF 439
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 162 bits (413), Expect = 2e-43
Identities = 101/433 (23%), Positives = 164/433 (37%), Gaps = 66/433 (15%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P N ++FWN+L G+ + I T+ +D ++D F
Sbjct: 35 PIGNTPEEFWNSLATGKIGIGGI--TK------FDHSDFD-----VHNAAEIQD---FPF 78
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSLCGVFVGCAV----- 237
+ + D + + A + +L+ GV V +
Sbjct: 79 DKY-FVKKDTNRFDN----YSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKE 133
Query: 238 --SDYNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHA 294
+L PK L ++ V+ G C +I+TACSSS AI A
Sbjct: 134 IEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 295 CDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS----PDGHCYSFDQRANGF 345
S+ G + L GG TP + +G + LS P FD+ NGF
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITP-----FAIAGFQALTALSTTEDPTRASIPFDKDRNGF 248
Query: 346 VPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--KSQIRLQTKIY 403
V GEG G+L+L+ L+ A+K G I + G+G D +T+P+ + I+
Sbjct: 249 VMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDA--YHMTSPHPEGQGAIKAIKLAL 306
Query: 404 KKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATA 463
++ I+P + + AHGT T + E A+ + S KS GH A
Sbjct: 307 EEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVL------GKEVPVSSTKSFTGHLLGA 360
Query: 464 AGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAIN 523
AG + I I +++H +P T + ++++I+ K+ A N
Sbjct: 361 AGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVY---GQG------LEKEIPYAISN 411
Query: 524 SFGFSGTNAHIVL 536
+FGF G NA +
Sbjct: 412 TFGFGGHNAVLAF 424
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 161 bits (411), Expect = 2e-43
Identities = 88/428 (20%), Positives = 159/428 (37%), Gaps = 58/428 (13%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P + +W+ +L GR+ + + TR +D + G ++D F
Sbjct: 21 PNGLGLAPYWSAVLDGRHGLGPV--TR------FDVSRYP-----ATLAGQIDD---FHA 64
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAV-------SD 239
I DP RL L ++DA +P SL+ GV A +
Sbjct: 65 PDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHRE 123
Query: 240 YNKLITD-PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACDSL 298
+ KL ++ PK + Y ++ ++S ++GP A+ + L A+ HA ++
Sbjct: 124 FRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTI 183
Query: 299 ILGNSKIALAGGVYIINTPDIHIKMSKSG-----MLS----PDGHCYSFDQRANGFVPGE 349
G + + ++GGV P +S PD FD+RA G+VPGE
Sbjct: 184 RRG-TPLVVSGGVDSALDP-----WGWVSQIASGRISTATDPDRAYLPFDERAAGYVPGE 237
Query: 350 GVGVLMLKKLKDAKKDG-DDIYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNI 408
G +L+L+ A+ G D Y + G D + + ++ +
Sbjct: 238 GGAILVLEDSAAAEARGRHDAYGELAGCASTFDP--APGSGRPAGLERAIRLAL-NDAGT 294
Query: 409 NPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIG 468
P D+ ++ A G G D E A+ F + + K+ G + G +
Sbjct: 295 GPEDVDVVFADGAGVPELDAAEARAIGRVFGREGV-----PVTVPKTTTGRLYSGGGPLD 349
Query: 469 MIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFS 528
++ ++SL+ V+ PT + ++ ++ R A + + G
Sbjct: 350 VVTALMSLREGVIAPTAGVTSVPREYGIDLVL---GEP------RSTAPRTALVLARGRW 400
Query: 529 GTNAHIVL 536
G N+ VL
Sbjct: 401 GFNSAAVL 408
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 160 bits (407), Expect = 9e-43
Identities = 111/442 (25%), Positives = 191/442 (43%), Gaps = 72/442 (16%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
P A+ V++ W LL G + ++ T + +DD I I G+ F+P
Sbjct: 22 PLASGVEETWKRLLAGESGARRV--TEFEVDDL----ACQIACRIPVGDGTNGT---FNP 72
Query: 187 LFFNISPSEAEYMDPQQRLFLQ----NCWTCIEDAGYNPFSLSGSL-CGVFVGCAVSDYN 241
+ P E +DP F+ ++DAG++P + + GV +G +
Sbjct: 73 DLH-MDPKEQRKVDP----FIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGI- 126
Query: 242 KLITDPKMYNAYALMGES----VS----------ILPARVSYFLNLQGPCLAIDTACSSS 287
+ A + + +S + VS L+GP ++ TAC++
Sbjct: 127 -----EGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATG 181
Query: 288 LVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS------PDGHCY 336
AI A + G++ + +AGG + +S +G LS P
Sbjct: 182 THAIGDAARLIAFGDADVMVAGGTESPVSR-----ISLAGFAACKALSTERNDDPTAASR 236
Query: 337 SFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP--NTKS 394
+D+ +GFV GEG G+++L++L+ A G IY + G+G++ D ITAP + +
Sbjct: 237 PYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDA--FHITAPTESGEG 294
Query: 395 QIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVK 454
R K+ I P++I + AHGT T + D IE A+ + + ++ S K
Sbjct: 295 AQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAAAK---ISMSSTK 350
Query: 455 SNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKN 514
S+IGH AAG + L+++ + P T+N + +++ P + +
Sbjct: 351 SSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVP---HKP------RE 401
Query: 515 KKKRMAAINSFGFSGTNAHIVL 536
+K +A NSFGF GTNA +VL
Sbjct: 402 RKIDVALSNSFGFGGTNASLVL 423
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 159 bits (404), Expect = 1e-42
Identities = 104/446 (23%), Positives = 172/446 (38%), Gaps = 83/446 (18%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
NN ++ +L GR+ ++ G+++ D
Sbjct: 14 SIGNNQQEVLASLREGRSGITFSQE--------LKDSGMR-----SHVWGNVK----LDT 56
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTC----IEDAGYNPFSLSGSL-CGVFVGCA----- 236
I +M + I DAG +P + + G+ G
Sbjct: 57 TGL-IDRKVVRFMSD----ASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPR 111
Query: 237 --VSDYNKLITD--PKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIA 292
V + + K Y + S + A ++ + G +I +AC++S I
Sbjct: 112 FQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 171
Query: 293 HACDSLILGNSKIALAGGVYIINTPDIHIKMSK--SGM--LS------PDGHCYSFDQRA 342
+A + + LG I AGG ++ +M+ M LS P+ ++D
Sbjct: 172 NAVEQIQLGKQDIVFAGG-----GEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHR 226
Query: 343 NGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIR----- 397
+GFV G G++++++L+ A G IY I G+G DG + AP+ + +R
Sbjct: 227 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDG--ADMVAPSGEGAVRCMKMA 284
Query: 398 LQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNI 457
+ I L +HGT T +GD E A+ E F S A+ + K+
Sbjct: 285 MHGV--------DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSP-----AISATKAMT 331
Query: 458 GHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKK 517
GHS AAGV I +L L+H + P+IN L+E I T+ ++
Sbjct: 332 GHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG----LNIVTETTDRELT---- 383
Query: 518 RMAAI-NSFGFSGTNAHIVLMEKIKN 542
+ NSFGF GTNA +V M K+K+
Sbjct: 384 --TVMSNSFGFGGTNATLV-MRKLKD 406
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 159 bits (406), Expect = 2e-42
Identities = 101/441 (22%), Positives = 173/441 (39%), Gaps = 80/441 (18%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
A + + W LL ++ + + +++F + G L + +
Sbjct: 40 ALATDAETTWKLLLDRQSGIRTL--DDPFVEEFDLP---------VRIGGHLLE----EF 84
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAVSDYNKLITD 246
++ E M QR+ E+AG + + V +G +
Sbjct: 85 DHQ-LTRIELRRMGYLQRMSTVLSRRLWENAGSPE--VDTNRLMVSIGTGLGSA------ 135
Query: 247 PKMYNAYALMGES----VS----------ILPARVSYFLNLQGPCLAIDTACSSSLVAIA 292
++ +Y M VS A V + + + +AC+S AIA
Sbjct: 136 EELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIA 195
Query: 293 HACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG------MLS-----PDGHCYSFDQR 341
A ++LG + A+ GGV + +G ++S P G C FD+
Sbjct: 196 RAWQQIVLGEADAAICGGVETRIEA-----VPIAGFAQMRIVMSTNNDDPAGACRPFDRD 250
Query: 342 ANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--KSQIRLQ 399
+GFV GEG +L+++ + AK G +I I G + DG + AP+ +
Sbjct: 251 RDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDG--FHMVAPDPNGERAGHAI 308
Query: 400 TKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGH 459
T+ + + P DI + AH TGT++GD E A+ + ++ A+ + KS +GH
Sbjct: 309 TRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGG---NR--PAVYAPKSALGH 363
Query: 460 SATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRM 519
S A G + I +L+L+ +V+PPT+N L+ I L+ + +
Sbjct: 364 SVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVA-------------GEPRPG 410
Query: 520 ---AAI-NSFGFSGTNAHIVL 536
AI NSFGF G N I
Sbjct: 411 NYRYAINNSFGFGGHNVAIAF 431
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 158 bits (402), Expect = 4e-42
Identities = 97/436 (22%), Positives = 164/436 (37%), Gaps = 72/436 (16%)
Query: 127 PKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMGSLEDIEIFDP 186
+ +++ W LL G + + + + + + K G L+D
Sbjct: 24 SISPDIESTWKGLLAGESGIHAL--EDEFVTKWDLA---------VKIGGHLKD----PV 68
Query: 187 LFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCAVSDYNKLITD 246
+ + M QR+ E AG + V VG +
Sbjct: 69 DSH-MGRLDMRRMSYVQRMGKLLGGQLWESAGSPE--VDPDRFAVVVGTGLGGA------ 119
Query: 247 PKMYNAYALMGES----VS----------ILPARVSYFLNLQGPCLAIDTACSSSLVAIA 292
++ +Y LM VS A + L + + +ACSS AIA
Sbjct: 120 ERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIA 179
Query: 293 HACDSLILGNSKIALAGGVYIINTPDIHIKMSKSG---M--LS-----PDGHCYSFDQRA 342
HA +++G++ +A+ GGV + + M +S P+ FD+
Sbjct: 180 HAWRQIVMGDADVAVCGGVEGPIEA-----LPIAAFSMMRAMSTRNDEPERASRPFDKDR 234
Query: 343 NGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT--KSQIRLQT 400
+GFV GE +++++ + AK G + G G+ D + AP R T
Sbjct: 235 DGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDA--FHMVAPAADGVRAGRAMT 292
Query: 401 KIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCALGSVKSNIGHS 460
+ + ++P DI + AHGT T +GD E A+ + A+ + KS +GHS
Sbjct: 293 RSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCD---Q---AAVYAPKSALGHS 346
Query: 461 ATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMA 520
A G + + +L+L+ V+PPT+NY + I L+ + R A
Sbjct: 347 IGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVA---GEP------RYGDYRYA 397
Query: 521 AINSFGFSGTNAHIVL 536
NSFGF G N +
Sbjct: 398 VNNSFGFGGHNVALAF 413
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 151 bits (384), Expect = 1e-37
Identities = 57/416 (13%), Positives = 117/416 (28%), Gaps = 88/416 (21%)
Query: 184 FDPLFFNISPSEAEYMDPQQRLFLQNCWTC------IEDAGYNPFS-----LSGSLCGVF 232
++ + IS +DP + +G + S G
Sbjct: 994 WNAKTYGISDDIISQVDP----ITL--FVLVSVVEAFIASGITDPYEMYKYVHVSEVGNC 1047
Query: 233 VGCAVSDYNKLITDPKMYNAYALMGESVS-ILPAR---------VSYFLNLQGPCLAIDT 282
G + + M+ + IL ++ GP
Sbjct: 1048 SGSGMG---GVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVG 1104
Query: 283 ACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIH----IK-MSKS-----GMLSPD 332
AC++S+ ++ ++++ G ++I + GG +K S + +P
Sbjct: 1105 ACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1164
Query: 333 GHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP-- 390
NGF+ +G G+ ++ + A K G IY I+ D G + P
Sbjct: 1165 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPAP 1222
Query: 391 --------------------NTKSQIRLQTKIYKKFNIN---PNDIQLLEAHGTGTKLGD 427
N + R + + ++ I N+++ L+ D
Sbjct: 1223 GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSED 1282
Query: 428 PIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINY 487
EF + +++ L + + G+ + + +
Sbjct: 1283 QNEFLL---ERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGV 1339
Query: 488 NILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINS-FG-FSGTNAHIVLMEKIK 541
+ H +TK N K A IN + + V+ K
Sbjct: 1340 --ASFHG--------TSTK------ANDKNESATINEMMKHLGRSEGNPVIGVFQK 1379
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 110 bits (277), Expect = 2e-27
Identities = 78/210 (37%), Positives = 128/210 (60%), Gaps = 12/210 (5%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ ++V+G+ FS + + QYKV+I+TGY NYF+ G +K + + R T + +
Sbjct: 28 SPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASK-------EFLIRKTRGEVEVL 80
Query: 646 PLY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTL 700
L C+IP+IAAMQGH+ G G +GL+ D+ +FS+ESVY + +M+YGFTP ++L
Sbjct: 81 DLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSL 140
Query: 701 IFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKEL 760
I ++ G L++E+++T ++GKEL ERGI PV+ R+ VL Y+ +L +K++ + L
Sbjct: 141 ILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSL 200
Query: 761 ELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
K++ S ++ K EL +H TF
Sbjct: 201 VALKQHLSADIKAKFPEAIKKELEIHQVTF 230
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 108 bits (271), Expect = 4e-24
Identities = 46/306 (15%), Positives = 88/306 (28%), Gaps = 54/306 (17%)
Query: 184 FDPLFFNISPSEAEYMDPQQRLFLQNCWT------CIEDAGYNPFSLSG-----SLCGVF 232
+D + + + +DP + + +G S G
Sbjct: 1168 WDARRYGVPEDIIQQVDP----VTL--YVLVSVAEALLSSGITDPYEFYKYVHLSEVGNC 1221
Query: 233 VGCAVSDYNKLITDPKMYNAYALMGESVS-ILPAR---------VSYFLNLQGPCLAIDT 282
+G V MY L IL L+ GP
Sbjct: 1222 IGSGVGG---TSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVG 1278
Query: 283 ACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIH----IK-MSKSGMLS-----PD 332
AC++++ ++ D+++ G +++ L GG + + S + P
Sbjct: 1279 ACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPG 1338
Query: 333 GHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNT 392
NGF+ +G GV ++ + A + G IY I+ D G + P
Sbjct: 1339 EMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDK--IGRSVPAP 1396
Query: 393 -KSQIRLQTKIYKKFNINPNDI-----------QLLEAHGTGTKLGDPIEFEALCESFNK 440
+ + + F DI Q ++ L E A+ ++
Sbjct: 1397 GQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSE 1456
Query: 441 FSYHKN 446
+
Sbjct: 1457 EDGPFD 1462
Score = 98.5 bits (245), Expect = 5e-21
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 6/134 (4%)
Query: 404 KKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNK-FSYHKNFCALGSVKSNIGHSAT 462
+ + +D+ + HGT T D E + +C+ N K GH
Sbjct: 1508 ATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKG 1567
Query: 463 AAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAI 522
AAG + + L ++P N + +++ ++ + + + K+ IK ++
Sbjct: 1568 AAGAWMLNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKA-----FSV 1622
Query: 523 NSFGFSGTNAHIVL 536
SFGF A +
Sbjct: 1623 TSFGFGQKGAQAIG 1636
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 101 bits (252), Expect = 7e-22
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 6/152 (3%)
Query: 386 GITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHK 445
G +I + + +D+ + HGT TK D E + E +
Sbjct: 1509 GNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSE 1568
Query: 446 -NFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFIN 504
N K GH AAG M + L ++P N + +++ ++ + +
Sbjct: 1569 GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPS 1628
Query: 505 TKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
K+ ++ +I SFGF ++
Sbjct: 1629 KTLKTDGVRA-----VSITSFGFGQKGGQAIV 1655
Score = 100 bits (251), Expect = 1e-21
Identities = 46/365 (12%), Positives = 104/365 (28%), Gaps = 70/365 (19%)
Query: 184 FDPLFFNISPSEAEYMDPQQRLFLQNCWT------CIEDAGYNPFS-----LSGSLCGVF 232
++ + IS +DP + +G + S G
Sbjct: 1193 WNAKTYGISDDIISQVDP----ITL--FVLVSVVEAFIASGITDPYEMYKYVHVSEVGNC 1246
Query: 233 VGCAVSDYNKLITDPKMYNAYALMGESVS-ILPAR---------VSYFLNLQGPCLAIDT 282
G + + M+ + IL ++ GP
Sbjct: 1247 SGSGMG---GVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVG 1303
Query: 283 ACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIH-----------IKMSKSGMLSP 331
AC++S+ ++ ++++ G ++I + GG ++ + G +P
Sbjct: 1304 ACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHG-RTP 1362
Query: 332 DGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDG--------- 382
NGF+ +G G+ ++ + A K G IY I+ D
Sbjct: 1363 AEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPG 1422
Query: 383 -----------KTNGITAPNTKSQIRLQTKIYKKFNIN---PNDIQLLEAHGTGTKLGDP 428
+ +PN + R + + ++ I N+++ L+ D
Sbjct: 1423 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQ 1482
Query: 429 IEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYN 488
EF + +++ L + + G+ + + +
Sbjct: 1483 NEFLL---ERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGV- 1538
Query: 489 ILNEH 493
+ H
Sbjct: 1539 -ASFH 1542
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 95.0 bits (237), Expect = 1e-21
Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 30/215 (13%)
Query: 586 NSTVVKGITDAFSYINS--SVQYKVIIITGYENYFACGG----------------TKEGL 627
N+ + I A + S+ + ++TG +Y++ G K
Sbjct: 51 NTEMYHEIMRALKAASKDDSI---ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNA 107
Query: 628 LKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPY 687
+ +++ + F D P+IA + G A+G + D S+ + + +P+
Sbjct: 108 VLLREFVGCFID---------FPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPF 158
Query: 688 MRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLK 747
G +P S+ FP+ + E+L + E +G+ V P
Sbjct: 159 SHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWT 218
Query: 748 LAKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
K + L L + K+ ++KL + E
Sbjct: 219 RLKAFAKLPPNALRISKEVIRKREREKLHAVNAEE 253
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 94.7 bits (236), Expect = 2e-21
Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 10/205 (4%)
Query: 586 NSTVVKGITDAFSYINS-SVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKS- 642
N+ V+K I +A + + K+++ + + F CG + ++ + + E
Sbjct: 49 NTEVIKEIVNALNSAAADDS--KLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVD 106
Query: 643 YCMPLY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
K P++ ++ G AIG G ++ CD +E++ +Q+PY +G +P
Sbjct: 107 TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGC 166
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSK 757
S++ FP+ GK + E+L + +E +G+ V + K+L+ +
Sbjct: 167 SSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNP 226
Query: 758 KELELQKKYYSHSLQKKLSTIFLHE 782
LE K +++ +L E
Sbjct: 227 IVLEECKALVRCNIKLELEQANERE 251
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 91.1 bits (227), Expect = 1e-20
Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 24/219 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-------------TKEGLLKIQK 632
+ DAF I+ +V+I+TG + + + + +K
Sbjct: 49 TGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKK 108
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQ-SPYMRYG 691
+ D ++PVI+A+ G A+ L D + SE +V+Q P++ G
Sbjct: 109 VLQNLLD---------IEVPVISAVNGAALLHS-EYILTTDIILASENTVFQDMPHLNAG 158
Query: 692 FTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
PG G +++P G R LFT + ++ E + VLP+ +++ + ++A+
Sbjct: 159 IVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIART 218
Query: 752 LSLLSKKELELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
L+ L + + L++ ++ + L + T
Sbjct: 219 LAKQPTLNLRYTRVALTQRLKRLVNEGIGYGLALEGITA 257
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 91.1 bits (227), Expect = 2e-20
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 28/214 (13%)
Query: 586 NSTVVKGITDAFSYINS-SVQYKVIIITGYENYFACGG----------------TKEGLL 628
N V++ + A S + K+++++ + F CG + +
Sbjct: 31 NPEVMREVQSALSTAAADDS--KLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAE 88
Query: 629 KIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYM 688
I+ ++ F K P+I A+ G AIG G ++ CD +E++ +Q+PY
Sbjct: 89 AIRNFVNTFIQ---------FKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYT 139
Query: 689 RYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
+G +P ST++FP+ G + E+L + + +E +G+ V +
Sbjct: 140 TFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVR 199
Query: 749 AKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
K+L+ + LE K +++ +L E
Sbjct: 200 IKELASCNPVVLEESKALVRCNMKMELEQANERE 233
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 89.6 bits (223), Expect = 3e-20
Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 22/204 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG------------TKEGLLKIQKG 633
T+ + + +A + ++I G F+ G + L +
Sbjct: 29 GPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFEL 87
Query: 634 ISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFT 693
R PV+ A GHAI G + D+ + + Q+ + G T
Sbjct: 88 SYRLLS---------YPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMT 138
Query: 694 PGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
+ + R ++ A F G+ G + + VL + + A++ +
Sbjct: 139 IPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFA 198
Query: 754 LLSKKELELQKKYYSHSLQKKLST 777
L+++ K K +
Sbjct: 199 GLNQQAHNATKLRARAEALKAIRA 222
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 89.6 bits (223), Expect = 4e-20
Identities = 34/203 (16%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG------TKEGLLKIQKGISRFTD 639
++ +++ ++ + + +++TG F GG T + + T
Sbjct: 31 DTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITS 90
Query: 640 EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
PVIA + G A+G G ++ L CD + + S +Q + R G P G++
Sbjct: 91 ---------LPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGAS 141
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
+ P G+ + + TA + E G+ + + + + +S
Sbjct: 142 ALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLA 201
Query: 760 LELQKKYYSHSLQKKLSTIFLHE 782
K+ + + +L + E
Sbjct: 202 FGWTKRALAAATLAELEPVQAIE 224
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 89.2 bits (222), Expect = 7e-20
Identities = 37/208 (17%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-----------TKEGLLKIQKGI 634
++ + A + + +++TG F+ G + L + + +
Sbjct: 25 TGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVV 84
Query: 635 SRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTP 694
+ + P++ A+ G A GAG ++ L+ D + + + + + ++R G P
Sbjct: 85 EALSG---------LEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVP 135
Query: 695 GAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSL 754
+G + + P+ G ++E+L + +E G+ V+P ++++ +L LAK+L+
Sbjct: 136 DSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQ 195
Query: 755 LSKKELELQKKYYSHSLQKKLSTIFLHE 782
+ L KK + + L+ E
Sbjct: 196 GPTRAYALTKKLLLETYRLSLTEALALE 223
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 89.2 bits (222), Expect = 8e-20
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG-------GTKEGLLKIQKGISRFT 638
+ + + A+ ++ +VI++TG F G T S
Sbjct: 32 TVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQ 91
Query: 639 DEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGS 698
+ PVIAA+ GHAIG G + L D I +EE Y P +R+G P A +
Sbjct: 92 PA-----AFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALA 146
Query: 699 TLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
P+ G ++ E+L T + F + E G++ LP +VL +L++A +
Sbjct: 147 HWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDI 200
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 89.3 bits (222), Expect = 8e-20
Identities = 38/218 (17%), Positives = 64/218 (29%), Gaps = 21/218 (9%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG------------GTKEGLLKIQKG 633
+ + + + II +F+ G T + + K
Sbjct: 34 EGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKW 93
Query: 634 ISRFTDEKSYCMPLY--CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVY-QSPYMRY 690
+S F Y + +I + G AIG A+ CD + VY P+
Sbjct: 94 VSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANL 153
Query: 691 GFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSL---- 746
G G+T+ P +FG + E L FK + E G +
Sbjct: 154 GLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKV 213
Query: 747 --KLAKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
+L +K+ L KK + + E
Sbjct: 214 LEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVE 251
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 87.7 bits (218), Expect = 2e-19
Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 23/213 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG------------TKEGLLKIQKG 633
ST + F I + KV+I+TG F E + + Q+
Sbjct: 41 TSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRL 100
Query: 634 ISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVY-QSPYMRYGF 692
++ ++PVIAA+ G A + + D + +E + + P+ G
Sbjct: 101 LNNLLS---------IEVPVIAAVNGPVTNAP-EIPVMSDIVLAAESATFQDGPHFPSGI 150
Query: 693 TPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
PG G+ +++P G R L T E + + G VL +++L + +LA+ +
Sbjct: 151 VPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGI 210
Query: 753 SLLSKKELELQKKYYSHSLQKKLSTIFLHELTM 785
+ +K + L++ + L
Sbjct: 211 AEKPLLARRYARKVLTRQLRRVMEADLSLGLAH 243
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 86.8 bits (216), Expect = 5e-19
Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ I A + + +V+++ G E+ F G K+ + +Q + +
Sbjct: 30 YGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPP- 88
Query: 645 MPLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
L P+I A++G AIG G + L D +++Q P++ G +P G++
Sbjct: 89 FVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGAS 148
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
+ ++ G + E+LFTA +F + + G+ ++ + A+ L+ L
Sbjct: 149 QLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLAS 206
Query: 760 LELQKK 765
L+ K
Sbjct: 207 LKQTKA 212
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 86.4 bits (215), Expect = 6e-19
Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 22/210 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG-------------GTKEGLLKIQK 632
N + A Q V+++TG F+ G EG +
Sbjct: 31 NEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRG 90
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
I P+I A+ G +G G + + D S + + P+ G
Sbjct: 91 LIKALAG---------FPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGV 141
Query: 693 TPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
P A S+ + PQ G+ + +L ++ +E G+ + +++L + + A+ L
Sbjct: 142 APEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEIL 201
Query: 753 SLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
+ L K + +++ E
Sbjct: 202 AAKPISSLMAVKHTMVEPNRAQIAAASARE 231
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 86.1 bits (214), Expect = 1e-18
Identities = 40/211 (18%), Positives = 84/211 (39%), Gaps = 8/211 (3%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ + + D + I+ +V+++ G F+ GG + I R +
Sbjct: 38 GPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREA- 96
Query: 645 MPLY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
L PV++A++G A+GAG + L D ++ S + + + G G +
Sbjct: 97 RDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAA 156
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
+ +P G ++ L T G+E + G+ + +VL + +LA+ L+ ++
Sbjct: 157 ICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNA 216
Query: 760 LELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
+ K+ +H + F L + F
Sbjct: 217 IRWTKRSLNHWYR-MFGPTFETSLGLEFLGF 246
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 85.3 bits (212), Expect = 2e-18
Identities = 31/172 (18%), Positives = 73/172 (42%), Gaps = 5/172 (2%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ +G+ + + + + +++ G F+ GG+ + +++
Sbjct: 35 PPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEAR 94
Query: 646 PLY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTL 700
L PV+AA++ A+GAG A+ L D + + + ++R G G + L
Sbjct: 95 DLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVL 154
Query: 701 IFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
++P G ++ L G+E + G+ + ++V +L++A++L
Sbjct: 155 LWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 84.7 bits (210), Expect = 4e-18
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 11/178 (6%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ G A + +VI++TG F G + + +
Sbjct: 55 GPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANL 114
Query: 645 MPLY----------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTP 694
L + PVIAA+ G +G G L CD + + + + + R G
Sbjct: 115 ADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIA 174
Query: 695 GAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G + I P+ ++ ++L + F +E + G+ V+ +Q++ +L+ A+ +
Sbjct: 175 EFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDI 232
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 83.8 bits (208), Expect = 5e-18
Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 12/200 (6%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKE--GLLKIQKGISRFTDEKS 642
++ + A S + V+I+TG + F G KE ++ ++ D
Sbjct: 34 SAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPD--- 90
Query: 643 YCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIF 702
PVI A+ G A+ G + L+CD I SE + + + R G P G ++
Sbjct: 91 ------MTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRL 144
Query: 703 PQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELEL 762
PQ+ G L+R + T ++ G+ V+ +L + ++A + ++K +
Sbjct: 145 PQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRA 204
Query: 763 QKKYYSHSLQKKLSTIFLHE 782
Y + E
Sbjct: 205 LLDSYHRIDALQTGGALWAE 224
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 83.4 bits (207), Expect = 7e-18
Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ +T A + + ++ITG F G + G++ D
Sbjct: 28 TEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGE------DL-SGVTEEMDHGDVLR 80
Query: 646 PLY---------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA 696
Y + PV+AA+ G A GAG ++ L CD+ + SE++ + ++ G P A
Sbjct: 81 SRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDA 140
Query: 697 GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLS 756
G P+ G+ + E+ + +E G++ V+P + A++LS +
Sbjct: 141 GHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMP 200
Query: 757 KKELELQKKYYSHSLQKKLSTIFLHE 782
K + L K+ S + E
Sbjct: 201 TKAIGLIKRLLRESEETTFDRYLERE 226
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 83.5 bits (207), Expect = 7e-18
Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 10/206 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG----TKEGLLKIQKGISRFTDEK 641
+ ++ + DA V++I G F G +G + TD
Sbjct: 31 SRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLF 90
Query: 642 SYCMPLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA 696
C L + P IA ++G A AG + CD S + + P ++ G
Sbjct: 91 EACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTT 150
Query: 697 GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLS 756
+ + + G+ E+ T + + G+ +LP + + LA L+ +
Sbjct: 151 PAVAV-SRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARN 209
Query: 757 KKELELQKKYYSHSLQKKLSTIFLHE 782
+ L + + L+ L +
Sbjct: 210 QAPLRRGLETLNRHLELPLEQAYALA 235
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 80.7 bits (200), Expect = 3e-17
Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 17/206 (8%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG--------GTKEGLLKIQKGISRF 637
+ V+ A ++I+TG + G + + + +G +
Sbjct: 30 SPDVIIAFNAALDQAEKDR--AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLA 87
Query: 638 TDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTI-FSEESVYQSPYMRYGFTPGA 696
S P+I A GHA+ G + L DY I + ++ G T
Sbjct: 88 RRMLS------HPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHH 141
Query: 697 GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLS 756
+ R K + A F + G V+ +++ +L +A +L ++
Sbjct: 142 AGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKIN 201
Query: 757 KKELELQKKYYSHSLQKKLSTIFLHE 782
+ K L L +
Sbjct: 202 MNAHKKTKLKVRKGLLDTLDAAIEQD 227
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 82.9 bits (205), Expect = 3e-17
Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 22/189 (11%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG-------YENYFACGG-----TKEGLLKIQKG 633
V + + S V+++TG F GG + G
Sbjct: 82 RPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGD 141
Query: 634 ISRFTDE----KSYCMPLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEES-VY 683
+ D + + + + I VI + G A G G ++ + CD T+ S E +
Sbjct: 142 TADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARF 201
Query: 684 QSPYMRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLF 743
+ G G + ++ G+ +REI F + +++ + G V ++
Sbjct: 202 KQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELET 261
Query: 744 YSLKLAKKL 752
L+ A ++
Sbjct: 262 VGLQWAAEI 270
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 81.7 bits (202), Expect = 7e-17
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 649 CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQRFGK 708
C P + + G+ + G + L D I + ++ P MR P AG ++ R G
Sbjct: 156 CDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGD 212
Query: 709 ILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQKK 765
++ +LFT G + E G+++ + + +L ++++ + +L + K
Sbjct: 213 QRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAKL 269
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 80.7 bits (200), Expect = 8e-17
Identities = 43/211 (20%), Positives = 86/211 (40%), Gaps = 9/211 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG------TKEGLLKIQKGISRFTD 639
N + G+ + + + +ITG F+ GG ++ R
Sbjct: 53 NDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGR 112
Query: 640 EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
E M C+IPV+AA+ G A+G G ++ D +E + P+++ G G
Sbjct: 113 EIVLGM-ARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGP 171
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
L +P +L++E T + + E G++ V + ++ AKK+ L ++
Sbjct: 172 LTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVAD--DPVAEAIACAKKILELPQQA 229
Query: 760 LELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
+E K+ + L++ + + L+ +F
Sbjct: 230 VESTKRVLNIHLERAVLASLDYALSAESQSF 260
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 78.8 bits (195), Expect = 3e-16
Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 11/214 (5%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG---TKEGLLKIQKGISRFTDEKS 642
N ++ + A++ VI++ +F+ G + + E
Sbjct: 45 NPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESR 104
Query: 643 YCMPLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
+ + P IAA+QG I G + CD I +E++++ P + G
Sbjct: 105 RYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGV 162
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSK 757
G ++EILFT +E+ + G+ V+PR ++ + LA +++ +
Sbjct: 163 EYHGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPP 222
Query: 758 KELELQKKYYSHSLQKK-LSTIFLHELTMHDYTF 790
L K+ + +L + +H
Sbjct: 223 FALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTGH 256
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 78.4 bits (194), Expect = 4e-16
Identities = 39/207 (18%), Positives = 82/207 (39%), Gaps = 12/207 (5%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ ++ +TDA + ++ITG E+ F G +E + + KG++ D
Sbjct: 28 SVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLRE--IPLDKGVAGVRDHFRIA 85
Query: 645 MPLY---------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPG 695
+ K PV+AA+ G A G G + L D I ++ + + + G
Sbjct: 86 ALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGND 145
Query: 696 AGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLL 755
++ + G + E++ T +E K+ G+ V P+ + + K+A++L+
Sbjct: 146 TATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAA 205
Query: 756 SKKELELQKKYYSHSLQKKLSTIFLHE 782
+ K+ + + + E
Sbjct: 206 PTHLQVMAKERFHAGWMQPVEECTEFE 232
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 78.4 bits (194), Expect = 5e-16
Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 8/175 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG--------TKEGLLKIQKGISRF 637
+ T+ + + D + V+++TG + G G +Q+ I R
Sbjct: 34 SPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRRE 93
Query: 638 TDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
+ + + P IA + G G G++ + CD I ++E+ + + +G PG
Sbjct: 94 ASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNL 153
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
+ G S + T F G++ E G+ +P Q+ +++LA+ L
Sbjct: 154 VSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNL 208
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 77.6 bits (192), Expect = 6e-16
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 27/215 (12%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYEN-YFACGG----------------TKEGLL 628
++ + + +A N+ II+ YF+ G +E L
Sbjct: 29 DAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLH 88
Query: 629 KIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYM 688
+ + +A + G+A G G+ M L CD I + + +
Sbjct: 89 VLNHCVLEIFT---------SPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFH 139
Query: 689 RYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLF-YSLK 747
+ G +P G++ P+ G + +L F +E G+ + KQ L
Sbjct: 140 KMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKN 199
Query: 748 LAKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
K +S + KK ++L E
Sbjct: 200 YLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQE 234
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 77.2 bits (191), Expect = 9e-16
Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 12/175 (6%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG--------GTKEGLLKIQKGISRF 637
+S ++ + A S + + ++ + +F G + G
Sbjct: 37 DSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDP 96
Query: 638 TDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
P++ A+QG AG + L D + + + + + G P G
Sbjct: 97 WGVVQPRRS----KPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGG 152
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
ST+ FP+ G + + T EF E + V+ + L +L+ A+++
Sbjct: 153 STVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI 207
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 76.8 bits (190), Expect = 1e-15
Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 27/182 (14%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG---------GTKEGLLKIQKGISR 636
N ++ + D + I + + ++I G ++F+ G EGL+ Q
Sbjct: 41 NDGLMAALKDCLTDIPDQI--RAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRV 98
Query: 637 FTD-EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPG 695
F + C++PVIAA++G IG G + + + Y P G G
Sbjct: 99 FDKIQY-------CRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVG 151
Query: 696 AGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
G + R G +++ T + E G S ++ +L+L +
Sbjct: 152 GGGS----VRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNR 207
Query: 752 LS 753
++
Sbjct: 208 VA 209
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 76.0 bits (188), Expect = 2e-15
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
N V +G+ A ++SS V IITG F G K G + ++
Sbjct: 32 NRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKA----FVSGEAVLSERGLGF 87
Query: 645 MPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQ 704
+ + P+IAA++G A+ G + L CD + + + P ++ G GAG L P
Sbjct: 88 TNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPN 147
Query: 705 RFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
R ++ E+ T F ++ + G ++ Q L +L+LA K+
Sbjct: 148 RIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKI 195
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 75.7 bits (187), Expect = 4e-15
Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 20/211 (9%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG------------TKEGLLKIQKG 633
+ D + ++ + +++ G F GG LL +
Sbjct: 42 TFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRM 101
Query: 634 ISRFTDEKSYCMPLY-CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
+ + C PVIAA+ G A GAG + L D+ + + + + R G
Sbjct: 102 TGQVVRA------VRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGL 155
Query: 693 TPG-AGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
+ G G+ + P+ G + +L + E + G+ + + + LA++
Sbjct: 156 SGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARR 215
Query: 752 LSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
L+ K + L L+ +
Sbjct: 216 LADGPALAHAQTKALLTAELDMPLAAAVELD 246
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 75.3 bits (186), Expect = 5e-15
Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENY-FACGG----------------TKEGLL 628
V + DAFS VI++TG + F GG + +L
Sbjct: 38 TPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVL 97
Query: 629 KIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYM 688
+Q+ I PVIA ++G+A+G G + + CD TI ++ +++
Sbjct: 98 DLQRLIRI------------IPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGP 145
Query: 689 RYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
+ G + + G +REI + ++ +E + G+ V+P ++V +++
Sbjct: 146 KVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQW 205
Query: 749 AKKLSLLS 756
K++ S
Sbjct: 206 CKEIMKHS 213
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 74.6 bits (184), Expect = 7e-15
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 5/170 (2%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ + AF+ ++ + V ++ G F G K + +G
Sbjct: 36 DGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKA--MGTDRGNELHPHGPGPM 93
Query: 645 MP--LYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIF 702
P L PVIAA+ GHA+ G + L+CD + E++V R+G G T+
Sbjct: 94 GPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRL 153
Query: 703 PQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
P+ G + +++ T E + G+ V+ R Q + LA ++
Sbjct: 154 PRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEI 203
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 74.1 bits (183), Expect = 7e-15
Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 24/219 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGY-ENYFACG-------------GTKEGLLKIQ 631
+ T+ + DA + N+ + +++ G E F+ G +E + ++
Sbjct: 25 SRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVI 84
Query: 632 KGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG 691
+ P IAA+ G+AIG G+ L D + + + + P +++G
Sbjct: 85 DLYQAVLN---------VNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHG 135
Query: 692 FTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
G+ ++ G +EI++ + + V+ +L ++ A
Sbjct: 136 IGCSVGAAIL-GFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHV 194
Query: 752 LSLLSKKELELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
++ K+ + L +H F
Sbjct: 195 MASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAF 233
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 74.9 bits (185), Expect = 8e-15
Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 11/191 (5%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
V+ I+ + ++ITG F G K G
Sbjct: 49 AFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRS 108
Query: 645 MPLY---------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPG 695
M L PVIAA+ G AIG G + L CD + S+++ +++ + G T
Sbjct: 109 MELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTAS 168
Query: 696 -AGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSL 754
G + + P+ G + +I+ T + E + G+ + + +L + ++++
Sbjct: 169 ELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAG 228
Query: 755 LSKKELELQKK 765
S+ +EL K+
Sbjct: 229 FSRPGIELTKR 239
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 74.5 bits (184), Expect = 9e-15
Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 23/181 (12%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG---------GTKEGLLKIQKGISR 636
V + I A + +++ G F+ G E + +
Sbjct: 48 TRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEA 107
Query: 637 FTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA 696
+ P +AA+ G+A+GAG + L D+ + + + + + G PG
Sbjct: 108 IDAVAA------IPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGG 161
Query: 697 GSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G R G ++E++F+ F +E G+ ++ V ++ A++
Sbjct: 162 GGM----GRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRY 217
Query: 753 S 753
Sbjct: 218 L 218
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 74.1 bits (183), Expect = 1e-14
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG-------------GTKEGLLKIQK 632
N T+ + DA ++ ++ I++TG E FA G + LL
Sbjct: 35 NQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWD 94
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
+++ + P++AA+ G+A+G G + + CD I ++ + + P + G
Sbjct: 95 SLTQ------------VRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGI 142
Query: 693 TPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
PG G T QR GK + ++ T +E + G+ ++P +L +L +
Sbjct: 143 LPGLGGT----QRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAV 198
Query: 749 AKKLSLLSKKELELQKK 765
A++++ +S+ K
Sbjct: 199 AQRIARMSRPAGRAVKD 215
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 74.1 bits (183), Expect = 1e-14
Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 14/176 (7%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG---------GTKEGLLKIQKGISR 636
+ T+++ + A + + ++ G F G L + GI+
Sbjct: 34 DKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINP 93
Query: 637 FTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA 696
+ + P++ A+ G + G + L D I E + + + G P
Sbjct: 94 WQVDGRQL-----SKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFG 148
Query: 697 GSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G+T+ FP+ G + + TA F E GI ++P + + ++ +A+ +
Sbjct: 149 GATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTI 204
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 73.4 bits (181), Expect = 2e-14
Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 24/188 (12%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG----GTKEGLLKIQKGISRFTDEK 641
N + + + F I+ + ++++G F G +L+
Sbjct: 29 NRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWY 88
Query: 642 SYCMPLY----------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG 691
+ C PVIAA+ G IG G + CD ++++ +Q + G
Sbjct: 89 LRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVG 148
Query: 692 FTPGAGSTLIFPQRFGKI-----LSREILFTASEFKGKELKERGISMPVLPRKQVLF-YS 745
G+ QR K+ L E+ FTA + E + G+ V P K V+ +
Sbjct: 149 LAADVGTL----QRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAA 204
Query: 746 LKLAKKLS 753
LA +S
Sbjct: 205 FALAADIS 212
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 72.9 bits (180), Expect = 3e-14
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG-------------GTKEGLLKIQK 632
+ +++ + A I++TG E FA G L
Sbjct: 32 CNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWD 91
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
I+R K PVIAA+ G+A+G G + + CD E++ + P + G
Sbjct: 92 HITR------------IKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGT 139
Query: 693 TPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
PGAG T QR GK L+ E++ T ++ K+ G+ + P + ++ +++
Sbjct: 140 IPGAGGT----QRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQC 195
Query: 749 AKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
A+K++ SK + + K+ + + + L+ E
Sbjct: 196 AEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLE 229
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 73.0 bits (180), Expect = 3e-14
Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 23/188 (12%)
Query: 586 NSTVVKGITDAFSYI-NSSVQYKVIIITGYENYFACG-------GTKEGLLKIQKGISRF 637
NS +V+ +T A + S + I++TG F G + ++ +
Sbjct: 46 NSQLVEELTQAIRKAGDGSA--RAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAM 103
Query: 638 TDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
+PV+ A+ G AIGAG + + CD + + ++ +Q P +YG
Sbjct: 104 DA---------SPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNW 154
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSK 757
S G +R +L +A + + G++ + A +++ L+
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADA----QAWAAEIARLAP 210
Query: 758 KELELQKK 765
++ K+
Sbjct: 211 LAIQHAKR 218
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 72.5 bits (179), Expect = 3e-14
Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 7/173 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ + + A + + + +++TG F+ G + G
Sbjct: 24 SPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSL 83
Query: 645 MPLY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
M L+ P +AA+ G A+ G + L CD + EE+ ++ GF S
Sbjct: 84 MRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSV 143
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
++ + G+ ++++L T + +E K G+ + P + L + LA+++
Sbjct: 144 IL-VRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEV 195
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 72.6 bits (179), Expect = 3e-14
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 6/169 (3%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
N+ V + + DA +++ V I+TG F G K +G + + +
Sbjct: 40 NAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKA----FARGENVVVEGRGLG 95
Query: 645 MPLY-CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFP 703
P+IAA++G+A+ G + L D + + +S + P ++ G G G L P
Sbjct: 96 FTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLP 155
Query: 704 QRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
+R ++ E+ T + G+ + L ++ LA+K+
Sbjct: 156 ERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKI 204
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 72.2 bits (178), Expect = 4e-14
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 33/214 (15%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG-------------GTKEGLLKIQK 632
+ +V I A + + + +VI++TG FA G
Sbjct: 30 SRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWD 89
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
+S K P+IAA+ G A+G G+ + L CD + S + + P + G
Sbjct: 90 RLSI------------VKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGV 137
Query: 693 TPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
PGAG T QR G + E L+T + KE ++ GI V+ + ++ +++L
Sbjct: 138 MPGAGGT----QRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRL 193
Query: 749 AKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
A +L+ L L K+ ++ L E
Sbjct: 194 AGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFE 227
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 71.8 bits (177), Expect = 5e-14
Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 8/172 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDE---K 641
++ +V A+ I+ + I+TG + + GG +G + K
Sbjct: 34 STNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGK 93
Query: 642 SYCMPLYCKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
+ P+IAA+ G +G G D + E + + P ++ G PGAGS
Sbjct: 94 GLLLSHTLTKPLIAAVNGACLGGGCEMLQQ--TDIRVSDEHATFGLPEVQRGLVPGAGSM 151
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
+ ++ + E++ T E G+ V+P L + LA +
Sbjct: 152 VRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADR 203
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 72.3 bits (178), Expect = 6e-14
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 6/177 (3%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGY-ENYFACGG-----TKEGLLKIQKGISRFTD 639
VK + A + VII+TG + F GG G K G+
Sbjct: 53 RPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNV 112
Query: 640 EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
C PV+A + G++IG G + + CD TI ++ +++ + G G
Sbjct: 113 LDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGA 172
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLS 756
+ G+ +REI F ++ K+ + G+ V+P + +++ +++ S
Sbjct: 173 SYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNS 229
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 71.4 bits (176), Expect = 9e-14
Identities = 34/179 (18%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG------------GTKEGLLKIQKG 633
+ +++ + +A+ +++ + I+TG YF G + +
Sbjct: 45 SGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSR 104
Query: 634 ISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFT 693
I + K P+IAA++G AI G + D + +E + + ++
Sbjct: 105 IDALLKGRR------LKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLY 158
Query: 694 PGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
P GS + ++ ++ ++L T E KE G+ V+P Q L +L++A+ +
Sbjct: 159 PMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEII 217
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 71.4 bits (176), Expect = 9e-14
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 33/197 (16%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACG-------------GTKEGLLKIQK 632
NS V+ +T A + ++ IIITG FA G
Sbjct: 50 NSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWG 109
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
++ + P IAA+ G+A+G G + + CD I ++ + + P ++ G
Sbjct: 110 KLAA------------VRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGV 157
Query: 693 TPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
PG G + QR GK + +++ T E + G+ V+P +L +
Sbjct: 158 LPGMGGS----QRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARAT 213
Query: 749 AKKLSLLSKKELELQKK 765
A +S +S + K+
Sbjct: 214 ATTISQMSASAARMAKE 230
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 70.7 bits (174), Expect = 1e-13
Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 27/215 (12%)
Query: 586 NSTVVKGITDAFSYI-NSSVQYKVIIITGYENYFACGG------------TKEGLLKIQK 632
++ +V+ + D V +++ G F+ G +++I+
Sbjct: 32 SAELVEALIDGVDAAHREQV--PLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEM 89
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGF 692
+ R +A G GAG + C + + E+ ++ P +++G
Sbjct: 90 LLQRVAG---------SPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGL 140
Query: 693 TPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
G T F G + IL +A F E + G + Q A+
Sbjct: 141 VLG---TRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAA 197
Query: 753 SLLSKKELELQKKYYSHSLQKKLSTIFLHELTMHD 787
+ L +
Sbjct: 198 TALDPATRATLHRVLRDDHDDADLAALARSAAQPG 232
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 70.7 bits (174), Expect = 2e-13
Identities = 29/186 (15%), Positives = 67/186 (36%), Gaps = 9/186 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ ++ + +AF + + +++ F G KE ++ + + + C
Sbjct: 51 SEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKE--MRAEPSREYYEKLFARC 108
Query: 645 MPLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
+ I PVIA + G A AG + CD + + ++ + + G
Sbjct: 109 TDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGV 168
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
+ + G+ + E+L T + K G+ V+ K + + K+ +
Sbjct: 169 AL-SRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAA 227
Query: 760 LELQKK 765
+ + K
Sbjct: 228 VAMGKA 233
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 70.3 bits (173), Expect = 2e-13
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 10/181 (5%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG------YENYFACGGT----KEGLLKIQKGIS 635
V + DAF + V+++TG + F GG EG +G
Sbjct: 35 RPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTP 94
Query: 636 RFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPG 695
R + VIA + G+AIG G + L CD TI ++ +++ + G G
Sbjct: 95 RLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG 154
Query: 696 AGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLL 755
+ + G+ +REI + ++ +E + G+ V+P ++ ++ AK++
Sbjct: 155 GFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSK 214
Query: 756 S 756
S
Sbjct: 215 S 215
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 70.5 bits (173), Expect = 3e-13
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 15/183 (8%)
Query: 586 NSTVVKGITDAFSYINSSVQ-----YKVIIITGYENYFACGG-TKE-GLLKIQKGISRFT 638
++ +V IT + + + +++ + F GG L + +R
Sbjct: 61 STRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLL 120
Query: 639 DEKSYCMPLY--------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRY 690
D C+ + IA +QG+A+G G+ L C I E + P + +
Sbjct: 121 DYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLF 180
Query: 691 GFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAK 750
PG G+ QR L+++I+ + + ++L G+ V+PR Q + ++ +
Sbjct: 181 DLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIR 240
Query: 751 KLS 753
+
Sbjct: 241 ESK 243
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 69.4 bits (171), Expect = 4e-13
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 30/214 (14%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG----------TKEGLLKIQKGIS 635
+S V+ +T+ + +V++I G +F+ G K+ Q G
Sbjct: 30 SSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQV 89
Query: 636 RFTD-EKSYCMPLYCKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVYQSPYMRYGF 692
F EK C PVIAA+ G A+G G +AM C +E + P + G
Sbjct: 90 TFERVEK-------CSKPVIAAIHGAALGGGLEFAMS--CHMRFATESAKLGLPELTLGL 140
Query: 693 TPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
PG T QR GK + E++ T++ G E + G+ V + L +LK+
Sbjct: 141 IPGFAGT----QRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKV 196
Query: 749 AKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHE 782
AK+++ S + + E
Sbjct: 197 AKQIAGKSPATARAVLELLQTTKSSHYYEGVQRE 230
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 68.7 bits (169), Expect = 7e-13
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 21/179 (11%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG-YENYFACG---------GTKEGLLKIQKGIS 635
N+ V G+ DA + + +++TG + F G + G +
Sbjct: 34 NAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFA 93
Query: 636 RFTDEKSYCMPLYCKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVYQSPYMRYGFT 693
+ P IAA+ G A+G G A+ D + E + + P ++ G
Sbjct: 94 GYVRHF-------IDKPTIAAVNGTALGGGTELALA--SDLVVADERAQFGLPEVKRGLI 144
Query: 694 PGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
AG ++ + ++ +L T ++ G+ V+ VL +L LA +
Sbjct: 145 AAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAI 203
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 68.3 bits (168), Expect = 9e-13
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG-YENYFACG---------GTKEGLLKIQKGIS 635
+ +++ + + + IN +V+I+TG E F G ++ + +
Sbjct: 34 SLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRT 93
Query: 636 RFTD-EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTP 694
E+ PVIAA+ G A+G G + L CD+ I +E + P
Sbjct: 94 TMEMVEQ-------LPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIP 146
Query: 695 GAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAK 750
GAG T QR G ++E+++T +E KE G+ V+P + ++++A+
Sbjct: 147 GAGGT----QRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAE 202
Query: 751 KL 752
K+
Sbjct: 203 KI 204
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 66.9 bits (164), Expect = 2e-12
Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 24/212 (11%)
Query: 586 NSTVVKGITDAFSYI-NSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSY 643
N T+++ + S+V V+++ G F G +E I + + R + S
Sbjct: 32 NDTLIEECLQVLNQCETSTV--TVVVLEGLPEVFCFGADFQE----IYQEMKRGRKQASS 85
Query: 644 CMPLY--------CKIPVIAAMQGHAIGAGWAMGLF--CDYTIFSEESVYQSPYMRYGFT 693
PLY I+ ++G G +G D I + + + + +G
Sbjct: 86 QEPLYDLWMKLQTGPYVTISHVRGKVNAGG--LGFVSATDIAIADQTASFSLSELLFGLY 143
Query: 694 PGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
P + +R G+ + + +E E G+ VL K +L
Sbjct: 144 PACVLPFL-IRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVL--LRKHLLRLR 200
Query: 754 LLSKKELELQKKYYSHSLQKKLSTIFLHELTM 785
L+KK + K++ SL ++S LT
Sbjct: 201 RLNKKGIAHYKQFM-SSLDHQVSRAKATALTA 231
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 68.3 bits (167), Expect = 3e-12
Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 29/196 (14%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENY---------FACG--------------- 621
+ V + A +V ++ G F+ G
Sbjct: 192 DGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVD 251
Query: 622 ----GTKEGLLKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIF 677
+ K+ +G+ D + + P +AA+ G AIG G + L D +
Sbjct: 252 FLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLA 311
Query: 678 SEESVYQSPYMRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLP 737
S ++ + P + G PGA L + G +SR+++ KE + R + V+
Sbjct: 312 SSDAYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVE 370
Query: 738 RKQVLFYSLKLAKKLS 753
++ + +L
Sbjct: 371 PDELDAAIERSLTRLD 386
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 66.0 bits (162), Expect = 5e-12
Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 27/195 (13%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENY--FACG--------GTKEGLLKIQKGIS 635
+ + + A S +N + + II+ F+ G G ++ L
Sbjct: 29 SKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQ 87
Query: 636 RFTD-EKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTP 694
+K P+I+ ++G G + M + D I + S + + G
Sbjct: 88 ITRMIQK-------FPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPY 140
Query: 695 GAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAK 750
G + +E++FTAS + GI V+ +++ ++L++A
Sbjct: 141 NLVGI----HNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAH 196
Query: 751 KLSLLSKKELELQKK 765
+S + + + K+
Sbjct: 197 HISEKAPLAIAVIKE 211
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 64.9 bits (159), Expect = 1e-11
Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 18/209 (8%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGY-ENYFA--------CGGTKEGLLKIQKGISR 636
+ + + + + + ++ +I+T F+ CG + K +
Sbjct: 29 SLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQE 88
Query: 637 FTDEKSYCMPLY-CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQS--PYMRYGFT 693
LY + +++A+ G G + L CDY I ++ Y + G
Sbjct: 89 LWLR------LYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGII 142
Query: 694 PGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLS 753
G + L F E + GI V+P +QV +L +
Sbjct: 143 APFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWM 202
Query: 754 LLSKKELELQKKYYSHSLQKKLSTIFLHE 782
+ +L K + +L T +
Sbjct: 203 AIPDHARQLTKAMMRKATASRLVTQRDAD 231
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 64.5 bits (158), Expect = 2e-11
Identities = 26/181 (14%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-----TKEGLLKIQKGISRFTDE 640
+ ++ + A+ + + ++++TG F G ++G + ++ D+
Sbjct: 36 SPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQ 95
Query: 641 KSYCMPLYCKI-----PVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVYQSPYMRYGFT 693
PV+ A+ G GAG W D I SE++ + P++ G
Sbjct: 96 WEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTT--TDIVIASEQATFFDPHVSIGLV 153
Query: 694 PGAGSTLIFPQRFGKILSREILFTASE--FKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
G + + + ++ + + E G+ ++ ++L + ++A
Sbjct: 154 AGRE-LVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADI 212
Query: 752 L 752
+
Sbjct: 213 V 213
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 64.1 bits (157), Expect = 2e-11
Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 37/189 (19%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG-YENYFACG------------GTKEGLLKIQK 632
+ K A I KV+I+ +F+ G + L +
Sbjct: 33 DLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNE 92
Query: 633 GISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVY--QSPYM 688
+ + IA ++GH +G G A+ CD +E+ P +
Sbjct: 93 TLDKIAR---------SPQVYIACLEGHTVGGGLEMALA--CDLRFMGDEAGKIGL-PEV 140
Query: 689 RYGFTPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFY 744
G G G T QR G + ++ T +E E G+ V P+ +
Sbjct: 141 SLGVLAGTGGT----QRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRER 196
Query: 745 SLKLAKKLS 753
+ + A+KL+
Sbjct: 197 TREYARKLA 205
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 65.8 bits (160), Expect = 3e-11
Identities = 30/220 (13%), Positives = 61/220 (27%), Gaps = 24/220 (10%)
Query: 586 NSTVVKGITDAFSYI--NSSVQYKVIIITGYENYFACGG------------TKEGLLKIQ 631
+ V + DA I V++ + + F G
Sbjct: 56 DLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTN 115
Query: 632 KGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEE---SVYQSPYM 688
+ + D + + +AA+ G G G+ + L CD ++ SV
Sbjct: 116 ETRNGLED-----SSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVP 170
Query: 689 RYGFTPGAGST--LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSL 746
G PG G + ++ + +G+ K + V+ Q
Sbjct: 171 LLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQ 230
Query: 747 KLAKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHELTMH 786
A +L+ S + Q + + ++
Sbjct: 231 ARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKTLDV 270
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 63.7 bits (156), Expect = 3e-11
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 7/173 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
++ ++ + + +VI++ +F+ G ++
Sbjct: 29 DNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVL 88
Query: 645 MPLY-----CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
L P IA +QG A G G + CD I S + + ++ G P S
Sbjct: 89 GNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP 148
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
+ + G+ ++ + +A F + +P +L ++LK A ++
Sbjct: 149 YV-VRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQI 200
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 63.8 bits (156), Expect = 4e-11
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 10/209 (4%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG-TKEGLLKIQKGISRFTDEKSYC 644
+ ++K + + S KVIII+ F+ G KE L ++G + C
Sbjct: 58 SLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKE--LTEEQGRDYHAEVFQTC 115
Query: 645 MPLYCKI-----PVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
+ I PVIA + G A AG + CD + S++S + +P + G
Sbjct: 116 SKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGV 175
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
+ + + ++ E+LFT +E G+ V+P ++ ++++A+K++ LS+
Sbjct: 176 AL-ARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPV 234
Query: 760 LELQKKYYSHSLQKKLSTIFLHEL-TMHD 787
+ L K + L + L T + M D
Sbjct: 235 VSLGKATFYKQLPQDLGTAYYLTSQAMVD 263
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 62.9 bits (154), Expect = 6e-11
Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG-YENYFACG---------GTKEGLLKIQKGIS 635
+ ++K ++ A + S + + III F G + E + K +
Sbjct: 37 SKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRA 96
Query: 636 RFTD-EKSYCMPLYCKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVYQSPYMRYGF 692
D +P IAA+ G A+G G A+ CD + + + +
Sbjct: 97 VINDIAN-------LPVPTIAAIDGLALGGGLELALA--CDIRVAASSAKMGLVETKLAI 147
Query: 693 TPGAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKL 748
PG G T QR G L++E++F+A GKE K G+ VL + Q + +
Sbjct: 148 IPGGGGT----QRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRK 203
Query: 749 AKKL 752
A L
Sbjct: 204 ALDL 207
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 63.0 bits (154), Expect = 6e-11
Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 22/195 (11%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGY-ENYFACGG-TKEGLLKIQKGISRFTDEKSY 643
VV+ + + +V+I ++F + + +
Sbjct: 32 GPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDAS 91
Query: 644 CMPLY-----CKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVY--QSPYMRYGFTP 694
L+ IA ++G A GAG + + CD S E+ Q P + G P
Sbjct: 92 LGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLA--CDMRFASRENAILGQ-PEVGIGAPP 148
Query: 695 GAGSTLIFPQRF----GKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAK 750
GAG+ Q G+ + E + T+S+F + G +P ++ + +A
Sbjct: 149 GAGAI----QHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAA 204
Query: 751 KLSLLSKKELELQKK 765
++S + L K
Sbjct: 205 RMSGFPRDALIAAKS 219
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 61.4 bits (150), Expect = 2e-10
Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGT--KE--GLLKIQKGISRFTDEK 641
++ +V + +S +V+++ F C G E +
Sbjct: 36 STALVSQLHQGLRDASSDPAVRVVVLAHTGGTF-CAGADLSEAGSGGSPSSAYDMAVERA 94
Query: 642 SYCMPLY-----CKIPVIAAMQGHAIGAGWAMGL--FCDYTIFSEESVYQSPYMRYGFTP 694
L ++PVIAA+ GH G GL CD + S + R G P
Sbjct: 95 REMAALMRAIVESRLPVIAAIDGHVRAGG--FGLVGACDIAVAGPRSSFALTEARIGVAP 152
Query: 695 GAGSTLIFPQRFGKILSREILFTASEFKGKELKERG-ISMPV 735
S + P + + T +F + +E G I+M
Sbjct: 153 AIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMAA 193
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 61.1 bits (149), Expect = 3e-10
Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 34/193 (17%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGY-ENYFACG-----------------GTKEGL 627
+T+++ + + + +VI+ + +F +
Sbjct: 33 GATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADV 92
Query: 628 LKIQKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAG--WAMGLFCDYTIFSEESVY-- 683
Q I + G A G G + D + E+
Sbjct: 93 NVFQAVGELIRH---------QPQVTIVKLAGKARGGGAEFVAA--ADMAFAAAETAGLG 141
Query: 684 QSPYMRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLF 743
Q G PG G T R G+ + E++ TA F + G LP ++
Sbjct: 142 Q-IEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDE 200
Query: 744 YSLKLAKKLSLLS 756
Y ++A+ ++ L
Sbjct: 201 YVDRVARNIAALP 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 3e-10
Identities = 61/380 (16%), Positives = 125/380 (32%), Gaps = 125/380 (32%)
Query: 456 NIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNK 515
N+ + + V+ +++ L +++ P N+ ++H N I+ I+ +
Sbjct: 188 NLKNCNSPETVL---EMLQKLLYQIDP---NWTSRSDHS--SNIKLRIH------SIQAE 233
Query: 516 KKRMAAINSFGFSGTNAHIVLMEKIKNNENIDKFINNLPIFMVFPLSAKNLS-QLLIYAK 574
+R+ + N +VL ++N + + F NLS ++L+
Sbjct: 234 LRRLLKSKPY----ENCLLVL-LNVQNAKAWNAF---------------NLSCKILL--- 270
Query: 575 LICNYISKDLKNSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGI 634
++ K +TD S + I + + T + + + +
Sbjct: 271 -----TTRF-------KQVTDFLS----AATTTHISLDHHSMTL----TPDEVKSL---L 307
Query: 635 SRFTDEKSYCMP-LYCKI-P----VIAAM--QGHAIGAGWAMGLFCD-YTIFSEESV-YQ 684
++ D + +P P +IA G A W + CD T E S+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVL 366
Query: 685 SPY-MRYGFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLF 743
P R F + +FP I +L +++
Sbjct: 367 EPAEYRKMFDRLS----VFP--------------------PSAH---IPTILL---SLIW 396
Query: 744 YSL----------KLAKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHELTMHD-----Y 788
+ + KL K SL+ K+ E S+ +L +E +H Y
Sbjct: 397 FDVIKSDVMVVVNKLHKY-SLVEKQPKES--TISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 789 ----TFVNNPSVITNIERYF 804
TF ++ + +++YF
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF 473
Score = 60.3 bits (145), Expect = 2e-09
Identities = 101/624 (16%), Positives = 173/624 (27%), Gaps = 171/624 (27%)
Query: 62 DFDKS---INNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIA 118
DF+ DI + +++ D KS ++ ++ D I + D
Sbjct: 8 DFETGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAV 61
Query: 119 -----IIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICK 173
+ + V+KF +L + ++++ + T
Sbjct: 62 SGTLRLFWTLLSKQE-EMVQKFVEEVLR--------INYKFLMSPIKTEQRQPSMMTR-- 110
Query: 174 KMGSLEDIEIFDPLFFNISPSEAEYMDPQQRLF--LQNCWTCIEDAGYNPFSLSGSL-CG 230
IE D L+ N + A+Y + + + L+ + A + G L G
Sbjct: 111 -----MYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGSG 162
Query: 231 --VFVGCAVSDYNKLITDP-KMYNAYALMGESVSILPARVSYFLNLQGPCLAID---TAC 284
Y K++ + + S + LQ ID T+
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSR 216
Query: 285 SSSLVAIAHACDS------------------LILGNSKIALAGGVY---IINTPDIHIKM 323
S I S L+L N V N ++ K+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--------VQNAKAWNAFNLSCKI 268
Query: 324 -------SKSGMLSPDGHCY-SFDQRANGFVPGEGVGVLML------KKLKDAKKDGD-- 367
+ LS + S D + P E +L+ + L +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 368 ----------DIYCIIKGWG-VNQDGKTNGITAPNTKSQIRLQT-----KIYKKFNINPN 411
D W VN D T I +S + + K++ + ++ P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTII-----ESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 412 DI----QLLEAHGTGTKL-GDPIEFEALCESF-NKFSYHKNFCALGSVKSNIGHSATAAG 465
LL + D I+ + NK HK K
Sbjct: 384 SAHIPTILLS------LIWFDVIKSD--VMVVVNKL--HKYSLVEKQPKE---------S 424
Query: 466 VIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSF 525
I + I L LK K+ N H + + + I S D+ +
Sbjct: 425 TISIPSIYLELKVKLE------NEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 526 GFSGTNAHIVLMEKIKNNENIDKF-------------INNLPIFMVFPLSAKN-LSQLLI 571
G H ++ I++ E + F I + S N L QL
Sbjct: 478 GH-----H---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 572 YAKLICNYISKDLKNSTVVKGITD 595
Y IC+ D K +V I D
Sbjct: 530 YKPYICD---NDPKYERLVNAILD 550
Score = 34.4 bits (78), Expect = 0.18
Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 41/170 (24%)
Query: 4 KKLKSKNL-SINNDDFDKSINNDDIDKSIKKNNSKIINDTI--SYDNSKKLKSKNLSINN 60
KL +L + SI + ++ +K N ++ +I Y+ K S +L
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 61 DD---FD------KSINNDDIDKSIKK---N----NSKIINDTISYDNSKKLKS------ 98
D + K+I + + + + KI +D+ +++ S + +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 99 ---KNLSINNDDFDKSINNDDIAIIGISGQFPKANNVKKFWNNLLIGRNC 145
+ N+ +++ +N AI+ + + K NL+ +
Sbjct: 529 FYKPYICDNDPKYERLVN----AIL---------DFLPKIEENLICSKYT 565
Score = 32.1 bits (72), Expect = 0.90
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 42/139 (30%)
Query: 701 IFPQRFGKILS-REIL-FTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKK 758
+F F +++ S +E+ +S + LF++L LSK+
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--------LSKQ 75
Query: 759 ELELQKKYYSHSLQKKLSTIFLHELTMHDYTFV--------NNPSVITNIERYFDKSIKK 810
E +QK F+ E+ +Y F+ PS++T Y ++
Sbjct: 76 EEMVQK--------------FVEEVLRINYKFLMSPIKTEQRQPSMMT--RMYIEQ---- 115
Query: 811 NNSKIINDTISYDNSKKLN 829
++ ND + K N
Sbjct: 116 -RDRLYNDNQVF---AKYN 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 3e-08
Identities = 87/564 (15%), Positives = 175/564 (31%), Gaps = 172/564 (30%)
Query: 16 DDFDKSINN-------DDIDKSIKKNNSKIINDTISYDNSKKLKSKN--LSINNDDFDKS 66
+ F+K + DD + + K + S K+ + L++ +F+
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 67 I--NND----------DIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDD-FDKSIN 113
ND + D ++ K I N Y ++ + + ++ +++
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSALFRAVG 150
Query: 114 NDD---IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPST-RWIIDDFYDSDKNAIGK 169
+ +AI G GQ N ++ L + T ++ D +
Sbjct: 151 EGNAQLVAIFG--GQ----GNTDDYFEEL-------RDLYQTYHVLVGDLIKF----SAE 193
Query: 170 TICKKMGSLEDIEIFDPLFFNI---------SPSEAEYMD------PQ----QRLFLQNC 210
T+ + + + D E NI +P + +Y+ P Q
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLSIPISCPLIGVIQ--LAHYV 250
Query: 211 WTCIEDAGYNPFSLSGSLCGVFVGC----------AVSDYNKLITDPKMYNAY--AL--- 255
T + G+ P L L G G A +D + + + A+
Sbjct: 251 VTA-KLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETD-----SWESFFVSVRKAITVL 303
Query: 256 --MG-ES------VSILPARVSYFL-NLQG-PC--LAIDTACSSSLV--AIAHACDSLIL 300
+G S+ P+ + L N +G P L+I + + V + L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHL-P 361
Query: 301 GNSKIALAGGVYIINTPDIHI-----------KMSKSGMLSPDGHCYS---FDQRA---- 342
++ ++ ++N + ++ +P G S F +R
Sbjct: 362 AGKQVEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 343 NGFVPGEGVGV-----LMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAPNTKSQIR 397
N F+P V L L A D I + V+ + K I +T
Sbjct: 418 NRFLP---VASPFHSHL----LVPAS---DLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 398 LQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSY-HKNFCAL----GS 452
L+ +I+ + + + P+++E +F H L G
Sbjct: 468 LRV---LSGSISERIVDCI--------IRLPVKWETTT----QFKATH----ILDFGPGG 508
Query: 453 VKSNIGHSATAAGVIGM-IKIILS 475
S +G T G +++I++
Sbjct: 509 A-SGLG-VLTHRNKDGTGVRVIVA 530
Score = 35.4 bits (81), Expect = 0.10
Identities = 57/308 (18%), Positives = 100/308 (32%), Gaps = 107/308 (34%)
Query: 510 WDIKNKKKRMAA--INSFGFSGTNAHIVLMEKIKNNENIDKFINNLPIFMVF---PLSAK 564
W+ R +++GFS +++ + NN P+ + K
Sbjct: 1646 WN------RADNHFKDTYGFS-------ILDIVINN----------PVNLTIHFGGEKGK 1682
Query: 565 NLSQLLIYAKLICNYISK-DLKNSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGT 623
+ + Y+ +I I LK + K I + +
Sbjct: 1683 RIREN--YSAMIFETIVDGKLKTEKIFKEINEHST---------SYTFRS---------- 1721
Query: 624 KEGLLKI----QKGISRFTDEKSYCMPLYCK----IPVIAAMQGHAIG---AGWAMGLFC 672
++GLL Q + EK+ L K IP A GH++G A L
Sbjct: 1722 EKGLLSATQFTQPAL--TLMEKAAFEDL--KSKGLIPADATFAGHSLGEYAA-----LAS 1772
Query: 673 DYTIFSEES----VYQSPYMRYGFT---------PGAGSTLIF---PQRFGKILSREILF 716
+ S ES V+ R G T G + + P R S+E L
Sbjct: 1773 LADVMSIESLVEVVFY----R-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 717 TASEFKGK---ELKERGISMPV---LPRKQVL----FYSL-KLAKKLSLLSKKELELQKK 765
E GK L E V + +Q + +L + L+ + +++++ +
Sbjct: 1828 YVVERVGKRTGWLVE-----IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 766 YYSHSLQK 773
S SL++
Sbjct: 1883 QKSLSLEE 1890
Score = 30.4 bits (68), Expect = 3.7
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 39/138 (28%)
Query: 685 SP---YMRY-GFTPGAGSTLIFPQRFGKILSREILFTA-SEFKGKELKERGISMPVLPRK 739
+P ++ G+ S+L+ P + G+ ++L +EF+ L+ I
Sbjct: 56 TPAELVGKFLGYV----SSLVEPSKVGQF--DQVLNLCLTEFENCYLEGNDI-------- 101
Query: 740 QVLFYSLKLAKKLSLLSKKELELQKKYYS------HSLQKKLSTIFLHELTMHDYTFVNN 793
L L +L+ KEL K Y + KK ++ + N
Sbjct: 102 HALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGE------GN 153
Query: 794 PSVIT------NIERYFD 805
++ N + YF+
Sbjct: 154 AQLVAIFGGQGNTDDYFE 171
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 50.0 bits (120), Expect = 3e-06
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ V+ + + S K I+ITG + F+ G G ++QKG + +
Sbjct: 32 SFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISI 91
Query: 646 PLY------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
+ + P +AA+ G A+G G + + C I + + P ++ G PG G T
Sbjct: 92 DIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGT 151
Query: 700 LIFPQRFGKILSR--------EILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKK 751
QR L R E++ T+ K +E G+ V+P +++ + + A
Sbjct: 152 ----QR----LPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALD 203
Query: 752 L 752
+
Sbjct: 204 I 204
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 48.0 bits (115), Expect = 1e-05
Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 37/163 (22%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG---------TKEGLLKIQKGISR 636
+ TV++ + + S K I+I G F G L + I R
Sbjct: 45 SPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQR 104
Query: 637 FTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGA 696
+ PV+AA+QG A+G G + L C Y I + ++ P + G PGA
Sbjct: 105 ------------YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGA 152
Query: 697 GSTLIFPQRFGKILSR--------EILFTASEFKGKELKERGI 731
T Q L R +++ + E GI
Sbjct: 153 RGT----QL----LPRVVGVPVALDLITSGKYLSADEALRLGI 187
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 47.6 bits (114), Expect = 2e-05
Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 24/182 (13%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG---------------TKEGLLKI 630
N + + A I + K +I++ ++ F G G L+
Sbjct: 33 NRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEA 92
Query: 631 QKGISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRY 690
K S F D +P +AA+ G A+G G M L D+ + ++ + P ++
Sbjct: 93 NKIFSDFED---------LNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKL 143
Query: 691 GFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAK 750
G PG G T+ P+ G + E + + E + ++ + V+ ++ +L L K
Sbjct: 144 GIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIK 203
Query: 751 KL 752
+
Sbjct: 204 RA 205
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 39.9 bits (94), Expect = 0.003
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
++ CSS L A+A ++ G I + G+
Sbjct: 110 AVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 145
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 40.0 bits (94), Expect = 0.003
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 10/154 (6%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGY-ENYFACGG-----TKEGLLKIQKGISRFTD 639
+++ I + +III G F GG ++ K + F +
Sbjct: 31 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE 90
Query: 640 EKS--YCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
E + K P +A + G +G G + + + + +E+ ++ P G P G
Sbjct: 91 EYMLNNAVGSCQK-PYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVG 149
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGI 731
P+ GK L + T KG+++ GI
Sbjct: 150 GGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGI 182
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 39.1 bits (92), Expect = 0.006
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P ++ CSS L A+A + G+ I +A GV
Sbjct: 109 PLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGV 144
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 37.9 bits (89), Expect = 0.012
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P +A++ CSS L A+ + + +G I LA GV
Sbjct: 93 PFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 37.4 bits (88), Expect = 0.016
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
I CSS + AI A + LG S++ +AGGV
Sbjct: 83 TGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGV 118
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 37.5 bits (88), Expect = 0.018
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P + ++ C SS+ A+ A ++ G++++ L GGV
Sbjct: 83 PAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGV 118
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 36.7 bits (86), Expect = 0.026
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
+ C SS+ A+ A +++ GN + + GGV
Sbjct: 86 AAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGV 121
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 36.7 bits (86), Expect = 0.031
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 264 PARVSYF---LNLQGPCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
PAR + + + ++ C S L A+A + G++ I +AGG+
Sbjct: 66 PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGM 116
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 36.3 bits (84), Expect = 0.041
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 637 FTDEKS--YCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTP 694
F +E Y + Y K PV+ G +G G + + + +E S P + G P
Sbjct: 128 FEEEYRLDYLLHTYGK-PVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYP 186
Query: 695 GAGSTLIF---PQRFGKILSREILFTASEFKGKELKERGI 731
G + P + G L TA + G+
Sbjct: 187 DVGGSYFLNRMPGKMGLFLG----LTAYHMNAADACYVGL 222
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 36.3 bits (85), Expect = 0.041
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG 310
P + C S L A+ A S+ +G+S I +AGG
Sbjct: 84 PAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGG 118
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 35.9 bits (84), Expect = 0.042
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGG 310
PC I+ C+S + AI A SL+ G+ + +AGG
Sbjct: 86 PCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGG 120
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 36.3 bits (85), Expect = 0.042
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P + I+ C S L +++ A + LG++ I L GG
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGA 120
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 35.9 bits (84), Expect = 0.045
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
P ++ C S L ++ A S+ G + + +AGG
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGT 118
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 35.2 bits (82), Expect = 0.073
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGV 311
++ C S L A+A A ++ G K+ + GV
Sbjct: 81 AGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGV 116
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 35.2 bits (82), Expect = 0.078
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 276 PCLAIDTACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHC 335
+ ++ C+S L A+ A + G + LAGGV MS+ M S DG
Sbjct: 88 GGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVE---------SMSRVPMGS-DGGA 137
Query: 336 YSFD---QRANGFVP-GEG 350
++ D GFVP G G
Sbjct: 138 WATDPETNYRIGFVPQGIG 156
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B* 3nvl_A
Length = 561
Score = 31.4 bits (72), Expect = 1.2
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 371 CIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGT 421
++ G G+ + + + +T N + + + AHGT
Sbjct: 20 VVMDGLGIGPEDDYDAVHMASTPFMDAH-------RRDNRH-FRCVRAHGT 62
>2w4y_A Caulobacter 5 virus-like particle; structure, assembly, calcium
ION, RNA; HET: AMP; 2.90A {Unclassified levivirus} PDB:
2w4z_A*
Length = 122
Score = 29.0 bits (64), Expect = 2.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 378 VNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQ 414
+NQDG T+ P T S R + + + K ++ PN +Q
Sbjct: 23 INQDGYTSEYYLPETSSSFRAKVR-HTKESVKPNQVQ 58
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 30.4 bits (68), Expect = 2.6
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 27 IDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINN---DD----IDKSIKKN 79
+D I + KII + + + L INN + + N +DKSIK
Sbjct: 71 VDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDL 130
Query: 80 NSKIINDTISYDNSKKLKSKNLS 102
+ I N++ D + N +
Sbjct: 131 ITLISNESSQLDADVRATYANYN 153
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 4.1
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 23/87 (26%)
Query: 453 VKSNIGHSATAAGVIGMIKIILSLKHKVLPP--------------TINYNILNEHIKLEN 498
VK N S A V +I+I+ L+ I + I
Sbjct: 128 VKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSE 187
Query: 499 SPFF---------INTKCKSWDIKNKK 516
+ +N KC WD +K
Sbjct: 188 NNDMDNNNDGVDELNKKCTFWDAISKL 214
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA
ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces
cerevisiae}
Length = 246
Score = 29.0 bits (64), Expect = 6.5
Identities = 13/73 (17%), Positives = 32/73 (43%)
Query: 46 DNSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINN 105
D+ + +K + S N + + +DK ++ + + ++ N KK K + L
Sbjct: 171 DSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEIL 230
Query: 106 DDFDKSINNDDIA 118
+ +++DD+
Sbjct: 231 RQNNIKLSDDDVL 243
Score = 28.6 bits (63), Expect = 8.2
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 4 KKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDF 63
+ +K + S N + + +DK ++ + + ++ N KK K + L
Sbjct: 174 RNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEILRQN 233
Query: 64 DKSINNDDIDKS 75
+ +++DD+ S
Sbjct: 234 NIKLSDDDVLDS 245
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 29.0 bits (64), Expect = 6.6
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 16 DDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIDKS 75
DD DK + + ID+ K +N T+ + + + + I DF N D +
Sbjct: 18 DDDDKHMCGNSIDEKTVKKYENQLNQTVKQEIASLSQDSGIKIEFSDF--KCNADGDFIA 75
Query: 76 IKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIAI 119
N K + + + + ++KN+ I +++ K N I+I
Sbjct: 76 CLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIYKGETNTSISI 119
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S,
3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B;
HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Length = 256
Score = 28.9 bits (64), Expect = 6.7
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 223 SLSGSLCGVFVGCAVSDYNKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDT 282
S +G G+F+ + + ++ + E + P +
Sbjct: 31 SATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFEL--------DFIFEGGKPIVVSFL 82
Query: 283 ACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSPDGHCYSFDQRA 342
A V IAHA L K + Y+ K K M D + Q
Sbjct: 83 AAFVFAVFIAHA----FLAMRKFPINYRQYLT------FKTHKDLMRHGDTTLWWI-QAM 131
Query: 343 NGFV 346
GF
Sbjct: 132 TGFA 135
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
isomerase, alpha/beta-type structure; HET: 2PG; 1.4A
{Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3
PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Length = 511
Score = 29.0 bits (66), Expect = 7.9
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 371 CIIKGWGVNQDGKTNGITAPNT 392
I+ G+ + + N + N
Sbjct: 9 IILDGFALRDETYGNAVAQANK 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,474,580
Number of extensions: 772758
Number of successful extensions: 2484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2246
Number of HSP's successfully gapped: 196
Length of query: 829
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 727
Effective length of database: 3,853,851
Effective search space: 2801749677
Effective search space used: 2801749677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)