RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11396
(829 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 223 bits (568), Expect = 8e-68
Identities = 57/263 (21%), Positives = 90/263 (34%), Gaps = 31/263 (11%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ + G+ P + F L G++ V P TR+
Sbjct: 4 VVVTGLGALTPIGVGQEAFHKAQLAGKSGVR--PITRFDASALPVR-------------- 47
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
E+ + E +D + L +EDAG P L G VG
Sbjct: 48 --IAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTG 105
Query: 237 VSDYNKLIT--------DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSL 288
+ P + + + ++ A ++ GP + TAC++
Sbjct: 106 IGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGA 165
Query: 289 VAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS-----PDGHCYSFDQRAN 343
A+ A + LG + + LAGG TP + LS P+ F +
Sbjct: 166 DALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRD 225
Query: 344 GFVPGEGVGVLMLKKLKDAKKDG 366
GFV GEG GVL+L+ + AKK G
Sbjct: 226 GFVMGEGAGVLVLEAYEHAKKRG 248
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 201 bits (511), Expect = 1e-59
Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 30/264 (11%)
Query: 116 DIAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKM 175
+ + G+ P N V+ W LL G++ +S I + + + C
Sbjct: 3 RVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID--HFDTSAYATKFAGLVKDFNC--- 57
Query: 176 GSLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGC 235
IS E MD + + ++D+G + + G +G
Sbjct: 58 ------------EDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGS 105
Query: 236 AVSDYNK--------LITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSS 287
+ + P+ + + + V+++ ++ L+GP ++I TA +S
Sbjct: 106 GIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSG 165
Query: 288 LVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS-----PDGHCYSFDQRA 342
+ I HA + G++ + +AGG +TP + LS P +D+
Sbjct: 166 VHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKER 225
Query: 343 NGFVPGEGVGVLMLKKLKDAKKDG 366
+GFV G+G G+L+L++ + AKK G
Sbjct: 226 DGFVLGDGAGMLVLEEYEHAKKRG 249
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 185 bits (470), Expect = 5e-54
Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 30/263 (11%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ + G+ P N ++ +W L+ GRN + P TR+ D
Sbjct: 4 VVVTGLGAITPIGNTLQDYWQGLMEGRNGIG--PITRFDASDQA---------------C 46
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
+ EA+ MD + I DA L+ GV +G
Sbjct: 47 RFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTG 106
Query: 237 VSDYNKLIT--------DPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSL 288
+ L P + + + ++ + L +GP TAC++
Sbjct: 107 IGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGS 166
Query: 289 VAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS-----PDGHCYSFDQRAN 343
AI A + G +K + GG TP + + + LS P FD+ +
Sbjct: 167 NAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRD 226
Query: 344 GFVPGEGVGVLMLKKLKDAKKDG 366
GFV GEG G+L+L++L+ A G
Sbjct: 227 GFVMGEGSGILILEELESALARG 249
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 184 bits (467), Expect = 2e-53
Identities = 61/262 (23%), Positives = 90/262 (34%), Gaps = 29/262 (11%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ + G P N ++FWN+L G+ + I ++ DF + I
Sbjct: 11 VVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGIT--KFDHSDFDVHNAAEIQDFPF---- 64
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
+ D L + A + +L+ GV V
Sbjct: 65 -----------DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASG 113
Query: 237 VSDY--------NKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSL 288
+ PK L ++ V+ G C +I+TACSSS
Sbjct: 114 IGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSN 173
Query: 289 VAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS----PDGHCYSFDQRANG 344
AI A S+ G + L GG TP LS P FD+ NG
Sbjct: 174 DAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNG 233
Query: 345 FVPGEGVGVLMLKKLKDAKKDG 366
FV GEG G+L+L+ L+ A+K G
Sbjct: 234 FVMGEGSGMLVLESLEHAEKRG 255
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 173 bits (438), Expect = 4e-50
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 331 PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDDIYCIIKGWGVNQDGKTNGITAP 390
P+ FD +GFV EG + +L+ A G I+ I G+ +
Sbjct: 3 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA 62
Query: 391 NTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCAL 450
+ + + + DI + AHG+GT+ D E A H +
Sbjct: 63 DGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKR---ALGEHARRTPV 119
Query: 451 GSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKSW 510
S+KS +GHS A G + + +L+L+H V+PPT N + L+ P
Sbjct: 120 SSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVP---------L 170
Query: 511 DIKNKKKRMAAINSFGFSGTNAHIVLME 538
+ + +K R GF G + +VL +
Sbjct: 171 EARERKLRSVLTVGSGFGGFQSAMVLRD 198
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 169 bits (428), Expect = 5e-48
Identities = 53/268 (19%), Positives = 95/268 (35%), Gaps = 15/268 (5%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ + G+ P V+ W L+ G + + + F + K + K+
Sbjct: 3 VVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVA 62
Query: 177 SL----EDIEIFDPLFFNISPSEAEYMDPQQRLF----LQNCWTCIEDAGYNPFSLSGSL 228
+ + FD + S + A ++ W E+ +S
Sbjct: 63 AFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGG 122
Query: 229 CGVFVGCAVSDYNKLITDPKM-YNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSS 287
+ V + + + + V++ VS QGP A TAC++
Sbjct: 123 GIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATG 182
Query: 288 LVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS------PDGHCYSFDQR 341
+I A + G++ + +AGG S+S LS P FD
Sbjct: 183 AHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCD 242
Query: 342 ANGFVPGEGVGVLMLKKLKDAKKDGDDI 369
+GFV GEG GV++L++ + AK+ G I
Sbjct: 243 RDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 157 bits (396), Expect = 8e-44
Identities = 44/258 (17%), Positives = 85/258 (32%), Gaps = 13/258 (5%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
I G+ NN ++ +L GR+ ++ + G G
Sbjct: 4 AVITGLGIVSSIGNNQQEVLASLREGRSGITFSQ--ELKDSGMRS---HVWGNVKLDTTG 58
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
++ + +I + + G S GS G
Sbjct: 59 LIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 237 VSDYNKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACD 296
+ K Y + S + A ++ + G +I +AC++S I +A +
Sbjct: 119 AMRGPR---GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVE 175
Query: 297 SLILGNSKIALAGGVYIINTPDIHIK-----MSKSGMLSPDGHCYSFDQRANGFVPGEGV 351
+ LG I AGG + +S +P+ ++D +GFV G
Sbjct: 176 QIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGG 235
Query: 352 GVLMLKKLKDAKKDGDDI 369
G++++++L+ A G I
Sbjct: 236 GMVVVEELEHALARGAHI 253
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 151 bits (381), Expect = 6e-43
Identities = 45/172 (26%), Positives = 66/172 (38%), Gaps = 12/172 (6%)
Query: 369 IYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDP 428
IY + G+G++ D N + I + I + AHGT T GD
Sbjct: 2 IYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 61
Query: 429 IEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYN 488
E +A+ F + + S KS GH AAG + I IL+L+ + +PPTIN +
Sbjct: 62 AEAQAVKTI---FGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLD 118
Query: 489 ILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVLMEKI 540
+ NSFGF GTN ++ +KI
Sbjct: 119 --------NPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF-KKI 161
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 143 bits (362), Expect = 2e-40
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 370 YCIIKGWGVNQDGKTNGITAPNTKSQ--IRLQTKIYKKFNINPNDIQLLEAHGTGTKLGD 427
Y + G+G++ D + IT P + + T+ ++ + PN I + AH T T +GD
Sbjct: 1 YAELCGYGMSGDA--HHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGD 58
Query: 428 PIEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINY 487
+E A+ F++ + A S K GH AAG + I IL++ H V P T+N
Sbjct: 59 AVEARAIKTVFSEHATS-GTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNV 117
Query: 488 NILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVLMEKI 540
+ P + K R A NSFGF GTNA ++ I
Sbjct: 118 KNPDPIFDKRFMPLTTSKK--------MLVRTAMSNSFGFGGTNASLLF-ASI 161
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 136 bits (344), Expect = 5e-38
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 369 IYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDP 428
IY + G+G + D P K + K I P + + AHGT T +GD
Sbjct: 2 IYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 61
Query: 429 IEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYN 488
E A+ F H + S KS IGH AAG + I + +L H V+PPTIN
Sbjct: 62 AEVLAIKRVFGD---HAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLE 118
Query: 489 ILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVLMEKI 540
+ + L+ P + K A NSF F G NA + +++
Sbjct: 119 DPDPELDLDFVPE----------PREAKVDYALSNSFAFGGHNAVLAF-KRV 159
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 136 bits (343), Expect = 8e-38
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 369 IYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDP 428
IY + G+ + D P+ + R K + P + + AHGT T D
Sbjct: 2 IYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 61
Query: 429 IEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYN 488
E A+ ++ +Y+ A+ S KS GH +G I + ++++ +PPTIN
Sbjct: 62 TETRAIKQALGNHAYN---IAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLE 118
Query: 489 ILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
+ L+ P + +A NSFGF G N +
Sbjct: 119 NPDPECDLDYVP---------GQSRALIVDVALSNSFGFGGHNVTLAF 157
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 130 bits (328), Expect = 2e-35
Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 18/207 (8%)
Query: 331 PDGHCYSFDQRANGFVPGEGVGVLMLKKLKDAKKDGDD-IYCIIKGWGVNQDGKTNGITA 389
PD FD+RA G+VPGEG +L+L+ A+ G Y + G D +
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFD---PAPGS 58
Query: 390 PNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPIEFEALCESFNKFSYHKNFCA 449
R P D+ ++ A G G D E A + +
Sbjct: 59 GRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARA-----IGRVFGREGVP 113
Query: 450 LGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNILNEHIKLENSPFFINTKCKS 509
+ K+ G + G + ++ ++SL+ V+ PT + ++ + + +S
Sbjct: 114 VTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID----LVLGEPRS 169
Query: 510 WDIKNKKKRMAAINSFGFSGTNAHIVL 536
R A + + G G N+ VL
Sbjct: 170 TAP-----RTALVLARGRWGFNSAAVL 191
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 124 bits (311), Expect = 2e-33
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 370 YCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDPI 429
Y I G+G DG + AP+ + +R + + I L +HGT T +GD
Sbjct: 1 YAEIVGYGATSDGAD--MVAPSGEGAVRC---MKMAMHGVDTPIDYLNSHGTSTPVGDVK 55
Query: 430 EFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYNI 489
E A+ E F S + + K+ GHS AAGV I +L L+H + P+IN
Sbjct: 56 ELAAIREVFGDKSPA-----ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEE 110
Query: 490 LNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVLMEKI 540
L+E + I T+ ++ NSFGF GTNA +V+ K+
Sbjct: 111 LDEQA----AGLNIVTETTDREL-----TTVMSNSFGFGGTNATLVM-RKL 151
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 114 bits (286), Expect = 4e-30
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 15/168 (8%)
Query: 369 IYCIIKGWGVNQDGKTNGITAPNTKSQIRLQTKIYKKFNINPNDIQLLEAHGTGTKLGDP 428
I + G+G D P + I+ ++ I+P + + AH G
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAH------GTS 55
Query: 429 IEFEALCESFNKFSYHKNFCALGSVKSNIGHSATAAGVIGMIKIILSLKHKVLPPTINYN 488
ES + + S KS GH AAG + I I +++H +P T +
Sbjct: 56 TPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTS 115
Query: 489 ILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVL 536
++++I+ + + +I A N+FGF G NA +
Sbjct: 116 EVSDYIEAN----VVYGQGLEKEI-----PYAISNTFGFGGHNAVLAF 154
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 110 bits (274), Expect = 6e-28
Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 31/229 (13%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ I G+ + P N ++FW L GR +I F+D
Sbjct: 3 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRIS--------FFDPSPYRSQVAAEADF- 53
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
DP+ P E + MD + + +G +P +L + GV +G A
Sbjct: 54 --------DPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 105
Query: 237 VSDYNKLI--------------TDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDT 282
V+ L D + + S++PA V++ + +GP + T
Sbjct: 106 VAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVST 165
Query: 283 ACSSSLVAIAHACDSLILGNSKIALAGGVYIINTPDIHIKMSKSGMLSP 331
C+S L ++ +A ++ G++ + AG TP + +
Sbjct: 166 GCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTA 214
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 100 bits (248), Expect = 2e-24
Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 10/214 (4%)
Query: 117 IAIIGISGQFPKANNVKKFWNNLLIGRNCVSKIPSTRWIIDDFYDSDKNAIGKTICKKMG 176
+ I G+ P + +W+ +L GR+ + + TR+ + + + I
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPV--TRFDVSRYPATLAGQIDDFHAPDHI 59
Query: 177 SLEDIEIFDPLFFNISPSEAEYMDPQQRLFLQNCWTCIEDAGYNPFSLSGSLCGVFVGCA 236
+ DP + Y+ ++ + CG F
Sbjct: 60 PGRLLPQTDPSTRL-------ALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTH 112
Query: 237 VSDYNKLITDPKMYNAYALMGESVSILPARVSYFLNLQGPCLAIDTACSSSLVAIAHACD 296
PK + Y ++ ++S ++GP A+ + L A+ HA
Sbjct: 113 REFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARR 172
Query: 297 SLILGNSKIALAGGVYIINTPDIHIKMSKSGMLS 330
++ G + + ++GGV P + SG +S
Sbjct: 173 TIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIS 205
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 91.0 bits (225), Expect = 6e-21
Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ +++ + A I++TG E FA G + + S+
Sbjct: 32 CNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWD 91
Query: 646 PLY-CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGSTLIFPQ 704
+ K PVIAA+ G+A+G G + + CD E++ + P + G PGAG T +
Sbjct: 92 HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTR 151
Query: 705 RFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKELELQK 764
GK L+ E++ T ++ K+ G+ + P + ++ +++ A+K++ SK + + K
Sbjct: 152 AVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAK 211
Query: 765 KYYSHSLQKKLSTIFLHELTMHDYTF 790
+ + + + L+ E + TF
Sbjct: 212 ESVNAAFEMTLTEGNKLEKKLFYSTF 237
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 57.4 bits (137), Expect = 1e-09
Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 7/211 (3%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ + + A + + + +++TG F+ G L ++ + + S +
Sbjct: 24 SPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSL 83
Query: 646 PLYC------KIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAGST 699
P +AA+ G A+ G + L CD + EE+ ++ GF S
Sbjct: 84 MRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSV 143
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSKKE 759
+ + G+ ++++L T + +E K G+ + P + L + LA++++ +
Sbjct: 144 I-LVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTS 202
Query: 760 LELQKKYYSHSLQKKLSTIFLHELTMHDYTF 790
L L K+ L F + +
Sbjct: 203 LRLTKELLLALPGMGLEDGFRLAALANAWVR 233
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 47.0 bits (110), Expect = 4e-06
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 14/136 (10%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGG--------TKEGLLKIQKGISRF 637
N + + + F I+ + ++++G F G + I+ +
Sbjct: 29 NRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWY 88
Query: 638 TDEKSYCMPLY------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYG 691
+ C PVIAA+ G IG G + CD ++++ +Q + G
Sbjct: 89 LRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVG 148
Query: 692 FTPGAGSTLIFPQRFG 707
G+ P+ G
Sbjct: 149 LAADVGTLQRLPKVIG 164
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 38.2 bits (87), Expect = 0.003
Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 6/173 (3%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITG-YENYFACGGTKEGLLKIQKGISRFTDEKSYC 644
N + + A I + K +I++ + + E + + +
Sbjct: 33 NRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEA 92
Query: 645 MPLYCKIPVIAAMQGHAIGAGWAMGLFCDY-----TIFSEESVYQSPYMRYGFTPGAGST 699
++ + AI G + ++ + P ++ G PG G T
Sbjct: 93 NKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGT 152
Query: 700 LIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKL 752
+ P+ G + E + + E + ++ + V+ ++ +L L K+
Sbjct: 153 VRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRA 205
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 37.9 bits (86), Expect = 0.004
Identities = 35/208 (16%), Positives = 78/208 (37%), Gaps = 8/208 (3%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
+ ++ +TDA + ++ITG E+ F G + + + +
Sbjct: 28 SVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAAL 87
Query: 646 PLY--------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQSPYMRYGFTPGAG 697
+ K PV+AA+ G A G G + L D I ++ + + + G
Sbjct: 88 WWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTA 147
Query: 698 STLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSLKLAKKLSLLSK 757
++ + G + E++ T +E K+ G+ V P+ + + K+A++L+
Sbjct: 148 TSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPT 207
Query: 758 KELELQKKYYSHSLQKKLSTIFLHELTM 785
+ K+ + + + E+
Sbjct: 208 HLQVMAKERFHAGWMQPVEECTEFEIQN 235
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 37.4 bits (85), Expect = 0.005
Identities = 20/126 (15%), Positives = 33/126 (26%), Gaps = 21/126 (16%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKGISRFTDEKSYCM 645
V + + S V+++TG GG Q+ R + +
Sbjct: 45 RPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGD 104
Query: 646 PLY---------------------CKIPVIAAMQGHAIGAGWAMGLFCDYTIFSEESVYQ 684
VI + G A G G ++ + CD T+ S E
Sbjct: 105 TADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARF 164
Query: 685 SPYMRY 690
Sbjct: 165 KQTDAD 170
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 36.6 bits (83), Expect = 0.009
Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 21/219 (9%)
Query: 586 NSTVVKGITDAFSYINSSVQYKVIIITGYENYFACGGTKEGLLKIQKG------------ 633
+ + + + II +F+ G +G+ K Q
Sbjct: 30 EGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKW 89
Query: 634 ISRFTDEKSYCMPLYCKIPVIAAMQGHAIGAGWAMGLFCDYT---IFSEESVYQSPYMRY 690
+S F Y + K + + G + L +++ P+
Sbjct: 90 VSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANL 149
Query: 691 GFTPGAGSTLIFPQRFGKILSREILFTASEFKGKELKERGISMPVLPRKQVLFYSL---- 746
G G+T+ P +FG + E L FK + E G +
Sbjct: 150 GLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKV 209
Query: 747 --KLAKKLSLLSKKELELQKKYYSHSLQKKLSTIFLHEL 783
+L +K+ L KK + + E+
Sbjct: 210 LEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEV 248
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 30.6 bits (68), Expect = 1.1
Identities = 15/113 (13%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 8 SKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSI 67
++ I D+ ++ +D+ +++ + + +L+ ++N DK +
Sbjct: 1157 PRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLL------RLELDRAAMN----DKDL 1206
Query: 68 NNDDIDKSIKKNNSKIINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIAII 120
+ + IK+ + S DN +KL + + D ++ ++
Sbjct: 1207 TMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHML 1259
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 3.6
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 489 ILNEHIKLENSPFFINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVLMEKIKNNENIDK 548
I E + + F + + K ++ I G H+ + + +N +K
Sbjct: 25 INKELANIRSK-FKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEK 83
Query: 549 FINNLPIFMVFPLSAKNLSQLLIYAKLICNYISKDLKNS 587
I ++ + + S+L+ LI N I DL +
Sbjct: 84 QI----GYLFISVLVNSNSELIR---LINNAIKNDLASR 115
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 27.8 bits (61), Expect = 4.5
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 502 FINTKCKSWDIKNKKKRMAAINSFGFSGTNAHIVLMEKIKNNENIDKFINNLPIFMVFPL 561
+ + K + + S IVL K + N+ NLP V
Sbjct: 122 LLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIA 181
Query: 562 SAKNLSQLLIYAKLICNYISKD-LKNSTVV 590
N S+ A I D LK +V
Sbjct: 182 DNPNNSKNGEKAVRIDGLNVFDMLKYDYLV 211
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 27.5 bits (60), Expect = 7.3
Identities = 9/77 (11%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 38 IINDTISYDNSKKLKSKNLSINNDDFDKSINNDDIDKSIKKNNSKIINDTISYDNSKKLK 97
I++ +Y+N +L+ + + F I+ +++ I N +++
Sbjct: 3 TIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQV- 61
Query: 98 SKNLSINNDDFDKSINN 114
+ L + ++++
Sbjct: 62 RQLLCLYYAHYNRNAKQ 78
>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
2,3-Bisphosphoglycerate-independent phosphoglycerate
mutase, catalytic domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 275
Score = 27.3 bits (59), Expect = 8.4
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 369 IYCIIKGWGVNQDGKTNGITAPNT 392
I+ G+ + + N + N
Sbjct: 6 ALIILDGFALRDETYGNAVAQANK 29
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 27.3 bits (60), Expect = 8.9
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 551 NNLPI--FMVFPLSAKNLSQLLIYAKLICNYISKDLKNSTVVKGITD 595
NN+ I FM+ P+ AK + + + + ++++K LK + + D
Sbjct: 22 NNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGD 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,136,251
Number of extensions: 155611
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 59
Length of query: 829
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 736
Effective length of database: 1,130,706
Effective search space: 832199616
Effective search space used: 832199616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)