RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11398
(336 letters)
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 370 bits (952), Expect = e-129
Identities = 148/273 (54%), Positives = 173/273 (63%), Gaps = 33/273 (12%)
Query: 15 ELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYL 74
+LD WI QL+K LPES+VK LC+KA E+L +E NV V +PVT CGDIHGQF DL+ L
Sbjct: 1 DLDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLEL 60
Query: 75 FKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYG 134
F+ GG YLFLGDYVDRG YSVE LL A K++YP+ + LLRGNHE R +QVYG
Sbjct: 61 FRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYG 120
Query: 135 FYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKA 194
FYDEC+RKYG VWK TD FDYLPL ALIDN+I C+HGGLS
Sbjct: 121 FYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSP---------------- 164
Query: 195 CGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNRG 254
S+ LD +I IDR +EVP+ G M DLLWSDPDD E W S RG
Sbjct: 165 --------------SIDTLD--QIRAIDRFQEVPHEGPMCDLLWSDPDD-IEGWGISPRG 207
Query: 255 AGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
AG +FG + + H N L ICRAHQ+V EGY
Sbjct: 208 AGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGY 240
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 312 bits (801), Expect = e-106
Identities = 121/259 (46%), Positives = 155/259 (59%), Gaps = 33/259 (12%)
Query: 29 LPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLFKKGGRIGQEKYLF 88
L + ++ L ++ E+ QE N++ VS PVT CGDIHGQF+DL+ LF K G+ + Y+F
Sbjct: 1 LYKEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVF 60
Query: 89 LGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKYGGVTV 148
LGDYVDRG +S+E I LLFA KI YPN + LLRGNHE RS +++YGFYDEC RKY G +
Sbjct: 61 LGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKY-GERI 119
Query: 149 WKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEEILCMHGGL 208
++ F +AF +LPL ALI+ +ILCMHGGLS
Sbjct: 120 YEKFNEAFSWLPLAALINGKILCMHGGLS------------------------------P 149
Query: 209 SVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNRGAGIIFGPAITSLYT 268
+ LD +I + R +E P GL+ DLLWSDPD + S RGA IFGP +
Sbjct: 150 DLTTLD--DIRKLKRPQEPPDDGLLIDLLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFL 207
Query: 269 HFNNLAYICRAHQVVKEGY 287
NNL I RAHQVV +GY
Sbjct: 208 KKNNLKLIIRAHQVVDDGY 226
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 277 bits (709), Expect = 2e-92
Identities = 122/273 (44%), Positives = 160/273 (58%), Gaps = 33/273 (12%)
Query: 15 ELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYL 74
++D I+ L LPE +K +C++A E+ +E NV V PV CGDIHGQF DL L
Sbjct: 2 DIDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQAL 61
Query: 75 FKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYG 134
FK+GG I Y+F+GD+VDRG SVE + L K+KYP + LLRGNHE R +QVYG
Sbjct: 62 FKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYG 121
Query: 135 FYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKA 194
FY+E +RKYG W+ F D FD LPL ALI+ +ILC+HGGLS ++ ID
Sbjct: 122 FYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLS------PDMRTID---- 171
Query: 195 CGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNRG 254
+I IDR E+P+ G DL+WSDP++ E W ++RG
Sbjct: 172 ----------------------QIRTIDRKIEIPHEGPFCDLMWSDPEE-VEYWAVNSRG 208
Query: 255 AGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
AG +FG +T + N+L ICRAHQ+V EGY
Sbjct: 209 AGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGY 241
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 270 bits (693), Expect = 5e-90
Identities = 120/280 (42%), Positives = 169/280 (60%), Gaps = 41/280 (14%)
Query: 16 LDSWISQL--------EKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQ 67
+DS I +L K ++L E++++ LC K+ E+ + ++ + P+ CGDIHGQ
Sbjct: 2 IDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQ 61
Query: 68 FEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECR 127
+ DL+ LF+ GG + YLFLGDYVDRG+ S+E I LL AYKIKYP FLLRGNHEC
Sbjct: 62 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 121
Query: 128 STSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEIN 187
S +++YGFYDEC R+Y + +WK FTD F+ LP+ A+ID +I CMHGGLS ++
Sbjct: 122 SINRIYGFYDECKRRYN-IKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLS------PDLQ 174
Query: 188 MIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETEN 247
SME+I I R +VP +GL+ DLLWSDPD + +
Sbjct: 175 ---------SMEQI-----------------RRIMRPTDVPDQGLLCDLLWSDPDKDVQG 208
Query: 248 WKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
W ++RG FG + + + + ++L ICRAHQVV++GY
Sbjct: 209 WGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGY 248
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 242 bits (619), Expect = 1e-78
Identities = 104/267 (38%), Positives = 138/267 (51%), Gaps = 40/267 (14%)
Query: 28 KLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLFKKGGRIGQEKYL 87
+L E + + E+L QE N++ + PVT CGDIHGQF DL+ LF+ GG +YL
Sbjct: 15 RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYL 74
Query: 88 FLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKYGGVT 147
FLGDYVDRG +S+EC+ L+A KI YP +FLLRGNHECR ++ + F EC KY
Sbjct: 75 FLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SER 133
Query: 148 VWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEEILCMHGG 207
V+ +AFD LPL AL++ + LC+HGGLS E+ +D
Sbjct: 134 VYDACMEAFDCLPLAALMNQQFLCVHGGLS------PELKTLD----------------- 170
Query: 208 LSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASN-------RGAGIIFG 260
+I +DR +E P G M DLLWSDP ++ N K RG +
Sbjct: 171 ---------DIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYS 221
Query: 261 PAITSLYTHFNNLAYICRAHQVVKEGY 287
+ NNL I RAH+ GY
Sbjct: 222 YRAVCEFLQKNNLLSIIRAHEAQDAGY 248
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 234 bits (597), Expect = 3e-75
Identities = 117/267 (43%), Positives = 160/267 (59%), Gaps = 33/267 (12%)
Query: 21 SQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLFKKGGR 80
S+ K + L E++V+ LC KA ++ + ++ + P+ CGD+HGQ+ DL+ LF+ GG
Sbjct: 24 SKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGY 83
Query: 81 IGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECM 140
+ YLFLGDYVDRG+ S+E I LL AYKIKYP FLLRGNHEC S +++YGFYDEC
Sbjct: 84 PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK 143
Query: 141 RKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEE 200
R+Y + +WK FTD F+ LP+ ALID E+
Sbjct: 144 RRY-TIKLWKTFTDCFNCLPVAALID--------------------------------EK 170
Query: 201 ILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNRGAGIIFG 260
ILCMHGGLS + ++ +I I R +VP GL+ DLLWSDPD + + W + RG +F
Sbjct: 171 ILCMHGGLSPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFS 230
Query: 261 PAITSLYTHFNNLAYICRAHQVVKEGY 287
I ++ + L ICRAHQVV++GY
Sbjct: 231 QEIVQVFLKKHELDLICRAHQVVEDGY 257
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 219 bits (560), Expect = 1e-69
Identities = 99/266 (37%), Positives = 144/266 (54%), Gaps = 40/266 (15%)
Query: 28 KLPESKVKHLCKKAVELLGQEKNVIVVSTP----VTACGDIHGQFEDLMYLFKKGGRIGQ 83
KL + + + ELL + +++ ++ P +T CGD HGQF DL+ +F+ G +
Sbjct: 28 KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSE 87
Query: 84 EK-YLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRK 142
YLF GD+VDRG +SVE I LFA+K+ YPN+ L RGNHE + +++YGF E K
Sbjct: 88 TNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAK 147
Query: 143 YGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEEIL 202
Y ++ F++ F++LPL LI+ ++L +HGGL D V
Sbjct: 148 YNE-QMFDLFSEVFNWLPLAHLINGKVLVVHGGLFSD----------DGVT--------- 187
Query: 203 CMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKA-SNRGAGIIFGP 261
LD +I IDR ++ P GLM +LLWSDP + + ++ S RG G FGP
Sbjct: 188 ----------LD--DIRKIDRFRQPPDSGLMCELLWSDP--QPQPGRSPSKRGVGCQFGP 233
Query: 262 AITSLYTHFNNLAYICRAHQVVKEGY 287
+T + NNL YI R+H+V EGY
Sbjct: 234 DVTKRFLEENNLEYIIRSHEVKDEGY 259
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 209 bits (533), Expect = 6e-66
Identities = 101/268 (37%), Positives = 155/268 (57%), Gaps = 33/268 (12%)
Query: 21 SQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLFKKGGR 80
++ +++I + E ++ + + E+ + ++ + PV CGD HGQ+ DL+ +F+K G
Sbjct: 17 NRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGF 76
Query: 81 IGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECM 140
YLFLGDYVDRG++SVE I+L F YKI YP FLLRGNHEC S +++YGF+D+
Sbjct: 77 PPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVK 136
Query: 141 RKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEE 200
R+Y + ++K FTD F+ +P+C +I E+
Sbjct: 137 RRY-NIKLFKAFTDVFNTMPVCCVIS--------------------------------EK 163
Query: 201 ILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNRGAGIIFG 260
I+CMHGGLS + +N I+R +VP RG++ DLLW+DP+DE + S+RG +FG
Sbjct: 164 IICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFG 223
Query: 261 PAITSLYTHFNNLAYICRAHQVVKEGYG 288
I + + ++ I RAHQV++ GYG
Sbjct: 224 EDIVNDFLDMVDMDLIVRAHQVMERGYG 251
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 193 bits (491), Expect = 2e-59
Identities = 99/290 (34%), Positives = 141/290 (48%), Gaps = 53/290 (18%)
Query: 19 WISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLF--- 75
W +++ +++ LC A ++ QE V+ + P+ GDIHGQF DLM LF
Sbjct: 11 WKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEY 70
Query: 76 -----KKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTS 130
+ G I YLFLGDYVDRG S+E I LL A K+KYPN + L+RGNHE R +
Sbjct: 71 GSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDIN 130
Query: 131 QVYGFYDECMRKYG-----GVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGE 185
++GF +EC + G G +VW+ F++LPL A+I+++ILCMHGG+
Sbjct: 131 ALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIG------RS 184
Query: 186 INMIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDR-VKEVPYRGLMTDLLWSDPDDE 244
IN + EI + R + ++ DLLWSDP +
Sbjct: 185 INHVS--------------------------EIEDLKRPLTMEFGEQVVMDLLWSDPTEN 218
Query: 245 -----TENWKASNRGAGII--FGPAITSLYTHFNNLAYICRAHQVVKEGY 287
RG G+I FGP + N+L I RAH+ V +G+
Sbjct: 219 DSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGF 268
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 185 bits (471), Expect = 2e-57
Identities = 89/239 (37%), Positives = 114/239 (47%), Gaps = 50/239 (20%)
Query: 59 TACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVF 118
GDIHG +DL+ L +K G +K +FLGDYVDRG SVE I LL A KI P+ V
Sbjct: 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVI 59
Query: 119 LLRGNHECRSTSQVYGFYDECMR--------KYGGVTVWKNFTDAFDYLPLCALIDNRIL 170
LLRGNHE + +YGFYDE K G +W+ F D F YLPL ALI+
Sbjct: 60 LLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIET--- 116
Query: 171 CMHGGLSVKCLDIGEINMIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYR 230
+++LC+HGGLS + + +++KE P
Sbjct: 117 ----------------------------KKVLCVHGGLS------PGLPLEEQIKEEPED 142
Query: 231 GLMTDLLWSDPDDETENWKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGYGP 289
L DLLWSDP + + +S RG GP + N L I R H V+EGY
Sbjct: 143 QLPEDLLWSDPLELPGGFGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEF 197
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 164 bits (417), Expect = 3e-48
Identities = 98/289 (33%), Positives = 151/289 (52%), Gaps = 29/289 (10%)
Query: 14 NELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVST----PVTACGDIHGQFE 69
+ +D+ I ++K L V + ++A ++L Q N+ VST VT CGD+HG+ +
Sbjct: 5 DHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLD 64
Query: 70 DLMYLFKKGGRIGQEK-YLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRS 128
DL +F K G E Y+F GD+VDRG+ S+E + +LFA+ + YPN V L RGNHE
Sbjct: 65 DLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHI 124
Query: 129 TSQVYGFYDECMRKYG--GVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEI 186
+ YGF E M KY G + + D F +LPL +IDN+IL +HGG+S D ++
Sbjct: 125 MNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGIS----DSTDL 180
Query: 187 NMIDRVKACGSMEEILCMHGGLSV-KCLDIGEINMIDRVKEVPYRGL-------MTDLLW 238
+++D++ H +SV + + + +E P L + D+LW
Sbjct: 181 DLLDKID----------RHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILW 230
Query: 239 SDPDDETENWKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
SDP + + RG G FGP +TS + L+ + R+H+ EGY
Sbjct: 231 SDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGY 279
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 148 bits (376), Expect = 1e-41
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 29 LPESKVKHLCKKAVELLGQEKNVIVV----STPVTACGDIHGQFEDLMYLFKKGGRIGQE 84
LP + L A ++L +E N + + V GD+HGQ D+++L + G Q
Sbjct: 35 LPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQN 94
Query: 85 K-YLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKY 143
+ Y+F GDYVDRG + +E LL ++K+ P+ V+LLRGNHE + + +YGF E + KY
Sbjct: 95 RFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKY 154
Query: 144 G--GVTVWKNFTDAFDYLPLCALIDNRILCMHGGL----SVKCLDIGEINMIDRVKACGS 197
G G V++ F+ LPL ++I R+ HGGL S+ + +
Sbjct: 155 GDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPE 214
Query: 198 MEEILCMHGGLSVKCLDIGEINMIDR-VKEVPYRGLMT---DLLWSDPDDETENWKASNR 253
E S+K + ++ R V + P G D+LWSDP R
Sbjct: 215 SE---------SLKLGTLDDLMKARRSVLDPPGEGSNLIPGDVLWSDPSLTPGLSPNKQR 265
Query: 254 GAGIIFGPAITSLYTHFNNLAYICRAHQ 281
G G+++GP T + NNL I R+H+
Sbjct: 266 GIGLLWGPDCTEEFLEKNNLKLIIRSHE 293
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 111 bits (277), Expect = 2e-29
Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 27/148 (18%)
Query: 57 PVTACGDIHGQFEDL---MYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKY 113
+ GD+HG +DL + L + G + LFLGD VDRG S+E ++LLFA K+K
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 114 PNYVFLLRGNHECRSTSQVYGFYDECMR------------------------KYGGVTVW 149
P V+L+RGNH+ S + GFY EC GG VW
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 150 KNFTDAFDYLPLCALIDNRILCMHGGLS 177
+ F + D L L AL+D +IL +HG LS
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLS 148
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 77.8 bits (191), Expect = 2e-17
Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 37/164 (22%)
Query: 131 QVYGFYDECMRKYGGVTVWK---NFTDAFDYLPLCALIDNR-ILCMHGGLSVKCLD-IGE 185
+YGFYDE +RKYG W + FD LPL A+ + +LC HGGLS +
Sbjct: 5 ALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDI 64
Query: 186 INMIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPD-DE 244
I ++DR++AC EVP+ G DLLWSDPD +
Sbjct: 65 IEVLDRLRAC------------------------------EVPHAGHTHDLLWSDPDGGD 94
Query: 245 TENWKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGYG 288
W RG G +T+++ + I RAH + G
Sbjct: 95 RRIWNPGPRGVP-RDGGDVTAVFGIVHTPKLIERAHVLYDIDTG 137
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 57.3 bits (139), Expect = 9e-10
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 27/118 (22%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRIG----QEKYLFLGDYVDRGEYSVECISLLFAYKIKYPN 115
GDIHG + L +G +++ + +GD +DRG S+ C+ LL P
Sbjct: 5 VVGDIHGHYSLLQKALD---AVGFDPARDRLISVGDLIDRGPESLACLELL-----LEPW 56
Query: 116 YVFLLRGNHECR-STSQVYGFYDE-CMRKYGGVTVW----------KNFTDAFDYLPL 161
+RGNHE + D GG W + + LPL
Sbjct: 57 -FHAVRGNHEQMAIDALRAEPLDAVRWLANGG--EWFLDLPDEELRRWLALKLEQLPL 111
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 48.8 bits (116), Expect = 3e-07
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 60 ACGDIHGQFEDLMYLFKKG--GRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYV 117
DIHG E L + + + L LGD V G E ++ A + V
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPV 61
Query: 118 FLLRGNHE 125
+++ GNH+
Sbjct: 62 YVVPGNHD 69
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 46.9 bits (111), Expect = 4e-06
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 63 DIHGQFEDLMYLFKK--GGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLL 120
DIHG+++ L+ + K R +E +FLGDYVDRG+ S + ++ +F N V LL
Sbjct: 8 DIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLL 67
Query: 121 RGNHE 125
GNH+
Sbjct: 68 -GNHD 71
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 44.9 bits (107), Expect = 1e-05
Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 60 ACGDIHGQFEDLMYLFKKGG-------RIGQEKYLF-LGDYVDRGEYSVECISLLFAYK- 110
A GD+HG + + K G IG +L LGD DRG +E + LL+ +
Sbjct: 2 AIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQ 61
Query: 111 --IKYPNYVFLLRGNHEC-------RSTSQVY--GFYDECMRKYGGVTVWKNFTDAFDYL 159
K V L GNHE R Y F MR+ ++ + +L
Sbjct: 62 EAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRR---ELFSPGGELGRWL 118
Query: 160 ---PLCALIDNRILCMHGGLSV 178
P+ + N L +HGGL
Sbjct: 119 RSKPVIVKV-NDTLFVHGGLGP 139
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 45.0 bits (107), Expect = 2e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 62 GDIHGQFEDLM-------YLFKKGGRI---GQEKYLFLGDYVDRGEYSVECISLLF-AYK 110
GD+HG +++L Y K+ G + + +F+GD VDRG S E + L+
Sbjct: 7 GDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA 66
Query: 111 IKYPNYVFLLRGNHE 125
V GNH+
Sbjct: 67 AGAALCV---PGNHD 78
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 41.7 bits (98), Expect = 2e-04
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 62 GDIHGQFEDLMYLFKKGGRIGQEKYLF-LGDYVDRGEYSVECISLLFAYKIKYPNYVFLL 120
GDIHG FE LM + L +GD +DRG S+ C+ LL ++V +
Sbjct: 23 GDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLL------EEHWVRAV 76
Query: 121 RGNHE 125
RGNHE
Sbjct: 77 RGNHE 81
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 41.7 bits (98), Expect = 3e-04
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 58 VTAC-GDIHGQFEDLMYLFKK-GGRIGQEKY-----LFLGDYVDRGEYSVECISLLFAYK 110
V C GDIHG L L+ +G + +FLGDY DRG + + I L +
Sbjct: 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLP 62
Query: 111 IKYPN--YVFLLRGNHE 125
K+P +VFL GNH+
Sbjct: 63 EKHPKQRHVFLC-GNHD 78
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 39.6 bits (93), Expect = 0.001
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 62 GDIHGQFEDLMYLFKKGG--------RIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKY 113
GDIHG E L+ L K G R + + +FLGD +DRG E + ++ +
Sbjct: 5 GDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAG 64
Query: 114 PNYVFLLRGNHE 125
+ GNHE
Sbjct: 65 HALAVM--GNHE 74
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 37.8 bits (88), Expect = 0.004
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 62 GDIHGQFEDLMYLFKKGGRI---------GQEKYLFLGDYVDRGEYSVECISLLF-AYKI 111
GDIHG +++ L +K G Q K F+GD DRG +S+ I +++ +
Sbjct: 7 GDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEK 66
Query: 112 KYPNYVFLLRGNH 124
K YV GNH
Sbjct: 67 KAAYYV---PGNH 76
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 35.4 bits (82), Expect = 0.049
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 27/84 (32%)
Query: 62 GDIHGQFEDLMYLFKK---------GGRIGQ------EKYLFLGDYVDRGEYSVECISLL 106
GD+HG ++L L ++ GGR K +F+GD VDRG S + L+
Sbjct: 186 GDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPGVLRLV 245
Query: 107 FAYKIKYPNYV-----FLLRGNHE 125
V + GNH+
Sbjct: 246 M-------GMVAAGTALCVPGNHD 262
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 34.3 bits (79), Expect = 0.063
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 62 GDIHGQF--EDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFL 119
GD+HGQ+ ED+ L + + LF+GD+ G SV+ + + + P V L
Sbjct: 7 GDVHGQWDLEDIKAL----HLLQPDLVLFVGDF---GNESVQLVRAI--SSLPLPKAVIL 57
Query: 120 LRGNHECRSTSQ 131
GNH+ +
Sbjct: 58 --GNHDAWYDAT 67
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 34.0 bits (79), Expect = 0.071
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRI----GQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPN 115
A GDI G +++L L +K I +++ +GD V+RG S+E + + + +
Sbjct: 3 AIGDIQGCYDELQRLLEK---INFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----D 55
Query: 116 YVFLLRGNHE 125
+ GNH+
Sbjct: 56 SAKTVLGNHD 65
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 33.2 bits (77), Expect = 0.13
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 62 GDIHGQFEDLMYLFKKGGRI----GQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYV 117
GDI G +++L L +K I ++ +GD V+RG S+E + + + +
Sbjct: 7 GDIQGCYDELQRLLEK---IDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG----DSA 59
Query: 118 FLLRGNHE 125
+ GNH+
Sbjct: 60 VTVLGNHD 67
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 32.2 bits (73), Expect = 0.29
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 62 GDIHGQFEDLMYLFKKGG-RIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLL 120
GD+HG +++L L ++ GQ+ GD V RG S+E + + + + V L+
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLV 62
Query: 121 RGNHE 125
GNH+
Sbjct: 63 LGNHD 67
>gnl|CDD|237714 PRK14439, PRK14439, acylphosphatase; Provisional.
Length = 163
Score = 31.2 bits (70), Expect = 0.47
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 40 KAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLFKKGG 79
K + L G KN+ S V ACG+ GQ E LM K GG
Sbjct: 99 KKLGLTGYAKNLDDGSVEVVACGE-EGQVEKLMQWLKSGG 137
>gnl|CDD|188878 cd08532, SAM_PNT-PDEF-like, Sterile alpha motif (SAM)/Pointed
domain of prostate-derived ETS factor. SAM Pointed
domain of PDEF-like (Prostate-Derived ETS Factor)
subfamily of ETS transcriptional regulators is a
putative protein-protein interaction domain. In human
males this activator is highly expressed in the
prostate gland and enhances androgen-mediated
activation of the PSA promoter though interaction with
the DNA binding domain of androgen receptor. PDEF may
play a role in prostate cancer development as well as
in goblet cell formation and mucus production in the
epithelial lining of respiratory and intestinal tracts.
Length = 81
Score = 28.9 bits (65), Expect = 0.88
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 18 SWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDI-HGQFE 69
+W+ E + +LP + + L + V P GD H Q E
Sbjct: 24 AWLQWTEHQYRLPPNPPRCFQMNGKTLCALSEEDFVRRAP--QGGDTLHAQLE 74
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 29.3 bits (66), Expect = 3.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 36 HLCKKAVELLGQEKNVIVVSTP 57
LC +A + L +E NV VVS P
Sbjct: 561 SLCVEAAKALSKELNVRVVSMP 582
>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
Length = 672
Score = 29.4 bits (66), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 101 ECISLLFAYKIKYPNYVFLLRGNHECR 127
E I+ F K +Y +Y L RGNH+ R
Sbjct: 330 ELIAHHFVNKTQYKDYAILYRGNHQSR 356
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It
is a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 28.9 bits (65), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 20 ISQLEKKIKLPESKVKHLCKKAVELLGQEKNV 51
++Q K+ PE K++ L K+ ELL + K +
Sbjct: 10 LNQSLSKLDTPEEKLETLIKRLAELLKEMKRL 41
>gnl|CDD|176716 cd09014, BphC-JF8_C_like, C-terminal, catalytic, domain of
BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from
Bacillus sp. JF8 and similar proteins.
2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes
the extradiol ring cleavage reaction of
2,3-dihydroxybiphenyl, a key step in the polychlorinated
biphenyls (PCBs) degradation pathway (bph pathway). BphC
belongs to the type I extradiol dioxygenase family,
which requires a metal ion in the active site in its
catalytic mechanism. Polychlorinated biphenyl degrading
bacteria demonstrate a multiplicity of BphCs. This
subfamily of BphC is represented by the enzyme purified
from the thermophilic biphenyl and naphthalene degrader,
Bacillus sp. JF8. The members in this family of BphC
enzymes may use either Mn(II) or Fe(II) as cofactors.
The enzyme purified from Bacillus sp. JF8 is
Mn(II)-dependent, however, the enzyme from Rhodococcus
jostii RHAI has Fe(II) bound to it. BphC_JF8 is
thermostable and its optimum activity is at 85 degrees
C. The enzymes in this family have an internal
duplication. This family represents the C-terminal
repeat.
Length = 166
Score = 27.6 bits (62), Expect = 5.8
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 240 DPDDETENWKASNRGAGII-FGPAITSLYTH 269
DPD E W R G G + S +T+
Sbjct: 134 DPDWEPVTWTEEERKRGQAWGGKTLPSFHTY 164
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.4 bits (64), Expect = 6.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 22 QLEKKIKLPESKVKHLCKKAVELLGQEKNV 51
L++K++ + K ++L KK EL +EKN+
Sbjct: 91 TLDRKMESLDKKEENLEKKEKELSNKEKNL 120
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 27.6 bits (61), Expect = 8.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 19/73 (26%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRIGQEKY-------LFLGDYVDRGEYSVECISLLFAYKIK 112
GDIHG+++ L R+ Q + + +GD +DRG S+ + LL
Sbjct: 19 VVGDIHGEYQLLQ------SRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL-----N 67
Query: 113 YPNYVFLLRGNHE 125
P ++ ++GNHE
Sbjct: 68 QPWFIS-VKGNHE 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,206,970
Number of extensions: 1657391
Number of successful extensions: 1389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 53
Length of query: 336
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 239
Effective length of database: 6,635,264
Effective search space: 1585828096
Effective search space used: 1585828096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)