RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11398
(336 letters)
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 387 bits (996), Expect = e-136
Identities = 139/274 (50%), Positives = 170/274 (62%), Gaps = 33/274 (12%)
Query: 14 NELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMY 73
ELD WI QL + +L ES+VK LC+KA E+L +E NV V PVT CGD+HGQF DLM
Sbjct: 8 KELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLME 67
Query: 74 LFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVY 133
LF+ GG+ YLF+GDYVDRG YSVE ++LL A K++Y + +LRGNHE R +QVY
Sbjct: 68 LFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVY 127
Query: 134 GFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVK 193
GFYDEC+RKYG VWK FTD FDYLPL AL+D +I C+HGGLS I+ +D
Sbjct: 128 GFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS------PSIDTLD--- 178
Query: 194 ACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNR 253
I +DR++EVP+ G M DLLWSDPDD W S R
Sbjct: 179 -----------------------HIRALDRLQEVPHEGPMCDLLWSDPDD-RGGWGISPR 214
Query: 254 GAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
GAG FG I+ + H N L + RAHQ+V EGY
Sbjct: 215 GAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 248
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 379 bits (976), Expect = e-132
Identities = 118/288 (40%), Positives = 169/288 (58%), Gaps = 41/288 (14%)
Query: 8 LSKRSGNELDSWISQL--------EKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVT 59
+S LDS I +L K ++L E++++ LC K+ E+ + ++ + P+
Sbjct: 1 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 60 ACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFL 119
CGDIHGQ+ DL+ LF+ GG + YLFLGDYVDRG+ S+E I LL AYKIKYP FL
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 120 LRGNHECRSTSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVK 179
LRGNHEC S +++YGFYDEC R+Y + +WK FTD F+ LP+ A++D +I C HGGLS
Sbjct: 121 LRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLS-- 177
Query: 180 CLDIGEINMIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWS 239
++ ++ +I I R +VP +GL+ DLLWS
Sbjct: 178 ----PDLQSME--------------------------QIRRIMRPTDVPDQGLLCDLLWS 207
Query: 240 DPDDETENWKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
DPD + + W ++RG FG + + + H ++L ICRAHQVV++GY
Sbjct: 208 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGY 255
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 377 bits (970), Expect = e-132
Identities = 117/280 (41%), Positives = 167/280 (59%), Gaps = 41/280 (14%)
Query: 16 LDSWISQL--------EKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQ 67
LDS I +L K ++L E++++ LC K+ E+ + ++ + P+ CGDIHGQ
Sbjct: 8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQ 67
Query: 68 FEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECR 127
+ DL+ LF+ GG + YLFLGDYVDRG+ S+E I LL AYKIKYP FLLRGNHEC
Sbjct: 68 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 127
Query: 128 STSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEIN 187
S +++YGFYDEC R+Y + +WK FTD F+ LP+ A++D +I C HGGLS ++
Sbjct: 128 SINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLS------PDLQ 180
Query: 188 MIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETEN 247
++ +I I R +VP +GL+ DLLWSDPD + +
Sbjct: 181 SME--------------------------QIRRIMRPTDVPDQGLLCDLLWSDPDKDVQG 214
Query: 248 WKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
W ++RG FG + + + H ++L ICRAHQVV++GY
Sbjct: 215 WGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGY 254
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 373 bits (959), Expect = e-129
Identities = 111/294 (37%), Positives = 146/294 (49%), Gaps = 44/294 (14%)
Query: 3 TEISTLSKRSGNELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACG 62
T +D + L K+ +L ES + + +L QEKN++ + PVT CG
Sbjct: 17 TAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCG 76
Query: 63 DIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRG 122
DIHGQF DLM LF+ GG +YLFLGDYVDRG +S+EC+ L+A KI YP +FLLRG
Sbjct: 77 DIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRG 136
Query: 123 NHECRSTSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLS--VKC 180
NHECR ++ + F EC KY V+ DAFD LPL AL++ + LC+HGGLS +
Sbjct: 137 NHECRHLTEYFTFKQECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINT 195
Query: 181 LDIGEINMIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSD 240
LD +I +DR KE P G M D+LWSD
Sbjct: 196 LD----------------------------------DIRKLDRFKEPPAYGPMCDILWSD 221
Query: 241 PDDETENWKA-------SNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
P ++ N K + RG + + NNL I RAH+ GY
Sbjct: 222 PLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGY 275
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 368 bits (946), Expect = e-125
Identities = 112/279 (40%), Positives = 147/279 (52%), Gaps = 40/279 (14%)
Query: 16 LDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLF 75
+D + L K+ +L ES + + +L QEKN++ + PVT CGDIHGQF DLM LF
Sbjct: 43 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLF 102
Query: 76 KKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGF 135
+ GG +YLFLGDYVDRG +S+EC+ L+A KI YP +FLLRGNHECR ++ + F
Sbjct: 103 EVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTF 162
Query: 136 YDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKAC 195
EC KY V+ DAFD LPL AL++ + LC+HGGLS EIN +D
Sbjct: 163 KQECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLS------PEINTLD----- 210
Query: 196 GSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKA----- 250
+I +DR KE P G M D+LWSDP ++ N K
Sbjct: 211 ---------------------DIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFT 249
Query: 251 --SNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
+ RG + + NNL I RAH+ GY
Sbjct: 250 HNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGY 288
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 359 bits (923), Expect = e-124
Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 38/277 (13%)
Query: 16 LDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVST----PVTACGDIHGQFEDL 71
+ + + + KL + + E+L + ++ + +T CGD HGQF DL
Sbjct: 16 MKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDL 75
Query: 72 MYLFKKGGRIGQE-KYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTS 130
+ +F+ G + Y+F GD+VDRG +SVE I LF +K+ YP++ LLRGNHE + +
Sbjct: 76 LNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMN 135
Query: 131 QVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMID 190
Q+YGF E KY +++ F++ F++LPL I+ ++L MHGGL +
Sbjct: 136 QIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSE----------- 183
Query: 191 RVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKA 250
LD +I I+R ++ P G M DLLWSDP +
Sbjct: 184 ------------------DGVTLD--DIRKIERNRQPPDSGPMCDLLWSDPQPQ-NGRSI 222
Query: 251 SNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
S RG FGP +T + NNL YI R+H+V EGY
Sbjct: 223 SKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGY 259
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 352 bits (905), Expect = e-121
Identities = 93/280 (33%), Positives = 133/280 (47%), Gaps = 41/280 (14%)
Query: 16 LDSWISQLEKKIK-LPESKVKHLCKKAVELLGQEKNVIVVST------PVTACGDIHGQF 68
+ ++ L K K LP+ V + A L QE +++ + ++ CGD HGQF
Sbjct: 17 ISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQF 76
Query: 69 EDLMYLFKKGGRIGQE-KYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECR 127
D++ LF+K G++G + YLF GD+VDRG +S E L + KI +PN FL RGNHE
Sbjct: 77 YDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESD 136
Query: 128 STSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEIN 187
+ +++YGF DEC KY ++ F +F+ LPL LI+N L MHGGL
Sbjct: 137 NMNKIYGFEDECKYKY-SQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSD-----PSA 190
Query: 188 MIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETEN 247
+ + IDR + P G +LLW+DP +
Sbjct: 191 TLS--------------------------DFKNIDRFAQPPRDGAFMELLWADPQE-ANG 223
Query: 248 WKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
S RG G FGP IT + N L I R+H++ G
Sbjct: 224 MGPSQRGLGHAFGPDITDRFLRNNKLRKIFRSHELRMGGV 263
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 357 bits (917), Expect = e-121
Identities = 91/277 (32%), Positives = 139/277 (50%), Gaps = 38/277 (13%)
Query: 16 LDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVS----TPVTACGDIHGQFEDL 71
+ + + + KL + + E+L + ++ + +T CGD HGQF DL
Sbjct: 169 MKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDL 228
Query: 72 MYLFKKGGRIGQE-KYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTS 130
+ +F+ G + Y+F GD+VDRG +SVE I LF +K+ YP++ LLRGNHE + +
Sbjct: 229 LNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMN 288
Query: 131 QVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMID 190
Q+YGF E KY +++ F++ F++LPL I+ ++L MHGGL + + +D
Sbjct: 289 QIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSE-----DGVTLD 342
Query: 191 RVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKA 250
+I I+R ++ P G M DLLWSDP +
Sbjct: 343 --------------------------DIRKIERNRQPPDSGPMCDLLWSDPQPQ-NGRSI 375
Query: 251 SNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
S RG FGP +T + NNL YI R+H+V EGY
Sbjct: 376 SKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGY 412
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 82.5 bits (203), Expect = 6e-18
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 24/192 (12%)
Query: 24 EKKIKLPESKVKHLCKK-AVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYLFKKGGRI- 81
+ ++ PE K + E+ + + V A D+HGQ++ L+ L KK I
Sbjct: 38 KLQVNRPEHCGDLPETKLSSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIID 97
Query: 82 -------GQEKYLFLGDYVDRGEYSVECISLLFAYKIKYP---NYVFLLRGNHECRSTSQ 131
G+ + GD DRG E + ++ + V LL GNHE
Sbjct: 98 SDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGG 157
Query: 132 VYGFYDEC------MRKYGGVTVWKNFTDAFDYLPLCALI--DNRILCMHGGLS----VK 179
+ + + ++ T+ +L I N +L MHGG+S +
Sbjct: 158 DLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISR 217
Query: 180 CLDIGEINMIDR 191
L + + N + R
Sbjct: 218 ELTLDKANALYR 229
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 60.2 bits (146), Expect = 8e-11
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 47 QEKNVIVVSTPVTACGDIHGQFEDLMYLFKK-GGRIGQEKYLFLGDYVDRGEYSVECISL 105
+ +N+ VV GD+HG + +LM G ++ + +GD VDRG +VEC+ L
Sbjct: 11 KYRNIWVV-------GDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLEL 63
Query: 106 LFAYKIKYPNYVFLLRGNHE 125
+ +P +RGNHE
Sbjct: 64 I-----TFPW-FRAVRGNHE 77
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 60.1 bits (146), Expect = 1e-10
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 62 GDIHGQFEDLMYLFKK-GGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLL 120
GDIHG L L + + G + + +GD V++G S + LL +
Sbjct: 25 GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLGAYS------V 78
Query: 121 RGNHE 125
GNH+
Sbjct: 79 LGNHD 83
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 51.7 bits (123), Expect = 8e-08
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 62 GDIHGQFEDLMYLFKK-GGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLL 120
GD+HG +++L+ L K G++ GD V RG S++ + + + L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSV----RLV 62
Query: 121 RGNHECRSTSQVYGFY----DECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMH 173
GNH+ + G + + + PL + + + L M
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMA 119
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 49.3 bits (117), Expect = 4e-07
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 62 GDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLR 121
D+H L + GR+ + LGD V G EC+ L+ +
Sbjct: 10 SDVHANLVALEAVLSDAGRV--DDIWSLGDIVGYGPRPRECVELVRVLAPNIS-----VI 62
Query: 122 GNHECRSTSQVYGFYDECMRKYGGVTVWKNFTDA----FDYLPLCALIDNRILCMHGG 175
GNH+ ++ + ++ + LP +ID +HG
Sbjct: 63 GNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNR-MIDGDWTVVHGS 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-06
Identities = 59/334 (17%), Positives = 105/334 (31%), Gaps = 117/334 (35%)
Query: 12 SGNELDSWISQLEKKIKLPESKVKHLCK---KAVELLGQEKNVIVVSTPVTACGDIHGQF 68
GN++ + ++L ++ K K L K A + + + S A G+ G
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE--GNA 154
Query: 69 EDLMYLFKKGGRIGQEKYLFLG---DYVDRGEYSVECISLLFAYKIKYPNYV--FLLRG- 122
+ L+ +F G GQ G DY + E L Y+ Y V +
Sbjct: 155 Q-LVAIF--G---GQ------GNTDDYFE------ELRDL---YQT-YHVLVGDLIKFSA 192
Query: 123 ---NHECRSTSQVYGFYDECMRKYGGVTV--WKNFTDAF---DYL-------PLCALIDN 167
+ R+T + + G+ + W DYL PL +I
Sbjct: 193 ETLSELIRTTLDAEKVFTQ------GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ- 245
Query: 168 RILCMHGGLSVKCLDIGEINMIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEV 227
L H ++ K L + +K G +
Sbjct: 246 --LA-HYVVTAKLLGFTPGELRSYLK-------------GATG-HS-------------- 274
Query: 228 PYRGLMTDLLWSDPDDETENWKASNRGAGIIFGPAITSLYTHFNNLAYI-CRAHQVVKEG 286
+GL+T + ++ D W++ F ++ T L +I R ++
Sbjct: 275 --QGLVTAVAIAETDS----WES--------FFVSVRKAIT---VLFFIGVRCYEAYPNT 317
Query: 287 YGPTQAV-DEVEAVFVLLDLRKDINDEGIQSSLL 319
P + D +E N+EG+ S +L
Sbjct: 318 SLPPSILEDSLE------------NNEGVPSPML 339
Score = 33.9 bits (77), Expect = 0.091
Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 75/193 (38%)
Query: 67 QFEDLMYLFKKGGRIGQEKYLF----LGDYVDRGEYS--VECIS--LLF--AYKIKYPNY 116
FEDL K G I F LG EY+ ++ + ++
Sbjct: 1743 AFEDL----KSKGLI-PADATFAGHSLG------EYAALA-SLADVMSIESLVEV----- 1785
Query: 117 VFLLRGNHECRSTSQVYGFYDECMRKYGGV------TVWKNFT-DAFDYLPLCALIDNRI 169
VF RG T QV DE R G+ V +F+ +A Y + + R
Sbjct: 1786 VF-YRGM-----TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY--VVERVGKR- 1836
Query: 170 LCMHGGLSVKCLDI-------------GEINMIDRVKACGSMEEILCMHGGLSVKCLDIG 216
G L ++I G++ +D V +L + ++ +DI
Sbjct: 1837 ---TGWL----VEIVNYNVENQQYVAAGDLRALDTV------TNVL---NFIKLQKIDII 1880
Query: 217 EIN---MIDRVKE 226
E+ ++ V+
Sbjct: 1881 ELQKSLSLEEVEG 1893
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 44.7 bits (105), Expect = 2e-05
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 62 GDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLR 121
DIHG L + ++G ++Y LGD + G + LL I +
Sbjct: 18 SDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPI-----TARVL 72
Query: 122 GNHE 125
GN E
Sbjct: 73 GNWE 76
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 44.0 bits (103), Expect = 2e-05
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 62 GDIHGQFEDLMYLFK-----KGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNY 116
+I G L + EKY LG+ V Y E I ++ K
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--EN 65
Query: 117 VFLLRGNHE 125
V ++RG ++
Sbjct: 66 VKIIRGKYD 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 57/418 (13%), Positives = 108/418 (25%), Gaps = 134/418 (32%)
Query: 3 TEISTLSKRSGNELDSWISQLEK---------KIKLP-ESKVKHLCKKAVELLGQEKNVI 52
+ I T ++ +I Q ++ K + L ++A+ L KNV+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVL 154
Query: 53 VV-------STPV-TACGD--IHGQFEDLMYLFKKGGRIGQEK-------------YLFL 89
+ + C + + + ++ + Y
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQID 210
Query: 90 GDYVDRGEYSV----------ECISLLFAYKIKYPNYVFLLRG----------NHECR-- 127
++ R ++S + L K Y N + +L N C+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 128 -ST--SQVYGFYDECMRKY-GGVTVWKNFTDAFDYLPLCAL-IDNRI------LCMHGGL 176
+T QV F + T + L +D R +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 177 SVKCLDIGE-----INMIDRVK--ACGSMEEILCMHGGLSVKCLDIGEINMI-------- 221
+ I E + D K C + I+ S+ L+ E +
Sbjct: 329 RLSI--IAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFP 382
Query: 222 DRVKEVPYRGLMTDLLWSDPDDET---------------ENWKASNRGAGIIFGPAITSL 266
+P L L+W D + K S I S+
Sbjct: 383 PSAH-IPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--------IPSI 431
Query: 267 Y----THFNNLAYICRAHQVVKEGYGPTQAVDEVEAVFVLLDLRKDINDEGIQSSLLY 320
Y N + H+ + + Y + D DL D+ S + +
Sbjct: 432 YLELKVKLENEYAL---HRSIVDHYNIPKTFD-------SDDLIPPYLDQYFYSHIGH 479
Score = 35.2 bits (80), Expect = 0.031
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 44/199 (22%)
Query: 6 STLSKRSGNELDSWIS--QLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGD 63
+L ++ E I LE K+KL H + V+ K D
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTF--------DSDD 463
Query: 64 IHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFL---L 120
+ + D Y Y +G ++ E+ LF ++ + ++ FL +
Sbjct: 464 LIPPYLD-QYF-----------YSHIGHHLKNIEHPER--MTLF--RMVFLDFRFLEQKI 507
Query: 121 RGNHECRSTSQVYGFYDEC--MRKYGGVTVWKNFTD---AFDYLPLCALIDNRILCMHGG 175
R H+ + + + ++ Y D ++ L + A++D
Sbjct: 508 R--HDSTAWNASGSILNTLQQLKFYK-----PYICDNDPKYERL-VNAILDFLPKIEENL 559
Query: 176 LSVKCLDIGEINMIDRVKA 194
+ K D+ I ++ +A
Sbjct: 560 ICSKYTDLLRIALMAEDEA 578
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 38.6 bits (89), Expect = 0.002
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 1/105 (0%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFL 119
A + G E L K G + +G+ + + S + + +
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILS-EAHLPTAY 68
Query: 120 LRGNHECRSTSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCAL 164
+ G + + + + V + FT + +
Sbjct: 69 VPGPQDAPIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGV 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.026
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 10 KRSGNELDSWISQLEKKIKL--PESKVKHLCKKA-VE 43
K++ + +L+ +KL +S L KA +E
Sbjct: 19 KQA-------LKKLQASLKLYADDS-APALAIKATME 47
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 29.7 bits (67), Expect = 1.0
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 19/82 (23%)
Query: 51 VIVVSTPVTACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSV--------EC 102
++ S DIHG + + + G + + LGD ++ G + +
Sbjct: 28 LMFAS-------DIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKV 80
Query: 103 ISLLFAYKIKYPNYVFLLRGNH 124
+ L K V +RGN
Sbjct: 81 VERLNEVAHK----VIAVRGNC 98
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 29.7 bits (66), Expect = 1.3
Identities = 13/172 (7%), Positives = 36/172 (20%), Gaps = 26/172 (15%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNY--- 116
A + +F+ L L + + +G+ + E A +
Sbjct: 10 AIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHE 69
Query: 117 ----------------------VFLLRGNHECRSTSQVYGFYDECMRKYGGVTVWKNFTD 154
F++ G ++ + Y+ + + F
Sbjct: 70 NEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAG 129
Query: 155 AFDYLPLCALI-DNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEEILCMH 205
+ +K ++ V + +
Sbjct: 130 WRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIFY 181
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein
transport, ESCRT, MVB, multivesicular bodies, endosome,
lysosome, PH domain, protein sorting; 3.6A
{Saccharomyces cerevisiae} SCOP: a.2.17.2
Length = 155
Score = 28.9 bits (64), Expect = 1.4
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 88 FLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKYG 144
+L D +D +Y+ LL +K+ + ++ + + Y
Sbjct: 65 YLKDSIDDTQYTNTVDKLLKQFKV--------YLNSQNKEEINKHFQSIEAFCDTYN 113
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes,
trafficking complex, vacuole protei sorting, ESCRT
protein complexes; HET: DDQ; 2.10A {Saccharomyces
cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Length = 109
Score = 27.9 bits (62), Expect = 1.6
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 88 FLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKYG 144
+L D +D +Y+ LL +K+ + ++ + + Y
Sbjct: 48 YLKDSIDDTQYTNTVDKLLKQFKV--------YLNSQNKEEINKHFQSIEAFADTYN 96
>2p22_B Vacuolar protein sorting-associated protein 28; endosome,
trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A
{Saccharomyces cerevisiae}
Length = 118
Score = 28.0 bits (62), Expect = 1.9
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 88 FLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKYG 144
+L D +D +Y+ LL +K+ + ++ + + Y
Sbjct: 57 YLKDSIDDTQYTNTVDKLLKQFKV--------YLNSQNKEEINKHFQSIEAFADTYN 105
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 27.5 bits (60), Expect = 7.3
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 87 LFLGDYVDRGE-YSVECISLLFAYKIKYPNYVFLLRGNHECR 127
+ GD + GE S E ++ K VF++ GNH+
Sbjct: 97 IISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDIN 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,279,953
Number of extensions: 321552
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 42
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)