RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11398
(336 letters)
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 259 bits (662), Expect = 5e-86
Identities = 137/274 (50%), Positives = 167/274 (60%), Gaps = 33/274 (12%)
Query: 14 NELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMY 73
ELD WI QL + +L ES+VK LC+KA E+L +E NV V PVT CGD+HGQF DLM
Sbjct: 3 KELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLME 62
Query: 74 LFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVY 133
LF+ GG+ YLF+GDYVDRG YSVE ++LL A K++Y + +LRGNHE R +QVY
Sbjct: 63 LFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVY 122
Query: 134 GFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVK 193
GFYDEC+RKYG VWK FTD FDYLPL AL+D +
Sbjct: 123 GFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQ------------------------- 157
Query: 194 ACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKASNR 253
I C+HGGLS + I +DR++EVP+ G M DLLWSDPDD W S R
Sbjct: 158 -------IFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDR-GGWGISPR 209
Query: 254 GAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
GAG FG I+ + H N L + RAHQ+V EGY
Sbjct: 210 GAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 243
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 263 bits (673), Expect = 2e-85
Identities = 108/280 (38%), Positives = 144/280 (51%), Gaps = 40/280 (14%)
Query: 15 ELDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQFEDLMYL 74
+D + L K+ +L ES + + +L QEKN++ + PVT CGDIHGQF DLM L
Sbjct: 29 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKL 88
Query: 75 FKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYG 134
F+ GG +YLFLGDYVDRG +S+EC+ L+A KI YP +FLLRGNHECR ++ +
Sbjct: 89 FEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 148
Query: 135 FYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKA 194
F EC KY V+ DAFD LPL AL++ +
Sbjct: 149 FKQECKIKY-SERVYDACMDAFDCLPLAALMNQQ-------------------------- 181
Query: 195 CGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWK----- 249
LC+HGGLS + + +I +DR KE P G M D+LWSDP ++ N K
Sbjct: 182 ------FLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHF 235
Query: 250 --ASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
+ RG + + NNL I RAH+ GY
Sbjct: 236 THNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGY 275
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 245 bits (626), Expect = 1e-80
Identities = 116/280 (41%), Positives = 163/280 (58%), Gaps = 41/280 (14%)
Query: 16 LDSWISQLE--------KKIKLPESKVKHLCKKAVELLGQEKNVIVVSTPVTACGDIHGQ 67
+DS I +L K ++L E++++ LC K+ E+ + ++ + P+ CGDIHGQ
Sbjct: 4 IDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQ 63
Query: 68 FEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECR 127
+ DL+ LF+ GG + YLFLGDYVDRG+ S+E I LL AYKIKYP FLLRGNHEC
Sbjct: 64 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 123
Query: 128 STSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEIN 187
S +++YGFYDEC R+Y + +WK FTD F+ LP+ A++D +
Sbjct: 124 SINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEK------------------- 163
Query: 188 MIDRVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETEN 247
I C HGGLS + +I I R +VP +GL+ DLLWSDPD +
Sbjct: 164 -------------IFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLG 210
Query: 248 WKASNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
W ++RG FG + + + H ++L ICRAHQVV++GY
Sbjct: 211 WGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGY 250
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 232 bits (592), Expect = 5e-75
Identities = 91/277 (32%), Positives = 138/277 (49%), Gaps = 38/277 (13%)
Query: 16 LDSWISQLEKKIKLPESKVKHLCKKAVELLGQEKNVIVVST----PVTACGDIHGQFEDL 71
+ + + + KL + + E+L + ++ + +T CGD HGQF DL
Sbjct: 16 MKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDL 75
Query: 72 MYLFKKGGRIGQE-KYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTS 130
+ +F+ G + Y+F GD+VDRG +SVE I LF +K+ YP++ LLRGNHE + +
Sbjct: 76 LNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMN 135
Query: 131 QVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMID 190
Q+YGF E KY +++ F++ F++LPL I+ ++L MHGGL
Sbjct: 136 QIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGL-------------- 180
Query: 191 RVKACGSMEEILCMHGGLSVKCLDIGEINMIDRVKEVPYRGLMTDLLWSDPDDETENWKA 250
S + + +I I+R ++ P G M DLLWSDP +
Sbjct: 181 -----------------FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQ-NGRSI 222
Query: 251 SNRGAGIIFGPAITSLYTHFNNLAYICRAHQVVKEGY 287
S RG FGP +T + NNL YI R+H+V EGY
Sbjct: 223 SKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGY 259
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 66.8 bits (162), Expect = 1e-13
Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 58 VTACGDIHGQFEDLMYLFKK-GGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNY 116
+ GD+HG + +LM G ++ + +GD VDRG +VEC+ L +
Sbjct: 15 IWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLEL------ITFPW 68
Query: 117 VFLLRGNHECRSTSQVYGFYDECMRKYGGV-----------TVWKNFTDAFDYLPL---C 162
+RGNHE + + G + K D LPL
Sbjct: 69 FRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIEL 128
Query: 163 ALIDNRILCMHGGL 176
D + + H
Sbjct: 129 VSKDKKYVICHADY 142
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 58.5 bits (140), Expect = 1e-10
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 57 PVTACGDIHGQFEDLMYLFKK-----GGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKI 111
V +I G L + EKY LG+ V Y E I ++ +
Sbjct: 2 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVI--KDL 59
Query: 112 KYPNYVFLLRGNHECRSTSQVYGFYDECMRKY 143
V ++RG ++ D
Sbjct: 60 TKKENVKIIRGKYDQIIAMSDPHATDPGYIDK 91
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 43.8 bits (102), Expect = 7e-06
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 7/139 (5%)
Query: 58 VTACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNY- 116
+ DIHG + + + G + + LGD ++ G + A ++ N
Sbjct: 4 LMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV 63
Query: 117 ---VFLLRGNHECRSTSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLC---ALIDNRIL 170
V +RGN + + F + + + F AL N +L
Sbjct: 64 AHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVL 123
Query: 171 CMHGGLSVKCLDIGEINMI 189
GEI
Sbjct: 124 VYGHTHLPVAEQRGEIFHF 142
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 41.6 bits (96), Expect = 5e-05
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFL 119
A + G E L K G + +G+ + + S + F +
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYA-AFFRILSEAHLPTAY 68
Query: 120 LRGNHECRSTSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALI 165
+ G + + ++ + E +N + F + L+
Sbjct: 69 VPGPQD----APIWEYLREAANVELVHPEMRNVHETFTFWRGPYLV 110
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 32.0 bits (71), Expect = 0.088
Identities = 13/171 (7%), Positives = 36/171 (21%), Gaps = 25/171 (14%)
Query: 60 ACGDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNY--- 116
A + +F+ L L + + +G+ + E A +
Sbjct: 7 AIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHE 66
Query: 117 ----------------------VFLLRGNHECRSTSQVYGFYDECMRKYGGVTVWKNFTD 154
F++ G ++ + Y+ + + F
Sbjct: 67 NEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHEGFAG 126
Query: 155 AFDYLPLCALIDNRILCMHGGLSVKCLDIGEINMIDRVKACGSMEEILCMH 205
+ V + I + ++ +
Sbjct: 127 WRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIF 177
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 104
Score = 27.1 bits (60), Expect = 1.3
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 88 FLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLRGNHECRSTSQVYGFYDECMRKYG 144
+L D +D +Y+ LL +K+ + ++ + + Y
Sbjct: 43 YLKDSIDDTQYTNTVDKLLKQFKV--------YLNSQNKEEINKHFQSIEAFADTYN 91
>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase
(metapyrocatechase) {Pseudomonas putida, mt2 [TaxId:
303]}
Length = 162
Score = 26.0 bits (56), Expect = 5.5
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 232 LMTDLLWSDPDDETENWKASNRGAGIIFG 260
+ ++ PD + W G I +
Sbjct: 121 VFCGGDYNYPDHKPVTWTTDQLGKAIFYH 149
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 25.2 bits (54), Expect = 9.4
Identities = 10/113 (8%), Positives = 26/113 (23%)
Query: 62 GDIHGQFEDLMYLFKKGGRIGQEKYLFLGDYVDRGEYSVECISLLFAYKIKYPNYVFLLR 121
D H ++ + E + GD+V N +
Sbjct: 7 SDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCK 66
Query: 122 GNHECRSTSQVYGFYDECMRKYGGVTVWKNFTDAFDYLPLCALIDNRILCMHG 174
+ ++ D + + + L + + ++G
Sbjct: 67 LKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYG 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,311,515
Number of extensions: 63241
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 18
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)