BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11399
(865 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/643 (72%), Positives = 534/643 (83%), Gaps = 19/643 (2%)
Query: 79 FNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMV-HA 137
F P RP+ G GR I L+AN F++ +P+ ++HYE+ I+P+KCPR+VNREI+E MV H
Sbjct: 23 FKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHF 82
Query: 138 YSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFA 197
++IFG KPVFDGR NLYT PLPIG D++ELEVTLPGEGKDR+F+V+IKW + VSL A
Sbjct: 83 KTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQA 142
Query: 198 LEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGF 257
L +AL GR +PF+ I ALDVVMRHLPSM YTPVGRSFF+ +G +PLGGGREVWFGF
Sbjct: 143 LHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGF 202
Query: 258 HQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEI 317
HQSVRPS WKMMLNIDVSATAFYK+QPVIEF+CEVLD + + EQ+KPLTDSQRVKFTKEI
Sbjct: 203 HQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEI 262
Query: 318 KGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRF 377
KGLK+EITHCG MKRKYRVCNVTRRPA Q+FPLQ E+GQTVECTVA+YF D++K+ LR+
Sbjct: 263 KGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRY 322
Query: 378 PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSL 437
PHLPCLQVGQE KHTYLPLEVCNIVAGQRCIKKLTD QTSTMI+ATARSAPDR+ EI L
Sbjct: 323 PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 382
Query: 438 VKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFAS 497
++ ADFN D YV EFG+ + + M +V GRVL PP + YGGR +I
Sbjct: 383 MRSADFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAI--------------- 427
Query: 498 KQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMP 557
A P GVWDMR KQF+TG+EI+VWAIACFAPQR E L+SFT+QL+KIS DAGMP
Sbjct: 428 ---ATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMP 484
Query: 558 IIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMAT 617
I GQPCFCKYA G D VEPMFR+LK+T+ LQLVVV+LPGKTPVYAEVKRVGDTVLGMAT
Sbjct: 485 IQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMAT 544
Query: 618 QCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAG 677
QCVQ KNV +T+PQTLSNLCLKINVKLGG+N+IL+P RP VF +PVIF+GADVTHPPAG
Sbjct: 545 QCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAG 604
Query: 678 DNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
D KKPSIAAVVGSMDAHP+RY ATVRVQQHRQEIIQ+L++MVR
Sbjct: 605 DGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVR 647
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 117/155 (75%)
Query: 711 IIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSH 770
I+ + RLFC DK E+ GKSGNIPAGTTVD ITHPTEFDFYLCSH GIQGTSRPSH
Sbjct: 705 IVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSH 764
Query: 771 YHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKXXXX 830
YHVLWDDN F +DELQ LTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV+K
Sbjct: 765 YHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 824
Query: 831 XXXXXXXXXXXXRTPGAMARAITVHADTKKVMYFA 865
R A+A+A+ VH DT + MYFA
Sbjct: 825 AEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 859
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/643 (71%), Positives = 533/643 (82%), Gaps = 19/643 (2%)
Query: 79 FNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMV-HA 137
F P RP+ G GR I L+AN F++ +P+ ++HYE+ I+P+KCPR+VNREI+E MV H
Sbjct: 25 FKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHF 84
Query: 138 YSKIFGALKPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFA 197
++IFG KPVFDGR NLYT PLPIG D++ELEVTLPGEGKDR+F+V+IKW + VSL A
Sbjct: 85 KTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQA 144
Query: 198 LEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGF 257
L +AL GR +PF+ I ALDVVMRHLPSM YTPVGRSFF+ +G +PLGGGREVWFGF
Sbjct: 145 LHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGF 204
Query: 258 HQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEI 317
HQSVRPS WKMMLNIDVSATAFYK+QPVIEF+CEVLD + + EQ+KPLTDSQRVKFTKEI
Sbjct: 205 HQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEI 264
Query: 318 KGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRF 377
KGLK+EITHCG MKRKYRVCNVTRRPA Q+FPLQ E+GQTVECTVA+YF D++K+ LR+
Sbjct: 265 KGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRY 324
Query: 378 PHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSL 437
PHLPCLQVGQE KHTYLPLEVCNIVAGQRCIKKLTD QTSTMI+ATARSAPDR+ EI L
Sbjct: 325 PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 384
Query: 438 VKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFAS 497
++ A FN D YV EFG+ + + M +V GRVL PP + YGGR +I
Sbjct: 385 MRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAI--------------- 429
Query: 498 KQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMP 557
A P GVWDMR KQF+TG+EI+VWAIACFAPQR E L+SFT+QL+KIS DAGMP
Sbjct: 430 ---ATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMP 486
Query: 558 IIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMAT 617
I GQPCFCKYA G D VEPMFR+LK+T+ LQLVVV+LPGKTPVYAEVKRVGDTVLGMAT
Sbjct: 487 IQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMAT 546
Query: 618 QCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAG 677
QCVQ KNV +T+PQTLSNLCLKINVKLGG+N+IL+P RP VF +PVIF+GADVTHPPAG
Sbjct: 547 QCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAG 606
Query: 678 DNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVR 720
D KKPSIAAVVGSMDAHP+RY ATVRVQQHRQEIIQ+L++MVR
Sbjct: 607 DGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVR 649
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 117/155 (75%)
Query: 711 IIQELSSMVRLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSH 770
I+ + RLFC DK E+ GKSGNIPAGTTVD ITHPTEFDFYLCSH GIQGTSRPSH
Sbjct: 707 IVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSH 766
Query: 771 YHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKXXXX 830
YHVLWDDN F +DELQ LTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV+K
Sbjct: 767 YHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 826
Query: 831 XXXXXXXXXXXXRTPGAMARAITVHADTKKVMYFA 865
R A+A+A+ VH DT + MYFA
Sbjct: 827 AEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz
Domain
Length = 169
Score = 339 bits (870), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 159/169 (94%), Positives = 166/169 (98%)
Query: 276 ATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYR 335
TAFYK+QPVI+FMCEVLDIRD+NEQRKPLTDSQRVKFTKEIKGLKIEITHCG M+RKYR
Sbjct: 1 GTAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYR 60
Query: 336 VCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLP 395
VCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKY+MKLR+PHLPCLQVGQEHKHTYLP
Sbjct: 61 VCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLP 120
Query: 396 LEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFN 444
LEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREI +LVKRADFN
Sbjct: 121 LEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFN 169
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex Of
Deoxynucleotide Overhang
Length = 149
Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 122/145 (84%), Positives = 136/145 (93%)
Query: 282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTR 341
+QPVIEFMCEVLDIR+++EQ KPLTDSQRV+FTKEIKGLK+E+THCG MKRKYRVCNVTR
Sbjct: 5 AQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTR 64
Query: 342 RPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNI 401
RPA Q+FPLQLE+GQTVECTVA+YF KY ++L++PHLPCLQVGQE KHTYLPLEVCNI
Sbjct: 65 RPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNI 124
Query: 402 VAGQRCIKKLTDMQTSTMIKATARS 426
VAGQRCIKKLTD QTSTMIKATARS
Sbjct: 125 VAGQRCIKKLTDNQTSTMIKATARS 149
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex
Length = 149
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 134/147 (91%)
Query: 280 YKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNV 339
+ +QPVIEF CEVLDIR+++EQ KPLTDSQRV+FTKEIKGLK+E+THCG KRKYRVCNV
Sbjct: 3 HXAQPVIEFXCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQXKRKYRVCNV 62
Query: 340 TRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVC 399
TRRPA Q+FPLQLE+GQTVECTVA+YF KY ++L++PHLPCLQVGQE KHTYLPLEVC
Sbjct: 63 TRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVC 122
Query: 400 NIVAGQRCIKKLTDMQTSTMIKATARS 426
NIVAGQRCIKKLTD QTST IKATARS
Sbjct: 123 NIVAGQRCIKKLTDNQTSTXIKATARS 149
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/136 (80%), Positives = 122/136 (89%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
KQF+TG+EI+VWAIACFAPQR E L+SFT+QL+KIS DAGMPI GQPCFCKYA G D
Sbjct: 3 KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGAD 62
Query: 573 QVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQT 632
VEPMFR+LK+T+ LQLVVV+LPGKTPVYAEVKRVGDTVLGMATQCVQ KNV +T+PQT
Sbjct: 63 SVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT 122
Query: 633 LSNLCLKINVKLGGIN 648
LSNLCLKINVKLGG+N
Sbjct: 123 LSNLCLKINVKLGGVN 138
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/136 (77%), Positives = 119/136 (87%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
KQF+TG+EI+VWAIACFAPQR E L+SFT+QL+KIS DAG PI GQPCFCKYA G D
Sbjct: 3 KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGXPIQGQPCFCKYAQGAD 62
Query: 573 QVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQT 632
VEP FR+LK+T+ LQLVVV+LPGKTPVYAEVKRVGDTVLG ATQCVQ KNV +T+PQT
Sbjct: 63 SVEPXFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGXATQCVQXKNVQRTTPQT 122
Query: 633 LSNLCLKINVKLGGIN 648
LSNLCLKINVKLGG+N
Sbjct: 123 LSNLCLKINVKLGGVN 138
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 136/324 (41%), Gaps = 64/324 (19%)
Query: 552 NDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGK-TPVYAEVKRVGD 610
N G+PI + + P + F +K + Q VVV+LP K +Y VKR D
Sbjct: 43 NRTGIPINPRFSPGMSMSVPGSEKEFFAKVKELMSSHQFVVVLLPRKDVAIYNMVKRAAD 102
Query: 611 TVLGMATQCVQAKNVNKTSPQT--LSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMG 668
G+ T C A+ T Q +N+ LK+N+K GG N + I P + + +G
Sbjct: 103 ITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPI-PLLAKGKTMVVG 161
Query: 669 ADVTHP---PAGDN--KKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQE-----LSSM 718
DVTHP AG + PSI +V ++D H ++ A V H QE + E +
Sbjct: 162 YDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTR 221
Query: 719 VRLFCADKKEQSGKSGNI-------------------------------PAGTTVDIGIT 747
+ L+ ++ NI PAG I +
Sbjct: 222 LELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITL- 280
Query: 748 HPTEFDFYLCSHQGIQGTSRPSHYHVLWDD------NHFDADELQCLTYQLCHTYVRCTR 801
+ S +G S +HY VL D+ + AD L+ LT+ +C+ + R T+
Sbjct: 281 --------IVSVKG----SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATK 328
Query: 802 SVSIPAPAYYAHLVAFRARYHLVE 825
+VSI PAYYA LV RAR H E
Sbjct: 329 AVSICPPAYYADLVCDRARIHQKE 352
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Query: 700 ATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKS------GNIPAGTTVDIGITHPTEFD 753
ATV+ Q R IQE + K + G+ GN+ GT VD GIT FD
Sbjct: 884 ATVKRNQVRFIPIQE----------NAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFD 933
Query: 754 FYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAH 813
F++ SHQ ++GT P HY L+D+N +D LQ + LC+ + R T SV +PAP YYA
Sbjct: 934 FFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYAD 993
Query: 814 LVAFRA 819
L+ RA
Sbjct: 994 LLCTRA 999
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/422 (23%), Positives = 171/422 (40%), Gaps = 77/422 (18%)
Query: 355 NGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDM 414
N + + YF KY + L++P + + +G K+ +P E IV GQ+ ++ D
Sbjct: 416 NEKPININTIDYFKRKYDITLKYPDMKLVNLG--GKNDVVPPECLTIVPGQKLKGQIFD- 472
Query: 415 QTSTMIKATARSAPDREREIQSL----VKRADFNNDAYVHEFGLTISNSMMEVRGRVLPP 470
T T I +A ++ I L +KR +++ + M V R+L
Sbjct: 473 -TKTYIDFSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPHNSAYQFMRVPSRILDA 531
Query: 471 PKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTG----VEIRVWAI 526
P +Q+ + S+ + S + +K + + G W+M+G QF + V +R I
Sbjct: 532 PVVQF--KESTFEYKDKS------YGTKHEE--SKGNWNMKGHQFISTPAKQVNLRAIFI 581
Query: 527 --------ACFAPQRTVREDSLRSFTQQLQKISNDAGMPII------------------- 559
A + + D S +QL N +G PI+
Sbjct: 582 NNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGR 641
Query: 560 ----------------GQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGK-TPVY 602
G P F T P ++ + L++ ++ V+ G + VY
Sbjct: 642 GGRGSRGGRGGRGAPSGPPTF---ETSPGEIS-LLNLLENIPSNTYILYVLRRGNDSAVY 697
Query: 603 AEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPS----IRPK 658
+K + D G CV N K S Q SN+ +K+N+KL G N L + K
Sbjct: 698 DRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDK 757
Query: 659 VFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQH-RQEIIQELSS 717
N P++ +G+DVTH P D SIA++VGS D +++ +Q +EII + S
Sbjct: 758 ESNLPILVLGSDVTHYPEKDQN--SIASLVGSYDDKFTQFPGDYMLQDGPGEEIITNVGS 815
Query: 718 MV 719
++
Sbjct: 816 LM 817
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 720 RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDD-- 777
R F D K KS + GT VD G+T+ +DF+L +H +QGT+R +HY VL D+
Sbjct: 290 RFFPTDPKHIHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIF 349
Query: 778 ----NHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVE 825
+ AD L+ LT+ +C+ + R T++VSI PAYYA LV RAR H E
Sbjct: 350 RADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKE 401
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 552 NDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGK-TPVYAEVKRVGD 610
N G+PI + + P + F +K + Q VVV+LP K +Y VKR D
Sbjct: 43 NRTGIPINPRFSPGMSMSVPGSEKEFFAKVKELMSSHQFVVVLLPRKDVAIYNMVKRAAD 102
Query: 611 TVLGMATQCVQAKNVNKTSPQT--LSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMG 668
G+ T C A+ T Q +N+ LK+N+K GG N + I P + + +G
Sbjct: 103 ITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPI-PLLAKGKTMVVG 161
Query: 669 ADVTHP---PAGDN--KKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQE 714
DVTHP AG + PSI +V ++D H ++ A V H QE + E
Sbjct: 162 YDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTE 212
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 512 GKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGP 571
K+ G + W C R V+++ R+F Q+L ++ +GM +P + P
Sbjct: 2 NKKMINGGTVNNWI--CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARP 59
Query: 572 DQVEPMF--RYLKSTFQALQ-----LVVVVLPGK--TPVYAEVKRVGDTVLGMATQCVQA 622
+QVE + RY +T + Q L++V+LP K + +Y ++KR+ +T LG+ +QC
Sbjct: 60 EQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDKKNSDLYGDLKRICETELGIVSQCCLT 119
Query: 623 KNVNKTSPQTLSNLCLKINVKLGGINSILV 652
K+V K S Q ++N+ LKINVK+GG N++LV
Sbjct: 120 KHVFKMSKQYMANVALKINVKVGGRNTVLV 149
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 10/148 (6%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
K+ G + W C R V+++ R+F Q+L ++ +GM +P + P+
Sbjct: 3 KKMINGGTVNNWI--CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 573 QVEPMF--RYLKSTFQALQ-----LVVVVLPGKT-PVYAEVKRVGDTVLGMATQCVQAKN 624
QVE + RY +T + Q L++V+LP +Y ++KR+ +T LG+ +QC K+
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 625 VNKTSPQTLSNLCLKINVKLGGINSILV 652
V K S Q ++N+ LKINVK+GG N++LV
Sbjct: 121 VFKMSKQYMANVALKINVKVGGRNTVLV 148
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
K+ G ++ W F+ + + + F +QL + GM QP + P+
Sbjct: 3 KKMVNGAKVTSWTCVSFSTR--IDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPE 60
Query: 573 QVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQT 632
+E + LQL++V+LP T Y ++KR+ +T LG+ +QC Q + VNK + Q
Sbjct: 61 HIEEALLDIHKRAPGLQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQY 120
Query: 633 LSNLCLKINVKLGGINSIL 651
+ N+ LKINVK GG N++L
Sbjct: 121 MENVALKINVKTGGRNTVL 139
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 10/147 (6%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
K+ G + W C R V+++ R+F Q+L ++ +GM +P + P+
Sbjct: 3 KKMINGGTVNNWI--CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 573 QVEPMF--RYLKSTFQALQ-----LVVVVLPGKT-PVYAEVKRVGDTVLGMATQCVQAKN 624
QVE + RY +T + Q L++V+LP +Y ++KR+ +T LG+ +QC K+
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 625 VNKTSPQTLSNLCLKINVKLGGINSIL 651
V K S Q ++N+ LKINVK+GG N++L
Sbjct: 121 VFKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
K+ G + W C R V+++ R+F Q+L + +G +P + P+
Sbjct: 3 KKXINGGTVNNWI--CINFSRQVQDNLARTFCQELAQXCYVSGXAFNPEPVLPPVSARPE 60
Query: 573 QVEPMF--RYLKSTFQALQ-----LVVVVLPGKT-PVYAEVKRVGDTVLGMATQCVQAKN 624
QVE + RY +T + Q L++V+LP +Y ++KR+ +T LG+ +QC K+
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 625 VNKTSPQTLSNLCLKINVKLGGINSIL 651
V K S Q +N+ LKINVK+GG N++L
Sbjct: 121 VFKXSKQYXANVALKINVKVGGRNTVL 147
>pdb|1VYN|A Chain A, Structure And Nucleic Acid Binding Of The Drosophila
Argonaute2 Paz Domain
Length = 143
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 332 RKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKH 391
R YRV ++R PA ++F +G+ V T+A YF + L+FP L CL VG K
Sbjct: 55 RVYRVNGLSRAPASSETFE---HDGKKV--TIASYFHSR-NYPLKFPQLHCLNVGSSIKS 108
Query: 392 TYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARS 426
LP+E+C+I GQ +K Q + MIK A S
Sbjct: 109 ILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 272 IDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMK 331
+D+S +F S P+IE++ +N D R ++G+ + T + +
Sbjct: 374 VDISHKSFPISMPMIEYLERFSLKAKINNTTN--LDYSRRFLEPFLRGINVVYTPPQSFQ 431
Query: 332 ---RKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQE 388
R YRV ++R PA ++F +G+ V T+A YF + L+FP L CL VG
Sbjct: 432 SAPRVYRVNGLSRAPASSETFE---HDGKKV--TIASYFHSR-NYPLKFPQLHCLNVGSS 485
Query: 389 HKHTYLPLEVCNIVAGQRCIKK 410
K LP+E+C+I GQ +K
Sbjct: 486 IKSILLPIELCSIEEGQALNRK 507
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
pdb|1T2S|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
Length = 123
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 332 RKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKH 391
R YRV ++R PA ++F +G+ V T+A YF + L+FP L CL VG K
Sbjct: 55 RVYRVNGLSRAPASSETFE---HDGKKV--TIASYFHSR-NYPLKFPQLHCLNVGSSIKS 108
Query: 392 TYLPLEVCNIVAGQ 405
LP+E+C+I GQ
Sbjct: 109 ILLPIELCSIEEGQ 122
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex
With 3'-End 2'-O-Methylated Rna
Length = 124
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 332 RKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKH 391
R YRV ++R PA ++F +G+ V T+A YF + L+FP L CL VG K
Sbjct: 53 RVYRVNGLSRAPASSETFE---HDGKKV--TIASYFHSR-NYPLKFPQLHCLNVGSSIKS 106
Query: 392 TYLPLEVCNIVAGQ 405
LP+E+C+I GQ
Sbjct: 107 ILLPIELCSIEEGQ 120
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 571 PDQVEPMFRYLKSTFQALQLVVVVLPGK-TPVYAEVKRVGDTVLGMATQCVQAKNVNKTS 629
P + F +K + Q VVV+LP K +Y VKR D G+ T C A+ T
Sbjct: 62 PGSEKEFFAKVKELMSSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTK 121
Query: 630 PQT--LSNLCLKINVKLGGIN 648
Q +N+ LK+N+K GG N
Sbjct: 122 GQLGYFANVGLKVNLKFGGTN 142
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 590 LVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGIN 648
LV+ + K Y +K + +T LG+ TQC K Q +NL LK+N K+GG N
Sbjct: 89 LVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSN 147
>pdb|4I6K|A Chain A, Crystal Structure Of Probable 2-Pyrone-4,6-Dicarboxylic
Acid Hydrolase Abaye1769 (Target Efi-505029) From
Acinetobacter Baumannii With Citric Acid Bound
Length = 294
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 29/165 (17%)
Query: 423 TARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSI 482
TAR APD E +QS + D +N + H G+ + S + + + QY R+ I
Sbjct: 44 TARYAPDYEATVQSFISHLDEHN--FTH--GVLVQPSFLGTNNQAMLNAIQQYPDRLKGI 99
Query: 483 TA--------QVNSMSSQG-------LFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIA 527
++ ++ +QG LF AL N+ W ++F VE W +
Sbjct: 100 AVVQHTTTFNELVNLKAQGIVGVRLNLFGLNLPAL-NTPDW----QKFLRNVESLNWQVE 154
Query: 528 CFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPD 572
AP + L QL + S D + G+ K PD
Sbjct: 155 LHAPPKY-----LVQLLPQLNEYSFDVVIDHFGRVDPVKGIEDPD 194
>pdb|2XZ7|A Chain A, Crystal Structure Of The Phosphoenolpyruvate-Binding
Domain Of Enzyme I In Complex With Phosphoenolpyruvate
From The Thermoanaerobacter Tengcongensis Pep-Sugar
Phosphotransferase System (Pts)
Length = 325
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 262 RPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVN---EQRKPLTDSQRVKFTKEIK 318
RP +K L + A+A+ Q + + V ++R N E+ K D + VK+ KEIK
Sbjct: 118 RPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEEVKAELDREGVKYDKEIK 177
Query: 319 -GLKIEI 324
G+ +EI
Sbjct: 178 VGIMVEI 184
>pdb|2XZ9|A Chain A, Crystal Structure From The Phosphoenolpyruvate-Binding
Domain Of Enzyme I In Complex With Pyruvate From The
Thermoanaerobacter Tengcongensis Pep-Sugar
Phosphotransferase System (Pts)
pdb|2XZ9|B Chain B, Crystal Structure From The Phosphoenolpyruvate-Binding
Domain Of Enzyme I In Complex With Pyruvate From The
Thermoanaerobacter Tengcongensis Pep-Sugar
Phosphotransferase System (Pts)
Length = 324
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 262 RPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVN---EQRKPLTDSQRVKFTKEIK 318
RP +K L + A+A+ Q + + V ++R N E+ K D + VK+ KEIK
Sbjct: 117 RPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEEVKAELDREGVKYDKEIK 176
Query: 319 -GLKIEI 324
G+ +EI
Sbjct: 177 VGIMVEI 183
>pdb|2BG5|A Chain A, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
pdb|2BG5|B Chain B, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
pdb|2BG5|C Chain C, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
pdb|2BG5|D Chain D, Crystal Structure Of The Phosphoenolpyruvate-Binding
Enzyme I-Domain From The Thermoanaerobacter
Tengcongensis Pep: Sugar Phosphotransferase System (Pts)
Length = 324
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 262 RPSQWKMMLNIDVSATAFYKSQ---PVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIK 318
RP +K L + A+A+ Q P I + EV + E+ K D + VK+ KEIK
Sbjct: 117 RPDIFKTQLRAILRASAYGNVQIXYPXISSVEEVRKANSILEEVKAELDREGVKYDKEIK 176
Query: 319 -GLKIEI 324
G+ +EI
Sbjct: 177 VGIXVEI 183
>pdb|2J9O|A Chain A, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|B Chain B, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|C Chain C, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|D Chain D, Structure Of Pbp-A, L158e Mutant
pdb|2JBF|A Chain A, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
pdb|2JBF|B Chain B, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
pdb|2JBF|C Chain C, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
pdb|2JBF|D Chain D, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G
Length = 298
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 27/115 (23%)
Query: 623 KNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHP--PAGDNK 680
K N TSP+ L+ L LKI G IL P R ++ + M VT+ PAG K
Sbjct: 162 KGTNTTSPRDLATLMLKI-----GQGEILSPRSRDRLLD----IMRRTVTNTLLPAGLGK 212
Query: 681 KPSIAAVVGSM-----DA------HPSRYAATVRVQQ-----HRQEIIQELSSMV 719
+IA G + DA + RY A + V++ E+I+++S MV
Sbjct: 213 GATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMV 267
>pdb|2J7V|A Chain A, Structure Of Pbp-A
pdb|2J7V|B Chain B, Structure Of Pbp-A
pdb|2J7V|C Chain C, Structure Of Pbp-A
pdb|2J7V|D Chain D, Structure Of Pbp-A
pdb|2J8Y|A Chain A, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
pdb|2J8Y|B Chain B, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
pdb|2J8Y|C Chain C, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
pdb|2J8Y|D Chain D, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
Length = 298
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 27/115 (23%)
Query: 623 KNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHP--PAGDNK 680
K N TSP+ L+ L LKI G IL P R ++ + M VT+ PAG K
Sbjct: 162 KGTNTTSPRDLATLMLKI-----GQGEILSPRSRDRLLD----IMRRTVTNTLLPAGLGK 212
Query: 681 KPSIAAVVGSM-----DA------HPSRYAATVRVQQ-----HRQEIIQELSSMV 719
+IA G + DA + RY A + V++ E+I+++S MV
Sbjct: 213 GATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMV 267
>pdb|1L2L|A Chain A, Crystal Structure Of Adp-Dependent Glucokinase From A
Pyrococcus Horikoshii
Length = 457
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 91 GRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYS 139
G+PI L H +I G H E PD+ V EI++ + H YS
Sbjct: 246 GKPIKLVREHLKILNDLGIRAHLEFAFTPDEV---VRLEIVKLLKHFYS 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,072,044
Number of Sequences: 62578
Number of extensions: 966864
Number of successful extensions: 1855
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 35
length of query: 865
length of database: 14,973,337
effective HSP length: 107
effective length of query: 758
effective length of database: 8,277,491
effective search space: 6274338178
effective search space used: 6274338178
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)