Query psy11399
Match_columns 865
No_of_seqs 188 out of 1096
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:26:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1E-144 3E-149 1318.5 76.4 740 77-865 29-900 (900)
2 KOG1041|consensus 100.0 9E-129 2E-133 1168.5 69.4 751 78-865 42-876 (876)
3 KOG1042|consensus 100.0 1E-109 2E-114 909.8 53.3 646 87-821 88-828 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 2.8E-80 6E-85 705.2 34.8 353 447-823 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.1E-73 2.4E-78 657.2 39.2 369 416-820 3-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 4.8E-66 1E-70 583.4 32.9 320 459-821 1-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 5E-52 1.1E-56 455.4 19.7 229 590-823 1-301 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 1.8E-32 3.8E-37 311.8 19.0 218 586-820 109-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 1.6E-21 3.5E-26 187.9 11.1 133 283-426 1-135 (135)
10 cd02825 PAZ PAZ domain, named 99.8 6.2E-19 1.3E-23 164.7 11.3 111 282-401 1-114 (115)
11 cd02846 PAZ_argonaute_like PAZ 99.8 9.8E-19 2.1E-23 163.5 12.2 114 282-402 1-114 (114)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 1.7E-16 3.7E-21 147.8 10.0 105 283-402 2-114 (117)
13 PF08699 DUF1785: Domain of un 99.5 2.6E-14 5.7E-19 112.5 4.3 52 230-282 1-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.3 4.4E-12 9.6E-17 120.8 6.8 83 313-402 27-132 (135)
15 cd02843 PAZ_dicer_like PAZ dom 98.4 5.3E-07 1.2E-11 83.1 6.5 66 315-386 39-105 (122)
16 COG1431 Argonaute homolog, imp 98.4 6.3E-06 1.4E-10 92.8 15.6 260 537-821 355-668 (685)
17 KOG1924|consensus 94.9 0.072 1.6E-06 62.7 7.8 21 25-45 525-545 (1102)
18 PF13032 DUF3893: Domain of un 91.5 0.4 8.7E-06 46.2 6.0 57 765-825 66-122 (138)
19 KOG1924|consensus 90.2 0.85 1.8E-05 54.2 8.0 15 364-378 868-882 (1102)
20 KOG1925|consensus 64.1 8.1 0.00018 43.9 4.3 46 32-81 223-268 (817)
21 KOG2675|consensus 60.0 6.4 0.00014 44.3 2.5 31 30-60 232-265 (480)
22 cd06559 Endonuclease_V Endonuc 54.3 1.4E+02 0.003 31.0 11.1 32 779-817 176-207 (208)
23 KOG1923|consensus 45.4 42 0.00091 40.7 6.2 20 46-65 310-329 (830)
24 KOG2792|consensus 34.3 1.8E+02 0.004 31.0 8.2 96 505-609 119-219 (280)
25 PF02772 S-AdoMet_synt_M: S-ad 31.0 47 0.001 31.3 3.0 29 794-822 12-40 (120)
26 PRK09752 adhesin; Provisional 30.7 53 0.0011 42.1 4.2 11 79-89 950-960 (1250)
27 PRK00766 hypothetical protein; 30.6 94 0.002 31.9 5.4 36 778-820 152-187 (194)
28 PF00763 THF_DHG_CYH: Tetrahyd 27.9 2.3E+02 0.005 26.4 7.2 63 579-643 21-85 (117)
29 COG5178 PRP8 U5 snRNP spliceos 27.8 64 0.0014 40.8 4.1 17 798-814 1333-1349(2365)
30 PRK15319 AIDA autotransporter- 27.0 97 0.0021 41.6 5.7 11 447-457 1943-1953(2039)
31 PHA02669 hypothetical protein; 22.9 1.4E+02 0.0029 29.3 4.6 38 28-68 137-174 (210)
32 KOG3851|consensus 20.6 58 0.0013 35.8 1.8 37 333-374 383-419 (446)
33 PF01949 DUF99: Protein of unk 20.3 83 0.0018 32.0 2.8 34 778-818 147-180 (187)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.3e-144 Score=1318.47 Aligned_cols=740 Identities=33% Similarity=0.584 Sum_probs=626.6
Q ss_pred CCCCCCCCCCCCCCCCeeEEEeeEEEeec--CceeEEEEEEEEccC----CCChhhHHHHHHHHHHHHhhhcCCCceEEe
Q psy11399 77 PMFNCPRRPNLGREGRPIVLRANHFQISM--PRGFVHHYEIQIQPD----KCPRKVNREIIETMVHAYSKIFGALKPVFD 150 (865)
Q Consensus 77 ~~~~~p~RP~~Gt~G~~i~L~tN~f~l~~--p~~~iy~YdV~i~p~----~~~~~~~r~i~~~l~~~~~~~f~~~~~vyD 150 (865)
....+++||||||.|++|.|+||||+|.+ |+..+|||||+|+|+ ..+++++++|+++++++++..+.+..++||
T Consensus 29 ~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~D 108 (900)
T PLN03202 29 PKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYD 108 (900)
T ss_pred cccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeec
Confidence 34478899999999999999999999997 467899999999974 334677888988887766544544468999
Q ss_pred CCceEEecCCCCCCCCceEEEEEcCCC----------------------------CCCcEEEEEEEEeeeecHHHHHHHH
Q psy11399 151 GRNNLYTRDPLPIGNDRMELEVTLPGE----------------------------GKDRVFRVAIKWQAQVSLFALEEAL 202 (865)
Q Consensus 151 G~~~LyS~~~L~~~~~~~~~~v~~~~~----------------------------~~~~~~~V~Ik~~~~i~l~~L~~~l 202 (865)
|+++|||+.+|+.+. .++.|.++.+ ++.+.|+|+|+++++|++++|.+|+
T Consensus 109 g~~~l~s~~~L~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l 186 (900)
T PLN03202 109 GEKSLFTVGALPQNK--LEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANAL 186 (900)
T ss_pred CccceEECccCCCCC--ceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHH
Confidence 999999999999744 3555544311 1257899999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHhcCCCC-ccccccccccCCCCCCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeec
Q psy11399 203 EGRTRQIPFDAILALDVVMRHLPSM-TYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYK 281 (865)
Q Consensus 203 ~g~~~~~~~~~iq~Lniilr~~~~~-~~~~~Gr~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~ 281 (865)
.|.....+.++||+||+|||+.++. +++.+||+||........++++|+|+|+||++|||+++++++||||+++++|++
T Consensus 187 ~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~ 266 (900)
T PLN03202 187 RGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQ 266 (900)
T ss_pred cCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeec
Confidence 9998888889999999999998765 488899999986644555789999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCC-----C
Q psy11399 282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLEN-----G 356 (865)
Q Consensus 282 ~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~-----g 356 (865)
++||+|+|.++.+..+ ....++.++.++|+|++|.++|.+ ++|+|.+|++.+++..+|.++..+ +
T Consensus 267 ~~~l~~~l~~~~~~~~-------~~~~~~~~~~~~lkGl~V~t~~~~---k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~ 336 (900)
T PLN03202 267 PGPVVDFLIANQNVRD-------PFQIDWSKAKRMLKNLRVKVSPSN---QEYKITGLSEKPCKEQTFSLKQRNGNGNEV 336 (900)
T ss_pred CCcHHHHHHHhcCcCC-------ccchhHHHHHHHhcCCEEEEecCC---ceEEEeeccCCCCcceEEEcccCCcccccC
Confidence 9999999998764321 112345679999999999999863 789999999999999999654221 1
Q ss_pred ceeeeeHHHHHHHhCCCccCCC-CCceEEeCCCCcccccccceeeecCCccccccCChHHHHHHHHHhcCChhHHHHHHH
Q psy11399 357 QTVECTVAKYFLDKYKMKLRFP-HLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQ 435 (865)
Q Consensus 357 ~~~~iTV~eYf~~~Y~i~L~~p-~lPlv~~g~~~~~~ylP~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~R~~~i~ 435 (865)
.+.+|||+|||+++||++|+|| ++|||++|+..+++|||||||.|.+||+++.+|++.|+++||++++.+|.+|.+.|.
T Consensus 337 ~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~ 416 (900)
T PLN03202 337 ETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLT 416 (900)
T ss_pred CcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHH
Confidence 2347999999999999999996 999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCchhhcccCeEEcCcceEeeeEEeCCCceecCCccccccccccccccccccccccccCCCCccccccCcee
Q psy11399 436 SLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQF 515 (865)
Q Consensus 436 ~~~~~l~~~~~~~l~~fGi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f 515 (865)
++++.++++.+++|++|||+|+++|++|+||+|++|+|.|+++.. ..|.+|+||+++++|
T Consensus 417 ~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~--------------------~~p~~g~Wn~~~~kf 476 (900)
T PLN03202 417 DALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGED--------------------FFPRNGRWNFNNKKL 476 (900)
T ss_pred HHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcc--------------------cCCCCCceecCCCEe
Confidence 999988888889999999999999999999999999999987532 356789999999999
Q ss_pred ecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeec-------cCCCCCHHHHHHHHHhhc-CC
Q psy11399 516 YTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKY-------ATGPDQVEPMFRYLKSTF-QA 587 (865)
Q Consensus 516 ~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~-------~~~~~~~e~~~~~l~~~~-~~ 587 (865)
+.|+.+++|+|+++... ..++.|++.|.+.|+.+||.+ ..|..... ....+.++.+++.+++.. ..
T Consensus 477 ~~~~~l~~W~vv~~~~~-----~~~~~f~~~l~~~~~~~G~~i-~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 550 (900)
T PLN03202 477 VEPTKIERWAVVNFSAR-----CDIRHLVRDLIKCGEMKGINI-EPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGP 550 (900)
T ss_pred cCCCccceEEEEEecCc-----hhHHHHHHHHHHHHHHCCcee-CCCccccccccccccccchHHHHHHHHHHHHhccCC
Confidence 99999999999987532 258899999999999999999 44532211 111245788888887754 45
Q ss_pred ceEEEEEeCCC-Ch-hhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcceeccCC---CCCCccCC
Q psy11399 588 LQLVVVVLPGK-TP-VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPS---IRPKVFNE 662 (865)
Q Consensus 588 ~~lvlvIlp~~-~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l~~~---~~~~l~~~ 662 (865)
++|+|||||++ +. +|+.||++||.+.||+||||...+ .++|+++||+||||+||||+||.+... ..+++...
T Consensus 551 ~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~---~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~ 627 (900)
T PLN03202 551 PQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTR---VNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKV 627 (900)
T ss_pred CeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccc---cchHHHHHHHHHHhhhhCCcceeecccccccCccccCC
Confidence 89999999974 43 899999999999999999996543 478999999999999999999987532 24556678
Q ss_pred CeEEEeeeecCCCCCCCCCCeEEEEeeccC-CCCCeeeEEEEEccChhHHHHHH---------HHHH-------------
Q psy11399 663 PVIFMGADVTHPPAGDNKKPSIAAVVGSMD-AHPSRYAATVRVQQHRQEIIQEL---------SSMV------------- 719 (865)
Q Consensus 663 ~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d-~~~~~y~~~~~~Q~~~~Eii~~l---------~~mv------------- 719 (865)
+|||||+||+||++++...|||||||||+| .++++|.+.+++|.+++|+|++| .+|+
T Consensus 628 ~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~ 707 (900)
T PLN03202 628 PTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGK 707 (900)
T ss_pred CeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCC
Confidence 999999999999988655799999999999 57999999999999999999875 3443
Q ss_pred -------------------------------------------------------HhhcccccccCCCCCCCCCcceecc
Q psy11399 720 -------------------------------------------------------RLFCADKKEQSGKSGNIPAGTTVDI 744 (865)
Q Consensus 720 -------------------------------------------------------Rff~~~~~~~~~~~~N~~pGTvVD~ 744 (865)
|||+. ++.+||+||||||+
T Consensus 708 ~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~------~~~~N~~pGTvVD~ 781 (900)
T PLN03202 708 RKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQA------GSPDNVPPGTVVDN 781 (900)
T ss_pred CCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeecc------CCCCCCCCceEecc
Confidence 78864 35699999999999
Q ss_pred cccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhh
Q psy11399 745 GITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV 824 (865)
Q Consensus 745 ~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~ 824 (865)
+||||..||||||||.++|||||||||+|||||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||.
T Consensus 782 ~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~ 861 (900)
T PLN03202 782 KICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMK 861 (900)
T ss_pred ccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccCCCCCccccCCCCCCChhhhhhhccccccCcCCeeeC
Q psy11399 825 EKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA 865 (865)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~m~~~ 865 (865)
. .+++.++++++++.+....+......||++++++|||+
T Consensus 862 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 862 F--EDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred c--cCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence 2 22222222222222222333445678999999999996
No 2
>KOG1041|consensus
Probab=100.00 E-value=9.2e-129 Score=1168.52 Aligned_cols=751 Identities=41% Similarity=0.677 Sum_probs=649.8
Q ss_pred CCCCCCCCCCCCCCCeeEEEeeEEEeec--Ccee-EEEEEEEEccCCCChhhHH-HHHHHHHHHHh-hhcCCCceEEeCC
Q psy11399 78 MFNCPRRPNLGREGRPIVLRANHFQISM--PRGF-VHHYEIQIQPDKCPRKVNR-EIIETMVHAYS-KIFGALKPVFDGR 152 (865)
Q Consensus 78 ~~~~p~RP~~Gt~G~~i~L~tN~f~l~~--p~~~-iy~YdV~i~p~~~~~~~~r-~i~~~l~~~~~-~~f~~~~~vyDG~ 152 (865)
....+.||+.|+.|++|.|.+|||.+++ ++.. ++||+|++.++..++...+ .+++.+++..+ ..|++..++|||+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~ 121 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQ 121 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCC
Confidence 5778889999999999999999999765 6655 9999999999988777775 55555554432 3356666779999
Q ss_pred ceEEecCCCCCCCCceEEEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHHHHHHHHHhcCCCCc-ccc
Q psy11399 153 NNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMT-YTP 231 (865)
Q Consensus 153 ~~LyS~~~L~~~~~~~~~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~-~~~ 231 (865)
++|||..+|+....+.+|.+..+++... |+++|+++.++.+..+..++.+.....+.+++|++++++++.++.. +..
T Consensus 122 ~~lyt~~~~~~~~~~~~~~~~~~~~~~~--~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~ 199 (876)
T KOG1041|consen 122 KTLYTKLELPEGVVTLDFDVISPKEWKK--FKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQGLNN 199 (876)
T ss_pred ceeEeccccccccceEEEEecCCCCCcc--eEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchhcccc
Confidence 9999977777534556677777665433 9999999999999999999998887888999999999999998766 999
Q ss_pred ccccccCCCCCCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeeccccHHHHHHHHhccccccccCCCCChHHHH
Q psy11399 232 VGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRV 311 (865)
Q Consensus 232 ~Gr~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~ 311 (865)
+|++||.........+++|.|+|.||++|+|+.+|+++||+|+++++||++.+|+++++++++... +.+.+....
T Consensus 200 ~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~-----~~~~~~~~~ 274 (876)
T KOG1041|consen 200 VGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT-----RAFHKDRPL 274 (876)
T ss_pred cchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc-----cccccccch
Confidence 999999873222333799999999999999999999999999999999999999999999997653 112222223
Q ss_pred HHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCCCcc
Q psy11399 312 KFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKH 391 (865)
Q Consensus 312 ~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~ 391 (865)
.++++|+||+|+++| ++..|.|+|.+++..++.+.+|+++.++ ++++||+|||+++||++|+||++|||++|+..+.
T Consensus 275 ~~~~~lkgL~v~~~h-~~~~r~~~i~~l~~~~a~~~~F~l~~~~--~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~ 351 (876)
T KOG1041|consen 275 DIKKALKGLKVYVTH-GKRKRKIKIMGLSKKPAKNTTFELKDKK--GREITVADYFLEKYNITLKYPDLPCVVVKRPKRE 351 (876)
T ss_pred hHHHHhhCcEEEEec-ccCcceEEEecccCCcccCceeeccCCC--ceEEeHHHHHHHhcCccccCCCCccEeecCCCCC
Confidence 389999999999999 5557999999999999999999765433 4589999999999999999999999999999899
Q ss_pred cccccceeeecCCccccc-cCChHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCchhhcccCeEEcCcceEeeeEEeCC
Q psy11399 392 TYLPLEVCNIVAGQRCIK-KLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPP 470 (865)
Q Consensus 392 ~ylP~Elc~i~~gQ~~~~-kls~~q~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~fGi~I~~~~~~V~arvL~~ 470 (865)
.|+|||+|.|++|||+.+ +|++.|+++|++.++..|++|++.|.++++..++..+++|++|||.|.++|+.|+||+|++
T Consensus 352 ~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~ 431 (876)
T KOG1041|consen 352 NFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPP 431 (876)
T ss_pred cccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCC
Confidence 999999999999999987 9999999999999999999999999999999888779999999999999999999999999
Q ss_pred CceecCCccccccccccccccccccccccccCCCCccccccCceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHH
Q psy11399 471 PKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKI 550 (865)
Q Consensus 471 P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~ 550 (865)
|.|.|+++.. ...|..|.|++++++|+.|+.+..|+|++|......+. +.|+++|.+.
T Consensus 432 P~L~~~~~~~-------------------~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~---~~f~~~L~~~ 489 (876)
T KOG1041|consen 432 PKLKFGGNEM-------------------PKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ---KQFVDELIKI 489 (876)
T ss_pred ceeeccCCCC-------------------ccCCCcCccccccCcccccceEEEEEEEEecccccccH---HHHHHHHHHH
Confidence 9999997621 25678899999999999999999999999986654333 8999999999
Q ss_pred hhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhc---CCceEEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccccc
Q psy11399 551 SNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTF---QALQLVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKNVN 626 (865)
Q Consensus 551 ~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~---~~~~lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~ 626 (865)
|++.||+|.. |. .+.....+++.++..++... ++++++++|++++.. +|+.+|++++..+||+|||++.+++.
T Consensus 490 c~~~Gm~i~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~ 566 (876)
T KOG1041|consen 490 CKDKGMEIKR-PR--KWAPTEESLEDMITEKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAK 566 (876)
T ss_pred HHHcCccccc-cc--ccCcccchhHHHHHHHHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhc
Confidence 9999999966 65 55544567888887776543 568999999999866 89999999999999999999999999
Q ss_pred cCChhhHhHHHHHHHHhcCCcceeccCCCCC--CccCCCeEEEeeeecCCCCCCCC--CCeEEEEeeccCCCCCeeeEEE
Q psy11399 627 KTSPQTLSNLCLKINVKLGGINSILVPSIRP--KVFNEPVIFMGADVTHPPAGDNK--KPSIAAVVGSMDAHPSRYAATV 702 (865)
Q Consensus 627 k~~~q~~~Ni~lKiN~KLGG~n~~l~~~~~~--~l~~~~tMiiG~DV~Hp~~~~~~--~pSi~avVaS~d~~~~~y~~~~ 702 (865)
|..+||++||++|||+||||+|+.+...... +.+..||||||+||+||+++... .|||||||+|+|++.++|.|.+
T Consensus 567 k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~~~~~y~g~~ 646 (876)
T KOG1041|consen 567 KMSPQTLANLILKINVKLGGLNYVLVSPRSSRGPKLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDWHPQKFAGFV 646 (876)
T ss_pred ccchHHHHHHHHHHhhccCceeeEEecccccCcccCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccccchhhcceE
Confidence 8889999999999999999999987543211 14678999999999999998754 5999999999999999999999
Q ss_pred EEccChhHHHHHHHHHH---------------------------------------------------------------
Q psy11399 703 RVQQHRQEIIQELSSMV--------------------------------------------------------------- 719 (865)
Q Consensus 703 ~~Q~~~~Eii~~l~~mv--------------------------------------------------------------- 719 (865)
++|.+++|+|+++.+|+
T Consensus 647 ~~Q~~r~e~i~~~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qK 726 (876)
T KOG1041|consen 647 RFQKSRQEVIQDLGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQK 726 (876)
T ss_pred EEecCChhhhcchHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEc
Confidence 99999999998876665
Q ss_pred ----Hhhccccc-ccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhc
Q psy11399 720 ----RLFCADKK-EQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCH 794 (865)
Q Consensus 720 ----Rff~~~~~-~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~ 794 (865)
|||+.+.. +..++.+|+|||||||+.||||.++|||||||.++||||||+||||||||+++++|+||+|||.|||
T Consensus 727 rHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~ 806 (876)
T KOG1041|consen 727 RHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCF 806 (876)
T ss_pred ccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 99998876 4567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHhhhhccccCCCCCccccCCC-CCCChhhhhhhccccccCcCCeeeC
Q psy11399 795 TYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSS-EDRTPGAMARAITVHADTKKVMYFA 865 (865)
Q Consensus 795 ~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~m~~~ 865 (865)
+|+||++|||||+|+||||++|+|||.+..+ ++.+.....++.+ .+.+..+.+...++|.++..+|||+
T Consensus 807 ~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 807 THQRCTKPVSLPAPLYYAHEVAKRGRNNYKE--HLREKNSSAIYQSIVDLDALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred heeeecCCCcCCchHHHHHHHHHHhhhhhhh--hccccCCCcccccccccchhhhhhHHHhhhcccceEEeC
Confidence 9999999999999999999999999998433 3222322233333 5666667788899999999999996
No 3
>KOG1042|consensus
Probab=100.00 E-value=1e-109 Score=909.79 Aligned_cols=646 Identities=25% Similarity=0.470 Sum_probs=556.4
Q ss_pred CCCCCCeeEEEeeEEEeec-CceeEEEEEEEEccCCCChhhHHHHHHHHHHHHhhhcCCCceEEeCCceEEecCCCCCCC
Q psy11399 87 LGREGRPIVLRANHFQISM-PRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGN 165 (865)
Q Consensus 87 ~Gt~G~~i~L~tN~f~l~~-p~~~iy~YdV~i~p~~~~~~~~r~i~~~l~~~~~~~f~~~~~vyDG~~~LyS~~~L~~~~ 165 (865)
.|+.|.+++|.||||++.. |+..||||+|+|+|+.+.+++++. |+.++.++.|. .++||| ..||..+++....
T Consensus 88 tGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~----~L~~h~~lig~-~~~FDG-~iLfl~~k~eq~~ 161 (845)
T KOG1042|consen 88 TGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREA----LLYNHTDLIGK-GYAFDG-TILFLKEKFEQKQ 161 (845)
T ss_pred cCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHH----HHHHhHhhhcc-ceeecc-eeehhhHHHhhhh
Confidence 6999999999999999987 899999999999999998888754 44466677774 589999 9999999987532
Q ss_pred CceEEEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHHHHHHHHHhcC-CCCccccccccccCCCCCCc
Q psy11399 166 DRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHL-PSMTYTPVGRSFFSTPDGYY 244 (865)
Q Consensus 166 ~~~~~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~-~~~~~~~~Gr~ff~~~~~~~ 244 (865)
+..+..+ ..+..++++||+++++... +.++||++|+|+|.. ..+++.++||+||++.+...
T Consensus 162 ---tel~~ks--~~ge~i~I~ik~~~~~~~t-------------~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ 223 (845)
T KOG1042|consen 162 ---TELVSKS--RDGELIKITIKLTNELPST-------------DPQCIQVFNLILRRSMKGLNLTQIGRNYYDPRAKIE 223 (845)
T ss_pred ---heeeccc--CCCceEEEEEEEeccccCC-------------ChhHHHHHHHHHHHHHhhccHHHhhhccCCCCcccc
Confidence 2222221 2356899999999998743 346999999999874 46889999999999988777
Q ss_pred ccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeeccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEE
Q psy11399 245 HPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEI 324 (865)
Q Consensus 245 ~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~ 324 (865)
++ ...+++|+||.+|||..+..++|+.|+++++ .+..+++|+|..+... .++..+++++.+-|+.| +
T Consensus 224 ip-~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~----------~~~~qe~~~~~~~gliv-L 290 (845)
T KOG1042|consen 224 IP-EFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN----------TQRFQETVNKNVIGLIV-L 290 (845)
T ss_pred cc-cccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC----------HHHHHHHHHHHhcceEE-E
Confidence 77 8899999999999999999999999999999 6999999999988632 34567889999999966 6
Q ss_pred eecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCC--------Cccccccc
Q psy11399 325 THCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQE--------HKHTYLPL 396 (865)
Q Consensus 325 ~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~--------~~~~ylP~ 396 (865)
|.|+| |+|||++|++...+.++|. .+|| +||+.|||+++|||+|++-+||+|....+ ...+++.|
T Consensus 291 T~YNN--ktyriddvD~~~tP~stF~--k~dg---eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lIP 363 (845)
T KOG1042|consen 291 TRYNN--KTYRIDDVDFSQTPLSTFK--KDDG---EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLIP 363 (845)
T ss_pred EecCC--ceeeeeccccCcCccceee--ecCc---eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeeeh
Confidence 77765 9999999999999999994 3455 89999999999999999999999987432 23579999
Q ss_pred ceeeecCCccccccCChHHHHH--HH----HHhcCChhHHHHHHHHHHHhhcCCC--chhhcccCeEEcCcceEeeeEEe
Q psy11399 397 EVCNIVAGQRCIKKLTDMQTST--MI----KATARSAPDREREIQSLVKRADFNN--DAYVHEFGLTISNSMMEVRGRVL 468 (865)
Q Consensus 397 Elc~i~~gQ~~~~kls~~q~~~--mi----k~~~~~P~~R~~~i~~~~~~l~~~~--~~~l~~fGi~I~~~~~~V~arvL 468 (865)
|||.+ ++|+|+++++ |+ +.+...|++|..++..+..++.-+. -..|+.|||+++.+.++|+||+|
T Consensus 364 ELc~~-------TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil 436 (845)
T KOG1042|consen 364 ELCFL-------TGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRIL 436 (845)
T ss_pred hhhhc-------cCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceec
Confidence 99998 4799999986 34 5567999999999999988775432 36799999999999999999999
Q ss_pred CCCceecCCccccccccccccccccccccccccCCCCccc--cccCceeecccccceEEEEEEcCCCCcchHHHHHHHHH
Q psy11399 469 PPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVW--DMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQ 546 (865)
Q Consensus 469 ~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W--~l~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~ 546 (865)
++-+|.+++... ...++...| ..+.-.++....+.+|+|++ |++. ...++.|++.
T Consensus 437 ~sEkI~~~~~~~-------------------~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~--p~r~--~~~a~~fi~~ 493 (845)
T KOG1042|consen 437 PSEKILFGNQKV-------------------PYEGKQADWSREFRTCGILRGSNLDNWAVIY--PGRN--NSEAQEFINM 493 (845)
T ss_pred CccceecCCccc-------------------CCCcchhhhhhhcccccccccCCCcceEEEe--cCcc--HHHHHHHHHH
Confidence 999999997632 244566889 46777788899999999998 6664 5689999999
Q ss_pred HHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccc
Q psy11399 547 LQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTF-QALQLVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKN 624 (865)
Q Consensus 547 L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~-~~~~lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t 624 (865)
|.+.+..+||++ ..|....+. ++..+.|++.+.+.. .++++|+||+|+..+ .|+.||++++++..||||||..+|
T Consensus 494 l~r~a~~mgm~i-~~P~~v~i~--ddr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrT 570 (845)
T KOG1042|consen 494 LRRVASSMGMQI-REPICVEIK--DDRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRT 570 (845)
T ss_pred HHHhccccceec-CCceEEEeC--CCChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEe
Confidence 999999999999 788776664 456899999987743 679999999998665 999999999999999999999999
Q ss_pred cccCC--hhhHhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEE
Q psy11399 625 VNKTS--PQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATV 702 (865)
Q Consensus 625 ~~k~~--~q~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~ 702 (865)
+.+.. .+++.+|++||||||||..|.++ +.-+.+|+||+||+|.+.. +..|++|+|||+|...++|++.+
T Consensus 571 l~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPLk~lMiVG~Dv~hd~~~--k~rsvga~VAs~n~~~tr~fS~v 642 (845)
T KOG1042|consen 571 LAKRSKLMSIATKIALQMNCKLGGELWKVE------IPLKGLMIVGFDVYHDPTL--KGRSVGAFVASMNNDFTRWFSRV 642 (845)
T ss_pred ecCcchhHHHHHHHHHHHhhhhcCcceEEe------eecccceEEEEEeecCccc--cCceEEEEEEeeccchhhhhhhe
Confidence 97654 46789999999999999999985 2236789999999999764 46899999999999999999999
Q ss_pred EEccChhHHHHHHHHHH---------------------------------------------------------------
Q psy11399 703 RVQQHRQEIIQELSSMV--------------------------------------------------------------- 719 (865)
Q Consensus 703 ~~Q~~~~Eii~~l~~mv--------------------------------------------------------------- 719 (865)
..|...+|+.+.|+-++
T Consensus 643 ~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~i 722 (845)
T KOG1042|consen 643 IEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVI 722 (845)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 99999999999988665
Q ss_pred --------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHH
Q psy11399 720 --------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQ 791 (865)
Q Consensus 720 --------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~ 791 (865)
|||... .....||+||||||++||.|..+||||+||+..|||+.||||.|+||++++++|.+|+|||+
T Consensus 723 VV~KrvntR~f~~~----~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLtfK 798 (845)
T KOG1042|consen 723 VVTKRVNTRFFLQG----SSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLTFK 798 (845)
T ss_pred EEEeeccHHHHhhC----CccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHHHH
Confidence 788753 34679999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCchHHHHHHHHHHHHHh
Q psy11399 792 LCHTYVRCTRSVSIPAPAYYAHLVAFRARY 821 (865)
Q Consensus 792 Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~ 821 (865)
|||+|+||.+.|++||||+|||+||+-...
T Consensus 799 lCHlYyNW~GtiRVPApCqYAHKLAfLv~q 828 (845)
T KOG1042|consen 799 LCHLYYNWPGTIRVPAPCQYAHKLAFLVAQ 828 (845)
T ss_pred HhheeecCCcceeccchhHHHHHHHHHHHh
Confidence 999999999999999999999999985444
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.8e-80 Score=705.18 Aligned_cols=353 Identities=57% Similarity=0.952 Sum_probs=312.2
Q ss_pred hhhcccCeEEcCcceEeeeEEeCCCceecCCccccccccccccccccccccccccCCCCccccccCceeecccccceEEE
Q psy11399 447 AYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAI 526 (865)
Q Consensus 447 ~~l~~fGi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l~~W~v 526 (865)
++|++|||+|+++|++|+||+|++|.|.|+++.. ...+.+|+||+++++|++++.+++|+|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~-------------------~~~~~~g~W~~~~~~f~~~~~~~~W~v 61 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSK-------------------TVPPRNGSWNLRGKKFLEGGPIRSWAV 61 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCcc-------------------ccCCCCCceeecCcccCCCcccceEEE
Confidence 4689999999999999999999999999996432 245678999999999999999999999
Q ss_pred EEEcCCCCcch--HHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCC-hhh
Q psy11399 527 ACFAPQRTVRE--DSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTF-QALQLVVVVLPGKT-PVY 602 (865)
Q Consensus 527 v~~~~~~~~~~--~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~-~~~~lvlvIlp~~~-~~Y 602 (865)
+++.......+ +.++.|++.|.+.|+.+||.+. . ......+.++.+++.+++.. .+++|+|||+|+++ ++|
T Consensus 62 i~~~~~~~~~~~~~~~~~F~~~l~~~~~~~g~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y 136 (426)
T cd04657 62 LNFAGPRRSREERADLRNFVDQLVKTVIGAGINIT--T---AIASVEGRVEELFAKLKQAKGEGPQLVLVILPKKDSDIY 136 (426)
T ss_pred EEecCccccchhHHHHHHHHHHHHHHHHhcCCccc--c---cccccchhHHHHHHHHHhhccCCCCEEEEEEcCCCcchH
Confidence 99864322222 4799999999999999999984 1 11223456788888887654 36899999999887 599
Q ss_pred HHHHHhhhhccCceeEeeecccccc-CChhhHhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCC-CC
Q psy11399 603 AEVKRVGDTVLGMATQCVQAKNVNK-TSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGD-NK 680 (865)
Q Consensus 603 ~~IK~~~d~~~GI~TQcv~~~t~~k-~~~q~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~-~~ 680 (865)
+.||++||.+.||+||||..+|+.| .++|++.||++|||+||||+||.+++...+++...+|||||+||+||++++ ..
T Consensus 137 ~~iK~~~~~~~gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~~~~~~~~~tmiiG~Dv~H~~~~~~~~ 216 (426)
T cd04657 137 GRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDIRPLLTKEPTMVLGADVTHPSPGDPAG 216 (426)
T ss_pred HHHHHHHhhcCCcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccccccccCCCCEEEEEEeeecCCCCCCCC
Confidence 9999999999999999999999976 679999999999999999999999765444566789999999999999875 46
Q ss_pred CCeEEEEeeccCCCCCeeeEEEEEccChhHHHHHHHHHH-----------------------------------------
Q psy11399 681 KPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMV----------------------------------------- 719 (865)
Q Consensus 681 ~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Eii~~l~~mv----------------------------------------- 719 (865)
.|||+|||||+|.++++|.+.+++|.+++|++++|++|+
T Consensus 217 ~pSiaa~Vas~d~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i 296 (426)
T cd04657 217 APSIAAVVASVDWHLAQYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAI 296 (426)
T ss_pred CCcEEEEEEecCCcccccceEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988776
Q ss_pred --------------------------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEE
Q psy11399 720 --------------------------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHV 773 (865)
Q Consensus 720 --------------------------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~V 773 (865)
|||+.+..+...+.+||+||||||++||+|..+||||+||.++|||||||||+|
T Consensus 297 ~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~v 376 (426)
T cd04657 297 RKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHV 376 (426)
T ss_pred HHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEE
Confidence 899876543223489999999999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhh
Q psy11399 774 LWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 823 (865)
Q Consensus 774 l~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l 823 (865)
|+||+++++|+||+|||+|||+|+||+++||||+|+||||++|+|||+|+
T Consensus 377 l~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 377 LWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred EECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999986
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.1e-73 Score=657.22 Aligned_cols=369 Identities=30% Similarity=0.521 Sum_probs=324.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhcCCCc--hhhcccCeEEcCcceEeeeEEeCCCceecCCcccccccccccccccc
Q psy11399 416 TSTMIKATARSAPDREREIQSLVKRADFNND--AYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQG 493 (865)
Q Consensus 416 ~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~--~~l~~fGi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~ 493 (865)
..++++.++.+|++|++.|.++++.+..+.+ ++|++|||+|++++++|+||+|+||.|.|+++..
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~------------- 69 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFV------------- 69 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCcc-------------
Confidence 4578999999999999999999998876554 6899999999999999999999999999997532
Q ss_pred ccccccccCCCCccccc--cCceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCC
Q psy11399 494 LFASKQQALPNSGVWDM--RGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGP 571 (865)
Q Consensus 494 ~~~~~~~~~p~~G~W~l--~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~ 571 (865)
..+..|+|++ ++..|+.+..+++|+|+++.. +.+.++.|++.|.+.++.+||.+ ..|.+..+. .
T Consensus 70 -------~~~~~~~w~~~~~~~~~~~~~~~~~W~vi~~~~----~~~~~~~f~~~l~~~~~~~G~~~-~~P~~~~~~--~ 135 (448)
T cd04658 70 -------YANSNADWKREIRNQPLYDAVNLNNWVLIYPSR----DQREAESFLQTLKQVAGPMGIQI-SPPKIIKVK--D 135 (448)
T ss_pred -------CCCCCCCcchhhcCCcccCCcccCeEEEEEecC----CHHHHHHHHHHHHHHHHHcCCcc-CCCeEEEeC--C
Confidence 2345788865 466789999999999998652 46789999999999999999999 667666553 3
Q ss_pred CCHHHHHHHHHhhc-CCceEEEEEeCCCC-hhhHHHHHhhhhccCceeEeeeccccccC--ChhhHhHHHHHHHHhcCCc
Q psy11399 572 DQVEPMFRYLKSTF-QALQLVVVVLPGKT-PVYAEVKRVGDTVLGMATQCVQAKNVNKT--SPQTLSNLCLKINVKLGGI 647 (865)
Q Consensus 572 ~~~e~~~~~l~~~~-~~~~lvlvIlp~~~-~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~--~~q~~~Ni~lKiN~KLGG~ 647 (865)
++.+++++.+++.. .+++|+|||+|++. .+|+.||++++.+.||+||||..+++.+. ..+++.||++|||+||||+
T Consensus 136 ~~~~~~~~~l~~~~~~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~ 215 (448)
T cd04658 136 DRIETYIRALKDAFRSDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGI 215 (448)
T ss_pred CCHHHHHHHHHHhhcCCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCc
Confidence 35777888776643 47899999999876 49999999999999999999999999764 4579999999999999999
Q ss_pred ceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEEEEccChhHH-HHHHHHHH-------
Q psy11399 648 NSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEI-IQELSSMV------- 719 (865)
Q Consensus 648 n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Ei-i~~l~~mv------- 719 (865)
||.+... .....+|||||+||+||+++ ..||++|+|||+|.+.++|.+.++.|..++|+ +++|++|+
T Consensus 216 ~w~l~~~---~~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y 290 (448)
T cd04658 216 PWTVEIP---PFILKNTMIVGIDVYHDTIT--KKKSVVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAY 290 (448)
T ss_pred ceEeccC---CCCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcCCCCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHH
Confidence 9999653 24468899999999999874 46999999999999999999999999999887 88777665
Q ss_pred ------------------------------------------------------------HhhcccccccCCCCCCCCCc
Q psy11399 720 ------------------------------------------------------------RLFCADKKEQSGKSGNIPAG 739 (865)
Q Consensus 720 ------------------------------------------------------------Rff~~~~~~~~~~~~N~~pG 739 (865)
|||+.+. ++.+||+||
T Consensus 291 ~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~----~~~~N~~~G 366 (448)
T cd04658 291 KKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGG----NNFSNPPPG 366 (448)
T ss_pred HHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCC----CCCCCCCCC
Confidence 8887542 356899999
Q ss_pred ceecccccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHH
Q psy11399 740 TTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRA 819 (865)
Q Consensus 740 TvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Ra 819 (865)
||||++||+|..+||||+||.++||||||+||+|||||+++++|+||+|||+|||+|+||++|||+|+|+||||++|+|+
T Consensus 367 TvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~ 446 (448)
T cd04658 367 TVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLV 446 (448)
T ss_pred cEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q psy11399 820 R 820 (865)
Q Consensus 820 r 820 (865)
.
T Consensus 447 g 447 (448)
T cd04658 447 G 447 (448)
T ss_pred c
Confidence 4
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=4.8e-66 Score=583.41 Aligned_cols=320 Identities=32% Similarity=0.507 Sum_probs=270.0
Q ss_pred cceEeeeEEeCCCceecCCccccccccccccccccccccccccCCCCccccccCceeeccccc-ceEEEEEEcCCCCcch
Q psy11399 459 SMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEI-RVWAIACFAPQRTVRE 537 (865)
Q Consensus 459 ~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l-~~W~vv~~~~~~~~~~ 537 (865)
.+++|+||+|++|.|.|++ .|++++++|..|+.+ ++|+|+++..
T Consensus 1 ~~~~v~grvL~~p~i~~~~-----------------------------~w~~~~~~f~~~~~~~~~W~vi~~~~------ 45 (393)
T cd02826 1 TPLILKGRVLPKPQILFKN-----------------------------KFLRNIGPFEKPAKITNPVAVIAFRN------ 45 (393)
T ss_pred CceEEeeEecCCCceEecC-----------------------------CccccCCeeCCCCEeCCeEEEEEccc------
Confidence 3689999999999999962 199999999999999 9999998752
Q ss_pred HHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCC-hhhHHHHHhhhhccCc
Q psy11399 538 DSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTF-QALQLVVVVLPGKT-PVYAEVKRVGDTVLGM 615 (865)
Q Consensus 538 ~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~-~~~~lvlvIlp~~~-~~Y~~IK~~~d~~~GI 615 (865)
+..++|++.|.+.++++||.+...|.........++.+.+.+.+++.. .+++|+|||+|+++ +.|+.||++++.+ ||
T Consensus 46 ~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI 124 (393)
T cd02826 46 EEVDDLVKRLADACRQLGMKIKEIPIVSWIEDLNNSFKDLKSVFKNAIKAGVQLVIFILKEKKPPLHDEIKRLEAKS-DI 124 (393)
T ss_pred HHHHHHHHHHHHHHHhCCCccCCCCCcceeecccccHHHHHHHHHHHhhcCCCEEEEEEcCCCccHHHHHHHHHhcc-CC
Confidence 245689999999999999999542443322211223455555554432 47999999999886 4999999999988 99
Q ss_pred eeEeeecccccc--CChhhHhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCC-CCCCCeEEEEeeccC
Q psy11399 616 ATQCVQAKNVNK--TSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAG-DNKKPSIAAVVGSMD 692 (865)
Q Consensus 616 ~TQcv~~~t~~k--~~~q~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~-~~~~pSi~avVaS~d 692 (865)
+||||..+|+.+ ..++++.||++|||+||||+||.|+... +...+|||||+||+|++++ ....||++|||||+|
T Consensus 125 ~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~~---~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~ 201 (393)
T cd02826 125 PSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGGINYILDSPV---KLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS 201 (393)
T ss_pred ceEEEehhhhccccccHHHHHHHHHHHhhhhCCeeeEeccCC---CCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC
Confidence 999999999976 5689999999999999999999996532 3457899999999999875 335799999999999
Q ss_pred CCCCeeeEEEEEccChhHHHHHHHHHH-----------------------------------------------------
Q psy11399 693 AHPSRYAATVRVQQHRQEIIQELSSMV----------------------------------------------------- 719 (865)
Q Consensus 693 ~~~~~y~~~~~~Q~~~~Eii~~l~~mv----------------------------------------------------- 719 (865)
.+ +.+.+.++.|..++|++++|.+|+
T Consensus 202 ~~-~~~g~~~~~~~~~~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~~~~~~~ 280 (393)
T cd02826 202 NH-TFLGGFLYVQPSREVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACEIEESYR 280 (393)
T ss_pred Cc-cccceEEEEecCccchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 77 455566788888888877776655
Q ss_pred --------------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHH
Q psy11399 720 --------------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADEL 785 (865)
Q Consensus 720 --------------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~l 785 (865)
|||+.+.. +..+||+||||||++||+|..+||||+||.++|||+||+||+|||||+++++|+|
T Consensus 281 p~it~Ivv~Krh~~Rff~~~~~---~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~l 357 (393)
T cd02826 281 PKLVIIVVQKRHNTRFFPNEKN---GGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNEL 357 (393)
T ss_pred CCEEEEEEeccccceeccCCCC---CCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHH
Confidence 78875432 2348999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHh
Q psy11399 786 QCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARY 821 (865)
Q Consensus 786 q~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~ 821 (865)
|+|||+|||+|+||+++||+|+|+||||++|+|||.
T Consensus 358 q~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 358 EILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred HHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=5e-52 Score=455.40 Aligned_cols=229 Identities=45% Similarity=0.783 Sum_probs=201.3
Q ss_pred EEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccccccC--ChhhHhHHHHHHHHhcCCcc-eeccCCCCCCccCCCeE
Q psy11399 590 LVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKNVNKT--SPQTLSNLCLKINVKLGGIN-SILVPSIRPKVFNEPVI 665 (865)
Q Consensus 590 lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~--~~q~~~Ni~lKiN~KLGG~n-~~l~~~~~~~l~~~~tM 665 (865)
+|+||+|+++. .|..||++++.++||+||||..+++.+. ..+++.||++|||+||||.| |.++......+ .+||
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~~~~~~--~~~m 78 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSPPSIDL--KNTM 78 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCSSGSSE--SEEE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccccccccc--CceE
Confidence 57899998665 9999999999999999999999999887 45899999999999999996 55442210011 7899
Q ss_pred EEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEEEEccChhHHHHHHHHHH--------------------------
Q psy11399 666 FMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMV-------------------------- 719 (865)
Q Consensus 666 iiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Eii~~l~~mv-------------------------- 719 (865)
|||+||+|++.+....||++|+|+|+|.+.++|.+.++.|..++|++++|.+++
T Consensus 79 iIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGv 158 (302)
T PF02171_consen 79 IIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGV 158 (302)
T ss_dssp EEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES-
T ss_pred EEEEEEEecCcccCCcceeeEEEEeccCccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEccc
Confidence 999999999987656799999999999999999999999999999888876655
Q ss_pred ------------------------------------------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEee
Q psy11399 720 ------------------------------------------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLC 757 (865)
Q Consensus 720 ------------------------------------------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~ 757 (865)
|||+.+..+ ...||+||||||+.||+|..+||||+
T Consensus 159 se~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~---~~~N~~~Gtvvd~~i~~~~~~~f~l~ 235 (302)
T PF02171_consen 159 SEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD---GLQNPPPGTVVDTGITSPNYFEFYLV 235 (302)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE---TTTEECTTEEESSEEEECSBEEEEEE
T ss_pred CHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc---ccCCCCCCeeeccceeeecceeeeee
Confidence 888876432 57899999999999999999999999
Q ss_pred ecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhh
Q psy11399 758 SHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 823 (865)
Q Consensus 758 Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l 823 (865)
||.++|||+||+||+|||||++++.|+||++||+|||+|+||++++|+|+|+||||++|+|++.+|
T Consensus 236 s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~ 301 (302)
T PF02171_consen 236 SHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNL 301 (302)
T ss_dssp TSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC
T ss_pred ecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.8e-32 Score=311.84 Aligned_cols=218 Identities=23% Similarity=0.278 Sum_probs=163.8
Q ss_pred CCceEEEEEeCCCC-------hhhHHHHHhhhhccCceeEeeeccccccC--ChhhHhHHHHHHHHhcCCcceeccCCCC
Q psy11399 586 QALQLVVVVLPGKT-------PVYAEVKRVGDTVLGMATQCVQAKNVNKT--SPQTLSNLCLKINVKLGGINSILVPSIR 656 (865)
Q Consensus 586 ~~~~lvlvIlp~~~-------~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~--~~q~~~Ni~lKiN~KLGG~n~~l~~~~~ 656 (865)
.+++++||++|++. +.|+.||+++ .+.||+||||..+|+.+. ..+++.||++|||+|+||+||.|...
T Consensus 109 ~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~-- 185 (404)
T cd04659 109 QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD-- 185 (404)
T ss_pred CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--
Confidence 36899999999763 4899999987 679999999999999764 56799999999999999999999642
Q ss_pred CCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCC---eeeEEEEEccC--------------------------
Q psy11399 657 PKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPS---RYAATVRVQQH-------------------------- 707 (865)
Q Consensus 657 ~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~---~y~~~~~~Q~~-------------------------- 707 (865)
...+|||||+||+|+..+....++++.++ +.|.... .+......+..
T Consensus 186 ---~~~~~~iIGidv~~~~~~~~~~~~~a~vf-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~~~~~~P~ 261 (404)
T cd04659 186 ---SDPADLYIGIGFARSRDGEVRVTGCAQVF-DSDGLGLILRGAPIEEPTEDRSPADLKDLLKRVLEGYRESHRGRDPK 261 (404)
T ss_pred ---CCCCeEEEEEEEEEcCCCCEEEEEEEEEE-cCCCCEEEEecCccCCcccccCHHHHHHHHHHHHHHHHHHcCCCCCe
Confidence 24679999999999986522223433332 2232111 11112222110
Q ss_pred ----------hhHHHHHHHHHH------------------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEeeec
Q psy11399 708 ----------RQEIIQELSSMV------------------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSH 759 (865)
Q Consensus 708 ----------~~Eii~~l~~mv------------------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh 759 (865)
.+|.++.+++.+ |||..+..+ ...||++|||||.+ .+||||++|
T Consensus 262 rIiihrdg~~~~~E~~~i~~a~~~~~~~i~~I~V~k~~~~R~f~~~~~~---~~~np~~GT~v~~~-----~~~~~L~s~ 333 (404)
T cd04659 262 RLVLHKDGRFTDEEIEGLKEALEELGIKVDLVEVIKSGPHRLFRFGTYP---NGFPPRRGTYVKLS-----DDEGLLWTH 333 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCceEEEEEEEecCCcceEEecCCC---CCCCCCCceEEEeC-----CCeEEEEec
Confidence 012222222222 788754322 12799999999954 599999999
Q ss_pred CCC--------CcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCC-CCCCchHHHHHHHHHHHHH
Q psy11399 760 QGI--------QGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTR-SVSIPAPAYYAHLVAFRAR 820 (865)
Q Consensus 760 ~~~--------qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~-sVsiPaP~yyA~~~a~Rar 820 (865)
.+. +||++|+| |++|+...+.|+|+++||.|||+|+|++. ++++|+|+||||++|+...
T Consensus 334 g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 334 GSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred CCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 886 99999999 88898889999999999999999999988 9999999999999998654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.86 E-value=1.6e-21 Score=187.91 Aligned_cols=133 Identities=38% Similarity=0.656 Sum_probs=106.9
Q ss_pred ccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeee
Q psy11399 283 QPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECT 362 (865)
Q Consensus 283 ~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iT 362 (865)
++|+|++.++.+..... ....+.++.+.|+|++|.++|.++. +.|+|.+|++++++..+|+. ++|+ ++|
T Consensus 1 ~~vld~~~~~~~~~~~~------~~~~~~~~~~~lkg~~V~~~~~~~~-r~~~I~~i~~~~~~~~~F~~--~~g~--~it 69 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRN------NIKFQKKLERALKGLKVTTTYNNNK-RTYKIKGISFDPAPESTFPD--NDGK--EIT 69 (135)
T ss_dssp HHHHHHHHHHCTCSSHH------HHHHHHHHHHHHTTEEEEETTTTCC-EEEEEEEEEEEETTTSEEEE--TTSE--EEE
T ss_pred CcHHHHHHHHHhhhccc------chHHHHHHHHHcCCcEEEEecCCCc-eEEEEeEEECCCCcceeeec--CCCc--eEE
Confidence 47899999997543211 1223445999999999999998754 99999999999999998854 2354 899
Q ss_pred HHHHHHHhCCCccCCCCCceEEeCCCCc--ccccccceeeecCCccccccCChHHHHHHHHHhcCC
Q psy11399 363 VAKYFLDKYKMKLRFPHLPCLQVGQEHK--HTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARS 426 (865)
Q Consensus 363 V~eYf~~~Y~i~L~~p~lPlv~~g~~~~--~~ylP~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~ 426 (865)
|+|||+++||++|+||+||||+++...+ .+|+|||||.|++||++.+++.+.+++.|++.++.+
T Consensus 70 v~eYf~~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 70 VAEYFKEKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHHHTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hHHHHHhhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999999999998776 899999999999999999999999999999998753
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.78 E-value=6.2e-19 Score=164.68 Aligned_cols=111 Identities=41% Similarity=0.605 Sum_probs=95.0
Q ss_pred cccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeee
Q psy11399 282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVEC 361 (865)
Q Consensus 282 ~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~i 361 (865)
.++|+|+++++++.+... +.+.+.++.++.++|+|++|.++|.+. ++.|+|.+|++.+|++. |. ..+|+ ++
T Consensus 1 ~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lkg~~V~~~h~~~-~r~y~i~~i~~~~a~~~-f~--~~~~~--~i 71 (115)
T cd02825 1 ADPVIETMCKFPKDREID---TPLLDSPREEFTKELKGLKVEDTHNPL-NRVYRPDGETRLKAPSQ-LK--HSDGK--EI 71 (115)
T ss_pred CccHHHHHHHHhcccccc---cccchHHHHHHHHHcCCCEEEEecCCC-ceEEEEeeEECCCChhh-ee--cCCCC--EE
Confidence 368999999999765432 456778889999999999999999853 58999999999999887 63 23443 79
Q ss_pred eHHHHHHHhCCCccCCCCCceEEeCCC---Ccccccccceeee
Q psy11399 362 TVAKYFLDKYKMKLRFPHLPCLQVGQE---HKHTYLPLEVCNI 401 (865)
Q Consensus 362 TV~eYf~~~Y~i~L~~p~lPlv~~g~~---~~~~ylP~Elc~i 401 (865)
||+|||+++||++|+||+||||++|++ .+.+|+|||||.|
T Consensus 72 sv~dYf~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i 114 (115)
T cd02825 72 TFADYFKERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVI 114 (115)
T ss_pred EHHHHHHHHcCCcccCCCCCEEEecCcccCCCceEEchheEEe
Confidence 999999999999999999999999987 6788999999997
No 11
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.78 E-value=9.8e-19 Score=163.48 Aligned_cols=114 Identities=48% Similarity=0.910 Sum_probs=96.5
Q ss_pred cccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeee
Q psy11399 282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVEC 361 (865)
Q Consensus 282 ~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~i 361 (865)
.++|+|+++++++..... .+++.++.++.++|+|++|.++|.+...|.|+|.+|+..++...+|.. ++|. .++
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~--~~~~-~~i 73 (114)
T cd02846 1 AQPVIEFLKEFLGFDTPL----GLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFEL--KDGE-KEI 73 (114)
T ss_pred CccHHHHHHHHhCccccc----ccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEc--CCCC-cEE
Confidence 368999999999765322 355677888999999999999998644689999999999888888853 3332 379
Q ss_pred eHHHHHHHhCCCccCCCCCceEEeCCCCcccccccceeeec
Q psy11399 362 TVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIV 402 (865)
Q Consensus 362 TV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~ylP~Elc~i~ 402 (865)
||+|||+++||++|+||++|||++|++.+++|+|||+|.|+
T Consensus 74 sV~dYf~~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 74 SVADYFKEKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EHHHHHHHHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999999999998888999999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.67 E-value=1.7e-16 Score=147.80 Aligned_cols=105 Identities=19% Similarity=0.357 Sum_probs=87.0
Q ss_pred ccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeee
Q psy11399 283 QPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECT 362 (865)
Q Consensus 283 ~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iT 362 (865)
.+++|++.+++.... ....+.++.+.|+|+.|.++|. ++.|+|.+|++++++.++|+ ..+|. ++|
T Consensus 2 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~--~~~~~--~~S 66 (117)
T cd02845 2 TTVLDRMHKLYRQET--------DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFK--KSDGT--EIT 66 (117)
T ss_pred eeHHHHHHHHHHhcc--------cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCc--CCCCC--eee
Confidence 478889888874321 1246788999999999999983 49999999999999999995 23432 689
Q ss_pred HHHHHHHhCCCccCCCCCceEEeCCC--------Ccccccccceeeec
Q psy11399 363 VAKYFLDKYKMKLRFPHLPCLQVGQE--------HKHTYLPLEVCNIV 402 (865)
Q Consensus 363 V~eYf~~~Y~i~L~~p~lPlv~~g~~--------~~~~ylP~Elc~i~ 402 (865)
|+|||+++||+.|+||+||||+++.+ .+.+|||||||.+.
T Consensus 67 ~~~Yy~~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~lt 114 (117)
T cd02845 67 FVEYYKKQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLT 114 (117)
T ss_pred HHHHHHHHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhc
Confidence 99999999999999999999999763 34799999999984
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.48 E-value=2.6e-14 Score=112.52 Aligned_cols=52 Identities=62% Similarity=0.988 Sum_probs=41.9
Q ss_pred ccccccccCCCCCCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeecc
Q psy11399 230 TPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKS 282 (865)
Q Consensus 230 ~~~Gr~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~ 282 (865)
+.+||+||..+... .+|++|+|+|+|||+||||+.++|+||||+++++||++
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 35899999987544 67899999999999999999999999999999999974
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.29 E-value=4.4e-12 Score=120.79 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=67.5
Q ss_pred HHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCC-----
Q psy11399 313 FTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQ----- 387 (865)
Q Consensus 313 l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~----- 387 (865)
..+.|+|+.|.++|. +|.|+|.+|+ +.++.++|+. ++|. ..+||+|||+++||++|+||+||||++..
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~--~~~~-~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~ 99 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPG--KEGL-GYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLH 99 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccC--CCCC-ceeeHHHHHHHHhCceeccCCcceEEEecccccc
Confidence 467899999999984 4999999999 9999999953 2331 25899999999999999999999998641
Q ss_pred ---------C------C---cccccccceeeec
Q psy11399 388 ---------E------H---KHTYLPLEVCNIV 402 (865)
Q Consensus 388 ---------~------~---~~~ylP~Elc~i~ 402 (865)
+ . ..++||||||.+.
T Consensus 100 NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~ 132 (135)
T cd02844 100 NLLHNRFEEKGESEEKEKDRYFVELPPELCSVI 132 (135)
T ss_pred eecccccccccccccccccceEEEeChHHhccc
Confidence 0 1 1468999999985
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.40 E-value=5.3e-07 Score=83.08 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=53.3
Q ss_pred hHhCCcEEEEeecCCc-cceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeC
Q psy11399 315 KEIKGLKIEITHCGTM-KRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVG 386 (865)
Q Consensus 315 ~~Lkgl~V~~~~~~~~-~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g 386 (865)
+.+.|..|.+.+.+.. .+.|+|.+|.++..+.++|+- ++ .+|++|||+++|||.|++++||||.++
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~---~~---~~Ty~eYyk~KY~I~I~~~~QPLL~v~ 105 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPG---PE---YETFEEYYKKKYKLDIQNLNQPLLDVD 105 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCC---CC---CccHHHHHHHhcCeEeccCCCCcEeec
Confidence 5688876654443322 279999999999999999941 22 689999999999999999999999996
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=6.3e-06 Score=92.76 Aligned_cols=260 Identities=20% Similarity=0.189 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHhhcCC-Cccc-CCCceeeccC----CCCCHHHHHHHHHhhcCCceEEEEEeCCCCh-hhHHHHHhh
Q psy11399 537 EDSLRSFTQQLQKISNDAG-MPII-GQPCFCKYAT----GPDQVEPMFRYLKSTFQALQLVVVVLPGKTP-VYAEVKRVG 609 (865)
Q Consensus 537 ~~~~~~f~~~L~~~~~~~G-~~i~-~~P~~~~~~~----~~~~~e~~~~~l~~~~~~~~lvlvIlp~~~~-~Y~~IK~~~ 609 (865)
...+..+.+.+....+..+ +... .-+.+ .+.+ ..+.+..++..+ +...++..-+-+++ .|+.+|+
T Consensus 355 ~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l-~~a~~r~~~kddl~~iIkei-----d~ee~~k~e~ykdd~~YailKr-- 426 (685)
T COG1431 355 LTRLKSTIKKVVYGFKNSNGIDWKVEGLTL-HVAGKRPKMKDDLTKIIKEI-----DVEELKKQEMYKDDVKYAILKR-- 426 (685)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhccccee-eecccchhhhccchhhhhhh-----hhhhhccccccccchHHHHHHh--
Confidence 3456778888888777765 4321 11111 1110 112333333333 11122233333444 9999999
Q ss_pred hhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEee
Q psy11399 610 DTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVG 689 (865)
Q Consensus 610 d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVa 689 (865)
.+.-|++|.++-.+..|.-.-++.|++.|+-+|-+|+++.+-... ..-+-|+|+||+.-.-+ ...+-|+..
T Consensus 427 -ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~-----gpvDaivGlDvsr~~~g---n~tV~gct~ 497 (685)
T COG1431 427 -LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGL-----GPVDAIVGLDVSRVSEG---NWTVEGCTS 497 (685)
T ss_pred -hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccC-----CCccceeeeeeeEEeeC---CeEEeeeeE
Confidence 345599999999888766567899999999999999999875321 12358999999987633 234444332
Q ss_pred ccCC--CCCeeeEEEEEccC-h-hHHHHHHHHHH----------------Hhhcccccc--cCCC-C-CCCCC-------
Q psy11399 690 SMDA--HPSRYAATVRVQQH-R-QEIIQELSSMV----------------RLFCADKKE--QSGK-S-GNIPA------- 738 (865)
Q Consensus 690 S~d~--~~~~y~~~~~~Q~~-~-~Eii~~l~~mv----------------Rff~~~~~~--~~~~-~-~N~~p------- 738 (865)
-.|. ..-+|...+..-.. + +-+++.+..|. ++....... ..++ . .|+.-
T Consensus 498 ~f~seg~l~eyy~t~tpa~GErl~~~g~yle~~~~~gfe~~n~iV~lRDG~l~~~E~aavkeyg~elgsn~ev~~i~knN 577 (685)
T COG1431 498 CFVSEGGLEEYYHTVTPALGERLETSGRYLEKMNWRGFESRNLIVTLRDGKLVAGEIAAVKEYGGELGSNPEVNRILKNN 577 (685)
T ss_pred EEeccCceEEeeecccCCccchhhhHHHHHHHHHhhhhhccCeeEEEecCccchHHHHHHHHHhhhcCCChhhheecccC
Confidence 2232 33344443322211 1 11222232222 000000000 0000 0 11100
Q ss_pred -----------cceecccccCCCcCeEEee---ecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCC--
Q psy11399 739 -----------GTTVDIGITHPTEFDFYLC---SHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRS-- 802 (865)
Q Consensus 739 -----------GTvVD~~It~p~~~dFyL~---Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~s-- 802 (865)
|..+..++..+ -+| +.....||-+|..-- .-|-.+.-|-|- |.|.|+-|.+.+...
T Consensus 578 p~vf~~e~~i~g~f~~~~~s~~-----h~~~~~ynpv~~gT~~pi~~r--~~~g~l~~e~i~-lv~dLT~mNys~~~g~~ 649 (685)
T COG1431 578 PWVFAIEGEIWGAFVRLDGSTV-----HLCCSPYNPVRRGTPRPIALR--RRDGKLDGELIG-LVHDLTAMNYSNPSGTW 649 (685)
T ss_pred CeEEEecceeeeEEEecCCccc-----ccccCCCCceecCCCcccccc--cccCccchhhHH-HHHHhhhhccCCCCCce
Confidence 11111111000 001 112335777775433 223234445555 999999998888777
Q ss_pred CCCchHHHHHHHHHHHHHh
Q psy11399 803 VSIPAPAYYAHLVAFRARY 821 (865)
Q Consensus 803 VsiPaP~yyA~~~a~Rar~ 821 (865)
++||||++|||++.+-++.
T Consensus 650 ~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 650 SRLPAPVHYADKASKLARY 668 (685)
T ss_pred ecCCcchhhhHHHHHHHhc
Confidence 9999999999999987776
No 17
>KOG1924|consensus
Probab=94.87 E-value=0.072 Score=62.71 Aligned_cols=21 Identities=43% Similarity=0.885 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy11399 25 GGQTKCAGAPPPGAPGAPPGP 45 (865)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~ 45 (865)
||.|+=||.||+|-+|+||+|
T Consensus 525 ~~iP~PP~~pp~gG~g~pppP 545 (1102)
T KOG1924|consen 525 GGIPPPPPLPPTGGTGPPPPP 545 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 456666666665555554444
No 18
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=91.55 E-value=0.4 Score=46.22 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=48.0
Q ss_pred ccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhhc
Q psy11399 765 TSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVE 825 (865)
Q Consensus 765 TarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~~ 825 (865)
.....=.+|+.-...-..++|..|||.||+.+.-+...+.+|.|+++|.++ +.|+..
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 445666788877667899999999999999999999999999999999884 556654
No 19
>KOG1924|consensus
Probab=90.25 E-value=0.85 Score=54.18 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=8.0
Q ss_pred HHHHHHhCCCccCCC
Q psy11399 364 AKYFLDKYKMKLRFP 378 (865)
Q Consensus 364 ~eYf~~~Y~i~L~~p 378 (865)
+|-.+++|--.|++|
T Consensus 868 ae~~e~kypd~l~F~ 882 (1102)
T KOG1924|consen 868 AEICEEKYPDILKFP 882 (1102)
T ss_pred HHHHHHhChhhhcch
Confidence 445556665555544
No 20
>KOG1925|consensus
Probab=64.11 E-value=8.1 Score=43.93 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11399 32 GAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPPELPMFNC 81 (865)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (865)
|+|+|+-| +|.|+|.|+|-+..=.+++++..|.++-|||+|.--.+
T Consensus 223 ~~~~~~~P----~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~~~~L 268 (817)
T KOG1925|consen 223 LAPEPKEP----LIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPLAAPL 268 (817)
T ss_pred CCCCCCCC----CCCCChhccCCchhhhcCCCCCCCCCCCCCCCCCcccC
Confidence 55555544 45567888998888888888877777766666543333
No 21
>KOG2675|consensus
Probab=59.97 E-value=6.4 Score=44.30 Aligned_cols=31 Identities=42% Similarity=0.840 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC
Q psy11399 30 CAGAPPPGAPGAPPGPVA---PPGAVPAPPGAMG 60 (865)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 60 (865)
-+|+|||++|++||.|.. .|...++.++|+|
T Consensus 232 ~~g~PPPPPP~PPp~~~~~~~~~~~~~~~k~~~~ 265 (480)
T KOG2675|consen 232 APGAPPPPPPAPPPAPFFADSNPPSSDANKGGRG 265 (480)
T ss_pred CCCCCCCCCCCCCCcccccccCCCCcccccccHH
Confidence 355666555544443321 2233444455544
No 22
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=54.31 E-value=1.4e+02 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHH
Q psy11399 779 HFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAF 817 (865)
Q Consensus 779 ~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~ 817 (865)
.++.|+--+++-.+| +.-++|.|+..||++|.
T Consensus 176 ~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 176 RIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 578888888887776 33789999999999975
No 23
>KOG1923|consensus
Probab=45.38 E-value=42 Score=40.68 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy11399 46 VAPPGAVPAPPGAMGLIPPN 65 (865)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~ 65 (865)
++++.+||++.++.++.+++
T Consensus 310 pp~~ppv~~ln~~~s~~~p~ 329 (830)
T KOG1923|consen 310 PPPFPPVGPLNSNLSSGAPQ 329 (830)
T ss_pred CCCCCCCCCCCCCCcCCCCC
Confidence 33455666666665555543
No 24
>KOG2792|consensus
Probab=34.29 E-value=1.8e+02 Score=30.99 Aligned_cols=96 Identities=20% Similarity=0.355 Sum_probs=60.3
Q ss_pred Ccccccc---CceeecccccceEEEEEEcCCCC--cchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHH
Q psy11399 505 SGVWDMR---GKQFYTGVEIRVWAIACFAPQRT--VREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFR 579 (865)
Q Consensus 505 ~G~W~l~---~~~f~~p~~l~~W~vv~~~~~~~--~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~ 579 (865)
.|.|.|. ++.+.+.-=+-+|.++||.=.++ +--++++.+...+-+.-...|+++ .|.+.......|..+.+.+
T Consensus 119 GGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~--~PlFIsvDPeRD~~~~~~e 196 (280)
T KOG2792|consen 119 GGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPP--VPLFISVDPERDSVEVVAE 196 (280)
T ss_pred CCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCc--cceEEEeCcccCCHHHHHH
Confidence 4777653 44444444456899999852221 114577777777777777888877 3888777666778888877
Q ss_pred HHHhhcCCceEEEEEeCCCChhhHHHHHhh
Q psy11399 580 YLKSTFQALQLVVVVLPGKTPVYAEVKRVG 609 (865)
Q Consensus 580 ~l~~~~~~~~lvlvIlp~~~~~Y~~IK~~~ 609 (865)
++++..++ ++-++ -.|.+||+.|
T Consensus 197 Y~~eF~pk---llGLT----GT~eqvk~va 219 (280)
T KOG2792|consen 197 YVSEFHPK---LLGLT----GTTEQVKQVA 219 (280)
T ss_pred HHHhcChh---hhccc----CCHHHHHHHH
Confidence 77764333 12222 2577787764
No 25
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=31.00 E-value=47 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=21.4
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHHHhh
Q psy11399 794 HTYVRCTRSVSIPAPAYYAHLVAFRARYH 822 (865)
Q Consensus 794 ~~y~~~t~sVsiPaP~yyA~~~a~Rar~~ 822 (865)
|.|+---.+-=+|.|+++||+|++|....
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~ 40 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEV 40 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHH
Confidence 44555556667999999999999988663
No 26
>PRK09752 adhesin; Provisional
Probab=30.72 E-value=53 Score=42.10 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.1
Q ss_pred CCCCCCCCCCC
Q psy11399 79 FNCPRRPNLGR 89 (865)
Q Consensus 79 ~~~p~RP~~Gt 89 (865)
+++..||..|+
T Consensus 950 y~PvlRPEvGs 960 (1250)
T PRK09752 950 YQPVLNAKVGG 960 (1250)
T ss_pred cccccccccch
Confidence 33445555443
No 27
>PRK00766 hypothetical protein; Provisional
Probab=30.60 E-value=94 Score=31.85 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHH
Q psy11399 778 NHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR 820 (865)
Q Consensus 778 ~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar 820 (865)
.+++.++-.+++-.+|-- =++|.|+..||++|....
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~~~ 187 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASGVM 187 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHHhh
Confidence 478889999999888752 278999999999986544
No 28
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=27.87 E-value=2.3e+02 Score=26.37 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=37.9
Q ss_pred HHHHhhcCCceEEEEEeCCCCh--hhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHh
Q psy11399 579 RYLKSTFQALQLVVVVLPGKTP--VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVK 643 (865)
Q Consensus 579 ~~l~~~~~~~~lvlvIlp~~~~--~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~K 643 (865)
+.++.....|.|+++.+.+... .|...|.-.+.++||.+..+.... ....+-+-..+.++|.-
T Consensus 21 ~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 21 EKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred HHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 3444333347888777765433 898888888899999999887522 12345667777788754
No 29
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=27.81 E-value=64 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=10.7
Q ss_pred ccCCCCCCchHHHHHHH
Q psy11399 798 RCTRSVSIPAPAYYAHL 814 (865)
Q Consensus 798 ~~t~sVsiPaP~yyA~~ 814 (865)
|+--+++.|+.++||-+
T Consensus 1333 NSKMP~RFPPavFY~PK 1349 (2365)
T COG5178 1333 NSKMPVRFPPAVFYAPK 1349 (2365)
T ss_pred ccCCCCCCCcceeeChh
Confidence 34456677777777654
No 30
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=26.96 E-value=97 Score=41.64 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=5.5
Q ss_pred hhhcccCeEEc
Q psy11399 447 AYVHEFGLTIS 457 (865)
Q Consensus 447 ~~l~~fGi~I~ 457 (865)
.++.+.|++++
T Consensus 1943 SL~gRLGLR~~ 1953 (2039)
T PRK15319 1943 SWTTRLGLRVD 1953 (2039)
T ss_pred cEEEEEEEEEe
Confidence 34445555554
No 31
>PHA02669 hypothetical protein; Provisional
Probab=22.90 E-value=1.4e+02 Score=29.34 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11399 28 TKCAGAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPP 68 (865)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (865)
|-|.|.|+. ++ -|++.|-|.|+...-+-+.+.++...+
T Consensus 137 TlcsGpP~q-a~--~pp~tP~pDev~v~VGs~p~~e~g~ye 174 (210)
T PHA02669 137 TLCSGPPRQ-AN--IPPVTPYPDEVSVGVGSGPSTEHGHYE 174 (210)
T ss_pred ccccCCCCc-cC--CCCCCCCCCccccccCCCCCCcCcccc
Confidence 457775543 22 233456677887776666665554333
No 32
>KOG3851|consensus
Probab=20.56 E-value=58 Score=35.83 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=24.5
Q ss_pred eEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCc
Q psy11399 333 KYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMK 374 (865)
Q Consensus 333 ~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~ 374 (865)
...+..++....+..+|+++.. +-.+.-|+.++|=+.
T Consensus 383 k~iLaeF~yk~~p~Etfp~DQs-----k~r~~~y~mKk~fmP 419 (446)
T KOG3851|consen 383 KVILAEFDYKREPKETFPLDQS-----KPRYSMYLMKKDFMP 419 (446)
T ss_pred eEEEEeeccccCccccCCcccc-----chHHHHHHHHhhHHH
Confidence 3567778776777789987432 236677888876443
No 33
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=20.33 E-value=83 Score=32.05 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHH
Q psy11399 778 NHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFR 818 (865)
Q Consensus 778 ~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~R 818 (865)
.+++.++-.++.-..+ .-=++|.|+..||++|.-
T Consensus 147 ~Gi~~~~A~~li~~~t-------~~g~iPEPLRvAhliA~~ 180 (187)
T PF01949_consen 147 WGIDLEEARELIRRTT-------LHGKIPEPLRVAHLIASA 180 (187)
T ss_dssp ESS-HHHHHHHHHHC--------SSSSS-HHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHh-------ccCCCcccHHHHHHHHHH
Confidence 3788888888776654 233789999999999863
Done!