Query psy11399
Match_columns 865
No_of_seqs 188 out of 1096
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 17:26:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 2E-163 8E-168 1484.3 72.1 772 76-865 22-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 3E-140 1E-144 1277.9 57.9 770 76-865 14-1046(1046)
3 1yvu_A Hypothetical protein AQ 100.0 2.6E-80 8.8E-85 734.9 33.8 562 146-824 48-694 (706)
4 2yhb_A QDE-2, post-transcripti 100.0 1.4E-77 4.8E-82 679.1 19.6 345 510-865 2-437 (437)
5 1u04_A Argonaute, hypothetical 100.0 3.7E-72 1.3E-76 663.8 30.0 608 93-823 3-756 (771)
6 3ho1_A Argonaute; argonaute, p 100.0 5.2E-64 1.8E-68 584.4 42.6 581 93-820 6-668 (685)
7 2yha_A Post-transcriptional ge 100.0 1.6E-62 5.6E-67 549.1 22.3 339 510-865 2-388 (388)
8 2w42_A PIWI, putative uncharac 100.0 4.7E-37 1.6E-41 347.9 18.0 220 587-822 99-404 (427)
9 3luc_A Protein argonaute-2; MI 99.9 2.4E-27 8.4E-32 227.3 13.2 138 511-648 1-138 (138)
10 4g0o_A Protein argonaute 5; MI 99.9 7.7E-27 2.6E-31 224.0 10.4 138 512-651 2-139 (139)
11 1vyn_A Argonaute2; nucleic aci 99.9 9.7E-27 3.3E-31 224.1 9.3 138 280-425 2-142 (143)
12 4g0x_A Protein argonaute 1; MI 99.9 1.1E-25 3.7E-30 218.3 11.9 138 512-651 2-147 (147)
13 4g0m_A Protein argonaute 2; MI 99.9 3.9E-25 1.3E-29 215.1 8.6 138 512-651 2-150 (150)
14 3mj0_A Protein argonaute-2; ar 99.9 7E-24 2.4E-28 198.2 9.1 120 281-408 1-123 (124)
15 2xfm_A MIWI, PIWI-like protein 99.9 7.4E-23 2.5E-27 198.5 10.4 135 281-437 1-150 (150)
16 3qir_A PIWI-like protein 2; st 99.8 6.5E-21 2.2E-25 183.1 9.5 132 281-435 1-148 (148)
17 1r6z_P Chimera of maltose-bind 99.8 1.7E-19 5.8E-24 210.7 9.3 131 274-412 376-509 (509)
18 3o7v_X PIWI-like protein 1; PI 99.8 7.3E-19 2.5E-23 163.6 9.8 114 283-418 2-124 (124)
19 2qvw_A GLP_546_48378_50642; di 98.3 3.5E-07 1.2E-11 109.6 4.7 83 313-402 152-252 (756)
20 3ga2_A Endonuclease V; alpha-b 47.1 36 0.0012 34.7 7.0 50 766-824 185-234 (246)
21 2rms_B MSIN3A-binding protein; 39.1 32 0.0011 26.1 3.7 27 32-58 22-53 (61)
22 1wa7_B TIP, hypothetical 28.7 21.0 52 0.0018 20.8 1.8 9 31-39 3-11 (26)
23 2qh9_A UPF0215 protein AF_1433 20.6 1E+02 0.0035 29.9 5.0 35 779-820 142-176 (184)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=2.3e-163 Score=1484.29 Aligned_cols=772 Identities=75% Similarity=1.234 Sum_probs=678.6
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEeeEEEeecCceeEEEEEEEEccCCCChhhHHHHHHHHHHHHh-hhcCCCceEEeCCce
Q psy11399 76 LPMFNCPRRPNLGREGRPIVLRANHFQISMPRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYS-KIFGALKPVFDGRNN 154 (865)
Q Consensus 76 ~~~~~~p~RP~~Gt~G~~i~L~tN~f~l~~p~~~iy~YdV~i~p~~~~~~~~r~i~~~l~~~~~-~~f~~~~~vyDG~~~ 154 (865)
...+.+|+|||+||.|++|.|+||||+|++++..+|||||+|+|+..+++++|+++++++++++ +.|++..+||||+++
T Consensus 22 ~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~ 101 (861)
T 4f3t_A 22 GYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKN 101 (861)
T ss_dssp ---CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSE
T ss_pred cccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcce
Confidence 4578899999999999999999999999998888999999999999889999999999988873 668876679999999
Q ss_pred EEecCCCCCCCCceEEEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHHHHHHHHHhcCCCCccccccc
Q psy11399 155 LYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGR 234 (865)
Q Consensus 155 LyS~~~L~~~~~~~~~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~Gr 234 (865)
|||+.+|++++++.++.+.++++++++.|+|+|++++++++++|.+|+.|+..+.+.++||+||||||+.+++++..+||
T Consensus 102 l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~vGR 181 (861)
T 4f3t_A 102 LYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGR 181 (861)
T ss_dssp EEESSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHSEEETT
T ss_pred EEECCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccccccCC
Confidence 99999999866667777777766677899999999999999999999999988888999999999999988888999999
Q ss_pred cccCCCCCCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeeccccHHHHHHHHhccccccccCCCCChHHHHHHH
Q psy11399 235 SFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFT 314 (865)
Q Consensus 235 ~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~ 314 (865)
+||+++.+..+++++|+|+|+||++|||+++++++||+|+++++|++++||+|+|+++++.++.....+++.++++.++.
T Consensus 182 ~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (861)
T 4f3t_A 182 SFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFT 261 (861)
T ss_dssp EEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHH
T ss_pred CccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHH
Confidence 99998766667889999999999999999999999999999999999999999999998766544444567788999999
Q ss_pred hHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCCCccccc
Q psy11399 315 KEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYL 394 (865)
Q Consensus 315 ~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~yl 394 (865)
++|+|++|+++|+++.+|+|+|.+|++.+++..+|.++.++|++.+|||+|||+++||++|+||+||||++|++.+++||
T Consensus 262 k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~yl 341 (861)
T 4f3t_A 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYL 341 (861)
T ss_dssp HHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEEE
T ss_pred HHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCCCCCccc
Confidence 99999999999987656999999999999999999766667876789999999999999999999999999988889999
Q ss_pred ccceeeecCCccccccCChHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCchhhcccCeEEcCcceEeeeEEeCCCcee
Q psy11399 395 PLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQ 474 (865)
Q Consensus 395 P~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~fGi~I~~~~~~V~arvL~~P~i~ 474 (865)
|||||.|+|||+++++|+++|+++|||+++..|++|.+.|.++++.++++.+++|++|||+|+++|++|+||+|++|+|.
T Consensus 342 P~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~ 421 (861)
T 4f3t_A 342 PLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSIL 421 (861)
T ss_dssp EGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEE
T ss_pred cceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEE
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred cCCccccccccccccccccccccccccCCCCccccccCceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcC
Q psy11399 475 YGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDA 554 (865)
Q Consensus 475 yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~ 554 (865)
|++++. ....|.+|+||+++++|++++++++|+|+++++.+.+.++.++.|++.|.+.|+.+
T Consensus 422 y~~~~~------------------~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~ 483 (861)
T 4f3t_A 422 YGGRNK------------------AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDA 483 (861)
T ss_dssp CCSSSC------------------CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcc------------------cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhC
Confidence 997532 12457789999999999999999999999987665556788999999999999999
Q ss_pred CCcccCCCceeeccCCCCCHHHHHHHHHhhcCCceEEEEEeCCCChhhHHHHHhhhhccCceeEeeeccccccCChhhHh
Q psy11399 555 GMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLS 634 (865)
Q Consensus 555 G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~~~~~lvlvIlp~~~~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~ 634 (865)
||++...|.++.+..+.+.++.+++.+++..++++|||||+|++.+.|+.||++||++.||+||||+.+++.|.++|++.
T Consensus 484 G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 484 GMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp TCCBCSCCSEEEECCSSSSHHHHHHHHHHHSTTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred CcccCCCCeEEEecCchHHHHHHHHHHHhhcCCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 99996668777665556789999999987667899999999987679999999999999999999999999888899999
Q ss_pred HHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEEEEccChhHHHHH
Q psy11399 635 NLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQE 714 (865)
Q Consensus 635 Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Eii~~ 714 (865)
||++|||+||||+||.+.+...+.++..+|||||+||+||++++...|||+|||||+|+++++|.+.+++|.+++|+|++
T Consensus 564 ni~lKiN~KlGG~n~~l~~~~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~E~i~~ 643 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQD 643 (861)
T ss_dssp HHHHHHHHHTTCBCCEECSTTSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTCCSCTT
T ss_pred HHHHHHHHhcCCcceeccccccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCccHHHH
Confidence 99999999999999999876666777899999999999999886678999999999999999999999999999999998
Q ss_pred HHHHH-------------------------------------------------------------------Hhhccccc
Q psy11399 715 LSSMV-------------------------------------------------------------------RLFCADKK 727 (865)
Q Consensus 715 l~~mv-------------------------------------------------------------------Rff~~~~~ 727 (865)
|++|+ |||+.+.+
T Consensus 644 l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~ 723 (861)
T 4f3t_A 644 LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN 723 (861)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGG
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCc
Confidence 87776 99998765
Q ss_pred ccCCCCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCch
Q psy11399 728 EQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPA 807 (865)
Q Consensus 728 ~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPa 807 (865)
+..++.+|++||||||++||||.+|||||+||.++|||||||||+|||||+++++|+||+|||+|||+|+|||++|||||
T Consensus 724 ~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpa 803 (861)
T 4f3t_A 724 ERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPA 803 (861)
T ss_dssp GCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCH
T ss_pred ccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCch
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCccccCCCCCCChhhhhhhccccccCcCCeeeC
Q psy11399 808 PAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA 865 (865)
Q Consensus 808 P~yyA~~~a~Rar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~m~~~ 865 (865)
||||||++|+|||+||.+.++++++||+.||+++.+++++++++.+||++++++|||+
T Consensus 804 P~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 804 PAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp HHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCceeC
Confidence 9999999999999999998888888887777666666777788889999999999996
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.1e-140 Score=1277.89 Aligned_cols=770 Identities=24% Similarity=0.358 Sum_probs=590.3
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEeeEEEeecCce---------------------eEEEEEEEEccCCCC-----------
Q psy11399 76 LPMFNCPRRPNLGREGRPIVLRANHFQISMPRG---------------------FVHHYEIQIQPDKCP----------- 123 (865)
Q Consensus 76 ~~~~~~p~RP~~Gt~G~~i~L~tN~f~l~~p~~---------------------~iy~YdV~i~p~~~~----------- 123 (865)
...+.+|.||+|||.|++|.|+||||.|.+++. .||+|+|+|.|+..+
T Consensus 14 ~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~ 93 (1046)
T 4f1n_A 14 HAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQ 93 (1046)
T ss_dssp CCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC----------------
T ss_pred cccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCccc
Confidence 577899999999999999999999999999544 899999999986542
Q ss_pred ---hhhHHHHHHHHHHH--HhhhcCCCceEEeCCceEEecCCCC---CCCCceEEEEEcC-------CC-----------
Q psy11399 124 ---RKVNREIIETMVHA--YSKIFGALKPVFDGRNNLYTRDPLP---IGNDRMELEVTLP-------GE----------- 177 (865)
Q Consensus 124 ---~~~~r~i~~~l~~~--~~~~f~~~~~vyDG~~~LyS~~~L~---~~~~~~~~~v~~~-------~~----------- 177 (865)
++.+++|+.+|+++ ....|++ .+||||+++|||..+|+ +..+. +.|... ++
T Consensus 94 ~~~~~k~~~ii~~ll~e~~~~~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (1046)
T 4f1n_A 94 ELSKPKKYELIEALLDEDEILYKYRD-RIAFNGEDTIYSHVPLEEFTLFDGC--WEVSNKQKKKVVPGMGAPSNKASLQK 170 (1046)
T ss_dssp -CCHHHHHHHHHHHHHSCTTTGGGTT-SEEECSSSEEEESSCGGGSTTCTTC--CC------------------------
T ss_pred ccchhHHHHHHHHHHHhcchhhhcCC-ceeecCccceEECCcCCccccCCCc--eEEeccccccccCCcccccccccccc
Confidence 46678899998876 2223665 59999999999999999 44332 334433 22
Q ss_pred -----CCCcEEEEEEEEeeeecHHHHHHHHccCCCCCc-----hhHHHHHHHHHhcCCCCc---ccccc-ccccCCC-CC
Q psy11399 178 -----GKDRVFRVAIKWQAQVSLFALEEALEGRTRQIP-----FDAILALDVVMRHLPSMT---YTPVG-RSFFSTP-DG 242 (865)
Q Consensus 178 -----~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~-----~~~iq~Lniilr~~~~~~---~~~~G-r~ff~~~-~~ 242 (865)
.++++|.|+|+++++|++.+|.+|+.|+....+ .+.+++|++||++.+... ..++| ++||... ..
T Consensus 171 ~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~ 250 (1046)
T 4f1n_A 171 KIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFA 250 (1046)
T ss_dssp -------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTC
T ss_pred cccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCC
Confidence 246789999999999999999999999975432 578999999998855322 24554 5687544 34
Q ss_pred CcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeecc-----------------ccHHHHHHHHhcccccc------
Q psy11399 243 YYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKS-----------------QPVIEFMCEVLDIRDVN------ 299 (865)
Q Consensus 243 ~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~-----------------~~l~d~i~~~~~~~~~~------ 299 (865)
...+|++|+|+|+|||+||||+.|+++||||+++++||++ ++|+|+|.++++..+..
T Consensus 251 ~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~~ 330 (1046)
T 4f1n_A 251 KAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYN 330 (1046)
T ss_dssp CEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSCT
T ss_pred ccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhcccccccccccc
Confidence 5678999999999999999999999999999999999985 79999999998632200
Q ss_pred -ccCCCCChHHH-------HHHHhHhCCcEEEEeecCC------------ccceEEEeccccCCCCCCccccccC-----
Q psy11399 300 -EQRKPLTDSQR-------VKFTKEIKGLKIEITHCGT------------MKRKYRVCNVTRRPAQMQSFPLQLE----- 354 (865)
Q Consensus 300 -~~~~~l~~~~~-------~~l~~~Lkgl~V~~~~~~~------------~~r~~~I~~i~~~~a~~~~F~~~~~----- 354 (865)
...+.+...++ .+++++||||+|+++|.+. ..+.++|.||+..+|.+.+|.++..
T Consensus 331 ~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~ 410 (1046)
T 4f1n_A 331 PKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKN 410 (1046)
T ss_dssp TTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-----------
T ss_pred ccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCccccc
Confidence 01122333344 7899999999999999751 1257999999999999999975421
Q ss_pred ----CC-ceeeeeHHHHHHHhCCCccCCCCCceEEeCCCCcccccccceeeecCCccccccCChHHHHHHHHHhcCChhH
Q psy11399 355 ----NG-QTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPD 429 (865)
Q Consensus 355 ----~g-~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~ylP~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~ 429 (865)
+| +++++||+|||+++||++|+||++|||++|++ .+|||||+|.|+|||+++++|++ +++|||+|+++|++
T Consensus 411 ~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP~e 486 (1046)
T 4f1n_A 411 SAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRPTE 486 (1046)
T ss_dssp ------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCHHH
T ss_pred ccccCCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccCcHH
Confidence 11 23579999999999999999999999999975 37999999999999999999987 47999999999999
Q ss_pred HHHHHHHHHHh-----hcCCCchhhcccCeEEcCcceEeeeEEeCCCceecCCccccccccccccccccccccccccCCC
Q psy11399 430 REREIQSLVKR-----ADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPN 504 (865)
Q Consensus 430 R~~~i~~~~~~-----l~~~~~~~l~~fGi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 504 (865)
|++.|.+.... +..+.+++|++|| +|+.+|++|+||||+||.|.|+++..... + .++. ....++
T Consensus 487 R~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~---~-----~p~~--~~~~p~ 555 (1046)
T 4f1n_A 487 KFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYK---D-----KSYG--TKHEES 555 (1046)
T ss_dssp HHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCC---C-----CCSS--SSGGGG
T ss_pred HHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCccccc---c-----cccc--cccCcc
Confidence 99999987522 3335678999999 99999999999999999999987531000 0 0000 013457
Q ss_pred CccccccCceeecccc-cceEEEEEEcCCCC----cchHHHHHHHHHHHHHhhcCCCcccCC--Ccee--------eccC
Q psy11399 505 SGVWDMRGKQFYTGVE-IRVWAIACFAPQRT----VREDSLRSFTQQLQKISNDAGMPIIGQ--PCFC--------KYAT 569 (865)
Q Consensus 505 ~G~W~l~~~~f~~p~~-l~~W~vv~~~~~~~----~~~~~~~~f~~~L~~~~~~~G~~i~~~--P~~~--------~~~~ 569 (865)
+|+|||++++|++|+. +.+|.++++..... ...+.++.|++.|.+.|+++||.+... |.+. .+..
T Consensus 556 ~G~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~ 635 (1046)
T 4f1n_A 556 KGNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQG 635 (1046)
T ss_dssp TTBCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----
T ss_pred CCcccCCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccc
Confidence 8999999999999874 55666655432211 235688999999999999999999542 4221 1111
Q ss_pred C---------------------------CCCHHHHHHHHHhhcCCceEEEEEeCCC-Ch-hhHHHHHhhhhccCceeEee
Q psy11399 570 G---------------------------PDQVEPMFRYLKSTFQALQLVVVVLPGK-TP-VYAEVKRVGDTVLGMATQCV 620 (865)
Q Consensus 570 ~---------------------------~~~~e~~~~~l~~~~~~~~lvlvIlp~~-~~-~Y~~IK~~~d~~~GI~TQcv 620 (865)
+ .+..+..+..+.++..+++|||||||++ +. .|+.||++||++.||+||||
T Consensus 636 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv 715 (1046)
T 4f1n_A 636 GGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENIPSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCV 715 (1046)
T ss_dssp ------------------------CCCBCCTTHHHHHHHHHTCCTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEE
T ss_pred cccccccccccccccccccccccccccccchHHHHHHHHHHhcCCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEE
Confidence 0 0235666666655556789999999987 44 99999999999999999999
Q ss_pred eccccccCChhhHhHHHHHHHHhcCCcceeccCCCCCCcc----CCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCC
Q psy11399 621 QAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVF----NEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPS 696 (865)
Q Consensus 621 ~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~----~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~ 696 (865)
+.+|+.|.++||++||+||||+||||+||.|.....+.+. ..+|||||+||+|++++. .+||+|||||+|++++
T Consensus 716 ~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d~~~t 793 (1046)
T 4f1n_A 716 VWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYDDKFT 793 (1046)
T ss_dssp EHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTGGGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCSSSCC
T ss_pred ehhhhccccHHHHHHHHHHHHHhcCCeeeeccccccccccccccCCceEEEeeeeecCCCCC--CCeeeEEEEEECCCcC
Confidence 9999999899999999999999999999999754333333 347999999999954432 4699999999999999
Q ss_pred eeeEEEEEccC-hhHHHHHHHHHH--------------------------------------------------------
Q psy11399 697 RYAATVRVQQH-RQEIIQELSSMV-------------------------------------------------------- 719 (865)
Q Consensus 697 ~y~~~~~~Q~~-~~Eii~~l~~mv-------------------------------------------------------- 719 (865)
+|.+.+++|.. ++|+|++|++|+
T Consensus 794 ~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~~ 873 (1046)
T 4f1n_A 794 QFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGG 873 (1046)
T ss_dssp CCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHHTS
T ss_pred eEeeEEEEecCCCccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999998 999998876665
Q ss_pred ------------------Hhhccccccc--CC------CCCCCCCcceecccccCCCcCeEEeeecCCCCcccCCceeEE
Q psy11399 720 ------------------RLFCADKKEQ--SG------KSGNIPAGTTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHV 773 (865)
Q Consensus 720 ------------------Rff~~~~~~~--~~------~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~V 773 (865)
|||+.+.++. .+ +.+|++||||||++||||..|||||+||.++|||||||||+|
T Consensus 874 ~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~V 953 (1046)
T 4f1n_A 874 NKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWC 953 (1046)
T ss_dssp CCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCEEEEE
T ss_pred cCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcccCcEEEE
Confidence 7888643211 11 368999999999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhhccccC-CCCCccccCCCCCCChhhhhhhc
Q psy11399 774 LWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHD-SGEGSHQSGSSEDRTPGAMARAI 852 (865)
Q Consensus 774 l~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 852 (865)
||||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||.+.+++ +++.+..++++.+........+.
T Consensus 954 L~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1046)
T 4f1n_A 954 LYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTVSKNVLLP 1033 (1046)
T ss_dssp EEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------CCCHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccccCCccccccCcccccc
Confidence 99999999999999999999999999999999999999999999999999865543 22222222222222233456678
Q ss_pred cccccCcCCeeeC
Q psy11399 853 TVHADTKKVMYFA 865 (865)
Q Consensus 853 ~~h~~~~~~m~~~ 865 (865)
.||++++++|||+
T Consensus 1034 ~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1034 QVNDNIKSVMYYI 1046 (1046)
T ss_dssp CCCGGGTTSCTTC
T ss_pred hhhhhhccceeeC
Confidence 9999999999995
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=2.6e-80 Score=734.94 Aligned_cols=562 Identities=14% Similarity=0.122 Sum_probs=419.9
Q ss_pred ceEEeCCceEEecCCCCCCCCceEEEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHHHHHHHHHhcCC
Q psy11399 146 KPVFDGRNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLP 225 (865)
Q Consensus 146 ~~vyDG~~~LyS~~~L~~~~~~~~~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~ 225 (865)
...|....-+|++.+... +++-.... .+ . .|+|++++++..- ....+.+++|+++.+|+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~----~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~- 108 (706)
T 1yvu_A 48 LPTFRREDEFWCAGKVEK--DTLYLTLS-NG----E--IVELKRVGEEEFR---------GFQNERECQELFRDFLTKT- 108 (706)
T ss_dssp SCEEEETTEEEESSCCTT--CCCEEEEC-SS----S--CEEEEECCCEECC---------CCSCHHHHHHHHHHHHHHT-
T ss_pred Cccccccccceecccccc--ceEEEEcC-CC----C--EEEEEEEEEeecc---------CCCCCHHHHHHHHHHHHHc-
Confidence 356777788999988764 33322221 11 1 5669999988720 0123467999999999987
Q ss_pred CCccccccccccCCCCCCccc-CCCcEEEEEeeEEEEEeeC-CeeEEEEEccceeeeccccHHHHHHHHhccccccccCC
Q psy11399 226 SMTYTPVGRSFFSTPDGYYHP-LGGGREVWFGFHQSVRPSQ-WKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRK 303 (865)
Q Consensus 226 ~~~~~~~Gr~ff~~~~~~~~~-l~~gle~~~Gf~~Svr~~~-~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~ 303 (865)
.+++..+||+||++.+...++ -++++|+|+||.+||+..+ ++++|++|++|+ |.+..||+|+|.+ ....
T Consensus 109 ~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~~------- 179 (706)
T 1yvu_A 109 KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDFN------- 179 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCCC-------
T ss_pred CChHhhhCccccCccccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHH-hhhc-------
Confidence 466678999999976544443 2567999999999999998 999999999999 5899999999988 3211
Q ss_pred CCChHHHHHHHhHhCCcEEEEeecCCccceE--EEecc-ccCCCCCCccccccCCCceeeeeHHHHHHHhCCCc------
Q psy11399 304 PLTDSQRVKFTKEIKGLKIEITHCGTMKRKY--RVCNV-TRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMK------ 374 (865)
Q Consensus 304 ~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~--~I~~i-~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~------ 374 (865)
. + .+..++ . +++| +|++| +++..+..+|. +|. ++| ||+++|++.
T Consensus 180 --~-----------~--~~~~~y-~--n~ty~~riddi~~~~~~P~~~f~----~g~--~iS---Yyk~~~~~~q~ll~~ 232 (706)
T 1yvu_A 180 --P-----------K--RIRVKP-I--GIDFVGRVQDVFKAKEKGEEFFR----LCM--ERS---THKSSKKAWEELLKN 232 (706)
T ss_dssp --C-----------T--TCEEEE-T--TCCCCEEEEEEEESTTSCHHHHH----HHH--HTC---SSHHHHHHHHHHHHC
T ss_pred --c-----------h--hHHhhc-c--cceeccccCcccccCCCcceEec----CCC--Ccc---eEecccCcchhhhhc
Confidence 0 0 122233 2 2668 99998 99888888883 343 577 999988765
Q ss_pred --cCCCCCceEEeCCCCc-ccccccceeeecCCccccccCChHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCchhhcc
Q psy11399 375 --LRFPHLPCLQVGQEHK-HTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHE 451 (865)
Q Consensus 375 --L~~p~lPlv~~g~~~~-~~ylP~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~ 451 (865)
.+.+.+|+++.+.+.. ..+++| +|.+ ++|+++|+++|++.++.+|++|++.|.++++.+ ++.|++
T Consensus 233 r~~~~~~~~~~v~~~~~~p~~lL~p-lc~~-------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~ 300 (706)
T 1yvu_A 233 RELREKAFLVVLEKGYTYPATILKP-VLTY-------ENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRD 300 (706)
T ss_dssp HHHHHHCEEEEETTSCEEEGGGEEE-CCCC-------C------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHT
T ss_pred cccccCCceEEeccCCCCCceeecc-cccc-------CCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHHH
Confidence 3444454544432211 233333 5554 689999999999999999999999999998864 578999
Q ss_pred cCeEEcCcceEeeeEEeCCCceecCCccccccccccccccccccccccccCCCCccccccCceeecccccce---EEEEE
Q psy11399 452 FGLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRV---WAIAC 528 (865)
Q Consensus 452 fGi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l~~---W~vv~ 528 (865)
|||+|+++|++|+||+|++|.|.++.+... ....+..|.|++++ +|+.++.++. |++++
T Consensus 301 fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~-----------------~~~~~~~~~~~~~~-~~~~~~~l~~~~lW~~i~ 362 (706)
T 1yvu_A 301 YGWYISPEEERAKGKLNFKDTVLDAKGKNT-----------------KVITNLRKFLELCR-PFVKKDVLSVEIISVSVY 362 (706)
T ss_dssp TTEEECSSCEECCEECCCCCCEECSSCCEE-----------------CCSSCCHHHHHHCC-CCCSCSEEEEEEEEEEC-
T ss_pred cCCEECCceeecccEEcCCceeecCCCCcc-----------------eeccCCcccccccC-ceecccccccceEEEEEe
Confidence 999999999999999999999985432210 01223456677665 4778888999 85554
Q ss_pred EcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhh---cCCceEEEEEeCCC-------
Q psy11399 529 FAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKST---FQALQLVVVVLPGK------- 598 (865)
Q Consensus 529 ~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~---~~~~~lvlvIlp~~------- 598 (865)
+.+ +..++.|++.|.+.|+.+||++ ..|..... ..+.++.+++.+++. ..+++++|||+|++
T Consensus 363 --~~~---~~~~~~f~~~L~~~~~~~G~~i-~~p~~~~~--~~~~~~~~~~~l~~~~~~~~~~qlvlvIlp~~~~~~~~~ 434 (706)
T 1yvu_A 363 --KKL---EWRKEEFLKELINFLKNKGIKL-KIKGKSLI--LAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYK 434 (706)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTCEE-EEEEEEEE--ECSSTTHHHHHHHHHHTTTSSCSEEEEEEC---------
T ss_pred --cch---hHHHHHHHHHHHHHHHHcCcee-cCCccccc--cchhHHHHHHHHHHHhcccCCCcEEEEEECCcccccccc
Confidence 222 2278999999999999999999 44432222 245678888877643 45789999999986
Q ss_pred C-hhhHHHHHhhhhccCceeEeeeccccccC-ChhhHhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCC
Q psy11399 599 T-PVYAEVKRVGDTVLGMATQCVQAKNVNKT-SPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPA 676 (865)
Q Consensus 599 ~-~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~-~~q~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~ 676 (865)
+ +.|+.||++|+ +.||+||||..+|+.+. ..|++.||++|||+||||+||.|... ...+|||||+||+||+.
T Consensus 435 ~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~-----~~~~tmiIGiDVsH~~~ 508 (706)
T 1yvu_A 435 SFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----EGKVDAFVGIDISRITR 508 (706)
T ss_dssp -CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----TTCCSEEEEECEEECCC
T ss_pred CccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeeccC-----CCCceEEEEEEEeccCC
Confidence 3 49999999965 89999999999999774 57999999999999999999999642 34689999999999975
Q ss_pred CCCCCCeEEEEeeccCCC--CCeeeEEEEEccChhHHHHHHHHHH-----------------------------------
Q psy11399 677 GDNKKPSIAAVVGSMDAH--PSRYAATVRVQQHRQEIIQELSSMV----------------------------------- 719 (865)
Q Consensus 677 ~~~~~pSi~avVaS~d~~--~~~y~~~~~~Q~~~~Eii~~l~~mv----------------------------------- 719 (865)
+. ..||++|+|||+|.. .++|.+....| .++|++++|..++
T Consensus 509 ~~-~~pSv~g~vas~d~~g~~~~~~~~~~~q-~~~ei~~~l~~~~l~~~~~~~~~~P~rIIiyRDGVse~~El~~Ik~A~ 586 (706)
T 1yvu_A 509 DG-KTVNAVAFTKIFNSKGELVRYYLTSYPA-FGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYRDEVAAFKKYG 586 (706)
T ss_dssp SS-SCCCEEEEEEEECTTSCEEEEEEEEECS-CTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCCHHHHHHHHHHH
T ss_pred CC-CCceEEEEEEEEcCCCCEEEEEEEeccc-ccchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCcHHHHHHHHHHH
Confidence 43 359999999999964 57777776544 4788888754332
Q ss_pred ------------------HhhcccccccCCCCCCCCCcceecccccCCCcCeEEeeecCC-CCcccCCceeEEEccCCCC
Q psy11399 720 ------------------RLFCADKKEQSGKSGNIPAGTTVDIGITHPTEFDFYLCSHQG-IQGTSRPSHYHVLWDDNHF 780 (865)
Q Consensus 720 ------------------Rff~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~-~qGTarPt~Y~Vl~d~~~~ 780 (865)
|||+. +||+||||||. ..+||||++|.+ +|||+||+||+|+++|.
T Consensus 587 ~~~~pkit~IvV~Krh~tRfF~~---------~np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~-- 650 (706)
T 1yvu_A 587 ELYGYSLELLEIIKRNNPRFFSN---------EKFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL-- 650 (706)
T ss_dssp HHHTCEEEEEEEECSSCCCEECS---------CSCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--
T ss_pred HHcCCcEEEEEEEeccCeeEECC---------CCCCCeEEEEc-----CCCeEEEEecCCccCCCCCCEEEEEEeCCC--
Confidence 45542 37999999994 468899987765 99999999999444444
Q ss_pred CHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhh
Q psy11399 781 DADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV 824 (865)
Q Consensus 781 ~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~ 824 (865)
++|+||++||+|||+|+||+++||+|+|+||||++|+||+.++.
T Consensus 651 ~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~ 694 (706)
T 1yvu_A 651 PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 694 (706)
T ss_dssp CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999773
No 4
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1.4e-77 Score=679.12 Aligned_cols=345 Identities=30% Similarity=0.458 Sum_probs=233.6
Q ss_pred ccCceeec-ccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCc--eeeccCCCCCHHHHHHHHHhh--
Q psy11399 510 MRGKQFYT-GVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPC--FCKYATGPDQVEPMFRYLKST-- 584 (865)
Q Consensus 510 l~~~~f~~-p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~--~~~~~~~~~~~e~~~~~l~~~-- 584 (865)
+++++|++ ++++++|+++++.+.+ +.+.++.|++.|.+.|+.+||.+ ..|. ...... ++.+..+ .+++.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~--~~~~~~~f~~~l~~~~~~~G~~i-~~p~~~~~~~~~--~~~~~~~-~~~~~~~ 75 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSK--ANEGVPQAMTAFAEFLNRTGIPI-NPRFSPGMSMSV--PGSEKEF-FAKVKEL 75 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSS--CCCCHHHHHHHHHHHHHHTTCCB-CSCCCCCEEEEC--CSSHHHH-HHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCC--CHHHHHHHHHHHHHHHHHcCCEe-CCCCCcceecCC--CchHHHH-HHHHhhc
Confidence 56788999 6899999999986543 35578999999999999999999 4442 222221 2225555 33321
Q ss_pred cCCceEEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccccccCChh--hHhHHHHHHHHhcCCcceeccCCCCCCccC
Q psy11399 585 FQALQLVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQ--TLSNLCLKINVKLGGINSILVPSIRPKVFN 661 (865)
Q Consensus 585 ~~~~~lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q--~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~ 661 (865)
..+++|+|||+|+++. .|+.||++||++.||+||||..+|+.|.++| ++.||+||||+||||+||.|++ ..+.+..
T Consensus 76 ~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~-~~~~~~~ 154 (437)
T 2yhb_A 76 MSSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT-PIPLLAK 154 (437)
T ss_dssp HHTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS-CCHHHHT
T ss_pred cCCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc-cccccCC
Confidence 2478999999998876 9999999999999999999999999888888 9999999999999999999975 2333446
Q ss_pred CCeEEEeeeecCCC---CC--CCCCCeEEEEeeccCCCCCeeeEEEEEcc-ChhHHHHHHHHHH----------------
Q psy11399 662 EPVIFMGADVTHPP---AG--DNKKPSIAAVVGSMDAHPSRYAATVRVQQ-HRQEIIQELSSMV---------------- 719 (865)
Q Consensus 662 ~~tMiiG~DV~Hp~---~~--~~~~pSi~avVaS~d~~~~~y~~~~~~Q~-~~~Eii~~l~~mv---------------- 719 (865)
.+|||||+||+||+ ++ ....|||+|||||+|.++++|.+.+++|. +++|+|++|++|+
T Consensus 155 ~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~ 234 (437)
T 2yhb_A 155 GKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRS 234 (437)
T ss_dssp TCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred CCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecCCCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 79999999999998 66 33679999999999999999999999999 9999999987765
Q ss_pred -------------------------------------------------------HhhcccccccCCCCCCCCCcceecc
Q psy11399 720 -------------------------------------------------------RLFCADKKEQSGKSGNIPAGTTVDI 744 (865)
Q Consensus 720 -------------------------------------------------------Rff~~~~~~~~~~~~N~~pGTvVD~ 744 (865)
|||+.+..+..++.+||+||||||+
T Consensus 235 ~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~ 314 (437)
T 2yhb_A 235 LPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHIHFKSKSPKEGTVVDR 314 (437)
T ss_dssp CCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------------------------
T ss_pred CCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCccccccccCCCCCceEecc
Confidence 7888654432237899999999999
Q ss_pred cccCCCcCeEEeeecCCCCcccCCceeEEEccCC------CCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHH
Q psy11399 745 GITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDN------HFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFR 818 (865)
Q Consensus 745 ~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~R 818 (865)
+||||.+|||||+||.++|||||||||+|||||+ ++++|+||+|||+|||+|+|||++||||+|+||||++|+|
T Consensus 315 ~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R 394 (437)
T 2yhb_A 315 GVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDR 394 (437)
T ss_dssp -------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCCCCCccccCCCCCCChhhhhhhccccccCcCCeeeC
Q psy11399 819 ARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA 865 (865)
Q Consensus 819 ar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~m~~~ 865 (865)
||+||.+.+++++++|+.++ .+........++|++|+++|||+
T Consensus 395 ~r~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 395 ARIHQKELFDALDENDSVKT----DDFARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp HHHHCHHHHHHHHHTSCCCH----HHHHHHHHHTSCCGGGTTSCTTC
T ss_pred HHHHhhhhccCCCCCCccCC----CCccccccccccCHhhcCCceeC
Confidence 99999876655444433221 11233455688999999999996
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=3.7e-72 Score=663.83 Aligned_cols=608 Identities=13% Similarity=0.084 Sum_probs=408.6
Q ss_pred eeEEEeeEEEeec---CceeEEEEEEEEccCCCChhhHHHHHHHHHHHHhhhcCCCceEEeCCce--EEecCCCCCCCCc
Q psy11399 93 PIVLRANHFQISM---PRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNN--LYTRDPLPIGNDR 167 (865)
Q Consensus 93 ~i~L~tN~f~l~~---p~~~iy~YdV~i~p~~~~~~~~r~i~~~l~~~~~~~f~~~~~vyDG~~~--LyS~~~L~~~~~~ 167 (865)
+..|.+|||+|.. |+ .+|+|+|+|+|+.+.+ ++. .++.++.+.+| .++||| +. ||++++|+..
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~----~~~~~~~~~~g--~~~fdg-~~~~l~~~~~l~~~--- 70 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEG----YSIYRLAYENV--GIVIDP-ENLIIATTKELEYE--- 70 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHHTT--EEEEET-TTTEEEESSCCCCS---
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHH----HHHHHHHhhcC--cEEecC-cceeeeccceeccC---
Confidence 6789999999986 78 9999999999998765 332 33445556777 489999 66 9999998721
Q ss_pred eEEEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHHHHHHHHHhcC-CCCc-----cccccccccCCCC
Q psy11399 168 MELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAILALDVVMRHL-PSMT-----YTPVGRSFFSTPD 241 (865)
Q Consensus 168 ~~~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~-~~~~-----~~~~Gr~ff~~~~ 241 (865)
+..+.|+++.++++. +|++|+|+|.. .+++ +..+||+||++
T Consensus 71 ------------~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~~-- 117 (771)
T 1u04_A 71 ------------GEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKFRKP-- 117 (771)
T ss_dssp ------------SCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCC--
T ss_pred ------------CCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHHhhhcCCC--
Confidence 234778888887764 67899999773 4455 77899999987
Q ss_pred CCcccCCCcEEEEEeeEEEEEeeCCeeEEEEEccceeeeccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcE
Q psy11399 242 GYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLK 321 (865)
Q Consensus 242 ~~~~~l~~gle~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~ 321 (865)
.. -+.+++|.|+.+|||..+++++|++|++|++ .+..||+|+|.+.. ..++.+.....|.-
T Consensus 118 -~~---~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~--------------~~~~~~~~~~~g~~ 178 (771)
T 1u04_A 118 -KT---FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP--------------KELEEFLMTHKENL 178 (771)
T ss_dssp -EE---ETTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH--------------HHHHHHHHHSTTTC
T ss_pred -cc---ccccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHHHH--------------HHHHHHHHhccCcE
Confidence 22 2478999999999999999999999999999 68999999986553 23445666667764
Q ss_pred EEEe--------ecCCccceEEEeccccCCCCCC--cc-ccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCC--
Q psy11399 322 IEIT--------HCGTMKRKYRVCNVTRRPAQMQ--SF-PLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQE-- 388 (865)
Q Consensus 322 V~~~--------~~~~~~r~~~I~~i~~~~a~~~--~F-~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~-- 388 (865)
|... +.-+ .+.|++++ .++..+.. +| .+..++|-+ ++++.+||.++|++ ++++||+|+...+
T Consensus 179 ~~~~~~~~~~~vy~~n-~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~y~i--~d~~QPllvs~~~~~ 253 (771)
T 1u04_A 179 MLKDIASPLKTVYKPC-FEEYTKKP-KLDHNQEIVKYWYNYHIERYWN-TPEAKLEFYRKFGQ--VDLKQPAILAKFASK 253 (771)
T ss_dssp EEEETTSTTCCEEEEC-BCTTSSCB-CEECCHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHCS--CCTTSCEEEEEESCC
T ss_pred EeeeccccceeEeecc-cceeecCC-ccccCCCChhheeceeecCCCC-CcchhHHHHHhcCc--CcCCCCeEEecchhh
Confidence 4222 2101 25566655 44444433 44 112223101 45777777799995 8999999998532
Q ss_pred -----CcccccccceeeecCCccccccCChHHH----HHHHHHhcCChhHHHHHHHHHHHhh-----cCC--Cchhhccc
Q psy11399 389 -----HKHTYLPLEVCNIVAGQRCIKKLTDMQT----STMIKATARSAPDREREIQSLVKRA-----DFN--NDAYVHEF 452 (865)
Q Consensus 389 -----~~~~ylP~Elc~i~~gQ~~~~kls~~q~----~~mik~~~~~P~~R~~~i~~~~~~l-----~~~--~~~~l~~f 452 (865)
++.+||.||||.+. | +++++. ++|-..+...|.+|.+.+.++++++ .-+ ....|+.|
T Consensus 254 ~~~~~~~~i~LiPELc~~T-G------~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~ 326 (771)
T 1u04_A 254 IKKNKNYKIYLLPQLVVPT-Y------NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIA 326 (771)
T ss_dssp -----CCCEEECTTTEEEE-E------EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECC
T ss_pred ccCCCCceeeechHhhhhc-C------chhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHhhh
Confidence 24689999999994 3 344333 3455667899999999999999988 322 23567777
Q ss_pred CeEEcCcceEeeeEEeCCCceecCCccccccccccccccccccccccccCCCCccc--cccCceeeccc----------c
Q psy11399 453 GLTISNSMMEVRGRVLPPPKLQYGGRMSSITAQVNSMSSQGLFASKQQALPNSGVW--DMRGKQFYTGV----------E 520 (865)
Q Consensus 453 Gi~I~~~~~~V~arvL~~P~i~yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W--~l~~~~f~~p~----------~ 520 (865)
| .++.. +.|.++++.+-.+.+++. ..+..+.| .+++.+++.+. +
T Consensus 327 ~-~l~~~-~~v~~~~~~~~~i~~~~~----------------------~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~ 382 (771)
T 1u04_A 327 Q-ELENK-IRVRDDKGNSVPISQLNV----------------------QKSQLLLWTNYSRKYPVILPYEVPEKFRKIRE 382 (771)
T ss_dssp G-GGGSS-EEEECSSSCEEESCCC------------------------------CGGGGSCCCCCCCCSBCCTHHHHCCC
T ss_pred h-ccCcC-cccccccccccceeecCc----------------------CCCccCCcchhhCCCcceecccchhhhhcccc
Confidence 7 57655 666554444322333320 12345889 35666665544 3
Q ss_pred cceEEEEEEcCCCCcchHHHHHHH---------HHHHHHhhcC-----------CCcccC-----CCceeecc-CCCCCH
Q psy11399 521 IRVWAIACFAPQRTVREDSLRSFT---------QQLQKISNDA-----------GMPIIG-----QPCFCKYA-TGPDQV 574 (865)
Q Consensus 521 l~~W~vv~~~~~~~~~~~~~~~f~---------~~L~~~~~~~-----------G~~i~~-----~P~~~~~~-~~~~~~ 574 (865)
|+.|++++ +. . .+.+.+|+ +.|.+.+..+ |+.++. .+...... ...+.+
T Consensus 383 i~~wil~~--~~-~--~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i 457 (771)
T 1u04_A 383 IPMFIILD--SG-L--LADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGI 457 (771)
T ss_dssp CCEEEEEE--TT-S--CHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHH
T ss_pred cceEEEEe--CC-c--hHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHH
Confidence 44477765 22 1 45677777 4444444222 333321 11111111 011245
Q ss_pred HHHHHHHHhhc--CCceEEEEEeCCC-C-hhhHHHHHhhhhccCceeEeeeccccccC----C-----hhhHhHHHHHHH
Q psy11399 575 EPMFRYLKSTF--QALQLVVVVLPGK-T-PVYAEVKRVGDTVLGMATQCVQAKNVNKT----S-----PQTLSNLCLKIN 641 (865)
Q Consensus 575 e~~~~~l~~~~--~~~~lvlvIlp~~-~-~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~----~-----~q~~~Ni~lKiN 641 (865)
+++++.+.+.. ..++|+||+++.. + +.|+.||++| .+.||+||||..+|+.+. + .+++.||++|||
T Consensus 458 ~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn 536 (771)
T 1u04_A 458 IEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVL 536 (771)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHH
Confidence 66777765542 4579988877533 3 3999999998 789999999999998653 1 678999999999
Q ss_pred HhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEEEEccChhHHHHHHHHHH--
Q psy11399 642 VKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMV-- 719 (865)
Q Consensus 642 ~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Eii~~l~~mv-- 719 (865)
+||||+||.|+.. ..++||||+||+|++++. ..++++|+|+|.|.+..+|.+....|.++++ ++ ++.|+
T Consensus 537 ~KLGG~pW~L~~p------~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg~~~~~~s~~~~~~~~E~-i~-l~~~l~~ 607 (771)
T 1u04_A 537 SKLGVKYYVLDYR------FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQGYIRKIVPIKIGEQRGES-VD-MNEFFKE 607 (771)
T ss_dssp HHTTCBCCEESCC------CSSSEEEEEEEEEECCTT-TCEEEEEEEEETTSCEEEEEEEECCCCSSSS-CC-HHHHHHH
T ss_pred HHhCCcceeecCC------CCCEEEEEEEEEcCCCCC-CceEEEEEEECCCCCEEEEEEEEeecCCccE-Ec-HHHHHHH
Confidence 9999999999631 258999999999986443 4678888898888888888876554555443 22 33333
Q ss_pred ---Hhhccccc----------c------------------------------cCCC-CCCCCCcceecccccCCCcCeEE
Q psy11399 720 ---RLFCADKK----------E------------------------------QSGK-SGNIPAGTTVDIGITHPTEFDFY 755 (865)
Q Consensus 720 ---Rff~~~~~----------~------------------------------~~~~-~~N~~pGTvVD~~It~p~~~dFy 755 (865)
.|+-.+.+ | ...+ ..|.+|||||| . |||
T Consensus 608 ~L~~y~~~n~~~lP~RIIiyRDG~v~~~El~~i~ea~~~~~p~itfIvV~Krh~tRfF~~~~pGTVV~-------~-DFy 679 (771)
T 1u04_A 608 MVDKFKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEMFDIEVVTMDVIKNHPVRAFANMKMYFNLG-------G-AIY 679 (771)
T ss_dssp HHHHHHHTTCCCTTCEEEEECSBCCCHHHHHHHHHHHHHHTCEEEEEEEESCCCCCBSSCSCEEEEET-------T-EEE
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEEEEecCceeeecCCCCeeEEe-------C-CEE
Confidence 01000000 0 0001 12457899993 3 999
Q ss_pred eeecC--CCCcccCCcee--EEEccCCCCC----HHHHHHHHHHhhccccccCC-CCCCchHHHHHHHHHHHHHhhh
Q psy11399 756 LCSHQ--GIQGTSRPSHY--HVLWDDNHFD----ADELQCLTYQLCHTYVRCTR-SVSIPAPAYYAHLVAFRARYHL 823 (865)
Q Consensus 756 L~Sh~--~~qGTarPt~Y--~Vl~d~~~~~----~d~lq~lTy~Lc~~y~~~t~-sVsiPaP~yyA~~~a~Rar~~l 823 (865)
|+||. +.|||++|+|| +|+||+++++ +|+||.+||+|||+|+||++ +||+||||||||++|++++.++
T Consensus 680 L~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~~ 756 (771)
T 1u04_A 680 LIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEW 756 (771)
T ss_dssp EECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTTC
T ss_pred EEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhhh
Confidence 99995 66999999999 9999999999 99999999999999999999 9999999999999999998876
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=5.2e-64 Score=584.38 Aligned_cols=581 Identities=15% Similarity=0.139 Sum_probs=409.0
Q ss_pred eeEEEeeEEEeec---CceeEEEEEEEEccCCCChhhHHHHHHHHHHHHhhhcCCCceEEeCCceEEecCCCCCCCCceE
Q psy11399 93 PIVLRANHFQISM---PRGFVHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDGRNNLYTRDPLPIGNDRME 169 (865)
Q Consensus 93 ~i~L~tN~f~l~~---p~~~iy~YdV~i~p~~~~~~~~r~i~~~l~~~~~~~f~~~~~vyDG~~~LyS~~~L~~~~~~~~ 169 (865)
++.|.-|-|.|+- ++...|.|++.++|.+......+.+ ..+.. ..|. .+-.-++.|.|.++ |..- .+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~--~~~~~~~~~~~~~~-~~~~-~~~ 76 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLL-AQVAR----RAGG--VTVRMGDGLASWSP-PEVL-VLE 76 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHHHH-HHHHH----HTCS--SEEEETTEEEESSC-TTTS-CCE
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHHHH-HHHHH----HhCC--eEEeecCceecccC-chhh-hcc
Confidence 6889999999983 4689999999999877654443322 22222 2343 33444489999887 4211 122
Q ss_pred EEEEcCCCCCCcEEEEEEEEeeeecHHHHHHHHccCCCCCchhHH-----HHHHHHHhcCCCCccccccccccCCCCCCc
Q psy11399 170 LEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPFDAI-----LALDVVMRHLPSMTYTPVGRSFFSTPDGYY 244 (865)
Q Consensus 170 ~~v~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~i-----q~Lniilr~~~~~~~~~~Gr~ff~~~~~~~ 244 (865)
=.| .+.++...|.+.-+-.+.++..+-. .++++ ..|+-.|+.. .+...-|.-.+. .++
T Consensus 77 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~-- 139 (685)
T 3ho1_A 77 GTL--ARMGQTYAYRLYPKGRRPLDPKDPG----------ERSVLSALARRLLQERLRRL--EGVWVEGLAVYR-REH-- 139 (685)
T ss_dssp EEE--ECSSCEEEEEEEEEEECCCCTTSHH----------HHHHHHHHHHHHHHHHHHTC--SSSEEETTEEEE-EEE--
T ss_pred chh--ccccCCcceeeeecccccCCCCChH----------HHHHHHHHHHHHHHHHHHhh--hceEEccEEEEe-ecC--
Confidence 222 2223345566666666667653211 11222 3445555544 222111222222 211
Q ss_pred ccCCCcEEEEEeeEEEEEeeC-CeeEEEEEccceeeeccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEE
Q psy11399 245 HPLGGGREVWFGFHQSVRPSQ-WKMMLNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIE 323 (865)
Q Consensus 245 ~~l~~gle~~~Gf~~Svr~~~-~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~ 323 (865)
.. |.|.|+.+|+...|.+.. ++++|.||..+. |+.+.++.+|+.+... |- ..|.
T Consensus 140 ~~-~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~~----------------------~~-~~v~ 194 (685)
T 3ho1_A 140 AR-GPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGHP----------------------LP-KRVR 194 (685)
T ss_dssp EE-ETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSCC----------------------CC-SEEE
T ss_pred CC-CCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhCCC----------------------cc-HHHh
Confidence 22 789999999999999997 899999999887 5899999999887531 12 2465
Q ss_pred EeecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCC----Cc-----cccc
Q psy11399 324 ITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQE----HK-----HTYL 394 (865)
Q Consensus 324 ~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~----~~-----~~yl 394 (865)
.+| + .++|+|.+|+ +..+.+.| +.+ .+|++|||+++|.+ +.-++|+|+...+ .+ ..||
T Consensus 195 ~~y-~--~~~~~~~~~~-~~~p~~~~---l~~----~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~l 261 (685)
T 3ho1_A 195 NAY-D--RRTWELLRLG-EEDPKELP---LPG----GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGLL 261 (685)
T ss_dssp ESS-S--CCEECCCEEE-CCCTTCC-------------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTSE
T ss_pred hhc-c--cceEEEeecc-cCCchhee---cCC----CccHHHHHhhcccc--cccCCceEEEEeccccCCCcceeeeeee
Confidence 554 3 3799999998 56676676 223 38999999999988 8889998874222 12 3589
Q ss_pred ccceeeecCCccccccCChHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCchhhcccCeEEcCcceEeeeEEeCCCcee
Q psy11399 395 PLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRGRVLPPPKLQ 474 (865)
Q Consensus 395 P~Elc~i~~gQ~~~~kls~~q~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~fGi~I~~~~~~V~arvL~~P~i~ 474 (865)
.|||| + + .|++.+.+ ..+..+|++|++++.++++. ++++|||+ +++|++|+||+||+|+|
T Consensus 262 ~p~l~-m-~------~l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~~~Gl~-~~~~i~v~gRvLppp~I- 321 (685)
T 3ho1_A 262 VPVLT-L-E------DLHEEEGS---LALSLPWEERRRRTREIASW-------IGRRLGLG-TPEAVRAQAYRLSIPKL- 321 (685)
T ss_dssp EEECC-T-T------TTSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHHTTCSC-CCEEEEEEEEECCCCCE-
T ss_pred chHhH-H-H------HHhhhhhh---ccccCCHHHHHHHHHHHHHH-------HHHhcCCC-CCCcceEEEEEcCHHHh-
Confidence 99999 4 3 57776554 56678999999999999765 46889998 99999999999999999
Q ss_pred cCCccccccccccccccccccccccccCCCCccccccCceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcC
Q psy11399 475 YGGRMSSITAQVNSMSSQGLFASKQQALPNSGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDA 554 (865)
Q Consensus 475 yg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~W~l~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~ 554 (865)
++++.. .+.|++.+.+|+.+++. .|+++++++.. +.++.|++.|.+.|+.+
T Consensus 322 ~g~~~~------------------------~~~~d~~~~~~~~~~~~-~~ail~l~~~~----~~~~~f~~~L~~va~~~ 372 (685)
T 3ho1_A 322 MGRRAV------------------------SKPADALRVGFYRAQET-ALALLRLDGAQ----GWPEFLRRALLRAFGAS 372 (685)
T ss_dssp ESSSBC------------------------SSGGGHHHHCCSSCCCE-EEEEEECSSCC----SCCHHHHHHHHHHHHSS
T ss_pred cCCCCc------------------------CCchhhccCcceeccCc-eEEEEeccCch----HHHHHHHHHHHHHHHhC
Confidence 764311 24566666778887775 79999886532 45679999999999999
Q ss_pred CCcccCCCceeeccCCCCCHHHHHHHHHh-hcCCceEEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccccccCChhh
Q psy11399 555 GMPIIGQPCFCKYATGPDQVEPMFRYLKS-TFQALQLVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQT 632 (865)
Q Consensus 555 G~~i~~~P~~~~~~~~~~~~e~~~~~l~~-~~~~~~lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~ 632 (865)
||+|. .|...... .+.. .+.+.+++ ..+++++||||+|++.+ .|+.||++| .+.||+||||. +++.+...++
T Consensus 373 G~~i~-~~~~~~~~--~d~~-~~~~~l~~~~~~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~i 446 (685)
T 3ho1_A 373 GASLR-LHTLHAHP--SQGL-AFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHR 446 (685)
T ss_dssp SSCEE-EEECCCCG--GGTH-HHHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHH
T ss_pred CcEec-cceeecCC--CchH-HHHHHHHHhhhcCCCEEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhH
Confidence 99994 33322222 1222 33333332 12579999999999876 899999986 78999999999 8887777889
Q ss_pred HhHHHHHHHHhcCCcceeccCCCCCCccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCC--CCeeeEEEEEccChhH
Q psy11399 633 LSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAH--PSRYAATVRVQQHRQE 710 (865)
Q Consensus 633 ~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~--~~~y~~~~~~Q~~~~E 710 (865)
+.||++|||+||||+||.|+.. ..++||||+||+|++. .++++++++++.+ ..+| +..+.|...++
T Consensus 447 a~NIaLkINaKLGG~pW~L~~P------~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l 514 (685)
T 3ho1_A 447 WENALLGLLAKAGLQVVALSGA------YPAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERI 514 (685)
T ss_dssp HHHHHHHHHHHHTCCCCEECSC------CSCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCC
T ss_pred HHHHHHHHHHHhCCeeEEecCC------CCCeEEEEEEEEcCCC-----CccceEEEEEECCCCEEEe-EEEEccCCcEe
Confidence 9999999999999999999641 3689999999999872 3566655555444 4443 33455666555
Q ss_pred HHHHHHHHH--------------------------------------------------------HhhcccccccCCCCC
Q psy11399 711 IIQELSSMV--------------------------------------------------------RLFCADKKEQSGKSG 734 (865)
Q Consensus 711 ii~~l~~mv--------------------------------------------------------Rff~~~~~~~~~~~~ 734 (865)
.+++|.+|+ |||+.+ .
T Consensus 515 ~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~~I~eAl~~~~~~~t~IvVqKRh~tRfF~~n--------~ 586 (685)
T 3ho1_A 515 PQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQ--------G 586 (685)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGHHHHHHHHHTTCEEEEEEEESSCCCCEEESS--------S
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEEEecCCceEecCC--------C
Confidence 667777665 555531 3
Q ss_pred CCCCcceecccccCCCcCeEEeeec--CCCCcccCCceeEEEccCCCCCHHHHHHHHHHhhccccccC-CCCCCchHHHH
Q psy11399 735 NIPAGTTVDIGITHPTEFDFYLCSH--QGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCT-RSVSIPAPAYY 811 (865)
Q Consensus 735 N~~pGTvVD~~It~p~~~dFyL~Sh--~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t-~sVsiPaP~yy 811 (865)
++.+||+|+ ..+||||++| .+.|||+||+||+ +|++++++|+||++||+|||+|+||| ++||+|+||||
T Consensus 587 pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~Y 658 (685)
T 3ho1_A 587 RLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHL 658 (685)
T ss_dssp CCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHH
T ss_pred CCCCeEEEe------CCCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChHHHH
Confidence 455666663 3455555554 4689999999998 99999999999999999999999998 99999999999
Q ss_pred HHHHH-HHHH
Q psy11399 812 AHLVA-FRAR 820 (865)
Q Consensus 812 A~~~a-~Rar 820 (865)
||++| .|||
T Consensus 659 AhklAk~~~r 668 (685)
T 3ho1_A 659 ADRLVKEVGR 668 (685)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 99999 5555
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=1.6e-62 Score=549.07 Aligned_cols=339 Identities=27% Similarity=0.420 Sum_probs=245.4
Q ss_pred ccCceeec-ccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCc--eeeccCCCCCHHHHHHHHHhh--
Q psy11399 510 MRGKQFYT-GVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPC--FCKYATGPDQVEPMFRYLKST-- 584 (865)
Q Consensus 510 l~~~~f~~-p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~--~~~~~~~~~~~e~~~~~l~~~-- 584 (865)
+++++|++ ++++++|+++++.+.+ +.+.++.|++.|.+.|+.+||.+ ..|. ..... .++.+..+ .+++.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~--~~~~~~~f~~~l~~~~~~~G~~i-~~p~~~~~~~~--~~~~~~~~-~~~~~~~ 75 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSK--ANEGVPQAMTAFAEFLNRTGIPI-NPRFSPGMSMS--VPGSEKEF-FAKVKEL 75 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSS--CCCCHHHHHHHHHHHHHHTTCCB-CSCCCCCEEEE--CCSSHHHH-HHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCC--CHHHHHHHHHHHHHHHHHcCCEe-CCCCCcceecC--CCchHHHh-HHHHhhc
Confidence 56788999 7899999999986533 35578999999999999999999 4442 22222 12235556 44332
Q ss_pred cCCceEEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccccccCChh--hHhHHHHHHHHhcCCcceeccCCCCCCccC
Q psy11399 585 FQALQLVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQ--TLSNLCLKINVKLGGINSILVPSIRPKVFN 661 (865)
Q Consensus 585 ~~~~~lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q--~~~Ni~lKiN~KLGG~n~~l~~~~~~~l~~ 661 (865)
..+++|+|||+|+++. .|+.||++||++.||+||||..+|+.|.++| ++.||++|||+||||+||.|.+ ..+.+.+
T Consensus 76 ~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~-~~~~~~~ 154 (388)
T 2yha_A 76 MSSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT-PIPLLAK 154 (388)
T ss_dssp HHTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS-CCHHHHT
T ss_pred cCCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc-cccccCC
Confidence 2478999999998876 9999999999999999999999999888888 9999999999999999999975 2333446
Q ss_pred CCeEEEeeeecCCC---CC--CCCCCeEEEEeeccCCCCCeeeEEEEEcc-ChhHHHHHHHHHH----Hhhcc---cccc
Q psy11399 662 EPVIFMGADVTHPP---AG--DNKKPSIAAVVGSMDAHPSRYAATVRVQQ-HRQEIIQELSSMV----RLFCA---DKKE 728 (865)
Q Consensus 662 ~~tMiiG~DV~Hp~---~~--~~~~pSi~avVaS~d~~~~~y~~~~~~Q~-~~~Eii~~l~~mv----Rff~~---~~~~ 728 (865)
.+|||||+||+||+ ++ ....|||+|||||+|.++++|.+.+++|. +++|+|++|++|+ +.|.. ..+.
T Consensus 155 ~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~ 234 (388)
T 2yha_A 155 GKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRS 234 (388)
T ss_dssp SCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGGTTC
T ss_pred CCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcCCCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 79999999999998 76 34679999999999999999999999999 9999999999888 44543 1110
Q ss_pred cCC-----CCCCCCCc---ceecccc---------cCC----CcCeEEeeecCCCCcccCCceeEEEccCC------CCC
Q psy11399 729 QSG-----KSGNIPAG---TTVDIGI---------THP----TEFDFYLCSHQGIQGTSRPSHYHVLWDDN------HFD 781 (865)
Q Consensus 729 ~~~-----~~~N~~pG---TvVD~~I---------t~p----~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~ 781 (865)
... |.| +.-| .|++.++ ..+ -..-|..+... ||||||+|||||+ +++
T Consensus 235 ~P~rIiiyRDG-VseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr-----arPthY~Vl~De~f~~~~~~~~ 308 (388)
T 2yha_A 235 LPENILIFRDG-VSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG-----SGSAHYTVLVDEIFRADYGNKA 308 (388)
T ss_dssp CCSEEEEEEES-CCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC-----------CEEEEEESSHHHHHGGGH
T ss_pred CCceEEEEecC-cChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc-----cCCceEEEEeCCccccccCCCC
Confidence 000 000 1112 2222221 001 12344444443 9999999999998 999
Q ss_pred HHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhhccccCCCCCccccCCCCCCChhhhhhhccccccCcCC
Q psy11399 782 ADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKV 861 (865)
Q Consensus 782 ~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 861 (865)
+|+||+|||+|||+|+|||++||||+|+||||++|+|||+||.+.+++++++|+.++ .+........++|++|+++
T Consensus 309 ~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~ 384 (388)
T 2yha_A 309 ADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKT----DDFARWGNSGAVHPNLRNS 384 (388)
T ss_dssp HHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCH----HHHHHHHHHTCCCGGGTTS
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhccCCCcccccCC----CcccccccccccCHHhcCC
Confidence 999999999999999999999999999999999999999999877666555543321 1223344567899999999
Q ss_pred eeeC
Q psy11399 862 MYFA 865 (865)
Q Consensus 862 m~~~ 865 (865)
|||+
T Consensus 385 mfyl 388 (388)
T 2yha_A 385 MYYI 388 (388)
T ss_dssp CTTC
T ss_pred ceeC
Confidence 9996
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=4.7e-37 Score=347.86 Aligned_cols=220 Identities=16% Similarity=0.143 Sum_probs=161.9
Q ss_pred CceEEEEEe--------CCCChhhHHHHHhhhhccCceeEeeeccccccCChh-hHhHHHHHHHHhcCCcceeccCCCCC
Q psy11399 587 ALQLVVVVL--------PGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQ-TLSNLCLKINVKLGGINSILVPSIRP 657 (865)
Q Consensus 587 ~~~lvlvIl--------p~~~~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q-~~~Ni~lKiN~KLGG~n~~l~~~~~~ 657 (865)
+++++|||+ |++.+.|-.+|+ ++.+.||+||||..+|+.+.+.+ ++.||++|||+||||+||.|+.. +
T Consensus 99 ~~~lvlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~--~ 175 (427)
T 2w42_A 99 QVDNAIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD--P 175 (427)
T ss_dssp HHHHHHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC--T
T ss_pred CCCEEEEEEEccccccCCCCCcchHHHHH-HHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccC--C
Confidence 578899999 665554445786 56889999999999999866654 48899999999999999999642 1
Q ss_pred CccCCCeEEEeeeecCCCCCCCCCCeEEEEeeccCCCCCeeeEEEEEccChhHHHHHHHHHH-----Hhh-------cc-
Q psy11399 658 KVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMV-----RLF-------CA- 724 (865)
Q Consensus 658 ~l~~~~tMiiG~DV~Hp~~~~~~~pSi~avVaS~d~~~~~y~~~~~~Q~~~~Eii~~l~~mv-----Rff-------~~- 724 (865)
. ..++||||+||+|++.+ +++|++...|.+...+...+..|..++|++++|+.|+ .|. |.
T Consensus 176 ~--~~~~miiGidv~h~~~~-----~v~g~a~v~~~~g~~~~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~ 248 (427)
T 2w42_A 176 E--KGSDIIIGTGATRIDNV-----NLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEK 248 (427)
T ss_dssp T--SSCSEEEEEEEEESSSS-----EEEEEEEEECTTSCEEEEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSE
T ss_pred C--CCCeEEEEEEEEEcCCC-----cEEEEEEEEcCCCCEEEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 1 25699999999999853 6777755555555555556666667899999988776 111 10
Q ss_pred ---------------------------------ccc---------ccCC--------CCCCCCCcceecccccCCCcCeE
Q psy11399 725 ---------------------------------DKK---------EQSG--------KSGNIPAGTTVDIGITHPTEFDF 754 (865)
Q Consensus 725 ---------------------------------~~~---------~~~~--------~~~N~~pGTvVD~~It~p~~~dF 754 (865)
+.+ .... ..+||+||||||.+ ++|
T Consensus 249 ~rIii~gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~------~~~ 322 (427)
T 2w42_A 249 LTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS------SKR 322 (427)
T ss_dssp EEEEEESSCCSCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS------SSE
T ss_pred eEEEEEeecccccHHHHHHHHHHHHHhccccccCCCCCEEEEEEEccccceeeecCCCCCCCCCceEEEcC------CCe
Confidence 000 0001 23599999999973 566
Q ss_pred EeeecCCCCc------c---cCCceeEEEcc----CCCC-CHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHH
Q psy11399 755 YLCSHQGIQG------T---SRPSHYHVLWD----DNHF-DADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR 820 (865)
Q Consensus 755 yL~Sh~~~qG------T---arPt~Y~Vl~d----~~~~-~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar 820 (865)
||.+|.+.|+ + ++|+||+|+|| |+++ +.|+||++||+|||+|.|+|+++|+|+||||||++|+++.
T Consensus 323 ~l~~~~g~q~~~~~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~ 402 (427)
T 2w42_A 323 YLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIA 402 (427)
T ss_dssp EEEEEEC---------CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeccccccccccCCCCEEEEEEecCCcCcccCCCHHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHh
Confidence 6666666665 4 34999999995 4555 4899999999999999999999999999999999999998
Q ss_pred hh
Q psy11399 821 YH 822 (865)
Q Consensus 821 ~~ 822 (865)
..
T Consensus 403 ~~ 404 (427)
T 2w42_A 403 NV 404 (427)
T ss_dssp HH
T ss_pred hh
Confidence 73
No 9
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.94 E-value=2.4e-27 Score=227.32 Aligned_cols=138 Identities=79% Similarity=1.264 Sum_probs=120.9
Q ss_pred cCceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhcCCceE
Q psy11399 511 RGKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQL 590 (865)
Q Consensus 511 ~~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~~~~~l 590 (865)
++++|++|+++++|+++++++++..+++.++.|++.|.+.|+.+||.+...|.+.....+.++++.+|+.+++..++++|
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~~~~ql 80 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQL 80 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHCTTCCE
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcCCCCcE
Confidence 35789999999999999987655456889999999999999999999966676666554567899999999876678999
Q ss_pred EEEEeCCCChhhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcc
Q psy11399 591 VVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGIN 648 (865)
Q Consensus 591 vlvIlp~~~~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n 648 (865)
+|||||++.+.|+.||++||+++||+||||+.+|+.|.++||++||+||||+||||+|
T Consensus 81 v~~ilp~~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 81 VVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp EEEEECSSCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred EEEEECCCChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 9999997656999999999999999999999999998899999999999999999997
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.94 E-value=7.7e-27 Score=224.02 Aligned_cols=138 Identities=32% Similarity=0.565 Sum_probs=119.5
Q ss_pred CceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHhhcCCceEE
Q psy11399 512 GKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLV 591 (865)
Q Consensus 512 ~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~~~~~~~lv 591 (865)
+++|++|+++++|+|+++++. .+++.++.|++.|.+.|+.+||.+..+|.+.......+++|.+++.+.+..++++|+
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~--~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~~~~qlv 79 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTR--IDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRAPGLQLL 79 (139)
T ss_dssp CEEEEECCEECSEEEEECCSS--SCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHCTTCSEE
T ss_pred CCeEccCcccCeEEEEEccCC--CCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhcCCCcEE
Confidence 578999999999999998632 346789999999999999999999554544433334578899999887755689999
Q ss_pred EEEeCCCChhhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcceec
Q psy11399 592 VVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSIL 651 (865)
Q Consensus 592 lvIlp~~~~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l 651 (865)
|||+|+++..|+.||++||++.||+||||+.+|+.|.++||++||++|||+||||+||.|
T Consensus 80 ~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 80 IVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 999998765699999999999999999999999998899999999999999999999975
No 11
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.93 E-value=9.7e-27 Score=224.12 Aligned_cols=138 Identities=31% Similarity=0.512 Sum_probs=96.4
Q ss_pred eccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecC---CccceEEEeccccCCCCCCccccccCCC
Q psy11399 280 YKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCG---TMKRKYRVCNVTRRPAQMQSFPLQLENG 356 (865)
Q Consensus 280 ~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~---~~~r~~~I~~i~~~~a~~~~F~~~~~~g 356 (865)
|+++||+|+++++++..++.. . ...++++.++.++|+|++|.++|.+ +.+|+|+|.+|++.++++.+|+. +|
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~-~-~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~---~g 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINN-T-TNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH---DG 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSS-S-SCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEES---SS
T ss_pred CCcccHHHHHHHHhccccccc-c-CcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEc---CC
Confidence 578999999999884322211 1 1236788899999999999999943 24699999999999999999953 44
Q ss_pred ceeeeeHHHHHHHhCCCccCCCCCceEEeCCCCcccccccceeeecCCccccccCChHHHHHHHHHhcC
Q psy11399 357 QTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATAR 425 (865)
Q Consensus 357 ~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~ylP~Elc~i~~gQ~~~~kls~~q~~~mik~~~~ 425 (865)
. ++||+|||+++ |++|+||+||||++|++.+++|||||+|.|++||+++++|+++|+++|||+|++
T Consensus 77 ~--~isv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~ 142 (143)
T 1vyn_A 77 K--KVTIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAAT 142 (143)
T ss_dssp C--EEEHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC----------------------
T ss_pred C--EEEHHHHHHHc-CCCCCCCCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhc
Confidence 3 79999999998 999999999999999888899999999999999999999999999999999985
No 12
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.92 E-value=1.1e-25 Score=218.25 Aligned_cols=138 Identities=32% Similarity=0.576 Sum_probs=114.7
Q ss_pred CceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeeccCCCCCHHHHHHHHHh----h---
Q psy11399 512 GKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKS----T--- 584 (865)
Q Consensus 512 ~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~~~~~~~e~~~~~l~~----~--- 584 (865)
+++|++|+++++|++++++. ..+++.++.|++.|.+.|+.+||.+..+|.+.......++++..++.+.+ .
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~--~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSR--QVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQ 79 (147)
T ss_dssp CCCEEECCEECSEEEEECCT--TCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSST
T ss_pred CCEEecCCccCeEEEEEccC--CCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhccc
Confidence 46799999999999999763 33467899999999999999999996555444333334566666655432 1
Q ss_pred cCCceEEEEEeCCCCh-hhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcceec
Q psy11399 585 FQALQLVVVVLPGKTP-VYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSIL 651 (865)
Q Consensus 585 ~~~~~lvlvIlp~~~~-~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l 651 (865)
.++++|+|||+|+++. .|+.||++||++.||+||||+.+|+.|.++||++||++|||+||||+||.|
T Consensus 80 ~~~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 80 GKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp TCCCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 2578999999999775 899999999999999999999999998889999999999999999999974
No 13
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.91 E-value=3.9e-25 Score=215.06 Aligned_cols=138 Identities=25% Similarity=0.381 Sum_probs=100.5
Q ss_pred CceeecccccceEEEEEEcCCCCcchHHHHHHHHHHHHHhhcCCCcccCCCceeecc-----CCCCCHHHH----HHHHH
Q psy11399 512 GKQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPCFCKYA-----TGPDQVEPM----FRYLK 582 (865)
Q Consensus 512 ~~~f~~p~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~P~~~~~~-----~~~~~~e~~----~~~l~ 582 (865)
+++|++|+++++|++++++..+... +.++.|++.|.+.|+.+||.+ ..|.+..+. ...++++.. ++.++
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~-~~~~~f~~~l~~~~~~~Gm~i-~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFN-KMPNDFVDNLIDRCWRLGMQM-EAPIVYKTSRMETLSNGNAIEELLRSVIDEAS 79 (150)
T ss_dssp -------CEECSEEEEETTTTTSTT-CCCTTHHHHHHHHHHHTTCEE-CCCSEEEECCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchh-HHHHHHHHHHHHHHHHcCCcc-CCCceeeccccccccCchHHHHHHHHHHHHHH
Confidence 4679999999999999987543222 378899999999999999999 577765431 122333433 44444
Q ss_pred hhc--CCceEEEEEeCCCChhhHHHHHhhhhccCceeEeeeccccccCChhhHhHHHHHHHHhcCCcceec
Q psy11399 583 STF--QALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSIL 651 (865)
Q Consensus 583 ~~~--~~~~lvlvIlp~~~~~Y~~IK~~~d~~~GI~TQcv~~~t~~k~~~q~~~Ni~lKiN~KLGG~n~~l 651 (865)
++. ..++|+|||||++++.|+.||++||++.||+||||+.+|+.|.++||++||+||||+||||+||.|
T Consensus 80 ~~~~~~~pqlv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 80 RKHGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp HHTTTCCCCEEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred HhcCCCCCcEEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 443 257999999999877899999999999999999999999999899999999999999999999974
No 14
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.89 E-value=7e-24 Score=198.17 Aligned_cols=120 Identities=33% Similarity=0.578 Sum_probs=98.8
Q ss_pred ccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeec---CCccceEEEeccccCCCCCCccccccCCCc
Q psy11399 281 KSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHC---GTMKRKYRVCNVTRRPAQMQSFPLQLENGQ 357 (865)
Q Consensus 281 ~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~---~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~ 357 (865)
+++||+|+|++++...+++.. +++ +.++.++.++|+|++|+++|. ++.+|.|+|.+|++.+|++.+|+. +|.
T Consensus 1 ~~~~vief~~e~~~~~~~~~~-~~l-~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~---~g~ 75 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNT-TNL-DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH---DGK 75 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTT-CCG-GGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEES---SSS
T ss_pred CCccHHHHHHHHhhhcccccc-cCC-HHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEee---CCc
Confidence 478999999999865544333 246 566889999999999999985 334699999999999999999964 453
Q ss_pred eeeeeHHHHHHHhCCCccCCCCCceEEeCCCCcccccccceeeecCCcccc
Q psy11399 358 TVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCI 408 (865)
Q Consensus 358 ~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~ylP~Elc~i~~gQ~~~ 408 (865)
++||+|||+++ |++|+||+||||++|++.+++|||||+|.|+|||+++
T Consensus 76 --~isV~~Yf~~~-~~~l~~p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~ 123 (124)
T 3mj0_A 76 --KVTIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALN 123 (124)
T ss_dssp --EEEHHHHHHTT-TCCCSCSSSEEEECCBTTBCCEECGGGEEEEC-----
T ss_pred --EEEHHHHHHHc-CCcccCCCCCeEeecCCCCceEecceeEEECCCCccC
Confidence 79999999998 9999999999999998888999999999999999985
No 15
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.88 E-value=7.4e-23 Score=198.51 Aligned_cols=135 Identities=21% Similarity=0.364 Sum_probs=94.1
Q ss_pred ccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceee
Q psy11399 281 KSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVE 360 (865)
Q Consensus 281 ~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~ 360 (865)
+++||+|+|.++++.. ..+..+.++.++|+|+.|.++|. +|+|+|.+|++++++.++|+. .+|. +
T Consensus 1 r~~tvld~~~~~~~~~--------~~~~~~~~~~~~l~g~~V~t~y~---nr~yrI~~i~~~~~p~~~F~~--~~g~--~ 65 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQT--------EEHKFQEQVSKELIGLIVLTKYN---NKTYRVDDIDWDQNPKSTFKK--ADGS--E 65 (150)
T ss_dssp CCCBHHHHHHHHHHHS--------CHHHHHHHHHHHHTTCEEEETTT---TEEEECCEEETTCCTTCCCCS--SSSC--C
T ss_pred CCccHHHHHHHHHccc--------cchHHHHHHHHHhCCcEEEEeeC---CceEEeeecCCCCCccCeeec--CCCc--e
Confidence 4689999999998531 12456888999999999988874 389999999999999999964 3553 6
Q ss_pred eeHHHHHHHhCCCccCCCCCceEEeCCCC---------cccccccceeeecCCccccccCChHHHHH------HHHHhcC
Q psy11399 361 CTVAKYFLDKYKMKLRFPHLPCLQVGQEH---------KHTYLPLEVCNIVAGQRCIKKLTDMQTST------MIKATAR 425 (865)
Q Consensus 361 iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~---------~~~ylP~Elc~i~~gQ~~~~kls~~q~~~------mik~~~~ 425 (865)
+||+|||+++||++|+||+||||++|.+. +++|||||||.|. +|+++|+++ |++.++.
T Consensus 66 ~T~~eYf~~~Y~i~i~~~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~-------~L~d~~rs~~~~mk~l~~~t~~ 138 (150)
T 2xfm_A 66 VSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLT-------GLTDKMRNDFNVMKDLAVHTRL 138 (150)
T ss_dssp CCHHHHHHTTCCCCCCCSSSCEEEECSSCTTCCSSCSSCCEEECGGGEEEC-------STTC------------------
T ss_pred eeHHHHHHHHcCCccCCCCCCeEEecccccccccccccceEEecHHHhccC-------CCCHHHHhhHHHHHHHHHHHcc
Confidence 99999999999999999999999997642 5689999999996 699999885 7788999
Q ss_pred ChhHHHHHHHHH
Q psy11399 426 SAPDREREIQSL 437 (865)
Q Consensus 426 ~P~~R~~~i~~~ 437 (865)
.|++|.+.|.++
T Consensus 139 ~P~~R~~~i~~f 150 (150)
T 2xfm_A 139 TPEQRQREVGRL 150 (150)
T ss_dssp ------------
T ss_pred CHHHHHHHHhcC
Confidence 999999988754
No 16
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.83 E-value=6.5e-21 Score=183.13 Aligned_cols=132 Identities=16% Similarity=0.272 Sum_probs=87.3
Q ss_pred ccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceee
Q psy11399 281 KSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVE 360 (865)
Q Consensus 281 ~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~ 360 (865)
+..||+|+|.++.... .+..+.++.+.|+|+.|.+.| + ++.|+|.+|+++.++..+|+. .||. +
T Consensus 1 r~~tvld~m~~~~~~~---------~~~~~~~~~k~l~g~~V~t~y-n--nk~YrI~~I~~~~~p~s~F~~--~dg~--~ 64 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQN---------KEHFQDECTKLLVGNIVITRY-N--NRTYRIDDVDWNKTPKDSFTM--SDGK--E 64 (148)
T ss_dssp -CCCHHHHHHHHHHHH---------HHHHHHHHHHHHTTCEEEETT-T--CCEEECCEEETTCCTTSEEEC--TTSC--E
T ss_pred CcchHHHHHHHHHhhC---------cHHHHHHHHHHcCCCEEEEcc-C--CcEEEEeeecCCCCcCccccC--CCCC--c
Confidence 3579999998875321 135678899999999987666 3 389999999999998889853 4564 7
Q ss_pred eeHHHHHHHhCCCccCCCCCceEEeCCCC----------cccccccceeeecCCccccccCChHHHH------HHHHHhc
Q psy11399 361 CTVAKYFLDKYKMKLRFPHLPCLQVGQEH----------KHTYLPLEVCNIVAGQRCIKKLTDMQTS------TMIKATA 424 (865)
Q Consensus 361 iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~----------~~~ylP~Elc~i~~gQ~~~~kls~~q~~------~mik~~~ 424 (865)
+||+|||+++|||+|+||+||||+++.+. +.+|||||||.+. +|++++++ +|.+.+.
T Consensus 65 iT~~eYf~~kY~i~I~~~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~lt-------gLtd~~r~d~~~mk~l~~~tr 137 (148)
T 3qir_A 65 ITFLEYYSKNYGITVKEEDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMT-------GIPEKMKKDFRAMKDLAQQIN 137 (148)
T ss_dssp EEHHHHHHHHHCCCCSCTTCCEEEECCTTCCCC---CCSCCEEECGGGEECC----------------------------
T ss_pred ccHHHHHHHHcCCeecCCCCceEEeecccccCCCCCCccceeeecHHHhhhc-------CCCHHHHhhhHHHHHHHHHHC
Confidence 99999999999999999999999998642 4789999999995 69999988 4778889
Q ss_pred CChhHHHHHHH
Q psy11399 425 RSAPDREREIQ 435 (865)
Q Consensus 425 ~~P~~R~~~i~ 435 (865)
..|.+|...|+
T Consensus 138 ~~P~~R~~~l~ 148 (148)
T 3qir_A 138 LSPKQHHSALE 148 (148)
T ss_dssp -----------
T ss_pred CCHHHHHHhhC
Confidence 99999987763
No 17
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.78 E-value=1.7e-19 Score=210.73 Aligned_cols=131 Identities=31% Similarity=0.516 Sum_probs=100.6
Q ss_pred ccceeeeccccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCC---ccceEEEeccccCCCCCCccc
Q psy11399 274 VSATAFYKSQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGT---MKRKYRVCNVTRRPAQMQSFP 350 (865)
Q Consensus 274 vs~~~F~~~~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~---~~r~~~I~~i~~~~a~~~~F~ 350 (865)
...+.||++++|+|++.+++...+.+.. +. .+..+.++.++||||+|+++|.+. .+|.|+|.+|+..++.+.+|+
T Consensus 376 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~ 453 (509)
T 1r6z_P 376 ISHKSFPISMPMIEYLERFSLKAKINNT-TN-LDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE 453 (509)
T ss_dssp SSCCCSSCEEEHHHHHHHHTTCSCCCTT-CC-GGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEE
T ss_pred hhhhccCCCccHHHHHHHHhhccccCCc-cc-cchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEec
Confidence 3456799999999999999843322211 11 244455699999999999999764 468999999999899999995
Q ss_pred cccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCCCcccccccceeeecCCccccccCC
Q psy11399 351 LQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLT 412 (865)
Q Consensus 351 ~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~~~~~ylP~Elc~i~~gQ~~~~kls 412 (865)
. ++ ++|||+|||+ +||++|+||++|||++|++.+++|||||||.|+|||||++|||
T Consensus 454 ~---~~--~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 454 H---DG--KKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp E---TT--EEEEHHHHHH-HTTCCCSCTTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred c---CC--eEEEHHHHHH-HcCCcccCCCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 4 33 3899999999 8999999999999999988889999999999999999999885
No 18
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.77 E-value=7.3e-19 Score=163.57 Aligned_cols=114 Identities=20% Similarity=0.344 Sum_probs=88.8
Q ss_pred ccHHHHHHHHhccccccccCCCCChHHHHHHHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeee
Q psy11399 283 QPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECT 362 (865)
Q Consensus 283 ~~l~d~i~~~~~~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iT 362 (865)
+||+|+|.++.... -....+.++.+.|+|+.|.+.|. ++.|+|.+|+++.++.++|+ .+||. ++|
T Consensus 2 ~tvld~~~~~~~~~--------~~~~~~~~~~k~l~G~~V~t~yn---nk~YrI~~I~~~~~p~s~F~--~~dg~--~~T 66 (124)
T 3o7v_X 2 ETVLDFMFNFYHQT--------EEHKFQEQVSKELIGLVVLTKYN---NKTYRVDDIDWDQNPKSTFK--KADGS--EVS 66 (124)
T ss_dssp CBHHHHHHHSCCCS--------SHHHHHHHHHHHHTTCEEEETTS---SCEEECCEEETTCCTTCEEE--CTTSC--EEE
T ss_pred ccHHHHHHHHHHhc--------ccHHHHHHHHHHcCCCEEEEeeC---CeEEEEeeeCCCCCccCccc--CCCCC--eee
Confidence 68999998875221 01456788999999998877663 38999999999999999985 34564 799
Q ss_pred HHHHHHHhCCCccCCCCCceEEeCCCC---------cccccccceeeecCCccccccCChHHHHH
Q psy11399 363 VAKYFLDKYKMKLRFPHLPCLQVGQEH---------KHTYLPLEVCNIVAGQRCIKKLTDMQTST 418 (865)
Q Consensus 363 V~eYf~~~Y~i~L~~p~lPlv~~g~~~---------~~~ylP~Elc~i~~gQ~~~~kls~~q~~~ 418 (865)
|+|||+++||++|++|+||||+++.+. +.+|||||||.+. +|+|+++++
T Consensus 67 ~~eYyk~kY~i~I~~~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~lt-------Gltd~~r~d 124 (124)
T 3o7v_X 67 FLEYYRKQYNQEITDLKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLT-------GLTDKMRND 124 (124)
T ss_dssp HHHHHHHHHCCCCCCSSCCEEEECCC----------CCEEECGGGEECC-------CCC------
T ss_pred HHHHHHHHhCceecCCCcceEEEeeecccCCCCCCcceEEechhheecc-------CCChHhccC
Confidence 999999999999999999999997542 5789999999994 799988764
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.28 E-value=3.5e-07 Score=109.65 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=66.2
Q ss_pred HHhHhCCcEEEEeecCCccceEEEeccccCCCCCCccccccCCCceeeeeHHHHHHHhCCCccCCCCCceEEeCCC----
Q psy11399 313 FTKEIKGLKIEITHCGTMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQE---- 388 (865)
Q Consensus 313 l~~~Lkgl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~g~~~~iTV~eYf~~~Y~i~L~~p~lPlv~~g~~---- 388 (865)
+.+.|+|.-|.+.| ++ +|+|+|.+|+++..+.++|+- .+ ..+|+.|||+++||++|++++||+|.+...
T Consensus 152 ~~~~l~g~vV~t~y-nn-~r~Y~i~~id~d~~P~S~F~~--~~---~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~ 224 (756)
T 2qvw_A 152 LSASLHGRMVATPE-IS-WSLYVVLGIDSTQTSLSYFTR--AN---ESITYMRYYATAHNIHLRAADLPLVAAVRLDDLK 224 (756)
T ss_dssp CTTTSTTCEEEETT-TT-TEEEEEEEEEEEEETTSEEEE--TT---EEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTT
T ss_pred hHHHhCCCEEecCC-CC-ceEEEEEEecCCCCCCCcCCC--CC---CCCCHHHHHHHHcCcccccCCCCeEEEEeccccc
Confidence 56689998776554 33 489999999998888889852 22 279999999999999999999999987431
Q ss_pred --------------Ccccccccceeeec
Q psy11399 389 --------------HKHTYLPLEVCNIV 402 (865)
Q Consensus 389 --------------~~~~ylP~Elc~i~ 402 (865)
.+.+++|||+|.+.
T Consensus 225 ~~r~~~~~~~~~~~~~~v~L~PELC~vt 252 (756)
T 2qvw_A 225 DHQIPAPGSWDDLAPKLRFLPPELCLLL 252 (756)
T ss_dssp TCCCCSTTC-CCSCSSCEEECTTTCEEC
T ss_pred ccccccccccccCCccceeeCHHHheee
Confidence 12479999999994
No 20
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=47.09 E-value=36 Score=34.68 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=41.4
Q ss_pred cCCceeEEEccCCCCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHHhhhh
Q psy11399 766 SRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLV 824 (865)
Q Consensus 766 arPt~Y~Vl~d~~~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar~~l~ 824 (865)
.+|....+-| .++.|+--.++-.+| ++.-++|.|++.||++|.++|..+.
T Consensus 185 ~kPlyVS~Gh---~i~l~~A~~~v~~~~------~~~yRlPEP~R~AD~~a~~~r~~l~ 234 (246)
T 3ga2_A 185 VKPIFLSCGN---YIDLDSSYQITMSLI------NQESRLPIPVRLADLETHVLRTFYQ 234 (246)
T ss_dssp SCCEEEEEEE---SSCHHHHHHHHHHTC------CTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccC---CCCHHHHHHHHHHHc------cCCCCCChHHHHHHHHHHHHHHHHH
Confidence 5777777766 688999888888876 4457899999999999999998775
No 21
>2rms_B MSIN3A-binding protein; protein/protein interaction, PAH domain, SIN3 corepressor, transcription repression, transcription regulation; NMR {Mus musculus}
Probab=39.10 E-value=32 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----CCCCCC
Q psy11399 32 GAPPPGAPGAPPGPVAPPGAV-----PAPPGA 58 (865)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 58 (865)
|.|.|+--++|-.+.-+|..+ |++++|
T Consensus 22 GeprP~ss~a~~p~~g~Pdp~~~sd~p~psG~ 53 (61)
T 2rms_B 22 GEQTPNCVASSLPSTSCPDPVSVSEDPGPSGD 53 (61)
T ss_dssp TTSSSSSCCCTTTSSSCSSCCCCCCCCSSSCS
T ss_pred CCCCCcccCCCCCCCCCCCCcccCCCCCCCCC
Confidence 555555555555555555544 555555
No 22
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=21.00 E-value=52 Score=20.77 Aligned_cols=9 Identities=44% Similarity=0.973 Sum_probs=5.2
Q ss_pred CCCCCCCCC
Q psy11399 31 AGAPPPGAP 39 (865)
Q Consensus 31 ~~~~~~~~~ 39 (865)
||||+|.-|
T Consensus 3 PG~P~P~LP 11 (26)
T 1wa7_B 3 PGMPTPPLP 11 (26)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 566665544
No 23
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=20.61 E-value=1e+02 Score=29.87 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHhhccccccCCCCCCchHHHHHHHHHHHHH
Q psy11399 779 HFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR 820 (865)
Q Consensus 779 ~~~~d~lq~lTy~Lc~~y~~~t~sVsiPaP~yyA~~~a~Rar 820 (865)
+++.++-.+++-.+| .-=++|.|+.+||++|...+
T Consensus 142 Gi~l~~A~~iv~~~~-------~~~riPEPlR~Ahlia~~~~ 176 (184)
T 2qh9_A 142 GLTPSEAEKLVKASL-------IKGNMPEPVRISHLVASAII 176 (184)
T ss_dssp SSCHHHHHHHHHHHC-------SSSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-------ccCCCchhHHHHHHHHHhhh
Confidence 578888888887765 22379999999999987543
Done!