RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11399
(865 letters)
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 259 bits (662), Expect = 5e-79
Identities = 42/391 (10%), Positives = 102/391 (26%), Gaps = 79/391 (20%)
Query: 507 VWDMRGKQFYTGVEIRVWAIACFAPQRT--------------VREDSLRSFTQQLQKISN 552
V D +GK +R + C + E F ++L
Sbjct: 8 VLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLK 67
Query: 553 DAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQALQLVVVVLPGKTP--------VYAE 604
+ G+ + + A ++ + + + + + LV+V L +Y
Sbjct: 68 NKGIKLKIKGKSLILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDF 127
Query: 605 VKRVGDTVLGMATQCVQAKNV-NKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEP 663
VKR + +Q + + + N+ L N+ ++ K G I L
Sbjct: 128 VKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEIEGK-----V 181
Query: 664 VIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSM----- 718
F+G D++ ++A +++ ++
Sbjct: 182 DAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLL 241
Query: 719 --------------------------VRLFCAD----------KKEQSGK---SGNIPAG 739
+ + K + + + G
Sbjct: 242 EKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKG 301
Query: 740 TTVDIGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDADELQCLTYQLCHTYVRC 799
+ +Q +GT +P ++ + + L L
Sbjct: 302 YFY----KLSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSS 355
Query: 800 TRSVSIPAPAYYAHLVAFRARYHLVEKEHDS 830
+ + +PA +Y+ + + + +
Sbjct: 356 FQPIKLPATVHYSDKITKLMLRGIEPIKKEG 386
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 225 bits (575), Expect = 5e-66
Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 76/378 (20%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFT-QQLQKISNDAGMPIIGQPCFCKYATGP 571
K Y + + ++A R+ E L + +K+ + G
Sbjct: 86 KSMYYSLAKKYNSLA--KKARSTNEIGLPFLDFRGKEKVITEDLNSDKGII--------- 134
Query: 572 DQVEPMFRYLKSTFQALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNK---- 627
+ VE + ++K L + + + E+KR L + +Q V +
Sbjct: 135 EVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDK 193
Query: 628 -----TSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKP 682
NL ++ KLG +L +G DV +
Sbjct: 194 YDRNRLDLFVRHNLLFQVLSKLGVKYYVL------DYRFNYDYIIGIDVAPMKRSEGYIG 247
Query: 683 SIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRLFCADKKEQSGKSG-------- 734
A + S R +++ + R E + + K+
Sbjct: 248 GSAVMFDSQGYI--RKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRD 305
Query: 735 -----------------------------NIPAGTTVDIGITHPTEFDFYLCSHQGIQGT 765
N P ++ + YL H+ Q
Sbjct: 306 GRITNNEEEGLKYISEMFDIEVVTMDVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAK 365
Query: 766 SRPSHYHVLWD--------DNHFDADELQCLTYQLCH-TYVRCTRSVSIPAPAYYAHLVA 816
P + + + + L Y + + +PAP +YAH A
Sbjct: 366 GTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFA 425
Query: 817 FRARYHLVEKEHDSGEGS 834
R KE EG
Sbjct: 426 NAIRNEWKIKEEFLAEGF 443
Score = 37.2 bits (86), Expect = 0.009
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 27/145 (18%)
Query: 352 QLENGQTVE----CTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHT-YLPLEVCNIVAGQR 406
+LEN V +V L+ K +L L K+ LP EV +
Sbjct: 4 ELENKIRVRDDKGNSVPISQLNVQKSQL------LLWTNYSRKYPVILPYEVPEKF-RKI 56
Query: 407 CIKKLTDMQTSTM---IKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEV 463
+ + S + I+ A + + +N +++
Sbjct: 57 REIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYN----------SLAKKARST 106
Query: 464 RGRVLPPPKLQYGGRMSSITAQVNS 488
L P L + G+ IT +NS
Sbjct: 107 NEIGL--PFLDFRGKEKVITEDLNS 129
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C
1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 176 bits (448), Expect = 2e-52
Identities = 103/125 (82%), Positives = 117/125 (93%)
Query: 282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMKRKYRVCNVTR 341
+QPVIEFMCEVLDIR+++EQ KPLTDSQRV+FTKEIKGLK+E+THCG MKRKYRVCNVTR
Sbjct: 2 AQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTR 61
Query: 342 RPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEVCNI 401
RPA Q+FPLQLE+GQTVECTVA+YF KY ++L++PHLPCLQVGQE KHTYLPLEVCNI
Sbjct: 62 RPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNI 121
Query: 402 VAGQR 406
VAGQR
Sbjct: 122 VAGQR 126
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 178 bits (453), Expect = 1e-50
Identities = 40/305 (13%), Positives = 83/305 (27%), Gaps = 84/305 (27%)
Query: 586 QALQLVVVVLPGK-TPVYAEVKRVGDTVLGMATQCVQAKNV-NKTSPQTLSNLCLKINVK 643
+ +++VLP TP+Y ++K + + +Q ++ + N+ + NL ++ K
Sbjct: 14 TGVDGIMLVLPEYNTPLYYKLKSY--LINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSK 71
Query: 644 LGGINSILVPSIRPKVFNEPVIFMGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVR 703
LGG IL ++ P+ ++ +I G T ++ + +
Sbjct: 72 LGGKPWIL--NVDPEKGSDIII--GTGATRI-----DNVNLFCFAMVFKKDGTMLWNEIS 122
Query: 704 VQQHR------------------------------------------QEIIQELSSMVRL 721
+ L V
Sbjct: 123 PIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEE 182
Query: 722 FCADKKEQ---------------------SGKSGNIPAGTTVDIG-ITHPTEFDFYLCSH 759
+ + GT V + +
Sbjct: 183 LKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKR 242
Query: 760 QGIQG--TSRPSHYHVLWDDN-----HFDADELQCLTYQLCHTYVRCTRSVSIPAPAYYA 812
G++ +P ++ D+ + + E+ Y L R RS ++P Y
Sbjct: 243 NGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYP 302
Query: 813 HLVAF 817
LVA
Sbjct: 303 KLVAG 307
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 137 bits (347), Expect = 1e-38
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 282 SQPVIEFMCEVLDIRDVNEQRKPLTDSQRVKFTKEIKGLKIEITHCGTM---KRKYRVCN 338
+ P+IE++ +N D R ++G+ + T + R YRV
Sbjct: 4 AMPMIEYLERFSLKAKINNT--TNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNG 61
Query: 339 VTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQVGQEHKHTYLPLEV 398
++R PA ++F +G+ V T+A YF + L+FP L CL VG K LP+E+
Sbjct: 62 LSRAPASSETFE---HDGKKV--TIASYFHSRNY-PLKFPQLHCLNVGSSIKSILLPIEL 115
Query: 399 CNIVAGQ 405
C+I GQ
Sbjct: 116 CSIEEGQ 122
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 46.0 bits (109), Expect = 1e-05
Identities = 32/360 (8%), Positives = 91/360 (25%), Gaps = 69/360 (19%)
Query: 94 IVLRANHFQISMPRGF--VHHYEIQIQPDKCPRKVNREIIETMVHAYSKIFGALKPVFDG 151
++ N +I+ ++ Y + P++ +K I + +
Sbjct: 2 AIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVI-----DPEN 56
Query: 152 RNNLYTRDPLPIGNDRMELEVTLPGEGKDRVFRVAIKWQAQVSLFALEEALEGRTRQIPF 211
+ T L E Q
Sbjct: 57 -LIIATTKELE---YEGEFIPEGEISFS----------------------ELRNDYQ--- 87
Query: 212 DAILALDVVMR-HLPSMTYTPVGRSFFSTPDGYYHPLGGGR-EVWFGFHQSVRPSQWKMM 269
+ L L ++ + + + R + P G +V SV
Sbjct: 88 -SKLVLRLLKENGIGEYELSKLLRK-------FRKPKTFGDYKVIPSVEMSVIKHDEDFY 139
Query: 270 LNIDVSATAFYKSQPVIEFMCEVLDIRDVNEQR-KPLTDSQRVKFTKEIKGLKIEITHCG 328
L I + + + E + + + K + + + K
Sbjct: 140 LVIHIIHQIQ-SMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKTVY-KPCFEEYT 197
Query: 329 TMKRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCL----Q 384
+K ++ + ++ ++ +++ ++ L+ P +
Sbjct: 198 ---KKPKLDHNQEIVKYWYNYHIERYWNTPE--AKLEFYRKFGQVDLKQPAILAKFASKI 252
Query: 385 VGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATA---RSAPD-REREIQSLVKR 440
++ YL ++ + S + K + P+ R+ +++++
Sbjct: 253 KKNKNYKIYLLPQLVVPTY-------NAEQLESDVAKEILEYTKLMPEERKELLENILAE 305
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 34.5 bits (79), Expect = 0.018
Identities = 11/46 (23%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 31 AGAPPPGAPGAPPGP-VAPPGAVPAPPGAMGLIPPNQPPQPVQPPE 75
A A P P A A + QP VQ E
Sbjct: 6 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQE 51
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 33.2 bits (76), Expect = 0.041
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 19 NSIFTCGGQTKCAGAPPPGAPGAPPGPVAPPGAVPAPPGA 58
++IF G + A AP P A
Sbjct: 9 SAIF---GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 27.4 bits (61), Expect = 3.8
Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 2/34 (5%)
Query: 38 APGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPV 71
A +P G AP A P +
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTA--PQPTAAPSI 47
Score = 27.1 bits (60), Expect = 4.8
Identities = 9/38 (23%), Positives = 10/38 (26%), Gaps = 5/38 (13%)
Query: 37 GAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPP 74
+ A PG P A A P P P
Sbjct: 14 DSAAASPGGAQAPATTGAAGTA-----PTAPQPTAAPS 46
Score = 26.3 bits (58), Expect = 8.2
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 31 AGAPPPGAPGAPPGPVAPPGAVPA 54
AP AP AP V
Sbjct: 28 TTGAAGTAPTAPQPTAAPSIDVAP 51
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
[TaxId: 1931]}
Length = 258
Score = 30.4 bits (68), Expect = 0.70
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 22 FTCGGQTKCAGAPPPGAPGAPPGPVAPPGAVPAPPGAMG 60
+TC ++ A + A P P A G
Sbjct: 220 WTCQNKSNIASVWFAASGNAGCMPTMHKDTNPKASPATG 258
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 29.4 bits (66), Expect = 0.88
Identities = 15/57 (26%), Positives = 16/57 (28%), Gaps = 13/57 (22%)
Query: 31 AGAPPPGAPG-------------APPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPP 74
A P G PG P A P P P PP P+ PP
Sbjct: 70 ASLIPKGYPGRVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126
Score = 28.7 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 34 PPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPP 74
P AP AP P P PP PP P V PP
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPP------PPPSPEAHVPPP 127
Score = 27.5 bits (61), Expect = 4.0
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 31 AGAPPPGAPGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPP 74
AP P PP P P + PP V+P
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSP------EAHVPPPYVEPT 132
Score = 26.4 bits (58), Expect = 9.2
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 6/48 (12%)
Query: 38 APGAPPGPVAPPGAVPAPPGAMGLIPPNQPPQPVQPPELPMFNCPRRP 85
+ P P P PP PP + P + P
Sbjct: 93 VSPSAPAAPVPTPICPTTT------PPPPPPPSPEAHVPPPYVEPTTT 134
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId:
103690]}
Length = 98
Score = 27.4 bits (61), Expect = 2.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 196 FALEEALEGRTRQIPFDAILALDVVMRHLPSM 227
F+ + LEGR + D L L ++ HL
Sbjct: 61 FSKQLRLEGRGDETLMDYRLTLIDILAHLCEA 92
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 28.7 bits (64), Expect = 3.2
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 406 RCIKKLTDMQTSTMIKATARSAPDREREIQSLVKRADFNNDAYVHEFGLTISNSMMEVRG 465
R + + + T + + R I +L +A+ V G+T++
Sbjct: 123 RVVSS--NSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVR--GITLNKLTTTSAP 178
Query: 466 RVLPPPKLQYGGRMSSITAQVN 487
VL +Q G + ++ VN
Sbjct: 179 EVLTKSTMQQLGSLMALDVIVN 200
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 27.0 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 196 FALEEALEGRTRQIPFDAILALDVVMRHLPSM 227
F+ + LEGR+ I D L L V+ HL M
Sbjct: 71 FSKQLKLEGRSEDILLDYRLTLIDVIAHLCEM 102
>d1ha4a_ b.11.1.1 (A:) gamma-Crystallin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 26.6 bits (59), Expect = 3.7
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 475 YGGRMSSITAQVNSMSSQGLFASKQQALPNSGVW------DMRGKQFYTGV-EIRVWAIA 527
+ G+M T S+ Q GVW + RG+Q+ E R
Sbjct: 13 FSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPI-D 71
Query: 528 CFAPQRTVREDSLRSFTQ 545
A V+ S R +
Sbjct: 72 WGAASPAVQ--SFRRIVE 87
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA,
N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 27.3 bits (60), Expect = 4.4
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 513 KQFYTGVEIRVWAIACFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPC 563
E V + + + ++L +I++ GM IIG C
Sbjct: 79 DTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNC 129
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 26.6 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 196 FALEEALEGRTRQIPFDAILALDVVMRHLPSM 227
FA + +EGR+ I D L L V+ HL M
Sbjct: 68 FAKKLRVEGRSEDILLDYRLTLIDVIAHLCEM 99
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 116
Score = 26.5 bits (58), Expect = 7.0
Identities = 4/44 (9%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 522 RVWAIA--CFAPQRTVREDSLRSFTQQLQKISNDAGMPIIGQPC 563
+A + ++++++ AG+ C
Sbjct: 68 VGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRC 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,289,151
Number of extensions: 159501
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 31
Length of query: 865
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 772
Effective length of database: 1,130,706
Effective search space: 872905032
Effective search space used: 872905032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)