Query psy114
Match_columns 609
No_of_seqs 454 out of 1027
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:27:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05529 Bap31: B-cell recepto 100.0 4.6E-37 1E-41 300.7 17.6 156 1-157 1-158 (192)
2 KOG1962|consensus 100.0 2.5E-32 5.3E-37 264.0 16.5 144 4-149 1-145 (216)
3 COG5374 Uncharacterized conser 100.0 2.9E-29 6.4E-34 231.7 14.3 154 1-158 1-166 (192)
4 KOG1962|consensus 99.7 3E-16 6.5E-21 152.4 11.7 109 483-608 108-216 (216)
5 PF05529 Bap31: B-cell recepto 99.0 1.9E-09 4.1E-14 105.7 9.4 80 484-588 113-192 (192)
6 PF01437 PSI: Plexin repeat; 97.8 5E-06 1.1E-10 63.6 0.6 37 278-315 1-38 (51)
7 smart00423 PSI domain found in 97.2 0.00016 3.4E-09 54.0 1.6 34 279-314 1-35 (46)
8 KOG3610|consensus 97.1 0.00017 3.7E-09 85.1 0.8 56 434-491 1-59 (1025)
9 PF14662 CCDC155: Coiled-coil 96.2 0.086 1.9E-06 51.1 12.6 114 483-601 23-139 (193)
10 PF01437 PSI: Plexin repeat; 95.4 0.0043 9.3E-08 47.4 0.2 35 438-474 1-36 (51)
11 PF14662 CCDC155: Coiled-coil 95.4 0.14 3E-06 49.6 10.2 105 492-598 11-115 (193)
12 PF02183 HALZ: Homeobox associ 95.3 0.034 7.4E-07 41.3 4.6 34 569-602 3-36 (45)
13 PF10186 Atg14: UV radiation r 95.3 0.16 3.4E-06 52.9 11.3 58 545-602 86-143 (302)
14 PF08317 Spc7: Spc7 kinetochor 95.1 0.44 9.5E-06 50.7 14.4 110 489-599 156-265 (325)
15 PF08317 Spc7: Spc7 kinetochor 94.3 0.95 2.1E-05 48.2 14.4 111 492-603 152-262 (325)
16 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.0 1.5 3.2E-05 40.4 13.3 58 545-602 68-129 (132)
17 smart00423 PSI domain found in 94.0 0.03 6.5E-07 41.7 1.6 30 444-474 5-34 (46)
18 PF13851 GAS: Growth-arrest sp 93.5 1.2 2.6E-05 44.1 12.3 108 486-598 20-127 (201)
19 TIGR03752 conj_TIGR03752 integ 93.4 0.42 9.2E-06 52.5 9.6 28 575-602 113-140 (472)
20 PF08614 ATG16: Autophagy prot 93.2 0.29 6.2E-06 48.2 7.6 112 483-599 68-179 (194)
21 PRK09039 hypothetical protein; 93.1 0.89 1.9E-05 48.8 11.6 51 543-593 137-187 (343)
22 PF10473 CENP-F_leu_zip: Leuci 93.0 2.9 6.2E-05 39.0 13.3 78 486-568 21-98 (140)
23 PF04156 IncA: IncA protein; 92.9 1.8 3.8E-05 42.2 12.6 108 487-599 79-186 (191)
24 PF09726 Macoilin: Transmembra 92.9 1.4 3.1E-05 51.5 13.6 54 545-598 547-600 (697)
25 COG4372 Uncharacterized protei 92.8 1.5 3.4E-05 46.6 12.3 52 549-600 115-166 (499)
26 smart00787 Spc7 Spc7 kinetocho 92.6 1.6 3.5E-05 46.2 12.4 109 492-601 147-255 (312)
27 PRK09039 hypothetical protein; 92.5 2.2 4.8E-05 45.7 13.7 42 552-593 139-180 (343)
28 PF07888 CALCOCO1: Calcium bin 92.3 2.2 4.8E-05 48.0 13.5 91 488-583 149-239 (546)
29 COG1579 Zn-ribbon protein, pos 92.1 2.1 4.5E-05 43.4 12.0 33 570-602 95-127 (239)
30 PF12325 TMF_TATA_bd: TATA ele 91.8 3.9 8.5E-05 37.1 12.3 52 481-532 15-66 (120)
31 PF04111 APG6: Autophagy prote 91.7 0.35 7.7E-06 51.2 6.4 47 544-590 58-104 (314)
32 PF13851 GAS: Growth-arrest sp 91.5 5.3 0.00011 39.6 14.0 99 490-597 28-133 (201)
33 KOG0971|consensus 91.3 3 6.6E-05 48.9 13.4 45 558-602 397-441 (1243)
34 PF06810 Phage_GP20: Phage min 91.3 0.84 1.8E-05 43.3 7.8 50 547-596 24-76 (155)
35 KOG0996|consensus 91.3 0.96 2.1E-05 54.3 9.7 60 543-602 907-966 (1293)
36 PF11559 ADIP: Afadin- and alp 91.2 5.5 0.00012 37.3 13.3 113 484-601 33-149 (151)
37 PF10211 Ax_dynein_light: Axon 91.2 3.2 7E-05 40.7 12.0 103 481-602 83-187 (189)
38 PF04849 HAP1_N: HAP1 N-termin 90.6 4.2 9E-05 42.7 12.7 107 481-602 159-265 (306)
39 PF07888 CALCOCO1: Calcium bin 90.6 2.5 5.4E-05 47.6 11.8 50 485-534 167-216 (546)
40 PF10205 KLRAQ: Predicted coil 90.6 4.2 9.1E-05 35.6 10.7 69 518-598 6-74 (102)
41 PRK11637 AmiB activator; Provi 90.6 2.7 5.8E-05 46.5 12.2 46 548-593 80-125 (428)
42 COG5374 Uncharacterized conser 90.5 0.5 1.1E-05 45.2 5.4 42 557-602 143-184 (192)
43 COG1579 Zn-ribbon protein, pos 90.5 7.8 0.00017 39.3 14.2 48 543-590 89-136 (239)
44 KOG0995|consensus 90.5 2.3 5E-05 47.7 11.3 56 547-602 291-349 (581)
45 PF11559 ADIP: Afadin- and alp 90.4 7.3 0.00016 36.5 13.3 47 552-598 75-121 (151)
46 PF05266 DUF724: Protein of un 90.3 2.8 6.1E-05 41.1 10.6 53 543-595 131-183 (190)
47 PF04111 APG6: Autophagy prote 89.9 1.4 3.1E-05 46.6 8.9 44 554-597 61-104 (314)
48 PRK10884 SH3 domain-containing 89.9 1.5 3.2E-05 43.6 8.4 17 548-564 137-153 (206)
49 KOG0995|consensus 89.8 4.7 0.0001 45.3 12.9 29 484-512 240-268 (581)
50 TIGR03185 DNA_S_dndD DNA sulfu 89.0 4 8.6E-05 47.7 12.5 84 510-596 391-474 (650)
51 PF10473 CENP-F_leu_zip: Leuci 89.0 15 0.00033 34.2 13.8 94 492-597 6-99 (140)
52 TIGR02169 SMC_prok_A chromosom 88.9 4.1 9E-05 50.4 13.4 9 211-219 23-31 (1164)
53 KOG0933|consensus 88.7 4.6 9.9E-05 48.1 12.3 46 545-590 789-834 (1174)
54 KOG0994|consensus 88.4 4.1 8.9E-05 49.0 11.6 54 545-598 1621-1674(1758)
55 PF00038 Filament: Intermediat 88.2 4.8 0.0001 42.3 11.5 35 484-518 6-40 (312)
56 PRK10884 SH3 domain-containing 87.9 2 4.4E-05 42.7 7.8 6 480-485 76-81 (206)
57 smart00787 Spc7 Spc7 kinetocho 87.8 12 0.00027 39.5 14.1 113 486-599 148-260 (312)
58 KOG1003|consensus 87.7 7.1 0.00015 38.1 11.0 54 545-598 132-185 (205)
59 PF15254 CCDC14: Coiled-coil d 87.6 6.6 0.00014 45.6 12.4 117 486-602 431-553 (861)
60 KOG4674|consensus 87.2 7.7 0.00017 49.5 13.7 114 483-596 1244-1364(1822)
61 PF12718 Tropomyosin_1: Tropom 87.2 11 0.00024 35.3 11.9 103 483-601 36-138 (143)
62 PRK04863 mukB cell division pr 86.8 5.8 0.00013 50.4 12.7 52 549-600 368-419 (1486)
63 PF12718 Tropomyosin_1: Tropom 86.7 4.2 9.1E-05 38.0 8.8 21 506-526 3-23 (143)
64 COG5185 HEC1 Protein involved 86.7 8.1 0.00018 42.4 11.9 32 550-581 330-361 (622)
65 COG1842 PspA Phage shock prote 86.7 17 0.00036 36.7 13.6 113 485-597 27-139 (225)
66 COG1382 GimC Prefoldin, chaper 86.6 24 0.00053 31.9 13.2 107 482-599 6-112 (119)
67 KOG0996|consensus 86.6 7.9 0.00017 46.9 12.7 27 570-596 506-532 (1293)
68 PF14235 DUF4337: Domain of un 86.5 3.4 7.4E-05 39.3 8.2 46 553-598 69-114 (157)
69 COG1196 Smc Chromosome segrega 86.5 6.7 0.00015 49.0 13.1 47 485-531 379-425 (1163)
70 PF09744 Jnk-SapK_ap_N: JNK_SA 86.4 4.5 9.7E-05 38.5 8.9 110 482-598 22-144 (158)
71 PRK11281 hypothetical protein; 86.0 8.6 0.00019 47.5 13.2 114 489-602 66-180 (1113)
72 PF06818 Fez1: Fez1; InterPro 85.8 9.7 0.00021 37.6 11.0 80 484-568 26-105 (202)
73 KOG0977|consensus 85.7 5.5 0.00012 45.0 10.5 96 507-602 279-380 (546)
74 PF15619 Lebercilin: Ciliary p 85.6 24 0.00052 34.8 13.9 116 484-603 63-189 (194)
75 PRK10929 putative mechanosensi 85.6 7.8 0.00017 47.7 12.5 116 486-602 113-232 (1109)
76 PRK02224 chromosome segregatio 85.5 7.4 0.00016 47.0 12.5 54 546-599 380-433 (880)
77 PF10498 IFT57: Intra-flagella 85.3 19 0.00041 38.9 14.1 62 545-606 261-322 (359)
78 PF10146 zf-C4H2: Zinc finger- 84.8 17 0.00037 36.7 12.7 50 551-600 54-103 (230)
79 PF06005 DUF904: Protein of un 84.7 7 0.00015 32.1 8.1 20 580-599 41-60 (72)
80 PF06156 DUF972: Protein of un 84.5 3.2 6.9E-05 36.9 6.5 47 549-602 7-53 (107)
81 TIGR00606 rad50 rad50. This fa 84.2 11 0.00025 47.6 13.7 108 483-595 823-933 (1311)
82 TIGR02894 DNA_bind_RsfA transc 84.0 15 0.00032 34.9 10.9 52 547-598 101-152 (161)
83 PF09738 DUF2051: Double stran 84.0 9 0.0002 40.3 10.6 84 514-602 88-171 (302)
84 COG4372 Uncharacterized protei 83.9 16 0.00034 39.3 12.1 47 483-529 75-121 (499)
85 KOG0933|consensus 83.8 7.3 0.00016 46.5 10.7 111 486-596 784-896 (1174)
86 PHA02562 46 endonuclease subun 83.6 11 0.00024 42.9 12.2 46 544-589 359-404 (562)
87 KOG0980|consensus 83.4 16 0.00035 43.1 13.0 33 501-533 443-475 (980)
88 PF04156 IncA: IncA protein; 83.4 17 0.00037 35.3 11.9 59 544-602 124-182 (191)
89 smart00503 SynN Syntaxin N-ter 83.3 20 0.00043 31.5 11.4 31 572-602 83-113 (117)
90 PF10234 Cluap1: Clusterin-ass 83.3 7 0.00015 40.3 9.3 26 572-597 212-237 (267)
91 PRK15422 septal ring assembly 83.0 7.2 0.00016 32.4 7.4 53 543-602 18-70 (79)
92 PF00038 Filament: Intermediat 83.0 40 0.00086 35.3 15.3 41 562-602 260-300 (312)
93 PF07106 TBPIP: Tat binding pr 82.9 3 6.5E-05 39.9 6.2 57 543-599 72-137 (169)
94 TIGR01843 type_I_hlyD type I s 82.8 26 0.00056 38.0 14.4 28 551-578 204-231 (423)
95 PRK09841 cryptic autophosphory 82.6 16 0.00035 43.3 13.4 120 483-602 268-401 (726)
96 PF05483 SCP-1: Synaptonemal c 82.5 9.7 0.00021 43.7 10.6 43 487-529 504-546 (786)
97 PF10883 DUF2681: Protein of u 82.4 8.6 0.00019 32.8 7.9 50 102-151 3-57 (87)
98 COG1196 Smc Chromosome segrega 82.3 15 0.00033 45.9 13.6 19 572-590 885-903 (1163)
99 PRK04778 septation ring format 82.0 18 0.00039 41.6 13.1 117 483-599 283-404 (569)
100 KOG4360|consensus 81.6 15 0.00032 40.9 11.3 39 495-533 204-242 (596)
101 TIGR03007 pepcterm_ChnLen poly 81.6 17 0.00037 40.8 12.6 31 483-513 205-235 (498)
102 PF10481 CENP-F_N: Cenp-F N-te 81.6 34 0.00073 35.2 13.1 112 486-602 15-133 (307)
103 TIGR02894 DNA_bind_RsfA transc 81.4 8.9 0.00019 36.4 8.4 34 564-597 104-137 (161)
104 PF11932 DUF3450: Protein of u 81.3 16 0.00035 37.3 11.2 38 546-583 59-96 (251)
105 KOG0977|consensus 81.3 18 0.00038 41.1 12.1 121 482-602 42-186 (546)
106 PF15070 GOLGA2L5: Putative go 80.8 7.9 0.00017 44.8 9.6 53 548-600 200-259 (617)
107 PF07798 DUF1640: Protein of u 80.7 6.9 0.00015 37.9 7.9 76 509-592 18-94 (177)
108 PF02403 Seryl_tRNA_N: Seryl-t 80.7 13 0.00028 32.6 9.0 27 545-571 69-95 (108)
109 KOG4403|consensus 80.7 21 0.00045 38.9 11.8 25 544-568 303-327 (575)
110 PF11544 Spc42p: Spindle pole 80.7 8.3 0.00018 31.9 6.9 15 550-564 5-19 (76)
111 KOG3611|consensus 80.6 0.98 2.1E-05 53.0 2.3 36 272-307 487-523 (737)
112 COG1730 GIM5 Predicted prefold 80.4 52 0.0011 30.9 13.2 110 488-604 5-141 (145)
113 COG1340 Uncharacterized archae 80.3 57 0.0012 34.1 14.6 60 543-602 131-196 (294)
114 PRK11519 tyrosine kinase; Prov 80.3 20 0.00043 42.5 13.0 118 482-600 267-399 (719)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.1 20 0.00043 32.9 10.4 36 543-578 59-94 (132)
116 PF13870 DUF4201: Domain of un 80.1 28 0.0006 33.5 11.9 19 584-602 144-162 (177)
117 KOG0946|consensus 80.0 9.8 0.00021 44.4 9.7 57 546-602 809-865 (970)
118 PF09789 DUF2353: Uncharacteri 79.7 16 0.00036 38.6 10.7 29 572-600 134-162 (319)
119 PRK09343 prefoldin subunit bet 79.5 46 0.001 30.1 12.3 109 486-601 4-115 (121)
120 PRK14011 prefoldin subunit alp 79.4 30 0.00065 32.4 11.3 43 489-531 3-45 (144)
121 TIGR00606 rad50 rad50. This fa 79.4 22 0.00048 45.1 13.7 45 484-528 883-927 (1311)
122 PF10174 Cast: RIM-binding pro 79.3 19 0.00042 42.7 12.3 116 483-598 302-423 (775)
123 TIGR01069 mutS2 MutS2 family p 79.1 25 0.00054 42.0 13.3 54 480-533 495-548 (771)
124 PF00261 Tropomyosin: Tropomyo 79.1 27 0.00059 35.3 12.0 57 546-602 172-228 (237)
125 PF06548 Kinesin-related: Kine 78.9 29 0.00064 38.1 12.4 100 489-588 309-472 (488)
126 PRK02224 chromosome segregatio 78.9 27 0.00059 42.2 13.9 10 211-220 23-32 (880)
127 KOG4673|consensus 78.7 25 0.00055 40.4 12.2 96 487-587 344-439 (961)
128 KOG0971|consensus 78.7 24 0.00052 41.8 12.3 28 506-533 258-285 (1243)
129 PRK10361 DNA recombination pro 78.4 33 0.00072 38.4 13.1 55 546-603 143-197 (475)
130 KOG1029|consensus 78.4 13 0.00029 43.1 10.1 36 567-602 468-503 (1118)
131 cd07605 I-BAR_IMD Inverse (I)- 78.3 42 0.00091 33.8 12.8 29 554-582 116-144 (223)
132 PF15619 Lebercilin: Ciliary p 78.2 38 0.00083 33.3 12.2 49 554-602 86-135 (194)
133 PF04012 PspA_IM30: PspA/IM30 77.8 33 0.0007 34.2 12.0 38 486-523 34-71 (221)
134 PF05701 WEMBL: Weak chloropla 77.7 36 0.00078 38.8 13.6 48 484-531 304-351 (522)
135 PRK00106 hypothetical protein; 77.4 23 0.00049 40.4 11.7 36 559-594 120-155 (535)
136 PF09726 Macoilin: Transmembra 77.4 33 0.00072 40.4 13.4 37 547-583 542-578 (697)
137 PF05483 SCP-1: Synaptonemal c 77.3 20 0.00044 41.2 11.0 109 494-602 441-551 (786)
138 PLN03188 kinesin-12 family pro 77.3 20 0.00043 44.3 11.6 47 521-567 1132-1197(1320)
139 PF05667 DUF812: Protein of un 77.3 25 0.00054 40.6 12.1 33 570-602 446-478 (594)
140 PF01833 TIG: IPT/TIG domain; 77.3 9.6 0.00021 31.1 6.8 58 182-242 2-60 (85)
141 KOG0250|consensus 77.2 15 0.00032 44.4 10.5 24 570-593 407-430 (1074)
142 KOG0963|consensus 77.2 31 0.00068 39.3 12.4 53 546-599 306-358 (629)
143 PF12777 MT: Microtubule-bindi 77.2 2.9 6.2E-05 44.9 4.4 56 546-601 217-272 (344)
144 KOG4673|consensus 76.9 16 0.00035 41.9 10.1 50 545-594 518-567 (961)
145 PF09731 Mitofilin: Mitochondr 76.9 21 0.00045 41.1 11.6 35 480-514 249-288 (582)
146 KOG0250|consensus 76.9 31 0.00066 41.9 12.8 102 501-602 694-807 (1074)
147 PRK14148 heat shock protein Gr 76.8 6.4 0.00014 38.8 6.3 40 543-582 40-79 (195)
148 cd00179 SynN Syntaxin N-termin 76.7 46 0.001 30.7 12.0 29 573-601 83-111 (151)
149 KOG0994|consensus 76.7 26 0.00056 42.7 11.9 51 105-155 1241-1291(1758)
150 PF05587 Anth_Ig: Anthrax rece 76.5 0.9 1.9E-05 40.0 0.3 92 178-277 3-98 (105)
151 COG3074 Uncharacterized protei 76.4 19 0.0004 29.2 7.5 53 543-602 18-70 (79)
152 KOG0161|consensus 76.4 25 0.00054 45.7 12.7 14 509-522 1005-1018(1930)
153 PF04849 HAP1_N: HAP1 N-termin 76.3 14 0.00029 38.9 8.8 29 505-533 236-264 (306)
154 PF09730 BicD: Microtubule-ass 76.2 24 0.00051 41.5 11.6 23 581-603 124-146 (717)
155 PRK12704 phosphodiesterase; Pr 76.2 21 0.00046 40.6 11.1 38 558-595 104-141 (520)
156 KOG0243|consensus 76.2 24 0.00052 42.8 11.8 56 547-602 501-556 (1041)
157 TIGR03319 YmdA_YtgF conserved 76.1 22 0.00047 40.4 11.2 25 569-593 102-126 (514)
158 PF09789 DUF2353: Uncharacteri 75.9 42 0.0009 35.6 12.4 58 545-602 135-206 (319)
159 KOG1937|consensus 75.9 31 0.00067 37.9 11.5 92 485-585 289-380 (521)
160 KOG0161|consensus 75.8 28 0.0006 45.3 12.9 51 545-595 1092-1142(1930)
161 PRK01203 prefoldin subunit alp 75.6 34 0.00075 31.5 10.2 91 493-583 4-120 (130)
162 PF08614 ATG16: Autophagy prot 75.4 9 0.0002 37.6 7.0 54 545-598 118-171 (194)
163 PRK15422 septal ring assembly 75.3 14 0.00029 30.9 6.7 50 552-601 6-62 (79)
164 KOG0946|consensus 75.2 46 0.001 39.2 13.2 88 492-579 667-773 (970)
165 PF06103 DUF948: Bacterial pro 75.0 15 0.00032 31.2 7.4 46 553-598 22-67 (90)
166 KOG0249|consensus 75.0 53 0.0012 38.2 13.5 36 567-602 219-254 (916)
167 PRK14154 heat shock protein Gr 74.9 22 0.00047 35.4 9.4 44 543-586 52-95 (208)
168 PF02403 Seryl_tRNA_N: Seryl-t 74.8 23 0.0005 31.0 8.9 58 545-602 38-98 (108)
169 PF05615 THOC7: Tho complex su 74.7 52 0.0011 30.3 11.6 13 585-597 115-127 (139)
170 PRK13169 DNA replication intia 74.5 11 0.00024 33.6 6.6 47 550-603 8-54 (110)
171 PF05701 WEMBL: Weak chloropla 74.5 33 0.00072 39.0 12.2 33 122-154 70-102 (522)
172 PF10168 Nup88: Nuclear pore c 74.4 24 0.00053 41.7 11.4 31 572-602 640-670 (717)
173 PF00435 Spectrin: Spectrin re 74.4 44 0.00095 27.7 10.4 31 571-601 73-103 (105)
174 TIGR02977 phageshock_pspA phag 74.3 48 0.001 33.2 12.0 38 486-523 35-72 (219)
175 PF04012 PspA_IM30: PspA/IM30 74.2 94 0.002 30.9 14.2 44 548-591 96-139 (221)
176 PF12329 TMF_DNA_bd: TATA elem 73.9 18 0.00039 29.8 7.4 19 572-590 48-66 (74)
177 KOG2751|consensus 73.9 13 0.00029 40.5 8.1 46 543-588 190-235 (447)
178 PF14523 Syntaxin_2: Syntaxin- 73.5 35 0.00077 29.3 9.6 29 574-602 67-95 (102)
179 TIGR01069 mutS2 MutS2 family p 73.4 16 0.00034 43.7 9.6 47 485-531 507-553 (771)
180 TIGR03545 conserved hypothetic 73.4 17 0.00037 41.6 9.5 44 542-585 211-254 (555)
181 PF15254 CCDC14: Coiled-coil d 73.3 26 0.00056 41.0 10.7 57 543-602 462-518 (861)
182 PF13094 CENP-Q: CENP-Q, a CEN 73.2 17 0.00038 34.4 8.2 51 549-599 40-91 (160)
183 PF07061 Swi5: Swi5; InterPro 73.2 8.5 0.00018 32.6 5.3 56 547-602 4-63 (83)
184 PF02841 GBP_C: Guanylate-bind 73.1 34 0.00075 35.8 11.2 17 582-598 258-274 (297)
185 KOG0979|consensus 73.0 22 0.00047 42.7 10.3 49 554-602 308-356 (1072)
186 TIGR02231 conserved hypothetic 72.6 28 0.00061 39.5 11.2 101 480-591 69-172 (525)
187 PF09728 Taxilin: Myosin-like 72.6 33 0.00072 36.3 10.9 121 480-602 20-145 (309)
188 PHA02047 phage lambda Rz1-like 72.6 12 0.00025 32.4 5.9 47 550-596 34-80 (101)
189 cd07658 F-BAR_NOSTRIN The F-BA 72.5 99 0.0021 31.4 14.0 45 549-593 170-214 (239)
190 PRK04863 mukB cell division pr 72.5 35 0.00076 43.7 12.7 6 213-218 29-34 (1486)
191 COG4942 Membrane-bound metallo 72.4 78 0.0017 34.8 13.7 16 575-590 228-243 (420)
192 KOG2991|consensus 72.3 43 0.00093 34.1 10.8 48 559-609 266-313 (330)
193 KOG0964|consensus 72.3 52 0.0011 39.6 12.9 57 543-599 411-467 (1200)
194 PF09755 DUF2046: Uncharacteri 72.3 59 0.0013 34.2 12.3 25 485-509 23-47 (310)
195 KOG0976|consensus 72.1 49 0.0011 38.9 12.4 102 496-602 294-396 (1265)
196 PHA02562 46 endonuclease subun 72.0 29 0.00063 39.5 11.2 28 552-579 222-249 (562)
197 PF03962 Mnd1: Mnd1 family; I 72.0 51 0.0011 32.3 11.3 53 547-599 107-163 (188)
198 PF12128 DUF3584: Protein of u 72.0 43 0.00093 42.2 13.4 46 486-531 604-649 (1201)
199 PRK03918 chromosome segregatio 71.8 57 0.0012 39.4 14.1 6 213-218 25-30 (880)
200 TIGR02680 conserved hypothetic 71.8 36 0.00078 43.4 12.7 45 546-590 279-323 (1353)
201 PF15066 CAGE1: Cancer-associa 71.8 55 0.0012 36.2 12.2 45 552-596 465-510 (527)
202 cd07655 F-BAR_PACSIN The F-BAR 71.7 53 0.0012 33.7 12.0 46 548-593 166-211 (258)
203 KOG0999|consensus 71.6 12 0.00025 42.0 7.2 60 543-602 8-74 (772)
204 PF05010 TACC: Transforming ac 71.3 80 0.0017 31.5 12.5 44 556-599 160-203 (207)
205 TIGR01005 eps_transp_fam exopo 71.2 35 0.00077 40.5 12.0 113 481-601 287-406 (754)
206 KOG0972|consensus 71.0 37 0.0008 35.2 10.1 103 500-607 227-330 (384)
207 PF06156 DUF972: Protein of un 71.0 14 0.0003 32.9 6.4 25 489-513 8-32 (107)
208 PRK13729 conjugal transfer pil 70.9 14 0.00031 40.9 7.8 47 556-602 75-121 (475)
209 PF12761 End3: Actin cytoskele 70.8 37 0.0008 33.4 9.8 21 566-586 162-182 (195)
210 PF05266 DUF724: Protein of un 70.8 86 0.0019 30.8 12.5 17 484-500 88-104 (190)
211 KOG0999|consensus 70.6 31 0.00068 38.8 10.2 34 503-536 43-76 (772)
212 PF10211 Ax_dynein_light: Axon 70.5 39 0.00085 33.1 10.1 104 491-600 68-178 (189)
213 PF15294 Leu_zip: Leucine zipp 70.4 41 0.00089 34.9 10.6 37 499-535 135-171 (278)
214 KOG4571|consensus 70.2 22 0.00047 37.0 8.4 37 549-592 247-283 (294)
215 PF06785 UPF0242: Uncharacteri 70.1 37 0.00079 35.9 10.0 12 481-492 52-63 (401)
216 TIGR01010 BexC_CtrB_KpsE polys 70.1 98 0.0021 33.2 14.2 56 543-598 242-305 (362)
217 PF11802 CENP-K: Centromere-as 69.9 53 0.0012 33.9 11.1 102 483-599 86-189 (268)
218 PF06810 Phage_GP20: Phage min 69.7 17 0.00036 34.6 7.1 47 549-595 19-68 (155)
219 PRK00409 recombination and DNA 69.6 33 0.00071 41.1 11.1 53 481-533 501-553 (782)
220 TIGR02338 gimC_beta prefoldin, 69.5 80 0.0017 27.9 11.9 22 572-593 82-103 (110)
221 KOG0239|consensus 69.5 62 0.0013 38.0 13.0 83 487-569 180-267 (670)
222 PF05622 HOOK: HOOK protein; 69.4 1.5 3.3E-05 51.7 0.0 95 503-599 325-419 (713)
223 PF12329 TMF_DNA_bd: TATA elem 69.4 22 0.00048 29.4 6.9 33 545-577 35-67 (74)
224 KOG4603|consensus 69.3 1.1E+02 0.0024 29.4 12.2 90 497-596 80-170 (201)
225 PRK10698 phage shock protein P 69.3 73 0.0016 32.0 12.0 38 486-523 35-72 (222)
226 PRK03947 prefoldin subunit alp 69.3 94 0.002 28.6 12.1 43 551-600 95-137 (140)
227 KOG3990|consensus 69.2 8.1 0.00018 39.0 5.0 36 543-578 225-260 (305)
228 KOG4403|consensus 69.0 18 0.00039 39.3 7.8 26 550-575 302-327 (575)
229 PF10146 zf-C4H2: Zinc finger- 69.0 58 0.0013 33.0 11.2 46 543-588 60-105 (230)
230 KOG0976|consensus 69.0 57 0.0012 38.4 12.1 22 543-564 141-162 (1265)
231 PF10168 Nup88: Nuclear pore c 68.7 86 0.0019 37.2 14.1 16 546-561 635-650 (717)
232 PRK00106 hypothetical protein; 68.6 38 0.00081 38.6 10.8 41 559-599 113-153 (535)
233 PF10174 Cast: RIM-binding pro 68.6 87 0.0019 37.4 14.1 54 549-602 113-166 (775)
234 TIGR03185 DNA_S_dndD DNA sulfu 68.4 53 0.0012 38.4 12.5 42 490-531 392-435 (650)
235 TIGR03752 conj_TIGR03752 integ 68.4 23 0.00051 39.3 8.7 22 491-512 61-82 (472)
236 KOG0978|consensus 68.2 44 0.00094 39.1 11.2 46 111-156 84-129 (698)
237 PRK12704 phosphodiesterase; Pr 68.1 33 0.00072 39.0 10.3 41 559-599 98-138 (520)
238 KOG4674|consensus 68.0 56 0.0012 42.2 12.8 47 550-596 724-770 (1822)
239 PF09304 Cortex-I_coil: Cortex 67.9 88 0.0019 27.7 13.0 44 486-529 13-56 (107)
240 TIGR01843 type_I_hlyD type I s 67.8 84 0.0018 34.0 13.3 25 558-582 204-228 (423)
241 COG4026 Uncharacterized protei 67.8 32 0.00069 34.3 8.6 55 543-597 149-203 (290)
242 PF05335 DUF745: Protein of un 67.7 1.2E+02 0.0027 29.7 12.8 85 506-595 91-175 (188)
243 PRK11281 hypothetical protein; 67.6 64 0.0014 40.1 13.2 118 485-602 124-251 (1113)
244 PRK14155 heat shock protein Gr 67.4 20 0.00044 35.7 7.4 44 543-586 13-56 (208)
245 COG5185 HEC1 Protein involved 67.4 28 0.0006 38.4 8.8 59 543-601 330-398 (622)
246 PRK14145 heat shock protein Gr 67.4 12 0.00026 36.8 5.8 41 542-582 44-84 (196)
247 PF12761 End3: Actin cytoskele 67.4 12 0.00025 36.8 5.5 39 545-583 98-140 (195)
248 PRK04778 septation ring format 67.3 72 0.0016 36.7 13.0 41 483-523 318-368 (569)
249 TIGR02680 conserved hypothetic 67.0 77 0.0017 40.5 14.2 54 548-601 338-391 (1353)
250 cd01175 IPT_COE IPT domain of 66.9 13 0.00029 31.3 5.0 54 183-243 3-57 (85)
251 PF06005 DUF904: Protein of un 66.9 32 0.0007 28.3 7.3 46 553-598 7-52 (72)
252 KOG2264|consensus 66.9 23 0.00051 39.8 8.3 47 548-594 105-151 (907)
253 PF07407 Seadorna_VP6: Seadorn 66.8 9.9 0.00021 39.8 5.2 48 543-590 39-88 (420)
254 PRK13553 fumarate reductase cy 66.7 41 0.00088 34.6 9.5 103 8-124 35-147 (258)
255 PF00170 bZIP_1: bZIP transcri 66.5 28 0.00062 27.5 6.8 20 572-591 41-60 (64)
256 PF06785 UPF0242: Uncharacteri 66.5 65 0.0014 34.1 11.0 44 543-587 141-185 (401)
257 KOG0972|consensus 66.4 29 0.00064 35.9 8.4 49 490-538 267-329 (384)
258 cd07653 F-BAR_CIP4-like The F- 66.1 1E+02 0.0022 31.2 12.6 37 549-585 160-196 (251)
259 KOG0980|consensus 66.1 95 0.002 37.1 13.3 27 570-596 416-442 (980)
260 TIGR03319 YmdA_YtgF conserved 65.8 45 0.00097 37.9 10.7 39 556-594 96-134 (514)
261 PF01920 Prefoldin_2: Prefoldi 65.6 16 0.00035 31.5 5.8 36 487-522 3-38 (106)
262 PF09730 BicD: Microtubule-ass 65.6 1.1E+02 0.0024 36.1 14.0 52 481-532 264-315 (717)
263 TIGR01005 eps_transp_fam exopo 65.6 88 0.0019 37.2 13.8 19 543-561 316-334 (754)
264 PF14931 IFT20: Intraflagellar 65.4 1.1E+02 0.0023 27.8 11.6 33 501-533 25-57 (120)
265 TIGR03017 EpsF chain length de 65.4 71 0.0015 35.2 12.2 109 480-599 252-370 (444)
266 PRK14139 heat shock protein Gr 65.0 14 0.00031 36.0 5.7 40 543-582 32-71 (185)
267 PF09755 DUF2046: Uncharacteri 65.0 55 0.0012 34.5 10.3 53 546-598 109-162 (310)
268 PF14197 Cep57_CLD_2: Centroso 65.0 25 0.00055 28.6 6.3 30 500-529 9-38 (69)
269 PF15188 CCDC-167: Coiled-coil 64.9 17 0.00037 30.9 5.4 27 570-596 42-68 (85)
270 KOG0243|consensus 64.9 37 0.00079 41.3 10.0 30 571-600 483-512 (1041)
271 PRK01156 chromosome segregatio 64.8 91 0.002 37.9 13.9 32 553-584 684-715 (895)
272 PRK00409 recombination and DNA 64.7 33 0.00072 41.0 9.9 41 486-526 513-553 (782)
273 COG1340 Uncharacterized archae 64.5 1.2E+02 0.0026 31.8 12.5 30 570-599 213-242 (294)
274 PF01486 K-box: K-box region; 64.3 96 0.0021 26.8 11.1 86 512-602 14-99 (100)
275 PRK14163 heat shock protein Gr 64.2 17 0.00037 36.3 6.2 40 543-582 40-79 (214)
276 PF09325 Vps5: Vps5 C terminal 64.1 49 0.0011 32.9 9.7 43 480-522 22-64 (236)
277 cd07627 BAR_Vps5p The Bin/Amph 64.0 1.1E+02 0.0025 30.3 12.3 43 480-522 2-44 (216)
278 KOG0804|consensus 63.8 56 0.0012 36.0 10.3 14 570-583 434-447 (493)
279 PRK05431 seryl-tRNA synthetase 63.5 33 0.00071 38.0 9.0 57 546-602 38-97 (425)
280 PF04728 LPP: Lipoprotein leuc 63.4 28 0.00062 27.2 5.9 43 546-588 6-48 (56)
281 PF09325 Vps5: Vps5 C terminal 63.2 1.3E+02 0.0027 29.9 12.6 85 492-591 117-201 (236)
282 cd07675 F-BAR_FNBP1L The F-BAR 63.0 1.8E+02 0.0039 29.9 13.5 48 546-593 158-206 (252)
283 PF04420 CHD5: CHD5-like prote 62.9 17 0.00037 34.6 5.8 20 583-602 71-90 (161)
284 PRK14151 heat shock protein Gr 62.9 25 0.00054 34.1 6.9 42 543-584 20-61 (176)
285 KOG4643|consensus 62.8 97 0.0021 37.5 12.7 88 501-588 420-526 (1195)
286 KOG1029|consensus 62.5 92 0.002 36.7 12.1 38 553-590 545-582 (1118)
287 PF07106 TBPIP: Tat binding pr 62.4 22 0.00048 33.9 6.5 62 497-568 73-134 (169)
288 PF12128 DUF3584: Protein of u 62.1 69 0.0015 40.4 12.4 26 575-600 356-381 (1201)
289 PLN02320 seryl-tRNA synthetase 62.0 35 0.00077 38.5 8.9 28 572-599 131-158 (502)
290 PF12795 MscS_porin: Mechanose 62.0 1.2E+02 0.0025 30.7 12.1 112 490-602 25-137 (240)
291 COG2433 Uncharacterized conser 61.9 60 0.0013 37.1 10.5 22 494-515 420-441 (652)
292 COG1422 Predicted membrane pro 61.8 33 0.00072 33.8 7.5 7 572-578 96-102 (201)
293 PF03904 DUF334: Domain of unk 61.8 1.8E+02 0.004 29.3 12.8 15 583-597 125-139 (230)
294 PF12325 TMF_TATA_bd: TATA ele 61.7 39 0.00084 30.7 7.5 22 570-591 67-88 (120)
295 COG1842 PspA Phage shock prote 61.6 1.3E+02 0.0027 30.5 12.0 37 486-522 35-71 (225)
296 PF07200 Mod_r: Modifier of ru 61.4 58 0.0012 30.3 9.1 40 548-587 53-92 (150)
297 PF10234 Cluap1: Clusterin-ass 61.2 1E+02 0.0022 31.9 11.3 27 543-569 190-216 (267)
298 PF04871 Uso1_p115_C: Uso1 / p 61.1 87 0.0019 29.0 9.9 9 583-591 82-90 (136)
299 PRK09343 prefoldin subunit bet 61.1 91 0.002 28.2 9.9 106 482-594 7-115 (121)
300 TIGR01000 bacteriocin_acc bact 61.0 76 0.0017 35.3 11.5 22 547-568 240-261 (457)
301 cd07647 F-BAR_PSTPIP The F-BAR 61.0 1.9E+02 0.0041 29.2 14.4 42 549-590 152-193 (239)
302 COG4768 Uncharacterized protei 60.9 25 0.00055 32.3 6.1 44 559-602 26-69 (139)
303 KOG4364|consensus 60.9 77 0.0017 36.6 11.0 28 556-583 306-333 (811)
304 PF05791 Bacillus_HBL: Bacillu 60.9 1.1E+02 0.0025 29.6 11.3 18 481-498 65-82 (184)
305 PF07361 Cytochrom_B562: Cytoc 60.8 1.2E+02 0.0025 26.7 12.2 18 580-597 84-101 (103)
306 cd07680 F-BAR_PACSIN1 The F-BA 60.4 1.3E+02 0.0029 31.0 12.1 46 547-592 165-210 (258)
307 KOG4360|consensus 60.4 53 0.0012 36.7 9.5 89 481-569 211-301 (596)
308 COG3524 KpsE Capsule polysacch 60.0 2E+02 0.0044 30.3 13.0 44 486-530 160-203 (372)
309 KOG1655|consensus 60.0 68 0.0015 31.5 9.1 24 579-602 127-150 (218)
310 PRK14143 heat shock protein Gr 59.9 19 0.00041 36.6 5.8 40 543-582 67-106 (238)
311 PRK14149 heat shock protein Gr 59.8 39 0.00085 33.2 7.7 40 543-582 36-75 (191)
312 KOG0978|consensus 59.8 1.2E+02 0.0025 35.8 12.6 44 486-529 465-508 (698)
313 KOG4001|consensus 59.4 86 0.0019 30.9 9.7 23 582-604 232-254 (259)
314 PRK14153 heat shock protein Gr 59.4 22 0.00048 35.0 6.0 40 544-583 34-73 (194)
315 PRK14144 heat shock protein Gr 59.2 29 0.00062 34.4 6.7 40 543-582 45-84 (199)
316 PRK02119 hypothetical protein; 59.2 57 0.0012 26.9 7.4 42 549-590 8-49 (73)
317 COG4026 Uncharacterized protei 59.0 29 0.00062 34.6 6.6 11 588-598 187-197 (290)
318 PRK14158 heat shock protein Gr 59.0 23 0.00051 34.8 6.0 40 543-582 40-79 (194)
319 COG3074 Uncharacterized protei 58.9 37 0.00081 27.6 6.0 17 574-590 49-65 (79)
320 PF07407 Seadorna_VP6: Seadorn 58.9 30 0.00064 36.4 6.9 58 543-600 32-91 (420)
321 PF10186 Atg14: UV radiation r 58.6 1.8E+02 0.004 29.8 13.2 28 490-517 21-48 (302)
322 TIGR03007 pepcterm_ChnLen poly 58.5 57 0.0012 36.6 10.0 66 504-580 169-234 (498)
323 PRK13729 conjugal transfer pil 58.5 11 0.00023 41.9 4.0 33 549-581 89-121 (475)
324 PRK14162 heat shock protein Gr 58.5 24 0.00053 34.7 6.1 40 543-582 39-78 (194)
325 KOG0288|consensus 58.4 1.1E+02 0.0023 33.6 11.1 40 491-530 29-68 (459)
326 KOG0239|consensus 58.3 1.3E+02 0.0027 35.5 12.8 115 486-602 172-286 (670)
327 cd07664 BAR_SNX2 The Bin/Amphi 58.3 85 0.0018 31.9 10.2 43 480-522 20-62 (234)
328 PRK05431 seryl-tRNA synthetase 58.2 34 0.00074 37.9 7.9 16 548-563 71-86 (425)
329 PRK14147 heat shock protein Gr 58.2 40 0.00086 32.6 7.4 39 544-582 19-57 (172)
330 cd07651 F-BAR_PombeCdc15_like 58.0 1.6E+02 0.0034 29.6 12.2 43 550-592 150-192 (236)
331 cd07651 F-BAR_PombeCdc15_like 57.9 2.1E+02 0.0046 28.7 14.5 30 559-588 152-181 (236)
332 PHA01750 hypothetical protein 57.9 58 0.0013 26.1 6.8 29 572-600 43-71 (75)
333 PRK14140 heat shock protein Gr 57.8 25 0.00054 34.5 6.0 40 543-582 37-76 (191)
334 PF10805 DUF2730: Protein of u 57.8 41 0.00088 29.7 6.9 19 572-590 80-98 (106)
335 COG4467 Regulator of replicati 57.8 42 0.00091 29.7 6.6 45 552-603 10-54 (114)
336 PF07136 DUF1385: Protein of u 57.6 34 0.00073 34.8 7.0 68 11-78 48-115 (236)
337 PF03148 Tektin: Tektin family 57.4 1.4E+02 0.003 32.6 12.4 67 502-569 232-298 (384)
338 PF10779 XhlA: Haemolysin XhlA 57.1 47 0.001 27.0 6.7 43 548-590 4-46 (71)
339 KOG3848|consensus 56.8 3.8 8.3E-05 44.1 0.2 30 277-306 317-348 (516)
340 PF14915 CCDC144C: CCDC144C pr 56.7 1.2E+02 0.0025 31.9 10.7 106 494-602 4-136 (305)
341 COG1382 GimC Prefoldin, chaper 56.7 97 0.0021 28.1 9.0 40 563-602 69-108 (119)
342 PRK01156 chromosome segregatio 56.7 1.5E+02 0.0032 36.1 13.7 10 211-220 23-32 (895)
343 KOG4643|consensus 56.6 1.7E+02 0.0037 35.6 13.2 50 553-602 505-554 (1195)
344 COG0497 RecN ATPase involved i 56.4 75 0.0016 36.3 10.2 96 499-602 265-373 (557)
345 PRK03947 prefoldin subunit alp 56.3 1E+02 0.0022 28.3 9.7 31 572-602 102-132 (140)
346 PF14197 Cep57_CLD_2: Centroso 56.0 61 0.0013 26.4 7.0 18 583-600 45-62 (69)
347 PF01025 GrpE: GrpE; InterPro 55.7 21 0.00045 33.8 5.1 43 541-583 9-51 (165)
348 PF06120 Phage_HK97_TLTM: Tail 55.7 48 0.001 34.9 8.0 26 508-533 39-64 (301)
349 PF15066 CAGE1: Cancer-associa 55.5 1.4E+02 0.0031 33.1 11.6 50 547-596 387-436 (527)
350 TIGR00634 recN DNA repair prot 55.3 2E+02 0.0042 33.1 13.8 49 549-601 328-376 (563)
351 PLN02678 seryl-tRNA synthetase 55.2 42 0.0009 37.5 7.9 9 551-559 79-87 (448)
352 PF12709 Kinetocho_Slk19: Cent 55.0 71 0.0015 27.3 7.4 23 579-601 50-72 (87)
353 PRK14161 heat shock protein Gr 55.0 44 0.00096 32.5 7.2 39 545-583 21-59 (178)
354 PF06637 PV-1: PV-1 protein (P 54.9 54 0.0012 35.3 8.2 30 573-602 351-380 (442)
355 PF06160 EzrA: Septation ring 54.9 1.6E+02 0.0036 33.8 13.0 119 481-599 277-407 (560)
356 PF00170 bZIP_1: bZIP transcri 54.8 50 0.0011 26.1 6.4 28 572-599 34-61 (64)
357 PF04136 Sec34: Sec34-like fam 54.3 48 0.001 31.5 7.2 55 548-602 19-73 (157)
358 PF13166 AAA_13: AAA domain 54.3 82 0.0018 37.0 10.8 11 98-108 70-84 (712)
359 PRK10869 recombination and rep 54.1 1.5E+02 0.0033 34.0 12.5 37 565-601 335-371 (553)
360 cd07623 BAR_SNX1_2 The Bin/Amp 53.9 1.8E+02 0.004 29.0 11.8 43 480-522 10-52 (224)
361 smart00806 AIP3 Actin interact 53.8 2.6E+02 0.0055 30.9 13.3 31 572-602 244-274 (426)
362 PHA03011 hypothetical protein; 53.6 23 0.00049 30.8 4.3 31 570-600 56-86 (120)
363 PF04977 DivIC: Septum formati 53.6 41 0.00088 27.4 5.9 56 551-607 18-73 (80)
364 smart00338 BRLZ basic region l 53.5 45 0.00097 26.4 5.9 18 573-590 42-59 (65)
365 KOG0982|consensus 53.2 1.3E+02 0.0029 33.0 10.8 54 543-596 311-364 (502)
366 PRK14156 heat shock protein Gr 52.5 41 0.00089 32.7 6.5 39 544-582 28-66 (177)
367 PF05377 FlaC_arch: Flagella a 52.4 92 0.002 24.3 7.0 43 553-595 3-45 (55)
368 TIGR02338 gimC_beta prefoldin, 52.4 1.7E+02 0.0036 25.9 11.7 38 553-590 70-107 (110)
369 cd07646 I-BAR_IMD_IRSp53 Inver 52.4 1.7E+02 0.0038 29.5 10.9 39 544-582 108-146 (232)
370 cd07648 F-BAR_FCHO The F-BAR ( 52.3 2.5E+02 0.0055 28.6 12.8 7 581-587 174-180 (261)
371 KOG2751|consensus 52.3 1.2E+02 0.0025 33.5 10.3 56 546-601 186-241 (447)
372 cd07596 BAR_SNX The Bin/Amphip 52.3 2.3E+02 0.0049 27.4 13.1 29 549-577 144-172 (218)
373 KOG3156|consensus 52.2 1.5E+02 0.0033 29.6 10.2 15 570-584 180-194 (220)
374 PF15397 DUF4618: Domain of un 52.2 2.9E+02 0.0062 28.5 13.0 52 545-596 83-138 (258)
375 PF15290 Syntaphilin: Golgi-lo 51.9 48 0.001 34.3 7.0 16 549-564 88-103 (305)
376 PF08826 DMPK_coil: DMPK coile 51.9 98 0.0021 24.7 7.3 22 577-598 38-59 (61)
377 smart00338 BRLZ basic region l 51.9 55 0.0012 25.9 6.2 31 570-600 32-62 (65)
378 PLN02320 seryl-tRNA synthetase 51.7 88 0.0019 35.4 9.8 17 548-564 135-151 (502)
379 cd07671 F-BAR_PSTPIP1 The F-BA 51.7 2.1E+02 0.0045 29.2 11.8 41 549-589 152-192 (242)
380 TIGR02449 conserved hypothetic 51.4 88 0.0019 25.3 7.0 32 571-602 21-52 (65)
381 PF13805 Pil1: Eisosome compon 51.2 2.4E+02 0.0052 29.3 12.1 106 481-592 95-209 (271)
382 PF04102 SlyX: SlyX; InterPro 51.2 83 0.0018 25.5 7.1 48 550-597 4-51 (69)
383 PF13600 DUF4140: N-terminal d 51.1 32 0.0007 29.9 5.1 36 548-583 68-103 (104)
384 PF14735 HAUS4: HAUS augmin-li 51.1 1.5E+02 0.0031 30.3 10.5 23 580-602 204-226 (238)
385 PF02183 HALZ: Homeobox associ 51.1 52 0.0011 24.5 5.4 31 572-602 13-43 (45)
386 PF06120 Phage_HK97_TLTM: Tail 50.9 2.5E+02 0.0055 29.6 12.4 35 497-531 75-109 (301)
387 PF10392 COG5: Golgi transport 50.7 48 0.001 30.4 6.4 50 545-594 35-95 (132)
388 KOG3208|consensus 50.7 2.4E+02 0.0052 28.4 11.4 95 505-599 7-117 (231)
389 cd00632 Prefoldin_beta Prefold 50.4 1.4E+02 0.003 26.1 9.0 28 571-598 77-104 (105)
390 PRK14141 heat shock protein Gr 50.4 44 0.00096 33.3 6.5 37 546-582 34-70 (209)
391 KOG0163|consensus 50.4 86 0.0019 36.8 9.3 44 483-526 841-884 (1259)
392 PF09728 Taxilin: Myosin-like 50.2 1.4E+02 0.0031 31.6 10.7 42 555-596 242-283 (309)
393 PF06008 Laminin_I: Laminin Do 50.2 2.1E+02 0.0046 29.2 11.9 45 480-526 121-165 (264)
394 COG4942 Membrane-bound metallo 50.0 2.6E+02 0.0056 30.9 12.7 19 584-602 198-216 (420)
395 cd07673 F-BAR_FCHO2 The F-BAR 49.7 2.5E+02 0.0054 29.0 12.2 33 491-523 69-101 (269)
396 PF03961 DUF342: Protein of un 49.7 47 0.001 37.0 7.4 30 573-602 377-406 (451)
397 PF09403 FadA: Adhesion protei 49.5 1.1E+02 0.0025 27.9 8.5 22 572-593 83-104 (126)
398 PF05278 PEARLI-4: Arabidopsis 49.5 2.2E+02 0.0047 29.6 11.4 56 546-601 203-258 (269)
399 PF15397 DUF4618: Domain of un 49.4 1.9E+02 0.004 29.9 10.9 17 516-532 37-53 (258)
400 COG3206 GumC Uncharacterized p 49.4 1.3E+02 0.0028 33.5 10.9 51 547-601 353-403 (458)
401 KOG4052|consensus 49.4 19 0.00042 34.1 3.5 23 571-593 145-167 (190)
402 PF05615 THOC7: Tho complex su 49.4 2.1E+02 0.0046 26.2 11.1 38 564-602 88-125 (139)
403 KOG0612|consensus 49.3 86 0.0019 38.8 9.6 17 185-201 200-216 (1317)
404 PF10458 Val_tRNA-synt_C: Valy 48.9 46 0.001 26.6 5.3 55 543-597 4-65 (66)
405 PF05597 Phasin: Poly(hydroxya 48.9 1E+02 0.0022 28.4 8.2 31 502-532 24-54 (132)
406 COG0216 PrfA Protein chain rel 48.8 63 0.0014 34.5 7.5 15 488-502 32-46 (363)
407 PRK14157 heat shock protein Gr 48.7 45 0.00097 33.7 6.2 37 547-583 81-117 (227)
408 PF05103 DivIVA: DivIVA protei 48.7 14 0.0003 33.4 2.5 48 486-533 22-69 (131)
409 PF05667 DUF812: Protein of un 48.7 55 0.0012 37.9 7.8 54 548-601 326-379 (594)
410 PF10224 DUF2205: Predicted co 48.6 1.2E+02 0.0026 25.5 7.8 28 572-599 31-58 (80)
411 COG4726 PilX Tfp pilus assembl 48.6 26 0.00057 34.2 4.4 52 95-151 7-62 (196)
412 COG0576 GrpE Molecular chapero 48.5 44 0.00096 32.9 6.1 33 549-581 42-74 (193)
413 smart00340 HALZ homeobox assoc 48.5 39 0.00085 24.7 4.1 31 570-600 4-34 (44)
414 PF05546 She9_MDM33: She9 / Md 48.5 57 0.0012 32.4 6.8 50 543-592 32-81 (207)
415 PF06295 DUF1043: Protein of u 48.2 70 0.0015 29.2 7.0 50 547-596 29-79 (128)
416 cd07658 F-BAR_NOSTRIN The F-BA 48.1 2.1E+02 0.0046 29.0 11.2 55 547-601 92-146 (239)
417 cd00102 IPT Immunoglobulin-lik 47.9 1.5E+02 0.0032 24.2 8.6 57 182-242 2-59 (89)
418 cd00890 Prefoldin Prefoldin is 47.8 1.3E+02 0.0028 26.8 8.8 28 573-600 96-123 (129)
419 PF05769 DUF837: Protein of un 47.8 2.6E+02 0.0057 27.2 11.3 83 484-566 5-93 (181)
420 PF10205 KLRAQ: Predicted coil 47.7 1E+02 0.0023 27.1 7.5 41 562-602 31-71 (102)
421 KOG0963|consensus 47.6 1.7E+02 0.0038 33.6 11.2 39 491-529 123-161 (629)
422 PRK15396 murein lipoprotein; P 47.6 49 0.0011 27.7 5.3 36 545-587 27-62 (78)
423 PF04799 Fzo_mitofusin: fzo-li 47.5 45 0.00098 32.1 5.8 44 547-594 124-167 (171)
424 PF05262 Borrelia_P83: Borreli 47.4 1.2E+02 0.0026 34.2 10.0 16 554-569 278-293 (489)
425 COG0172 SerS Seryl-tRNA synthe 47.4 46 0.001 36.8 6.6 17 548-564 73-89 (429)
426 PF12795 MscS_porin: Mechanose 47.3 3.1E+02 0.0067 27.7 12.3 120 483-602 79-209 (240)
427 PLN02678 seryl-tRNA synthetase 47.1 45 0.00097 37.2 6.6 24 575-598 82-105 (448)
428 PRK04406 hypothetical protein; 47.1 1.2E+02 0.0027 25.0 7.6 16 549-564 10-25 (75)
429 TIGR03017 EpsF chain length de 47.0 3.8E+02 0.0082 29.4 14.1 20 542-561 281-300 (444)
430 KOG3848|consensus 46.8 7 0.00015 42.1 0.3 30 438-468 318-347 (516)
431 TIGR00414 serS seryl-tRNA synt 46.8 74 0.0016 35.2 8.2 13 549-561 75-87 (418)
432 PF10481 CENP-F_N: Cenp-F N-te 46.5 1.6E+02 0.0034 30.5 9.7 24 578-601 162-185 (307)
433 KOG0249|consensus 46.5 89 0.0019 36.5 8.7 42 543-584 216-257 (916)
434 KOG0981|consensus 46.5 29 0.00063 39.2 4.9 62 542-603 635-701 (759)
435 KOG3156|consensus 46.3 61 0.0013 32.2 6.5 35 551-591 102-136 (220)
436 PF14523 Syntaxin_2: Syntaxin- 46.2 1.9E+02 0.0041 24.7 9.6 25 574-598 74-98 (102)
437 PF06008 Laminin_I: Laminin Do 46.2 3.3E+02 0.0072 27.8 12.6 34 489-522 45-78 (264)
438 PF07464 ApoLp-III: Apolipopho 46.0 1.1E+02 0.0025 29.0 8.2 21 585-605 132-152 (155)
439 KOG0240|consensus 45.9 2E+02 0.0044 32.8 11.2 44 515-563 412-455 (607)
440 PF04350 PilO: Pilus assembly 45.8 24 0.00051 32.3 3.6 17 572-588 24-40 (144)
441 cd07656 F-BAR_srGAP The F-BAR 45.7 2.1E+02 0.0045 29.2 10.7 27 548-574 181-207 (241)
442 PRK14146 heat shock protein Gr 45.6 49 0.0011 33.2 6.0 38 545-582 56-93 (215)
443 TIGR00414 serS seryl-tRNA synt 45.6 1E+02 0.0022 34.1 9.1 27 573-599 71-97 (418)
444 TIGR02209 ftsL_broad cell divi 45.6 42 0.00091 27.9 4.8 14 571-584 45-58 (85)
445 PF12777 MT: Microtubule-bindi 45.3 43 0.00092 36.0 6.0 21 580-600 286-306 (344)
446 PF12072 DUF3552: Domain of un 45.1 3E+02 0.0065 27.1 11.5 28 566-593 108-135 (201)
447 PRK14153 heat shock protein Gr 45.1 35 0.00075 33.6 4.8 35 568-602 37-71 (194)
448 PF11853 DUF3373: Protein of u 45.1 14 0.0003 41.3 2.2 17 551-567 32-48 (489)
449 KOG1103|consensus 45.0 2.4E+02 0.0053 30.1 11.0 33 549-581 145-177 (561)
450 PRK11519 tyrosine kinase; Prov 45.0 1.1E+02 0.0025 36.2 10.0 35 494-528 265-299 (719)
451 PF05377 FlaC_arch: Flagella a 44.9 71 0.0015 24.9 5.4 28 563-590 6-33 (55)
452 cd07647 F-BAR_PSTPIP The F-BAR 44.7 3.4E+02 0.0075 27.3 13.6 24 486-509 57-80 (239)
453 PF13166 AAA_13: AAA domain 44.6 1.6E+02 0.0035 34.6 11.3 27 553-579 427-453 (712)
454 PF02841 GBP_C: Guanylate-bind 44.6 3.5E+02 0.0076 28.2 12.6 18 581-598 280-297 (297)
455 KOG2685|consensus 44.5 75 0.0016 34.7 7.5 67 502-569 259-325 (421)
456 PF12072 DUF3552: Domain of un 44.5 3.2E+02 0.0069 26.9 12.7 32 566-597 101-132 (201)
457 PF00769 ERM: Ezrin/radixin/mo 44.5 1.9E+02 0.0041 29.5 10.2 104 494-602 10-113 (246)
458 PF04102 SlyX: SlyX; InterPro 44.2 76 0.0016 25.7 5.9 48 555-602 2-49 (69)
459 KOG3647|consensus 44.2 1.4E+02 0.003 30.8 8.8 23 546-568 136-158 (338)
460 KOG2391|consensus 44.1 72 0.0016 34.0 7.1 10 487-496 207-216 (365)
461 TIGR00570 cdk7 CDK-activating 44.1 1.5E+02 0.0032 31.4 9.5 77 442-533 27-109 (309)
462 COG4913 Uncharacterized protei 44.0 2.6E+02 0.0056 33.1 11.8 103 489-594 616-721 (1104)
463 smart00435 TOPEUc DNA Topoisom 43.8 1.4E+02 0.003 32.6 9.4 16 587-602 345-360 (391)
464 PF12709 Kinetocho_Slk19: Cent 43.8 1.7E+02 0.0037 25.1 8.0 25 572-596 57-81 (87)
465 PF03978 Borrelia_REV: Borreli 43.6 1.4E+02 0.0031 28.2 8.2 40 487-535 26-65 (160)
466 PF09738 DUF2051: Double stran 43.6 2E+02 0.0043 30.4 10.4 48 551-598 113-160 (302)
467 PF03961 DUF342: Protein of un 43.6 62 0.0013 36.0 7.1 6 159-164 71-76 (451)
468 KOG1292|consensus 43.4 15 0.00032 40.8 2.1 25 97-121 403-427 (510)
469 TIGR00293 prefoldin, archaeal 43.4 66 0.0014 28.9 6.1 31 572-602 94-124 (126)
470 PRK08476 F0F1 ATP synthase sub 43.4 2.1E+02 0.0045 26.5 9.5 18 506-523 51-68 (141)
471 PF08016 PKD_channel: Polycyst 43.3 2.5E+02 0.0054 30.8 11.9 37 100-138 294-330 (425)
472 PF03962 Mnd1: Mnd1 family; I 43.3 3.3E+02 0.0071 26.6 11.5 33 483-515 63-95 (188)
473 PRK13454 F0F1 ATP synthase sub 43.3 1.6E+02 0.0035 28.5 9.1 13 568-580 131-143 (181)
474 PRK06569 F0F1 ATP synthase sub 43.2 3E+02 0.0065 26.2 12.1 21 570-590 109-129 (155)
475 PF04859 DUF641: Plant protein 43.1 2.7E+02 0.0059 25.7 10.3 19 565-583 102-120 (131)
476 KOG0288|consensus 43.1 1.9E+02 0.0041 31.7 10.1 24 488-511 12-35 (459)
477 KOG4460|consensus 42.9 1.6E+02 0.0035 33.4 9.8 49 554-602 592-640 (741)
478 KOG0979|consensus 42.8 2.2E+02 0.0047 34.8 11.4 48 546-593 251-298 (1072)
479 PF05911 DUF869: Plant protein 42.7 2.7E+02 0.0058 33.4 12.3 37 566-602 129-165 (769)
480 PF14362 DUF4407: Domain of un 42.7 2.3E+02 0.0049 29.6 10.9 13 587-599 241-253 (301)
481 smart00150 SPEC Spectrin repea 42.7 1.9E+02 0.0041 23.7 9.6 29 571-599 70-98 (101)
482 PF07889 DUF1664: Protein of u 42.7 2.7E+02 0.0059 25.5 11.4 12 503-514 43-54 (126)
483 PRK02119 hypothetical protein; 42.5 1.2E+02 0.0027 24.9 6.9 46 554-599 6-51 (73)
484 PF04949 Transcrip_act: Transc 42.5 2.6E+02 0.0055 26.4 9.5 93 502-599 48-140 (159)
485 PF15294 Leu_zip: Leucine zipp 42.4 4.2E+02 0.0091 27.7 13.4 126 484-609 39-184 (278)
486 PF11221 Med21: Subunit 21 of 42.3 1.9E+02 0.0041 26.9 9.1 81 504-589 63-143 (144)
487 KOG2927|consensus 42.3 44 0.00095 35.7 5.2 55 2-73 187-243 (372)
488 PRK13922 rod shape-determining 42.3 35 0.00076 35.2 4.7 42 543-602 69-110 (276)
489 PF10018 Med4: Vitamin-D-recep 42.0 46 0.00099 32.5 5.1 65 517-581 2-67 (188)
490 PRK06568 F0F1 ATP synthase sub 42.0 1.5E+02 0.0032 28.2 8.3 87 494-580 29-116 (154)
491 PF06273 eIF-4B: Plant specifi 42.0 48 0.0011 36.9 5.7 72 528-607 350-422 (492)
492 PRK09174 F0F1 ATP synthase sub 41.9 2.7E+02 0.0059 27.6 10.6 104 484-587 75-180 (204)
493 PRK09841 cryptic autophosphory 41.8 1.1E+02 0.0025 36.2 9.3 112 486-600 257-368 (726)
494 PTZ00446 vacuolar sorting prot 41.6 3.4E+02 0.0073 26.7 11.0 118 485-603 23-148 (191)
495 PF15070 GOLGA2L5: Putative go 41.6 2E+02 0.0042 33.6 10.8 114 489-602 125-254 (617)
496 PF15233 SYCE1: Synaptonemal c 41.5 1.1E+02 0.0025 28.0 7.0 55 545-599 1-55 (134)
497 PF05587 Anth_Ig: Anthrax rece 41.4 8.9 0.00019 33.9 0.0 101 333-442 3-105 (105)
498 KOG4593|consensus 41.3 3.8E+02 0.0082 31.5 12.7 100 481-602 428-527 (716)
499 KOG1103|consensus 41.2 2.8E+02 0.0061 29.7 10.8 104 499-602 142-297 (561)
500 KOG1265|consensus 41.2 1.9E+02 0.0042 34.7 10.5 108 497-609 1060-1170(1189)
No 1
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=4.6e-37 Score=300.75 Aligned_cols=156 Identities=45% Similarity=0.577 Sum_probs=137.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCchhHHHHhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCcccc-
Q psy114 1 MSLQWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVK- 79 (609)
Q Consensus 1 Msl~~~lv~~~L~~E~~~~~lL~lP~p~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~~~- 79 (609)
|||||++||++||+||+++++|++|+|+++| +++|++........+++++++++++++++||+||+++|+||+.+...
T Consensus 1 Msl~~~lvf~~L~~Ei~~~~lL~lPlp~~~R-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~ 79 (192)
T PF05529_consen 1 MSLQWSLVFGLLYAEIAVLLLLVLPLPSPIR-RKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEA 79 (192)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999 57877666656677788999999999999999999999999876532
Q ss_pred cccCCCCC-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy114 80 EEAHGHLD-AEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGK 157 (609)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~~~~~~~~~ 157 (609)
...+.+++ +++|++||+||||||+||+||+|||+|+|+|++++|+++..++++.++++||++++++.++++.++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~ 158 (192)
T PF05529_consen 80 KDDHPNPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKK 158 (192)
T ss_pred cccCCCccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 12233333 7889999999999999999999999999999999999999999999999999999999999886544443
No 2
>KOG1962|consensus
Probab=100.00 E-value=2.5e-32 Score=263.97 Aligned_cols=144 Identities=36% Similarity=0.573 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCchhHHHHhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCcccc-ccc
Q psy114 4 QWTLIATVLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEVK-EEA 82 (609)
Q Consensus 4 ~~~lv~~~L~~E~~~~~lL~lP~p~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~~~-~~~ 82 (609)
||++||++||+||+++++|+||+| +.||+++|+++...++..++..++.+++++++++|+|||+|+++|...+.. ...
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip-~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~ 79 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIP-PRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP 79 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence 799999999999999999999995 666889999999999999999999999999999999999999999776422 223
Q ss_pred CCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 83 HGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQA 149 (609)
Q Consensus 83 ~~~~~~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~ 149 (609)
..++....|++|+.||+|||+|||||+||||+||+|++++|++++.++++ |.++|+++.+.+.+++
T Consensus 80 ~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 80 TDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLEN 145 (216)
T ss_pred ccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhc
Confidence 35677888999999999999999999999999999999999999999997 5555555444444433
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2.9e-29 Score=231.73 Aligned_cols=154 Identities=23% Similarity=0.355 Sum_probs=129.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCchhHHHH--hhh-hhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy114 1 MSLQWTLIATVLYFEMAFMLLLILPILSTQRLH--KIL-KSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPE 77 (609)
Q Consensus 1 Msl~~~lv~~~L~~E~~~~~lL~lP~p~~~r~~--~~~-~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~ 77 (609)
||||+++||.+|.+||++|++|+||+|.++|+. +.+ .++. ..+...+++++++++++||+|||+|+++.+.+.
T Consensus 1 M~iy~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~----~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~ 76 (192)
T COG5374 1 MGIYYTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKV----YRGFKHILKITFIFILLLFIDSWKRVYRVSKEA 76 (192)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 999999999999999999999999999988742 223 2333 344566778899999999999999998887553
Q ss_pred cc-cccC-CCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy114 78 VK-EEAH-GHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIAQQANLL-------AQNEASMNQARQAAVAAQ 148 (609)
Q Consensus 78 ~~-~~~~-~~~~~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~~~~~l~-------~~~~a~~kqa~~a~~~a~ 148 (609)
.. .+.. ....++.++++|+||+||||||+||+|||++++.|++.++.++.+++ +.+||...++|.+.+-|+
T Consensus 77 nl~~a~~n~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~ 156 (192)
T COG5374 77 NLYSASINNYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQ 156 (192)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhh
Confidence 21 2222 23678889999999999999999999999999999999999999999 889999999999999898
Q ss_pred HhhcCCCCcc
Q psy114 149 ALLDGPRGKW 158 (609)
Q Consensus 149 ~~~~~~~~~~ 158 (609)
.++++.+++-
T Consensus 157 ~~le~Lqkn~ 166 (192)
T COG5374 157 ILLEGLQKNQ 166 (192)
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 4
>KOG1962|consensus
Probab=99.67 E-value=3e-16 Score=152.44 Aligned_cols=109 Identities=27% Similarity=0.434 Sum_probs=92.5
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
-+.-+.+|+.++|++|+.++++ +++|++++.+++.++..+. .++++..++++.++|++|++++
T Consensus 108 FL~lvI~R~~~ll~~l~~l~~~---------------~~~~~~~~~lk~~~~~~~~--~~~~~~~~~~~~~kL~~el~~~ 170 (216)
T KOG1962|consen 108 FLSLVIRRLHTLLRELATLRAN---------------EKAMKENEALKKQLENSSK--LEEENDKLKADLEKLETELEKK 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHhhhcccc--hhhhHHHHHhhHHHHHHHHHHH
Confidence 3557789999999999999987 3455566666665554433 4577788899999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 608 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~kk 608 (609)
+++|++++++++||+||+|++++|||||+|||++||++++.+++|+
T Consensus 171 ~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~k~ 216 (216)
T KOG1962|consen 171 QKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGKKK 216 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999777664
No 5
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=98.97 E-value=1.9e-09 Score=105.75 Aligned_cols=80 Identities=35% Similarity=0.474 Sum_probs=65.9
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
+.-+..|+.++|+++..+++..+++++|+++++++++++.+ ++.+++.+|+++||+||++
T Consensus 113 L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~------------------~~~~~~~~ei~~lk~el~~-- 172 (192)
T PF05529_consen 113 LSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLK------------------EENKKLSEEIEKLKKELEK-- 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh------------------hhhhhhHHHHHHHHHHHHH--
Confidence 34567888999999999999999999999999999988721 2234456677777777766
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 564 EELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 564 ~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
+++|+++||||+|||++|||
T Consensus 173 -----~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 173 -----KEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred -----HHHHHHHHHHHHHHHHhhcC
Confidence 45699999999999999998
No 6
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=97.82 E-value=5e-06 Score=63.65 Aligned_cols=37 Identities=38% Similarity=1.129 Sum_probs=31.3
Q ss_pred ccccCccccccccCCCC-CccCCCCCccccCCCCCCCCC
Q psy114 278 DCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRND 315 (609)
Q Consensus 278 dCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~ 315 (609)
+|+.|++|.+|++++|| |+||...++|+.. .++|...
T Consensus 1 ~C~~~~sC~~Cl~~~dp~CgWc~~~~~C~~~-~~~c~~~ 38 (51)
T PF01437_consen 1 NCSQYTSCSSCLSSRDPYCGWCSSENRCVSG-SGQCPRS 38 (51)
T ss_dssp -GGGGSSHHHHHHSTCTTEEEETTTTEEEEC-CGGSSST
T ss_pred CCcCCCcHHHHHcCCCcCccccCCCCcccCC-cccCCcc
Confidence 58999999999999997 9999999999985 2367753
No 7
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=97.21 E-value=0.00016 Score=54.04 Aligned_cols=34 Identities=41% Similarity=1.198 Sum_probs=29.3
Q ss_pred cccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114 279 CNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN 314 (609)
Q Consensus 279 Cs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~ 314 (609)
|+.+++|.+|+.++|| |+||+..++|++. ..|..
T Consensus 1 C~~~~sC~~C~~~~~~~C~Wc~~~~~C~~~--~~c~~ 35 (46)
T smart00423 1 CSKYTSCSECLLARDPYCAWCSSQGRCTSG--ERCDS 35 (46)
T ss_pred CCCCCcHHHHHcCCCCCCCccCCCCcccCc--cccCc
Confidence 6778899999999999 9999999999983 45753
No 8
>KOG3610|consensus
Probab=97.06 E-value=0.00017 Score=85.10 Aligned_cols=56 Identities=29% Similarity=0.593 Sum_probs=47.4
Q ss_pred eeeeeccccCcccCccccCCCCcccccCCCCCccccccCCC---CCCCCCChhhHHHhhhh
Q psy114 434 VNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD---KGLEGDSDEIKRLKEKL 491 (609)
Q Consensus 434 v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~---~~~~~~~~~I~~i~~~l 491 (609)
|.||+|..++.+|+.|+++++.|.|+||..++ ..++.|+ ++..|++|.|+.+.+--
T Consensus 1 v~ly~c~~~~~~c~~cl~~~p~~~C~wc~~~~--~~~~~C~~~~v~~~c~~P~i~~~~P~~ 59 (1025)
T KOG3610|consen 1 VELYSCLRLAKDCALCLPASPVLLCGWCIRGS--KEAHACSEMNVNCVCPLPSITALSPLN 59 (1025)
T ss_pred CeeeeccccccchhhhhccCccceeEEEeCCc--hhhhhcccccCceecCCCcccceeecc
Confidence 47999999999999999999999999998875 6667785 67788999988776543
No 9
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.23 E-value=0.086 Score=51.06 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=58.0
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHH---HHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYD---RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKL 559 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak---~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l 559 (609)
...++++.+.++--.-|.+....+++++|+.|++.+-. -+=+|.++++..+.. .+++..+|.++...+++|-
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~-----lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKS-----LEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34566666666666667777778888888888776643 336667777665422 2233333333333333333
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 560 SKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 560 ~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.....++.+-+.+-..+....+++.+.|..|..+...||.|+
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 333333333223333333334444444444444555555544
No 10
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=95.43 E-value=0.0043 Score=47.37 Aligned_cols=35 Identities=37% Similarity=0.970 Sum_probs=28.5
Q ss_pred eccccCcccCccccCCCCcccccCCCCCcccccc-CCC
Q psy114 438 KCRDLANNCGLCLALPEKYGCGWCESSKRCEIFE-QCD 474 (609)
Q Consensus 438 nCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~-~C~ 474 (609)
+|+. +.+|+.|++++.. .|+||...++|+... .|.
T Consensus 1 ~C~~-~~sC~~Cl~~~dp-~CgWc~~~~~C~~~~~~c~ 36 (51)
T PF01437_consen 1 NCSQ-YTSCSSCLSSRDP-YCGWCSSENRCVSGSGQCP 36 (51)
T ss_dssp -GGG-GSSHHHHHHSTCT-TEEEETTTTEEEECCGGSS
T ss_pred CCcC-CCcHHHHHcCCCc-CccccCCCCcccCCcccCC
Confidence 4764 5899999977644 899999999999987 786
No 11
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.36 E-value=0.14 Score=49.64 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
..|=..-..+...+..++...+.+.++..++.++...|+..+... ...-...+.+.+|++.||..++...+.-.+.-+
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~--Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL--QQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444556666666777777777777777777765544221 011123344555555555555555443333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
...-+.+....|..+..-|-+|+.+++
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333333333444444444333
No 12
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.32 E-value=0.034 Score=41.34 Aligned_cols=34 Identities=41% Similarity=0.488 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
-|.|.++||.+-+.|..+||+|..|+++|+.++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999998876
No 13
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.26 E-value=0.16 Score=52.88 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=30.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++..++++++++.+++.....+.+.....+...++.+.+..+.++..+++..++.++.
T Consensus 86 i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 86 IEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444433333445555666666666666666555555443
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.14 E-value=0.44 Score=50.74 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
.++..|....+.+.+..+.+......+.+....++++-..++....+. ...+.++.+.+++++.+++.+++.+++++..
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~-~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI-ESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444433221 1112344444555555555555544444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+.+++.++...+.+..+=..+.++.++++.
T Consensus 235 l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 235 LQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.32 E-value=0.95 Score=48.17 Aligned_cols=111 Identities=16% Similarity=0.319 Sum_probs=89.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
..|...+..+..+.+.+.++.+-+++...++.+..+.|+..+..-.... .+-......++++++.+|++.+.++...++
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~-~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV-EEIESCDQEELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888888888888888888888888877654422111 123456788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+++.+++|-+.+..+-+.+.++.++++.+++.
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888764
No 16
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.03 E-value=1.5 Score=40.37 Aligned_cols=58 Identities=14% Similarity=0.266 Sum_probs=39.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKE----KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~----~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...+..++..|+.+......+|..+ +.....|+++.+.+.+.+|.|.+.|.=|.+|++
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555444 334557888888899999999888888888876
No 17
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=93.98 E-value=0.03 Score=41.68 Aligned_cols=30 Identities=40% Similarity=1.004 Sum_probs=24.5
Q ss_pred cccCccccCCCCcccccCCCCCccccccCCC
Q psy114 444 NNCGLCLALPEKYGCGWCESSKRCEIFEQCD 474 (609)
Q Consensus 444 ~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~ 474 (609)
.+|+.|+.+... .|+||..++.|+....|.
T Consensus 5 ~sC~~C~~~~~~-~C~Wc~~~~~C~~~~~c~ 34 (46)
T smart00423 5 TSCSECLLARDP-YCAWCSSQGRCTSGERCD 34 (46)
T ss_pred CcHHHHHcCCCC-CCCccCCCCcccCccccC
Confidence 589999766554 699999888999987774
No 18
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.47 E-value=1.2 Score=44.14 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~ 565 (609)
.|...-+.||..|+ ...+.++++.+...+.......||..+...+..... +.++........++-|..|+.....
T Consensus 20 dIT~~NL~lIksLK---eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~--e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 20 DITLNNLELIKSLK---EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEE--EVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554443 333445555555555555555566555554432110 0111111112222333333333333
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
++..+.++..|+.+.+.|...|+.+-.|...|.
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444
No 19
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.37 E-value=0.42 Score=52.51 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 575 ALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 575 ~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+|.+.|..|-.++....+.|+.+++
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555665553
No 20
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.25 E-value=0.29 Score=48.15 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=41.5
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
.+......+.+|..+|+.+....+.+..|.-.++..-.++-.+.......+ .....+...+..++..|+.+++++
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l-----~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL-----AELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp ----------------------------------------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777776666555555444433322222221 112344555666666777777777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+.+.....|+.+|.-|...+....++|-+||.+|=.
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666777777777777777777777777777643
No 21
>PRK09039 hypothetical protein; Validated
Probab=93.12 E-value=0.89 Score=48.77 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=36.2
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.+...|+.+|+.|++++...+.+|..+|......+.|.+.|..+-+..+.+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777776677777777777777776643
No 22
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.03 E-value=2.9 Score=38.95 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=51.7
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~ 565 (609)
.+..++.+|=++|.....+.+.+.++|+++.+....+-++-..+...+. ....+...++.|.+.|.+++.++...
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~-----~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN-----QLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999999998888887666665544432 12234444455555555555555444
Q ss_pred HHH
Q psy114 566 LKK 568 (609)
Q Consensus 566 l~~ 568 (609)
+..
T Consensus 96 v~e 98 (140)
T PF10473_consen 96 VSE 98 (140)
T ss_pred HHH
Confidence 333
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.94 E-value=1.8 Score=42.18 Aligned_cols=108 Identities=16% Similarity=0.354 Sum_probs=56.9
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEEL 566 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l 566 (609)
.+..+.....++..+....+.+.+............-++........ +...+....+....+++.+++.+..+++
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 153 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELL-----KSVEERLDSLDESIKELEKEIRELQKEL 153 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555444444444333332222221110 1112334455555666666666666566
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 567 KKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 567 ~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+..+.+++.++.+.+.+..+|+++.+..++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 154 QDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777777666665554
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.85 E-value=1.4 Score=51.50 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=34.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
...+..|+++|..||+.+++++...|.|+..|+++...-.+|-+-|+...+.+|
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq 600 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ 600 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 456667788888888888888888888887777761113344454444444443
No 25
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.76 E-value=1.5 Score=46.60 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
..|-+....++.+..+++.|+..|+.-+.||+.+|..+..-|.+++.+|..+
T Consensus 115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777777777777777777777777777776666666665444
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.59 E-value=1.6 Score=46.19 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=60.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
..|...+..+..+.+.+.++.+-+++..-.+.+..+.|+..+..-..-.+ +-+.-...++.++|++|++...++....+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~-e~~~~d~~eL~~lk~~l~~~~~ei~~~~~ 225 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED-ELEDCDPTELDRAKEKLKKLLQEIMIKVK 225 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888889999998888888888888887765443211110 10122234444444444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+++.++.|.+.+...-....++.++++.++
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 27
>PRK09039 hypothetical protein; Validated
Probab=92.53 E-value=2.2 Score=45.75 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
|..|+.|++.+++.+...+..+++.+.|-......++.|..+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444333
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.26 E-value=2.2 Score=48.04 Aligned_cols=91 Identities=13% Similarity=0.219 Sum_probs=45.8
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHH
Q psy114 488 KEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELK 567 (609)
Q Consensus 488 ~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~ 567 (609)
......|......+....+.++++.+.+..+-....++.+.|+...++ .....+.+..|.+.|+.++++..+.+.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke-----l~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE-----LTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555443211 112233445555555555555555555
Q ss_pred HhhhhHHHHHHHHHHH
Q psy114 568 KEKTNSAALKNQADSV 583 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l 583 (609)
..+.|+.+|+.+....
T Consensus 224 ~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 224 ELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555666665555333
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.12 E-value=2.1 Score=43.40 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.++..+|++...|..|-.+|.++..+|++++.
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666665543
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.85 E-value=3.9 Score=37.06 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=42.9
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~ 532 (609)
...+..++..|.-+=++++.++...+++.++=+.+++.-=+++.+++.++..
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366788888888888899999999999999999999999999888776444
No 31
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.71 E-value=0.35 Score=51.17 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=23.0
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
|++.+.+|+++|++|.++.++++++.+.+.+.++.+-+..-++|+.+
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~ 104 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL 104 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555544444444444433
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.54 E-value=5.3 Score=39.56 Aligned_cols=99 Identities=23% Similarity=0.353 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLL-------KEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~-------~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
-|.+|-.+.+.+++..+...+........-+++. ++.+.|++.+.. -.+++..+..+|..++..
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~---------y~kdK~~L~~~k~rl~~~ 98 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN---------YEKDKQSLQNLKARLKEL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655554 444445444422 234456677778888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
+++++..+-+-+.|.-+.+.+.+|.|.|.+.....
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888887666554
No 33
>KOG0971|consensus
Probab=91.31 E-value=3 Score=48.88 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 558 KLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 558 ~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...++.|++++...|++.|+.|.|.|+++.|.+-.....||.|++
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677778889999999999999999999888888998877
No 34
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=91.29 E-value=0.84 Score=43.28 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=39.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEK---TNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~---~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
...++.+.|+.+|++.++.++.-+ .|.+.|++|.+.|..+|+...++|+.
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888766644 59999999999999999977666665
No 35
>KOG0996|consensus
Probab=91.27 E-value=0.96 Score=54.31 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=40.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+++.+++++|+.++++..-+++++..++.-..+-...+.++++.+.+|...|...+.
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555556666666666666666666777777777777777777777777766665544
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.19 E-value=5.5 Score=37.31 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=50.1
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
+..+..-|-.||.+...-+...|.+..+.......-.++-...+.|+..++.. +.+......+...|+++++...
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~-----ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEEL-----ERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666665555544444444444444444433221 1112222333333444444444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Q psy114 564 EELKKEKTNSAALKNQADSVGKEYD----RLLKEHEKVQKVV 601 (609)
Q Consensus 564 ~~l~~~~~~~~~lkkQ~~~l~~eyd----rl~~e~~~l~~~~ 601 (609)
..++....|+.-+|....+...-|. |---|+++|++++
T Consensus 108 ~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 108 AKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444333332 2233445555544
No 37
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.16 E-value=3.2 Score=40.67 Aligned_cols=103 Identities=10% Similarity=0.129 Sum_probs=50.6
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGK-EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKL 559 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~-~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l 559 (609)
.--+-.+..++.. ..+|.+++.+|... +.++.++.. ..+.. ...+++.+..+.+.|+.++
T Consensus 83 GlLL~rvrde~~~----------~l~~y~~l~~s~~~f~~rk~l~~e-~~~~~--------l~~~i~~L~~e~~~L~~~~ 143 (189)
T PF10211_consen 83 GLLLLRVRDEYRM----------TLDAYQTLYESSIAFGMRKALQAE-QGKQE--------LEEEIEELEEEKEELEKQV 143 (189)
T ss_pred hHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 4445556666553 34455555555444 334444332 11111 1233444555555555555
Q ss_pred HHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 560 SKTEEELKKEKTNSA-ALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 560 ~~~~~~l~~~~~~~~-~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+........++..+ .+....+....|+|-|...+++|..+++
T Consensus 144 ~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 144 QELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544443333332222 2333344566777777777777777664
No 38
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.65 E-value=4.2 Score=42.66 Aligned_cols=107 Identities=22% Similarity=0.351 Sum_probs=67.2
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLS 560 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~ 560 (609)
.+++..+++++..|-.+...++.-..-+++.+....+....+|.+-- ++......++..|..||+
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv---------------~QL~~An~qia~LseELa 223 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV---------------KQLSEANQQIASLSEELA 223 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH---------------HHhhhcchhHHHHHHHHH
Confidence 45788999999888777777777777777666666666666664431 112223445555666666
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 561 KTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 561 ~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.++....+.++..|..|.-.|.+..-.+.-|+.+|+..+.
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666666666666666666666666666666666666655544
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.64 E-value=2.5 Score=47.64 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=38.4
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~ 534 (609)
..++.++..|-.+|+.....++.++.+.+........+-++++.|+...+
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888888888888888888888887777777777766443
No 40
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=90.62 E-value=4.2 Score=35.64 Aligned_cols=69 Identities=26% Similarity=0.411 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 518 EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 518 ~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
++-|+-..+..||+++-+ ......+|+.+|+.++.+|.+.+.|++.|.=.-+.|.+....|.+|....
T Consensus 6 eYsKLraQ~~vLKKaVie------------EQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIE------------EQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666421 14556789999999999999999999988888888888888887777654
Q ss_pred H
Q psy114 598 Q 598 (609)
Q Consensus 598 ~ 598 (609)
.
T Consensus 74 ~ 74 (102)
T PF10205_consen 74 E 74 (102)
T ss_pred h
Confidence 3
No 41
>PRK11637 AmiB activator; Provisional
Probab=90.62 E-value=2.7 Score=46.46 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
+..+++++..++.+.++++.+.+.+++.++++.+.+.++++.+.++
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443333
No 42
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=90.55 E-value=0.5 Score=45.19 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 557 EKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 557 ~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+..+.++++.++..+++.|+|+-+.+-|+||.. +++.++.+
T Consensus 143 A~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~----ne~~~~v~ 184 (192)
T COG5374 143 ADSTDLKARLRKAQILLEGLQKNQEELFKLLDKY----NELREQVQ 184 (192)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----hHHHHHHH
Confidence 3333344444556668999999887777777655 44444444
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.53 E-value=7.8 Score=39.33 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=23.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
.+.+.|..|+..+|.+...+.+++.....+++.+.++.+.+..+--++
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444444444444444444443333
No 44
>KOG0995|consensus
Probab=90.53 E-value=2.3 Score=47.67 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV---GKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l---~~eydrl~~e~~~l~~~~~ 602 (609)
...+++++|++|+++++++.++-+.+.+.||+|.+.. ..++.|.--|.++|+..+.
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN 349 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888887777777788888877654 3556666666666665544
No 45
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.36 E-value=7.3 Score=36.48 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+++|+.++++++.++..++.+.-+++++...+..--..+.+|.++++
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 46
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.30 E-value=2.8 Score=41.14 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=30.4
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
.++..+..++.+|+.+.+..+++.+...+++..||..++.+..+-+..--+.+
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555554455556666666666666665555544443
No 47
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.89 E-value=1.4 Score=46.64 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
+|.+||++.+++....++++..++++.+.+.+|-.+...+++.+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~ 104 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL 104 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.87 E-value=1.5 Score=43.63 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~ 564 (609)
|+++.++|++|++...+
T Consensus 137 L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 137 LKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 49
>KOG0995|consensus
Probab=89.85 E-value=4.7 Score=45.32 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=13.0
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHh
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQA 512 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa 512 (609)
+....++|..+|.+........+.+++--
T Consensus 240 l~~~n~~l~e~i~e~ek~~~~~eslre~~ 268 (581)
T KOG0995|consen 240 LKKTNRELEEMINEREKDPGKEESLREKK 268 (581)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 34444555555554444444444444433
No 50
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.96 E-value=4 Score=47.69 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=53.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 510 SQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589 (609)
Q Consensus 510 kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr 589 (609)
+++.......++.-++-+.+.+.+... .+.++.+.+.++++++++++.+...++...+.+++.+++|.+.+.+++++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~---~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTI---PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555554321 12245666777777777777777777777777788888888888887777
Q ss_pred HHHHHHH
Q psy114 590 LLKEHEK 596 (609)
Q Consensus 590 l~~e~~~ 596 (609)
+.++..+
T Consensus 468 ~~~~~~~ 474 (650)
T TIGR03185 468 KTKQKIN 474 (650)
T ss_pred HHHHHHh
Confidence 6555433
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.95 E-value=15 Score=34.17 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
.-+..+|+......+.++..+++..+.-...-++.+.+... .+.-+++++.|+.++.....++...+.
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d------------aEn~k~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD------------AENSKAEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888877655544444333222 222356677777777777777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
|+.++++.-+.|.++-...-+..+.|
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666665555554444433
No 52
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=88.91 E-value=4.1 Score=50.43 Aligned_cols=9 Identities=0% Similarity=-0.319 Sum_probs=5.6
Q ss_pred CceEEEecC
Q psy114 211 GQLLCAFTI 219 (609)
Q Consensus 211 ~~~~C~F~~ 219 (609)
.++.|.+|.
T Consensus 23 ~~~~~i~G~ 31 (1164)
T TIGR02169 23 KGFTVISGP 31 (1164)
T ss_pred CCeEEEECC
Confidence 456677764
No 53
>KOG0933|consensus
Probab=88.74 E-value=4.6 Score=48.09 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=24.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
.+.+..+++.+|.++++..+++++.+++++.|+-..|.+.+|-+-+
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~ 834 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSL 834 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566665555566666655555555555554444433
No 54
>KOG0994|consensus
Probab=88.36 E-value=4.1 Score=49.00 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=38.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
..+|...+++||.+..+-+.+.+.+++.+.+.|.||..-.++.+.|-+.++...
T Consensus 1621 ~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~ 1674 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVD 1674 (1758)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777788888888888888887777776655554433
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.19 E-value=4.8 Score=42.26 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=20.2
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE 518 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ 518 (609)
|..+..||..-|...+.+...+..+..|.......
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 44556666666777777666666666666555444
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.91 E-value=2 Score=42.67 Aligned_cols=6 Identities=17% Similarity=0.003 Sum_probs=3.1
Q ss_pred CChhhH
Q psy114 480 DSDEIK 485 (609)
Q Consensus 480 ~~~~I~ 485 (609)
...||+
T Consensus 76 ~~GWV~ 81 (206)
T PRK10884 76 RTAWIP 81 (206)
T ss_pred CEEeEE
Confidence 345663
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.78 E-value=12 Score=39.54 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~ 565 (609)
.+...+..|-...+.+++..+.+..=.....+-...++.+-..|++...+-.. -+.++.+.+++++.++..++..+.++
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~-~d~~eL~~lk~~l~~~~~ei~~~~~~ 226 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED-CDPTELDRAKEKLKKLLQEIMIKVKK 226 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444444444444455555555555443332111 11233344444444444444444444
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+...+.++..++...+....+-..+.++.+++++
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 58
>KOG1003|consensus
Probab=87.68 E-value=7.1 Score=38.12 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=36.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+..+..+.++.+.+++.+.++|+.++.-.+-+-+....|.++-|+|-+.....+
T Consensus 132 ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 132 EEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 344455667778888888888888777777666777777777777755544433
No 59
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.59 E-value=6.6 Score=45.58 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC------CCcchhhcccCHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG------DKKDDKYQKGDSDEIKRLKEKL 559 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~------~~~~~~~~~~~~~e~~~lk~~l 559 (609)
+++-.=.+|-+||....++.|.++.-.|..-+.-...-+||..+.+.+.++. ++.-+.|..+++-|+++...+.
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~ 510 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNV 510 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333333333333344444433332211 1111233444555555555555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 560 SKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 560 ~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+...=+|+.+|.|-.+|.--..+=..|..||-|=.-.||+.++
T Consensus 511 k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 511 KSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666556666777888666666776654
No 60
>KOG4674|consensus
Probab=87.25 E-value=7.7 Score=49.45 Aligned_cols=114 Identities=26% Similarity=0.328 Sum_probs=74.2
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH---HhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK---VVTEQGDKKDDKYQKGDSDEIKRLKEKL 559 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~---~~~~~~~~~~~~~~~~~~~e~~~lk~~l 559 (609)
.|..++.++.+|-..++.+......++.+.+--+.+-+++-++++.=++ .+-++..+.+..+.++|..++..||++|
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777776777666666544 3334445556677778888888888888
Q ss_pred HHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy114 560 SKTEEELKKEKTNSAALK----NQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 560 ~~~~~~l~~~~~~~~~lk----kQ~~~l~~eydrl~~e~~~ 596 (609)
+.++........++..|| +|.+.+..+-+-+.++.++
T Consensus 1324 ~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~q 1364 (1822)
T KOG4674|consen 1324 EEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQ 1364 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776665555555555 5555555555444444433
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.24 E-value=11 Score=35.27 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=47.5
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
.|.++++++..|=.++..+......++..++...... ..++.+ ..-+..|.++++...+.|+..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l------------~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQL------------NRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHH------------HhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666565666555555555443333322211 111111 122334445555555555555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+.|..++..++.+-.+...|..+-|.+-+.+..+..+.
T Consensus 100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 100 TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555554444444444554444444444444444444443
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.84 E-value=5.8 Score=50.42 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+++++++.++++..+++.+++.+++.+++|...+..+.+.+-.+...++..
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~ 419 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQA 419 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555566666666555555665555555554443
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.75 E-value=4.2 Score=38.03 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=9.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q psy114 506 AALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 506 ea~~kQa~sa~~~ak~~~~e~ 526 (609)
.+++-.+++|..-|..+-++.
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~ 23 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKV 23 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 64
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.74 E-value=8.1 Score=42.38 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
+.+++|+.|++.++++++..+...+.|++|.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44666666776666666666666666666654
No 65
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.67 E-value=17 Score=36.71 Aligned_cols=113 Identities=17% Similarity=0.245 Sum_probs=60.9
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~ 564 (609)
.-+.-.|..+-.+|..++...+..+.....+.+.+++...+.+++...+...-...++.--.....+++.|+..++..+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666665555555655555555555544221111111111122334455566666666666
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
.+..+..-++.||++...|...|..+-.+++.+
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777776666665555544
No 66
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=24 Score=31.90 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHH
Q psy114 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSK 561 (609)
Q Consensus 482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~ 561 (609)
|.+....+++-.|..++.........+..|-.- .++-++|-+.+.....-.+ ..++--.+..-+++..+|++
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E----~~~al~Ele~l~eD~~vYk----~VG~llvk~~k~~~~~eL~e 77 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKE----IEKALEELEKLDEDAPVYK----KVGNLLVKVSKEEAVDELEE 77 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCcccHHHH----HhhhHHhhhhHHHHHHHHHH
Confidence 566777777777777777777666666544433 2233333333211100000 00000011122344444443
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
. ++.-+..+.+|.+|-+.+..+|+.|-.+.+++-+
T Consensus 78 r---~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 78 R---KETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3344568889999999999999999888666654
No 67
>KOG0996|consensus
Probab=86.56 E-value=7.9 Score=46.92 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
+.+++.|++-.+...+-|+.|...+..
T Consensus 506 esel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 506 ESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333
No 68
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=86.50 E-value=3.4 Score=39.28 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+++++++++-+++.++-++|.+.+.+|++....|+|++...|+...
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~ 114 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFD 114 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhH
Confidence 3444444444444445556889999999999999999988877643
No 69
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.49 E-value=6.7 Score=49.01 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=24.4
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
..+..++..+..+++........+++|.+++.....++.++.+.+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~ 425 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555544433
No 70
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.42 E-value=4.5 Score=38.52 Aligned_cols=110 Identities=19% Similarity=0.285 Sum_probs=56.3
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-------------CCcchhhcccC
Q psy114 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG-------------DKKDDKYQKGD 548 (609)
Q Consensus 482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~-------------~~~~~~~~~~~ 548 (609)
+.+..+.|.++..+-.|.++-+.+. .....-..+-++++.|.......+ .+....+.+.+
T Consensus 22 e~v~~LmP~VV~vLE~Le~~~~~n~-------~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L 94 (158)
T PF09744_consen 22 EAVKGLMPKVVRVLELLESLASRNQ-------EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDL 94 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766666654443333 222333334444444322111100 11122445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
...++.|+.+.+.+...++........+..+=..+.++|+++.+.|.++=
T Consensus 95 ~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l 144 (158)
T PF09744_consen 95 QSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELL 144 (158)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555544433333334555666667778888888777753
No 71
>PRK11281 hypothetical protein; Provisional
Probab=86.03 E-value=8.6 Score=47.47 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc-chhhcccCHHHHHHHHHHHHHHHHHHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK-DDKYQKGDSDEIKRLKEKLSKTEEELK 567 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~e~~~lk~~l~~~~~~l~ 567 (609)
..-..++.+.....+..++++++++.|-+..+....+-+.+++..+....+. .......+...+.++..+|++..++|.
T Consensus 66 ~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La 145 (1113)
T PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLA 145 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334577788888888888888888888887777776666655322211111 111123345555566666666666666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+.++.++..|-|.-+.+-..-....+++++++.
T Consensus 146 ~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 146 EYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666665554444455555555554
No 72
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.76 E-value=9.7 Score=37.59 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=44.8
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
|+.--..|++|-.+|+..++...+...++..+..+...--.+-+.....+... ..+...+++++.+|+.|+..+.
T Consensus 26 ~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~-----~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 26 VNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRK-----KNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH-----hCHHHHhhhhhhhhHHHHHHHH
Confidence 44555677888888888888888888888877776654322222222221111 1223344455555555555555
Q ss_pred HHHHH
Q psy114 564 EELKK 568 (609)
Q Consensus 564 ~~l~~ 568 (609)
+++..
T Consensus 101 ~~l~~ 105 (202)
T PF06818_consen 101 EELAC 105 (202)
T ss_pred HHHHh
Confidence 54444
No 73
>KOG0977|consensus
Probab=85.69 E-value=5.5 Score=44.99 Aligned_cols=96 Identities=11% Similarity=0.230 Sum_probs=65.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC--CCcchhhcccCHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHH
Q psy114 507 ALKSQADSVGKEYDRLLKEHEKVQKVVTEQG--DKKDDKYQKGDSDEIKRLKEKLSKTEE----ELKKEKTNSAALKNQA 580 (609)
Q Consensus 507 a~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~e~~~lk~~l~~~~~----~l~~~~~~~~~lkkQ~ 580 (609)
.++++++.++.....+-||-......+..-. ..+.+.-+..|.++|+.|+-+|.+-.+ +|...++++.-|+.|+
T Consensus 279 ~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec 358 (546)
T KOG0977|consen 279 EIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREEC 358 (546)
T ss_pred HHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 4444555555555555555544433322211 222345567788888888887766544 4666788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy114 581 DSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 581 ~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..|..||..|++=...|+..+.
T Consensus 359 ~~l~~Elq~LlD~ki~Ld~EI~ 380 (546)
T KOG0977|consen 359 QQLSVELQKLLDTKISLDAEIA 380 (546)
T ss_pred HHHHHHHHHhhchHhHHHhHHH
Confidence 9999999999999999987765
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.64 E-value=24 Score=34.79 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=59.0
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
|+.-...+.+|-.+|+......-++.+...-....-.+.-++...|++..++++. .|-..|..++..++.++++.+
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL----~eReeL~~kL~~~~~~l~~~~ 138 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNL----AEREELQRKLSQLEQKLQEKE 138 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hhHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666655555555544444444444444332211 222334444444444444444
Q ss_pred HHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 564 EELKKE-----------KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 564 ~~l~~~-----------~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+++... ..++.+-++....+..+++.|.+|.+.|++.+.+
T Consensus 139 ~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 139 KKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222 2223333444455556666777777777776653
No 75
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.59 E-value=7.8 Score=47.75 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=70.2
Q ss_pred HHhhhhhHHHHHHHHhhhhH----HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNS----AALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSK 561 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~----ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~ 561 (609)
....++..+-++++...... ..+.++-+.. .+|++-+.+.+..-++....+..-.......+..|..-++.+++.
T Consensus 113 ~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~ 191 (1109)
T PRK10929 113 QVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDE 191 (1109)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555444444 4444444444 334444444433211111111111234455667777888888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.++..+.+-.+-.++|.+-+.++++++-.+.+.||+.+.
T Consensus 192 l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 192 LELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999888888887665
No 76
>PRK02224 chromosome segregation protein; Provisional
Probab=85.47 E-value=7.4 Score=47.02 Aligned_cols=54 Identities=15% Similarity=0.307 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.+..+++.+++++++.+.++..+..+++.+....+.+..+++.+.++...++.
T Consensus 380 ~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~ 433 (880)
T PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544444444444445555555555555555555444
No 77
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.31 E-value=19 Score=38.95 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=49.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGD 606 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~ 606 (609)
++-+..+++.|-.+++....+|.+++......-.-...+++|+.++.+|.++.++++++.|+
T Consensus 261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44456667777777777777777777777777778888899999999999999999886554
No 78
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.77 E-value=17 Score=36.74 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
++......+...+..++.++.|.+..+..+..+..||.+|.++.++++.+
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555566677788888888999999999999999999877
No 79
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.70 E-value=7 Score=32.15 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy114 580 ADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~~ 599 (609)
-+.|..|..+|.+|++.-+.
T Consensus 41 ~~~L~~en~~L~~e~~~~~~ 60 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 80
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.52 E-value=3.2 Score=36.87 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
-..+..|++++...- .++.+||+|...|..|=.+|.-|+++|+..+.
T Consensus 7 ~~~l~~le~~l~~l~-------~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLL-------EELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665554 48999999999999999999999999998876
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.18 E-value=11 Score=47.63 Aligned_cols=108 Identities=11% Similarity=0.189 Sum_probs=54.2
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL---LKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKL 559 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~---~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l 559 (609)
.+..+...+..+-.+++.+....+.+..+.+..++.-+.+ +.+-...+..+.+ ....-..+..++++|++++
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~-----~l~~r~~le~~L~el~~el 897 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT-----NLQRRQQFEEQLVELSTEV 897 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3455666666555666666555555565555555555555 2222211111111 0122334455555555555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 560 SKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 560 ~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
.+...+++..+.+++-++...+.+..+|+++..+..
T Consensus 898 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544433
No 82
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.99 E-value=15 Score=34.90 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=32.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.+..|.++|+.|++++.++.+..+++++.|+++.+-+..+|.-|..=....+
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666677777777777777766655444444
No 83
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.98 E-value=9 Score=40.33 Aligned_cols=84 Identities=15% Similarity=0.240 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 514 SVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 514 sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
...+-++|-|-.|..|... +....=+...|+.+++.|++.+..+.++..+.-.+++.+|.....|..|.|-|.++
T Consensus 88 evEekyrkAMv~naQLDNe-----k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNE-----KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHhhhchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777665111 00012335667777777777777777777777778888888888888888888777
Q ss_pred HHHHHhhhh
Q psy114 594 HEKVQKVVT 602 (609)
Q Consensus 594 ~~~l~~~~~ 602 (609)
..+....++
T Consensus 163 L~~rdeli~ 171 (302)
T PF09738_consen 163 LKQRDELIE 171 (302)
T ss_pred HHHHHHHHH
Confidence 766554443
No 84
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.86 E-value=16 Score=39.33 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=28.6
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
.+..|.+.|..+-+||.......++....-+-++.++.+--+|.+..
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v 121 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV 121 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887777777666666666655444555555554444443
No 85
>KOG0933|consensus
Probab=83.81 E-value=7.3 Score=46.46 Aligned_cols=111 Identities=24% Similarity=0.374 Sum_probs=48.7
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCC--cchhhcccCHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK--KDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~--~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
.-.+|+..|..++.......++..+--+.....+.++..|.+.+++........ ........+..++.+|+.++.+..
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445555555555555555555555555555555555555554433221100 011223334444444444444444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 564 EELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 564 ~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
+.+.++++++...|+---+..+|.+.++.+-++
T Consensus 864 ~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~ 896 (1174)
T KOG0933|consen 864 KDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK 896 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence 444444444444444333444444444433333
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.58 E-value=11 Score=42.94 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=27.5
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr 589 (609)
+.+.++.++++|+.+..+..++|...+.+++.++.+-+.+.+|-++
T Consensus 359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555556666666666666666666555544
No 87
>KOG0980|consensus
Probab=83.39 E-value=16 Score=43.14 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 501 EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 501 ~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
+....+...||.+++..+-...-+++..|...+
T Consensus 443 lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~l 475 (980)
T KOG0980|consen 443 LLRKYDDIQKQLESAEQSIDDVEEENTNLNDQL 475 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455566677777766665555555554433
No 88
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.36 E-value=17 Score=35.25 Aligned_cols=59 Identities=12% Similarity=0.312 Sum_probs=42.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+...++++.++...++..++.....+++..++.+++.+..++.++.++++.+++.++
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666667778888888888888888888887665
No 89
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=83.33 E-value=20 Score=31.48 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.-+.+-|.+.|.+++-.++.+++.+|....
T Consensus 83 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 83 SDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447789999999999999999999998654
No 90
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=83.32 E-value=7 Score=40.32 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
-+.+|++===....||++|-+|.+++
T Consensus 212 RL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 212 RLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 33333333333446777776666554
No 91
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.01 E-value=7.2 Score=32.43 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=37.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+.-|+-|+++||.+=.... .+++.++.+-+.|..|.+.|.+||+.-|.++.
T Consensus 18 dtI~LLqmEieELKekn~~L~-------~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLS-------QEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665554444 47778888888888899999999988777665
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.97 E-value=40 Score=35.33 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
....+...+.++..|+.+.+...+||..|++-.-.|...++
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445566788889999999999999999988777776554
No 93
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.93 E-value=3 Score=39.94 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=30.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAAL---------KNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~l---------kkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
++...+..++..|+++++..+.+.+..+.++..| +.+.+.|..|...|.+....|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666666665555555555444 44455555555555555444443
No 94
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.85 E-value=26 Score=38.01 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKN 578 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkk 578 (609)
++..++.++...+.++..++.+++.++.
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 231 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQL 231 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 95
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.61 E-value=16 Score=43.28 Aligned_cols=120 Identities=16% Similarity=0.229 Sum_probs=77.0
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhhhc---------CCCcchhhcccCHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADS--VGKEYDRLLKEHEKVQKVVTEQ---------GDKKDDKYQKGDSDE 551 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~s--a~~~ak~~~~e~~~l~~~~~~~---------~~~~~~~~~~~~~~e 551 (609)
.+.++..++..+-.+|+......++++++-.. .+..++.++++-..++..+... .-+++.-....++.+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 46788888988889999999999999987533 2233444444443332221110 011222334445555
Q ss_pred HHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 552 IKRLKEKLSKTEEELK---KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~---~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..|++++++.+.++. ..+.++..|+.+.+-...=|+.|+...++++-+.+
T Consensus 348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566665555554443 35778889999999999999999999998865543
No 96
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.50 E-value=9.7 Score=43.69 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
+......++.++.....++...++|++-..+.-..+.+.+..|
T Consensus 504 laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L 546 (786)
T PF05483_consen 504 LAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL 546 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666666555555555444
No 97
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=82.35 E-value=8.6 Score=32.82 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=37.1
Q ss_pred hhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 102 NFYIS-----GFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALL 151 (609)
Q Consensus 102 N~Yis-----Gf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~~~ 151 (609)
|+||. -|++++.++.+++-.+=++.+.|.++++.++.+.+-+++..|.+=
T Consensus 3 ~l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 3 NLQIVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45664 245556667788888888899999998888888777777776654
No 98
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.27 E-value=15 Score=45.92 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl 590 (609)
+.+.+.+|.+.+..+-+.+
T Consensus 885 ~~~~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 885 EKEELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 99
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.01 E-value=18 Score=41.59 Aligned_cols=117 Identities=10% Similarity=0.243 Sum_probs=58.1
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---cC-C-CcchhhcccCHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE---QG-D-KKDDKYQKGDSDEIKRLKE 557 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~---~~-~-~~~~~~~~~~~~e~~~lk~ 557 (609)
.+..+..+|..|=..+.++........+-.....+.-...-+++..++..+.. .+ . +.+.+....+.++++++++
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~ 362 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK 362 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555555555555554444444555554443222 11 1 1222334555666666666
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 558 KLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 558 ~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+++...+.+.........++++.+.+.++.+.+.+++.+++.
T Consensus 363 ~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 363 QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555444333444444444444444444444444433
No 100
>KOG4360|consensus
Probab=81.65 E-value=15 Score=40.85 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 495 EEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 495 i~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
..+|+-..+..-.+++..++-++...+++||+.+|-..+
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666666666666654443
No 101
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.64 E-value=17 Score=40.84 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=18.1
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhh
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQAD 513 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~ 513 (609)
.|..+..++..+-.+++...+...++++|..
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555666666666666666666666665533
No 102
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.62 E-value=34 Score=35.21 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=67.4
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHH-------HHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSD-------EIKRLKEK 558 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~-------e~~~lk~~ 558 (609)
....+|..|-.||.++.+...-=+=|.+|...|-.|--...+.-+.. .....-|+..+.+ -.+||.-+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e-----~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE-----YSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 34445566677777877777666667777776654421111110000 0111122333333 33445555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|..++-.+.-.|..+..-|+|.+.|..|.-|+..|..+.|....
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555666778889999999999999999999998886544
No 103
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.37 E-value=8.9 Score=36.36 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 564 EELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 564 ~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
.+.++.+.++..|++|-+.|.+|+..|.++++..
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666666664444443
No 104
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.28 E-value=16 Score=37.28 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
..+..|++.|+...+..++.+...+.+++.|+.|.+.+
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 105
>KOG0977|consensus
Probab=81.27 E-value=18 Score=41.08 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=70.2
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHhhhcCCC--cchhhcccCHHH
Q psy114 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE--------YDRLLKEHEKVQKVVTEQGDK--KDDKYQKGDSDE 551 (609)
Q Consensus 482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~--------ak~~~~e~~~l~~~~~~~~~~--~~~~~~~~~~~e 551 (609)
..|..+.-||..-|.-.+.+.+.+-+|..+..-+..+ +..|=.|-..+.+.+.+...+ +.+.++.++..|
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3577788888888888888888888888877665544 223333333333333332211 123567778888
Q ss_pred HHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 552 IKRLKEKLSKTEEELKK--------------EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~--------------~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+++|+..+.++.+.+.. .++++..+|.--+-+..|-.||..|+..|..+++
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 88888777777544322 2344444444444444444555555555554443
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.81 E-value=7.9 Score=44.79 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA-------DSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~-------~~l~~eydrl~~e~~~l~~~ 600 (609)
|.+++.+|+.++...++.++....++..|+.|- ..-...|..|..|++.|+.+
T Consensus 200 L~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444444444444555554443 33445666777777777654
No 107
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.74 E-value=6.9 Score=37.86 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH-HHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 509 KSQADSVGKEYDRLLKEHEKVQ-KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 509 ~kQa~sa~~~ak~~~~e~~~l~-~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey 587 (609)
..||+...++-...+.++-... +.+..+ .+.+......+..+.+|+.|+....+ .++..|+.+.+.|..|+
T Consensus 18 ~~QAe~i~~~l~~~l~~~~~~~~~~~vtk--~d~e~~~~~~~a~~~eLr~el~~~~k------~~~~~lr~~~e~L~~ei 89 (177)
T PF07798_consen 18 EEQAEAIMKALREVLNDSLEKVAQDLVTK--SDLENQEYLFKAAIAELRSELQNSRK------SEFAELRSENEKLQREI 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3566666666666665553211 111000 00112233334455555555554332 56666666666666666
Q ss_pred HHHHH
Q psy114 588 DRLLK 592 (609)
Q Consensus 588 drl~~ 592 (609)
|.|-.
T Consensus 90 e~l~~ 94 (177)
T PF07798_consen 90 EKLRQ 94 (177)
T ss_pred HHHHH
Confidence 65544
No 108
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.71 E-value=13 Score=32.63 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=13.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
.+.+.++++++|++++..++++...+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555543333333
No 109
>KOG4403|consensus
Probab=80.66 E-value=21 Score=38.85 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=13.9
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
|++..++|+|.|..+|++++++|+.
T Consensus 303 e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445666666666666665543
No 110
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=80.65 E-value=8.3 Score=31.91 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEE 564 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~ 564 (609)
++.++|+.+|..+++
T Consensus 5 ~qNk~L~~kL~~K~e 19 (76)
T PF11544_consen 5 KQNKELKKKLNDKQE 19 (76)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 344444444444433
No 111
>KOG3611|consensus
Probab=80.64 E-value=0.98 Score=53.02 Aligned_cols=36 Identities=25% Similarity=0.681 Sum_probs=31.7
Q ss_pred eeeeccccccCccccccccCCCC-CccCCCCCccccC
Q psy114 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHD 307 (609)
Q Consensus 272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~ 307 (609)
..+++-+|+.|..|..|.-.+|| |+|-...+.|++.
T Consensus 487 ~qvpl~~C~~y~~C~dcclarDPYCAWd~~~~~C~~~ 523 (737)
T KOG3611|consen 487 VQVPLARCSRYGSCADCCLARDPYCAWDGVNSKCSLL 523 (737)
T ss_pred EEeehhHhhcccchhhhhhccCCCccccCCCCcceEC
Confidence 46889999999999997666999 9999988999975
No 112
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=52 Score=30.92 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=61.6
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc-C-----------------CCcch-------
Q psy114 488 KEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQ-G-----------------DKKDD------- 542 (609)
Q Consensus 488 ~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~-~-----------------~~~~~------- 542 (609)
...+..|+.++.-.....+++..|....+.+-..+..--+.++..-... | .+.++
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 3456667777777777777777777777777666655555544321111 1 00000
Q ss_pred --hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy114 543 --KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQ 604 (609)
Q Consensus 543 --~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~ 604 (609)
--+++..+=++-|++++++.++.+. .|..-.+.|.+.++.+..+.++++.+....
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~-------~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIE-------KLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0023333345666777666665333 344445556666667777777777655433
No 113
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.30 E-value=57 Score=34.14 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=43.7
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKK------EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~------~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+++..+.+++.+|+++|...+++++. ..++++.+|+.+..+..+...|.++.++-.+++.
T Consensus 131 e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~ 196 (294)
T COG1340 131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMI 196 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888887765543 2467778888888888888888888777666554
No 114
>PRK11519 tyrosine kinase; Provisional
Probab=80.26 E-value=20 Score=42.50 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=74.6
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhhh----------cCCCcchhhcccCH
Q psy114 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADS--VGKEYDRLLKEHEKVQKVVTE----------QGDKKDDKYQKGDS 549 (609)
Q Consensus 482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~s--a~~~ak~~~~e~~~l~~~~~~----------~~~~~~~~~~~~~~ 549 (609)
..+.++..++..+-.+|+......++++++-.. ....|+..++.-..++..+.+ ..++ +......+.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~-~hP~v~~l~ 345 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTK-EHPAYRTLL 345 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHH
Confidence 356788888988889999999999999887654 344555555444433322211 1111 122223334
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 550 DEIKRLKEKLSKTEEE---LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~---l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+...|++++++.+.+ +-+.+.++..|+.+.+-..+-|+.|+...++++-+
T Consensus 346 ~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~ 399 (719)
T PRK11519 346 EKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444555544444433 34467788899999999999999999998887644
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.13 E-value=20 Score=32.89 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=23.4
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk 578 (609)
+....++.+...++.++.....++..+...++..+.
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~ 94 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEA 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777666666666654444
No 116
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.07 E-value=28 Score=33.51 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy114 584 GKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 584 ~~eydrl~~e~~~l~~~~~ 602 (609)
..+||+..++..+++..+.
T Consensus 144 l~Dy~~~~~~~~~l~~~i~ 162 (177)
T PF13870_consen 144 LRDYDKTKEEVEELRKEIK 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467777777777766543
No 117
>KOG0946|consensus
Probab=79.98 E-value=9.8 Score=44.44 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=41.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+..++.++|++.+.+-...+.+...++.|+++...+++|-.+...+..+|+.++.
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k 865 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIK 865 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhh
Confidence 334455566666666666666666778888998888888888888777777776554
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.74 E-value=16 Score=38.60 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
++|.+++|.+.|..+|..+++|.+++-..
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999998887543
No 119
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.50 E-value=46 Score=30.10 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcch---hhcccCHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD---KYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~---~~~~~~~~e~~~lk~~l~~~ 562 (609)
.+++.+..++.++..+......+..|-+......+ +++.....+..-..+... ...--.+...++++++++++
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~----e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r 79 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELR----EINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKER 79 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHH
Confidence 35666666666776666666666555444433322 222222222111111100 00001111223333333332
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
. +..+.++..+.||.+.+.+.+..+-++..++..+.
T Consensus 80 ~---E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 80 K---ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23335777788888888777777777666665543
No 120
>PRK14011 prefoldin subunit alpha; Provisional
Probab=79.39 E-value=30 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
.++..++.+|.......+.+..+.+..+.+..++-+-.+.++.
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~ 45 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEG 45 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888999999999999999999988888766666653
No 121
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.37 E-value=22 Score=45.12 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=25.7
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEK 528 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~ 528 (609)
...+.++|..|.+++..+......+.++.+.+...-.++..+.+.
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345666666666666666666666666555555554444444433
No 122
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.34 E-value=19 Score=42.71 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=78.9
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc--chhhcccCHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK--DDKYQKGDSDEIKRLKEKLS 560 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~--~~~~~~~~~~e~~~lk~~l~ 560 (609)
.|-..+.++.++-++..-++...+.++.+......-+..+..+.+.|..-+..+...- ...-+..+.+|...++.|+.
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~ 381 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE 381 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888999999999999999999999999999999999999998877665544221 12334445555556666666
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy114 561 KTEEELKKEKTNSAALKNQADSVG----KEYDRLLKEHEKVQ 598 (609)
Q Consensus 561 ~~~~~l~~~~~~~~~lkkQ~~~l~----~eydrl~~e~~~l~ 598 (609)
++.+.+.+.+.++..|++..|+|. ....+|.++...|.
T Consensus 382 ~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 382 DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666654443 33333545555554
No 123
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.12 E-value=25 Score=42.01 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=33.2
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
|...|..-...+...-.++..+.+..++.+++.+...+.+++..++.+.+++.+
T Consensus 495 p~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 495 PHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555556666666667777777777777777766666655554
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.10 E-value=27 Score=35.34 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=39.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
......+..|+.+|+........+++.+..|.++.+.|..+.+.-.++|..++..|+
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777776666667777777777777777777777777777776654
No 125
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=78.90 E-value=29 Score=38.10 Aligned_cols=100 Identities=22% Similarity=0.234 Sum_probs=54.7
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHH---------------------HHHHHHHHHHHHHhhhcCCCcc-h----
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEY---------------------DRLLKEHEKVQKVVTEQGDKKD-D---- 542 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~a---------------------k~~~~e~~~l~~~~~~~~~~~~-~---- 542 (609)
.+..++-.+|...+.-.+.++.-.+-|-.+- ++.|+..++.|+++++.|.+.- .
T Consensus 309 ~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~ 388 (488)
T PF06548_consen 309 SLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFIN 388 (488)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3345555666666666554443333333332 2335555666777777664331 1
Q ss_pred ---hhc-----------ccCHHHHHHHHHHHHHHHHHHHHh------------------------hhhHHHHHHHHHHHH
Q psy114 543 ---KYQ-----------KGDSDEIKRLKEKLSKTEEELKKE------------------------KTNSAALKNQADSVG 584 (609)
Q Consensus 543 ---~~~-----------~~~~~e~~~lk~~l~~~~~~l~~~------------------------~~~~~~lkkQ~~~l~ 584 (609)
.|+ +-++.|.+-|+.+|+++.++++.| +.|.+-++||.+.|.
T Consensus 389 slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK 468 (488)
T PF06548_consen 389 SLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLK 468 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 334446777888888877775433 445555666666666
Q ss_pred HHHH
Q psy114 585 KEYD 588 (609)
Q Consensus 585 ~eyd 588 (609)
+.|+
T Consensus 469 ~kh~ 472 (488)
T PF06548_consen 469 RKHK 472 (488)
T ss_pred HHHH
Confidence 6554
No 126
>PRK02224 chromosome segregation protein; Provisional
Probab=78.90 E-value=27 Score=42.22 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=6.9
Q ss_pred CceEEEecCC
Q psy114 211 GQLLCAFTIG 220 (609)
Q Consensus 211 ~~~~C~F~~~ 220 (609)
.++.+.+|..
T Consensus 23 ~g~~~i~G~N 32 (880)
T PRK02224 23 DGVTVIHGVN 32 (880)
T ss_pred CCeEEEECCC
Confidence 4678888853
No 127
>KOG4673|consensus
Probab=78.69 E-value=25 Score=40.42 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=50.8
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEEL 566 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l 566 (609)
.+-.|.++..+...+....+|=..|+-+... .+.|-+++.++.....-+.+....++..+++| .-..++.+++++
T Consensus 344 ~q~eLdK~~~~i~~Ln~~leaReaqll~~e~--~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e---~~QRva~lEkKv 418 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEAREAQLLADEI--AKAMLEEEQLNSVTEDLKRKSNESEVSSLREE---YHQRVATLEKKV 418 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHhhcccccchHHH---HHHHHHHHHHHH
Confidence 4555666666666666666654444444333 34443443333322221122233445555544 333455555555
Q ss_pred HHhhhhHHHHHHHHHHHHHHH
Q psy114 567 KKEKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 567 ~~~~~~~~~lkkQ~~~l~~ey 587 (609)
..+-++.+|+|+|.++|.+|.
T Consensus 419 qa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 419 QALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 666668888888888777665
No 128
>KOG0971|consensus
Probab=78.66 E-value=24 Score=41.84 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=15.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 506 AALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 506 ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
+-++-|-++..+-.-+.|+.+..|++.+
T Consensus 258 ekmkiqleqlqEfkSkim~qqa~Lqrel 285 (1243)
T KOG0971|consen 258 EKMKIQLEQLQEFKSKIMEQQADLQREL 285 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 129
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.43 E-value=33 Score=38.38 Aligned_cols=55 Identities=7% Similarity=0.178 Sum_probs=38.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+.+++.+++.++++.+..+ +...+..+|+.|.++|..--.++..|-.+|.+.|.+
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~---~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFG---KEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555555555544332 122356799999999999999999999999988863
No 130
>KOG1029|consensus
Probab=78.40 E-value=13 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 567 KKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 567 ~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+.+++.|.||.|---.|.|.|..+.+++|+.+.
T Consensus 468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888777777776543
No 131
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=78.34 E-value=42 Score=33.82 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
+-++|.+.+..+|+|++.|..-++|++.+
T Consensus 116 ~y~~E~K~~~~~l~K~~sel~Kl~KKs~~ 144 (223)
T cd07605 116 DYKKEYKQKREDLDKARSELKKLQKKSQK 144 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445555555666766676666666554
No 132
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.25 E-value=38 Score=33.34 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQAD-SVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~-~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++.++++++.++.+.+.++..|++-++ +-..|=|.|..+...++..++
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ 135 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554 222344556555555555554
No 133
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.80 E-value=33 Score=34.17 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=19.9
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLL 523 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~ 523 (609)
.....+..+-..++..++...-++++.+.+.+.+.+|-
T Consensus 34 d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 34 DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555554
No 134
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.75 E-value=36 Score=38.75 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=23.6
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
+..++..+.+|.++|.......+.++..-..+......+-.+-...+.
T Consensus 304 ~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 304 ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 334444455555555555555555555554444444444444434333
No 135
>PRK00106 hypothetical protein; Provisional
Probab=77.41 E-value=23 Score=40.36 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
|++++++|.+.+.+++..+++.+.+.++|+.+.++.
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~ 155 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQK 155 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555566666666554443
No 136
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.35 E-value=33 Score=40.43 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=29.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.++....+|+.|++++..+|+..|..+..|+++.+.|
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888888888888877655
No 137
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.33 E-value=20 Score=41.22 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=67.8
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcc--hhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD--DKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~--~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
|+.-|-+.....-.+..|-..+...-+.|..+.+.++..+.....+.. ...-+.+.-|.+.+..+.....-++++.+.
T Consensus 441 l~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qe 520 (786)
T PF05483_consen 441 LTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQE 520 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333344444455555666666666666777777777665543222211 122334444555555555555556777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|+..-|+|.+.+.++..+|-++...|++.+.
T Consensus 521 di~~~k~qee~~~kqie~Lee~~~~Lrnele 551 (786)
T PF05483_consen 521 DINNSKKQEEKMLKQIENLEETNTQLRNELE 551 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877665
No 138
>PLN03188 kinesin-12 family protein; Provisional
Probab=77.31 E-value=20 Score=44.26 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhcCCCc-ch-------hhcc-----------cCHHHHHHHHHHHHHHHHHHH
Q psy114 521 RLLKEHEKVQKVVTEQGDKK-DD-------KYQK-----------GDSDEIKRLKEKLSKTEEELK 567 (609)
Q Consensus 521 ~~~~e~~~l~~~~~~~~~~~-~~-------~~~~-----------~~~~e~~~lk~~l~~~~~~l~ 567 (609)
+.||..++.|+++++.|.+. +. +|+. -++.|.+.|+.+|.++.+|++
T Consensus 1132 ~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~ 1197 (1320)
T PLN03188 1132 RIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ 1197 (1320)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 33555666777888877443 21 2222 233446666777766666643
No 139
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.26 E-value=25 Score=40.63 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
-.++..++.+.+.+..|...--+.|.+|...++
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777776666666666666655
No 140
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=77.26 E-value=9.6 Score=31.05 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=40.5
Q ss_pred EEecccCCCccccCCceEEEeecCCCCCCCceEEEecCCCccccccc-eecCCceeecCCCC
Q psy114 182 ARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEA-IKQTNGVKCATPPT 242 (609)
Q Consensus 182 ~~~~~~P~n~s~~~~~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a-~~~~~~v~C~sP~~ 242 (609)
.|+++.|...+....+.++|+=.++..-...+.|.|++..- ... ....+.+.|.+|+.
T Consensus 2 ~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~---~~~~~~~~~~i~c~~p~~ 60 (85)
T PF01833_consen 2 VITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQC---TVITVVSSTQITCTSPAL 60 (85)
T ss_dssp EEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEE---EEEGEEETTEEEEE--SC
T ss_pred EEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEee---eEEEEECCcEEEEEECCC
Confidence 57888998777777778888888885445679999997531 122 34567899998864
No 141
>KOG0250|consensus
Probab=77.22 E-value=15 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
+.+++.+..|...|..|++.+.++
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 142
>KOG0963|consensus
Probab=77.22 E-value=31 Score=39.35 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.+..+.++.+.++.+..+++++...+++.||++.++. ..||.+.+|..-|+.
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 34455556667777788888888888999999999888 899999999888874
No 143
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.16 E-value=2.9 Score=44.89 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+.++.++++++.++++..++|...+.++..+..+.+.|.++|+....|.++|+.++
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555666666666666666666666666665544
No 144
>KOG4673|consensus
Probab=76.89 E-value=16 Score=41.89 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=38.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
++.+.+-|+|+..+++..++.+...+.++++|..|+-.++.-+|.+-.+.
T Consensus 518 Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dl 567 (961)
T KOG4673|consen 518 EKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDL 567 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 45555567778888888888888888888888888888888887776543
No 145
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=76.89 E-value=21 Score=41.12 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=24.2
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhH-----HHHHHHhhh
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNS-----AALKSQADS 514 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~-----ea~~kQa~s 514 (609)
....|..++.++..|..+|+.+.... .++++|.+.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREE 288 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888889988888888766554 345555544
No 146
>KOG0250|consensus
Probab=76.86 E-value=31 Score=41.94 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCC-----cchhh-------cccCHHHHHHHHHHHHHHHHHHHH
Q psy114 501 EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK-----KDDKY-------QKGDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 501 ~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~-----~~~~~-------~~~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
.....--++++-.+..+..++.+.|-..|+..++....+ ++..+ ++...+.+++++++++....+...
T Consensus 694 ~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e 773 (1074)
T KOG0250|consen 694 LEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQE 773 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666777766666666531111111 11122 333333445556666655555566
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+...++.+.-.++....||.|.+|...-+..+.
T Consensus 774 ~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~ 807 (1074)
T KOG0250|consen 774 LEEYYAAGREKLQGEISKLDALKEELKLREDKLR 807 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6677778888888888888888777765554444
No 147
>PRK14148 heat shock protein GrpE; Provisional
Probab=76.78 E-value=6.4 Score=38.79 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=30.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
.+.+.+.+++++|++++++.++.+..+.+|.+.+||.++.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567778888888888888888888888888876543
No 148
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=76.75 E-value=46 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.-.-+-|.+.|.+++-..+.+++.+|...
T Consensus 83 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 83 DRIRKTQHSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888654
No 149
>KOG0994|consensus
Probab=76.66 E-value=26 Score=42.68 Aligned_cols=51 Identities=6% Similarity=-0.100 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy114 105 ISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPR 155 (609)
Q Consensus 105 isGf~LfL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~~~~~~~ 155 (609)
|-+...=|..+=-++-.+-..+....+.+|.+.+.+.....+.+.|=++..
T Consensus 1241 l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1241 LQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544444444444555555555555555555544333
No 150
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=76.53 E-value=0.9 Score=40.04 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=1.1
Q ss_pred CceEEEecccCCCccccCCceEEEeecCCCCC--CCceEEEecCCC-cccc-ccceecCCceeecCCCCCCCCCCCCCCC
Q psy114 178 STRVARSFSAQNGISDLKPRTLDLAIENLPEL--PGQLLCAFTIGE-TTVT-TEAIKQTNGVKCATPPTKDIPSIPVGQH 253 (609)
Q Consensus 178 ~~~~~~~~~~P~n~s~~~~~~v~l~v~~lP~L--~~~~~C~F~~~~-~~~~-~~a~~~~~~v~C~sP~~~~lP~ip~g~d 253 (609)
.+|+.|..+.|+.+-..+.-+|.+.=.+.-.. .+++-|.|--.. ..+. -|..++++.+.|+.|-..+ +|+.
T Consensus 3 kSC~Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~~~d~ViC~F~~n~t~~~~~KP~~v~dt~llCPaP~l~~-----~G~~ 77 (105)
T PF05587_consen 3 KSCIEILSVEPSSVCVGESFQVVVRGNGFNNARNVDQVICRFKFNDTKTVDEKPVSVEDTYLLCPAPVLEE-----PGQT 77 (105)
T ss_dssp CB------------------------------------------------------------------------------
T ss_pred cceeeEEEEcCCceECCCceEEEEECccccccCCCCeEEEEEEECCeeEEEeCCcEEcCCEEECCCccccC-----CCCE
Confidence 46999999999998888776776654444322 267999996321 0111 3445667889998764322 2542
Q ss_pred eeEEEEEEEecCCCcceeeeeecc
Q psy114 254 NITAKLSVRSSNGPDFVTTKFMFF 277 (609)
Q Consensus 254 ~v~v~L~L~~~~~~~~as~~f~fy 277 (609)
+. |++..++|+.|.+.++.+.
T Consensus 78 -~~--v~VSlNnG~sFiss~v~It 98 (105)
T PF05587_consen 78 -IF--VEVSLNNGKSFISSSVTIT 98 (105)
T ss_dssp ------------------------
T ss_pred -EE--EEEEEcCCEEEecCCeEEE
Confidence 33 3444467888888887764
No 151
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.43 E-value=19 Score=29.25 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=33.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+.-|.-|+++||++-..+.. ++..++.+-|.|.+|-..|.+||+.-|..+.
T Consensus 18 dTI~LLQmEieELKEknn~l~~-------e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667777777777666655 4555555666666666667777776665543
No 152
>KOG0161|consensus
Probab=76.40 E-value=25 Score=45.72 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=5.5
Q ss_pred HHHhhhhHHHHHHH
Q psy114 509 KSQADSVGKEYDRL 522 (609)
Q Consensus 509 ~kQa~sa~~~ak~~ 522 (609)
.+++.++++.-.++
T Consensus 1005 eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKL 1018 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 153
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=76.33 E-value=14 Score=38.91 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 505 SAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 505 ~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
...+..|.-.++...|.++.||+.+...+
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33334444444444444444444444433
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.22 E-value=24 Score=41.51 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q psy114 581 DSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 581 ~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
||+.-|..||.||.+-|+.|+++
T Consensus 124 E~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 124 EGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777664
No 155
>PRK12704 phosphodiesterase; Provisional
Probab=76.18 E-value=21 Score=40.58 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 558 KLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 558 ~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
+|++++++|.+.+++++..+++.+.+.+||+++.++..
T Consensus 104 ~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~ 141 (520)
T PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666666666666666655443
No 156
>KOG0243|consensus
Probab=76.15 E-value=24 Score=42.77 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+|+.+++..|++.+..+.+.+.--..+..|+..|.+.++.-.++.+.|-..+.
T Consensus 501 ~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 501 SLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444443333333444445666788888888888888777766554
No 157
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.10 E-value=22 Score=40.43 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.+++++..+++.+...++++++.+|
T Consensus 102 re~~Le~ke~~L~~re~eLee~~~e 126 (514)
T TIGR03319 102 KEENLEKKEKELSNKEKNLDEKEEE 126 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 158
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.92 E-value=42 Score=35.64 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=42.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY--------------DRLLKEHEKVQKVVT 602 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey--------------drl~~e~~~l~~~~~ 602 (609)
.+++..+++.|+.++...-++.+....|.++.|..++.|+.|- |.|..|+--|+.++.
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 3445555666666777777777778888999999999999884 777777777766554
No 159
>KOG1937|consensus
Probab=75.88 E-value=31 Score=37.89 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=55.3
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~ 564 (609)
..-.++|.+|..+++....+++.+.+|-+..... ++.+...|+..+...+. +.+. -.++++|+.+|...++
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~p---ll~kkl~Lr~~l~~~e~----e~~e--~~~IqeleqdL~a~~e 359 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQP---LLQKKLQLREELKNLET----EDEE--IRRIQELEQDLEAVDE 359 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcccc----hHHH--HHHHHHHHHHHHHHHH
Confidence 3556778889999999999999999998876543 22233333333322111 1111 3466677777777766
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q psy114 565 ELKKEKTNSAALKNQADSVGK 585 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~ 585 (609)
+..+.+...+.|.+..+.+.+
T Consensus 360 ei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCc
Confidence 666655555555555555533
No 160
>KOG0161|consensus
Probab=75.79 E-value=28 Score=45.33 Aligned_cols=51 Identities=27% Similarity=0.394 Sum_probs=24.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
...+...+++|..+++++.++++..++-..-++|+-..|..||..|.++..
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555554444444444445555555555544444433
No 161
>PRK01203 prefoldin subunit alpha; Provisional
Probab=75.59 E-value=34 Score=31.46 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-----------------CCcch---------hhcc
Q psy114 493 KTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG-----------------DKKDD---------KYQK 546 (609)
Q Consensus 493 ~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~-----------------~~~~~---------~~~~ 546 (609)
.++.|+..+.+..+.+..|.++.+.+-.++.+-.+.++......+ .+.++ --++
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 478889999999999999999999998888776666655221122 00110 0145
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
...+.++.|++++++.++.+.+..+.+.++..|...|
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556788888888887775555555555555554444
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.41 E-value=9 Score=37.57 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=23.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+..+..++..|+.+++..+.+++..++.++.++.....|+.+|+-+-++..+|+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444443
No 163
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.27 E-value=14 Score=30.85 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR-------LLKEHEKVQKVV 601 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr-------l~~e~~~l~~~~ 601 (609)
.++|+.++..+-+...-.+-+++.||.+-..|..|.+. |..|+++|+.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46777777777666666677888888888888888776 777777777543
No 164
>KOG0946|consensus
Probab=75.19 E-value=46 Score=39.18 Aligned_cols=88 Identities=15% Similarity=0.254 Sum_probs=54.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------hhhcC------------CCcchhhcccCHHHH
Q psy114 492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV-------VTEQG------------DKKDDKYQKGDSDEI 552 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~-------~~~~~------------~~~~~~~~~~~~~e~ 552 (609)
..|=.|.+.+.....+++-+-+...++.+.+.+++..+++. ++... .+...++++.+..|.
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~ 746 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSEN 746 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHH
Confidence 33334556677778888888888888888876666665542 22100 111235566677778
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQ 579 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ 579 (609)
++|+.+.....++|.|.+.+++.+|+-
T Consensus 747 k~l~~~q~~l~~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 747 KKLENDQELLTKELNKKNADIESFKAT 773 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888877777777776655555555543
No 165
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=75.01 E-value=15 Score=31.22 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.++++-+++..+.++..+.+++.+.+|++.+..+.++++++-+.-.
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~ 67 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKL 67 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666666666666666666666554433
No 166
>KOG0249|consensus
Probab=74.98 E-value=53 Score=38.18 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=24.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 567 KKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 567 ~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...+.+++.+|||.+.+.++=|||..+.+.|+++++
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334567777777777777777777777777766543
No 167
>PRK14154 heat shock protein GrpE; Provisional
Probab=74.89 E-value=22 Score=35.44 Aligned_cols=44 Identities=7% Similarity=0.216 Sum_probs=34.4
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKE 586 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e 586 (609)
-+...+..++++|++++++.++.+..+.+|++.+||.++.-..+
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~ 95 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKAD 95 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999888888889999888876554333
No 168
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.82 E-value=23 Score=31.02 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=36.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEK---TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~---~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
-..+..+++.|+.+-....+++.+.. .+++.++.++..+..+...+-++..+++.++.
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666554433 36777777777777777777777766666554
No 169
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=74.72 E-value=52 Score=30.27 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q psy114 585 KEYDRLLKEHEKV 597 (609)
Q Consensus 585 ~eydrl~~e~~~l 597 (609)
+|||.|.+...+.
T Consensus 115 ~eyd~La~~I~~~ 127 (139)
T PF05615_consen 115 EEYDALAKKINSQ 127 (139)
T ss_pred HHHHHHHHHHhcC
Confidence 3888887765543
No 170
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.46 E-value=11 Score=33.62 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
..+..|++++...- +++.+||++...+..|=-+|.-|+++|+..+..
T Consensus 8 d~l~~le~~l~~l~-------~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 8 DALDDLEQNLGVLL-------KELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554 488899999999999999999999999887763
No 171
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.45 E-value=33 Score=39.01 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy114 122 LIAQQANLLAQNEASMNQARQAAVAAQALLDGP 154 (609)
Q Consensus 122 li~~~~~l~~~~~a~~kqa~~a~~~a~~~~~~~ 154 (609)
+|.++-.-........++|+..++.++.-..+.
T Consensus 70 ~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~ 102 (522)
T PF05701_consen 70 TVEELKLKLEKAQAEEKQAEEDSELAKFRAKEL 102 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Confidence 344443333444455566766677666555433
No 172
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.43 E-value=24 Score=41.66 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|++.|+.|.++|..--+.+....+..+.+++
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666555555555554444444333
No 173
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=74.37 E-value=44 Score=27.73 Aligned_cols=31 Identities=10% Similarity=0.297 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+...+++..+.|...|+.|.+...+-+..|
T Consensus 73 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 73 EDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4567778888888888888877766655554
No 174
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.25 E-value=48 Score=33.16 Aligned_cols=38 Identities=5% Similarity=0.154 Sum_probs=21.8
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLL 523 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~ 523 (609)
.+...|..+-..++..++..-.+++|.+.+...+.+|-
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQ 72 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666666666666666666666654
No 175
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.18 E-value=94 Score=30.85 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
+..+++.|+.++......+.+.+..+..|+.+.+.+..+.+-|.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 176
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.93 E-value=18 Score=29.84 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl 590 (609)
++..++++.+.+.++.+.|
T Consensus 48 ~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333
No 177
>KOG2751|consensus
Probab=73.85 E-value=13 Score=40.47 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=28.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
.|++.|..++++|+++-++.+..|.+.+...+.+-.+.....+||.
T Consensus 190 ~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~ 235 (447)
T KOG2751|consen 190 EEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYN 235 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666566666666663
No 178
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=73.49 E-value=35 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...|-|-+.|.+||.+.+.+++++|....
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999997654
No 179
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.45 E-value=16 Score=43.67 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
.....++..||..|...+...+..+..++...+.+++.-++-+...+
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~ 553 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEME 553 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555555555555555555555544444333333
No 180
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=73.39 E-value=17 Score=41.62 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=31.8
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy114 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGK 585 (609)
Q Consensus 542 ~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ 585 (609)
..++.+..+|+++|++|.+...++.+.+.+|++..++|.++..+
T Consensus 211 p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~ 254 (555)
T TIGR03545 211 PLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLA 254 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35666778888999999888877777776666666666555543
No 181
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.31 E-value=26 Score=40.98 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=39.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..++.+++|.+++-+.+++++++|.+..+..+ -+...+..|.+..+-+.+.+|-+|+
T Consensus 462 k~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d---~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 462 KVIENQKEENKRLRKMFQEKDQELLENKQQFD---IETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44566678888888888888887777655433 2455666677777777777776665
No 182
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=73.24 E-value=17 Score=34.36 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE-HEKVQK 599 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e-~~~l~~ 599 (609)
...++.|++|+++...++++....+..|++.++.+.+|+.+..++ |.-|+.
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 445667777777777777777789999999999999999999888 666664
No 183
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=73.16 E-value=8.5 Score=32.58 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKT----NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~----~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+..++++|+++.++.++++...++ +.+...+.==.+..||+.+.|=-+.|=+.++
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA 63 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIA 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445556666655555544444333 2332223333344555555444444444443
No 184
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=73.08 E-value=34 Score=35.82 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy114 582 SVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 582 ~l~~eydrl~~e~~~l~ 598 (609)
.+..||+|+++...+.|
T Consensus 258 ~~~~e~e~~l~~k~~eq 274 (297)
T PF02841_consen 258 QLLQEQERLLEQKLQEQ 274 (297)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555544444333
No 185
>KOG0979|consensus
Probab=72.99 E-value=22 Score=42.72 Aligned_cols=49 Identities=24% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.-.++...++++.++.++.+.+|++++...++-.+..++.-.+|..++
T Consensus 308 ~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 308 EKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334455566667777788888899998888888888888888888776
No 186
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.65 E-value=28 Score=39.51 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=54.1
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCC---cchhhcccCHHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK---KDDKYQKGDSDEIKRLK 556 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~---~~~~~~~~~~~e~~~lk 556 (609)
..+.+..+..+|..|-.+++...+..++++.|. ++++.+.. .......+ ........+.+-.+-+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~--------~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALA--------KFLEDIRE---GLTEPIKDSAKRNEPDLKEWFQAFDFNG 137 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhh---hhccccccccccCCCCHHHHHHHHHHHH
Confidence 456788888888888888888888777777554 44444322 01000011 11112233444444455
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy114 557 EKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 557 ~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
+++++...++.+.+.+++.++++.+.|.+|.++|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555555555555544443
No 187
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=72.62 E-value=33 Score=36.28 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=81.3
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc----chhhcccCHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK----DDKYQKGDSDEIKRL 555 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~----~~~~~~~~~~e~~~l 555 (609)
|...|..+..+...++.+.+.+......++|.++........+..|+.+...+ ..+... ....++.+++|...+
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~--k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILA--KSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999988888887777543221 111011 113345555555555
Q ss_pred HHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 556 KEKLSKTEEELKK-EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 556 k~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+-+.+.+++.. -+..+..+..+.+.-....+.+.+|+..|+..+.
T Consensus 98 ~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK 145 (309)
T PF09728_consen 98 AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLK 145 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 4444444444433 3556667777777777777778888887776654
No 188
>PHA02047 phage lambda Rz1-like protein
Probab=72.57 E-value=12 Score=32.35 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
++.+.|+.+|+..+..+..-++.+.+|+-++|.-.+|.++-+++|+.
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~ 80 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555556666666666666678999999999999999998887754
No 189
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=72.50 E-value=99 Score=31.38 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
..+++||...+++..++..+++.+....=++.+.+..+|..-+..
T Consensus 170 ~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~ 214 (239)
T cd07658 170 DKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRK 214 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999998999999999998888889998888765443
No 190
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.47 E-value=35 Score=43.68 Aligned_cols=6 Identities=0% Similarity=-0.280 Sum_probs=2.8
Q ss_pred eEEEec
Q psy114 213 LLCAFT 218 (609)
Q Consensus 213 ~~C~F~ 218 (609)
+.+.+|
T Consensus 29 ~~~l~G 34 (1486)
T PRK04863 29 VTTLSG 34 (1486)
T ss_pred eEEEEC
Confidence 444444
No 191
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.42 E-value=78 Score=34.83 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 575 ALKNQADSVGKEYDRL 590 (609)
Q Consensus 575 ~lkkQ~~~l~~eydrl 590 (609)
.|+.+...|.++--++
T Consensus 228 eL~~~~~~L~~~Ias~ 243 (420)
T COG4942 228 ELRANESRLKNEIASA 243 (420)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3333333333333333
No 192
>KOG2991|consensus
Probab=72.33 E-value=43 Score=34.13 Aligned_cols=48 Identities=31% Similarity=0.473 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~kk~ 609 (609)
+.++++.++....-+..|..+.+.-.+|..||.++++.+...+ +|||+
T Consensus 266 m~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav---~d~~~ 313 (330)
T KOG2991|consen 266 MEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV---GDKKD 313 (330)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccc
Confidence 4444555555566666788888888899999977766655432 45553
No 193
>KOG0964|consensus
Probab=72.31 E-value=52 Score=39.62 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=47.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.++.+..|++.++.+++++.+++++-+.++...|.+.+.+..+|-.+..++.+++.
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999998888777777777664
No 194
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.30 E-value=59 Score=34.24 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=13.7
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALK 509 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~ 509 (609)
+.+..++.+|..+-.+++...+..+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek 47 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEK 47 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5666666666655555554444444
No 195
>KOG0976|consensus
Probab=72.13 E-value=49 Score=38.87 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHhhhhHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy114 496 EELKKEKTNSAALKSQADSVGKEYDRLLKE-HEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA 574 (609)
Q Consensus 496 ~qla~~~~~~ea~~kQa~sa~~~ak~~~~e-~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~ 574 (609)
+++..+......-..+|.+-.+.|.+|++. |.+++...+.- .-+....+-+++-+...+.+++|+-.-++.|+.
T Consensus 294 k~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadi-----rc~LlEarrk~egfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 294 KELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI-----RCALLEARRKAEGFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence 333333344444456677777777777643 33333211000 000000011122222222222232333445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 575 ALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 575 ~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++.--++-..|-.+|+++-.++|.|++
T Consensus 369 ~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 369 SIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777777777765
No 196
>PHA02562 46 endonuclease subunit; Provisional
Probab=72.01 E-value=29 Score=39.45 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQ 579 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ 579 (609)
++++..+.+....++...+.++..++++
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333333333333333333333
No 197
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.01 E-value=51 Score=32.28 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=32.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKE-K---TNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~-~---~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+.+++++|+++++.+.+++.+. + ..++.|+++...+..+-+|-.|-.--|+.
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455555666665555555532 1 24667778788888888887776666554
No 198
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.96 E-value=43 Score=42.17 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=29.3
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
.+..++..+-.++....+..+++.++....++..+....+-.....
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 649 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ 649 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666777777777777766665555444433
No 199
>PRK03918 chromosome segregation protein; Provisional
Probab=71.83 E-value=57 Score=39.40 Aligned_cols=6 Identities=0% Similarity=-0.142 Sum_probs=2.4
Q ss_pred eEEEec
Q psy114 213 LLCAFT 218 (609)
Q Consensus 213 ~~C~F~ 218 (609)
+.|.+|
T Consensus 25 ~~~i~G 30 (880)
T PRK03918 25 INLIIG 30 (880)
T ss_pred cEEEEc
Confidence 334444
No 200
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.83 E-value=36 Score=43.37 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=22.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
..+..+++++..+++...+++.+++.+++.+++|.+.+.+|++.|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 279 DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555555555555555444444
No 201
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.82 E-value=55 Score=36.19 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTE-EELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 552 ~~~lk~~l~~~~-~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
++.||.||++.. .+|.-.++|.++..-+--.|+.|+++--+|+-+
T Consensus 465 LQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ 510 (527)
T PF15066_consen 465 LQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLE 510 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445566666555 456666667777777777777777766544433
No 202
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=71.74 E-value=53 Score=33.69 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
...+++|++.++++...++.+++++....-.+...+...|.+-+.+
T Consensus 166 ~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~ 211 (258)
T cd07655 166 SPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQ 211 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3578999999999999999999888887766677777777665443
No 203
>KOG0999|consensus
Probab=71.65 E-value=12 Score=41.99 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=47.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHh-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKE-K------TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~-~------~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+.++.||+.|-.||++.+.+..+| + .+.++||+|.+.|..|||-.-.|..+++..+.
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888887765554 2 36789999999999999999999888876654
No 204
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.34 E-value=80 Score=31.47 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 556 KEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.++..+.-.|++++-.+.+|.++.++-.+|.+.|..=...|=.
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556677777788888888888887777655554543
No 205
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.19 E-value=35 Score=40.52 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=60.4
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhh-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTN-------SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIK 553 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~-------~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~ 553 (609)
.+.|..+..++..+-.+++.+... .-+++.|.+.+.+.-+.-+. .....+... -+.....++.+..+++
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~---~~~~~~~~~-~~~a~~~~~~L~~~l~ 362 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQ---KITKSLLMQ-ADAAQARESQLVSDVN 362 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 467777777777777766655442 23344444444433222111 110000000 0000112223334444
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+++.++.+ +-..+.++..|+.+++...+-|+.|++.+++.+-+.
T Consensus 363 ~~~~~~~~----~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 363 QLKAASAQ----AGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHh----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443332 234578888999999999999999999999887543
No 206
>KOG0972|consensus
Probab=71.04 E-value=37 Score=35.24 Aligned_cols=103 Identities=14% Similarity=0.217 Sum_probs=56.7
Q ss_pred HhhhhHHHHHHHhhhhHHHHHHHHHHHH-HHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114 500 KEKTNSAALKSQADSVGKEYDRLLKEHE-KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578 (609)
Q Consensus 500 ~~~~~~ea~~kQa~sa~~~ak~~~~e~~-~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk 578 (609)
....+|+.+++-.+++...++-|++.-- ....++++- ..-++.+..+++-|-.+.+.+..+|...+-...++..
T Consensus 227 ~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI-----~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~ 301 (384)
T KOG0972|consen 227 LHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKI-----ASREKSLNNQLASLMQKFRRATDTLSELREKYKQASV 301 (384)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456777888888888888888774321 112222110 1123444444555544444444444433222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy114 579 QADSVGKEYDRLLKEHEKVQKVVTEQGDK 607 (609)
Q Consensus 579 Q~~~l~~eydrl~~e~~~l~~~~~~~~~k 607 (609)
-.+.-..+.|+.++|.+++.+++++.|.|
T Consensus 302 gv~~rT~~L~eVm~e~E~~KqemEe~G~~ 330 (384)
T KOG0972|consen 302 GVSSRTETLDEVMDEIEQLKQEMEEQGAK 330 (384)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23445677789999999998888855543
No 207
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.98 E-value=14 Score=32.90 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhh
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQAD 513 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~ 513 (609)
.++..|-.++..+.+..+++|+|..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554443
No 208
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.86 E-value=14 Score=40.94 Aligned_cols=47 Identities=9% Similarity=0.197 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 556 KEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+...++++++|++.+.|++.|.+|-+.+..+.+.|-+|++.|+.|++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555567777777777777777778888888877764
No 209
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=70.78 E-value=37 Score=33.41 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q psy114 566 LKKEKTNSAALKNQADSVGKE 586 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~e 586 (609)
|+..+.|+++++.|.++|..=
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESH 182 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566888999999988543
No 210
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.77 E-value=86 Score=30.80 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=10.2
Q ss_pred hHHHhhhhhHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKK 500 (609)
Q Consensus 484 I~~i~~~l~~li~qla~ 500 (609)
+..++.||.+|++-...
T Consensus 88 V~~l~~RL~kLL~lk~~ 104 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDD 104 (190)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 55677777766554443
No 211
>KOG0999|consensus
Probab=70.63 E-value=31 Score=38.75 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=21.6
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy114 503 TNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQ 536 (609)
Q Consensus 503 ~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~ 536 (609)
...+++++|-+.....++..--|-+.+++++.+.
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777666666666666666665543
No 212
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.55 E-value=39 Score=33.08 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhhhhHHHHH----HHhhhhHHHHHHHHHHHHHH--HHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALK----SQADSVGKEYDRLLKEHEKV--QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~----kQa~sa~~~ak~~~~e~~~l--~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~ 564 (609)
+..||+|....=+..+.+- .+...+-.+++.+.+..-.. ++++ + .......+..+++.|+++.++..+
T Consensus 68 F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l-----~-~e~~~~~l~~~i~~L~~e~~~L~~ 141 (189)
T PF10211_consen 68 FDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKAL-----Q-AEQGKQELEEEIEELEEEKEELEK 141 (189)
T ss_pred HHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777666555444443 23333444444444332111 1111 1 112345677788888888888888
Q ss_pred HHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy114 565 ELKKEKTNSAALKNQADS-VGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~-l~~eydrl~~e~~~l~~~ 600 (609)
++...++..++++|..+. ...+..+..+|.+.|+.+
T Consensus 142 ~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 142 QVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877764 566667777777777653
No 213
>PF15294 Leu_zip: Leucine zipper
Probab=70.42 E-value=41 Score=34.92 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=25.7
Q ss_pred HHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q psy114 499 KKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE 535 (609)
Q Consensus 499 a~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~ 535 (609)
..+.+-++.++..-.+.+..|-..|+|+.+++..+.+
T Consensus 135 ~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~ 171 (278)
T PF15294_consen 135 DRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKE 171 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667777777777777777788888777765544
No 214
>KOG4571|consensus
Probab=70.23 E-value=22 Score=36.96 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
++|-|.|..|++.+++ .=+.||.|++.+.+|.++|.+
T Consensus 247 Rae~E~l~ge~~~Le~-------rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEK-------RNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555443 456778888888888877744
No 215
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=70.14 E-value=37 Score=35.92 Aligned_cols=12 Identities=0% Similarity=-0.194 Sum_probs=6.4
Q ss_pred ChhhHHHhhhhh
Q psy114 481 SDEIKRLKEKLS 492 (609)
Q Consensus 481 ~~~I~~i~~~l~ 492 (609)
.+|.-.|..|=.
T Consensus 52 ~gwff~i~~re~ 63 (401)
T PF06785_consen 52 LGWFFAIGRREK 63 (401)
T ss_pred hHHHHHhhHHHH
Confidence 456655555443
No 216
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.12 E-value=98 Score=33.22 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=29.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEEL--------KKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l--------~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
-....++.+++.|+.++++..+.+ .....+.+.|+...+-..+-|+.++..+++++
T Consensus 242 P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666655544332 22244555555666666666666666655554
No 217
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=69.88 E-value=53 Score=33.86 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=61.9
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
-++-....+.+++.+|........+-.+..+-.-+-.++|++|+..+..++. ...++||.+....
T Consensus 86 L~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~---------------~r~~elk~~~~~~ 150 (268)
T PF11802_consen 86 LLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLN---------------KRHEELKNQVETF 150 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhcc
Confidence 4556666778888888877666655555555555667778877766655542 2333333333222
Q ss_pred HHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 563 EEE--LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 563 ~~~--l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+. +..-+..+..+|++-+.|...-+.-+++|=-+..
T Consensus 151 se~rv~~el~~K~~~~k~~~e~Ll~~LgeFLeeHfPlp~ 189 (268)
T PF11802_consen 151 SESRVFQELKTKIEKIKEYKEKLLSFLGEFLEEHFPLPD 189 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 221 2333445667777777888878888888876644
No 218
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.68 E-value=17 Score=34.56 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKN---QADSVGKEYDRLLKEHE 595 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk---Q~~~l~~eydrl~~e~~ 595 (609)
+.++.+++.++...+..|..+...++.||+ =.|.|.++++.|-.++.
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444 23334444444443333
No 219
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.61 E-value=33 Score=41.09 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
...|..-...+..=-.++..+....++.+++.+...+.+.+..++.+.+++.+
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333322233444444444444455555555555555554444443
No 220
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.54 E-value=80 Score=27.90 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.+..+.+|.+.+.+.+..+-++
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444333
No 221
>KOG0239|consensus
Probab=69.48 E-value=62 Score=38.00 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=40.0
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHhhhcCCC--cchhhcccCHHHHHHHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE---KVQKVVTEQGDK--KDDKYQKGDSDEIKRLKEKLSK 561 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~---~l~~~~~~~~~~--~~~~~~~~~~~e~~~lk~~l~~ 561 (609)
....+..+..+|...+++.+..-.+.+++....+.+.+... .++.....-... ...++++.|..++++||+++..
T Consensus 180 ~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~ 259 (670)
T KOG0239|consen 180 LESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKE 259 (670)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666677777777677775555555544322 111111100000 0113345555666666655555
Q ss_pred HHHHHHHh
Q psy114 562 TEEELKKE 569 (609)
Q Consensus 562 ~~~~l~~~ 569 (609)
.+....+.
T Consensus 260 l~~~~~~~ 267 (670)
T KOG0239|consen 260 LNDQVSLL 267 (670)
T ss_pred HHHHHHHH
Confidence 55544443
No 222
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.38 E-value=1.5 Score=51.70 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 503 TNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 503 ~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
...+.+++|.+...+--..||+.+..|...+.... .....+..++.++.+|+.++.+...+..+.+-+...|+...+.
T Consensus 325 ed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~--~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 325 EDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR--ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655544443211 1123344566667777777766666666666777788888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy114 583 VGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 583 l~~eydrl~~e~~~l~~ 599 (609)
+.+|.++|..|...|+.
T Consensus 403 l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 403 LEEEKERLQEERDSLRE 419 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777777665
No 223
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.35 E-value=22 Score=29.36 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=14.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lk 577 (609)
+++|+.+++++++++....+++.+.+.+++.|+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 224
>KOG4603|consensus
Probab=69.31 E-value=1.1e+02 Score=29.41 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=47.7
Q ss_pred HHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH-H
Q psy114 497 ELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA-A 575 (609)
Q Consensus 497 qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~-~ 575 (609)
+|+.+-....++..+.++....+.-.=.|-..|.+++. ...+.+++.+|+++.+.-.+.|++-++-.. .
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt----------~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT----------TEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 44555566667777777777776655555555555541 223456666777776666665554322111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy114 576 LKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 576 lkkQ~~~l~~eydrl~~e~~~ 596 (609)
-++--++.-++|.+-..+-.+
T Consensus 150 tpedk~~v~~~y~~~~~~wrk 170 (201)
T KOG4603|consen 150 TPEDKEQVYREYQKYCKEWRK 170 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 122333444566555444433
No 225
>PRK10698 phage shock protein PspA; Provisional
Probab=69.31 E-value=73 Score=32.02 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=20.7
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLL 523 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~ 523 (609)
.+...+..+-..++..+++...+.+|.+.+...+.+|-
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555556666666666666555554
No 226
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.25 E-value=94 Score=28.55 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
-++-|++.++..++ .++.|+++.+.+.++++.+.+..++++.+
T Consensus 95 A~~~l~~~~~~l~~-------~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 95 AIEILDKRKEELEK-------ALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444 45555555555555666666665555543
No 227
>KOG3990|consensus
Probab=69.24 E-value=8.1 Score=39.01 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=26.3
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk 578 (609)
..+..|++||..||+-|.++++.+-..+..+..||-
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 446778888888888888888777666666666654
No 228
>KOG4403|consensus
Probab=68.97 E-value=18 Score=39.32 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAA 575 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~ 575 (609)
.|++..++||+....+|++||.++++
T Consensus 302 ~e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 302 VENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678999999999999998875
No 229
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.96 E-value=58 Score=33.00 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=27.3
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
++++.+...++.++.+-.+..+...+...++..||.+.+.+.+||-
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344455555555555555555555555566677777777766653
No 230
>KOG0976|consensus
Probab=68.96 E-value=57 Score=38.36 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=10.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~ 564 (609)
.+++.+..++.+|..+|..+..
T Consensus 141 telE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 141 IEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred HHHHhhHHHHHHHHHHHhhhhH
Confidence 3344455555555555544443
No 231
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.68 E-value=86 Score=37.22 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=6.2
Q ss_pred ccCHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSK 561 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~ 561 (609)
++.++|++.++.+++.
T Consensus 635 r~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 635 REFKKELERMKDQLQD 650 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 232
>PRK00106 hypothetical protein; Provisional
Probab=68.65 E-value=38 Score=38.64 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
|.++.++|.+.+.+++..++..+...++++++.++.+++..
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~ 153 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEE 153 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555556666666666666666666666666543
No 233
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.57 E-value=87 Score=37.41 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+++..|.+|.+....++......++.+.-+.+.+..++|..-++..+|+..|+
T Consensus 113 ~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 113 QEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444445555555555555666666666666665554
No 234
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.42 E-value=53 Score=38.40 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSV--GKEYDRLLKEHEKVQK 531 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa--~~~ak~~~~e~~~l~~ 531 (609)
++..++.+++.+....+.+.+|-..+ .+..+++.++-+.+++
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443 2444454444444433
No 235
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.39 E-value=23 Score=39.29 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=11.4
Q ss_pred hhHHHHHHHHhhhhHHHHHHHh
Q psy114 491 LSKTEEELKKEKTNSAALKSQA 512 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa 512 (609)
|.||+.+++.+++..+.+.+|-
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N 82 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISEN 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555443
No 236
>KOG0978|consensus
Probab=68.17 E-value=44 Score=39.10 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy114 111 FLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRG 156 (609)
Q Consensus 111 fL~lvi~r~~~li~~~~~l~~~~~a~~kqa~~a~~~a~~~~~~~~~ 156 (609)
+++....++-.+-.++..+....+..++-.....+.+-.+++....
T Consensus 84 k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 84 KISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555666788888888888888888888777777777777766655
No 237
>PRK12704 phosphodiesterase; Provisional
Probab=68.08 E-value=33 Score=38.99 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
|+++.+.|.+.+.+++..++..+...++++.+.++.+++..
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555666666666666666555543
No 238
>KOG4674|consensus
Probab=68.01 E-value=56 Score=42.19 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
..+..+..+|-.....+++++.++++||+.-+-+..--+||..|+++
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~ 770 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEK 770 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666677777777877777655444333333333333
No 239
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=67.92 E-value=88 Score=27.74 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=33.0
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
.+..+|.+|-+.+.....+.+-+.+|-+....+-..+..+++..
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888777777777766666443
No 240
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.76 E-value=84 Score=34.01 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 558 KLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 558 ~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
++.+...++..++.+++.++.+.+.
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 241
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.76 E-value=32 Score=34.34 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=25.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
++...|.+++++|+.++++..+.|+..+.+..-|...-..|--||.+|.+...+|
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3344455566666666666555444444443333333333333444443333333
No 242
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=67.68 E-value=1.2e+02 Score=29.65 Aligned_cols=85 Identities=11% Similarity=0.184 Sum_probs=50.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy114 506 AALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGK 585 (609)
Q Consensus 506 ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ 585 (609)
...+.-++.+..+++.-..+-+.|+..+... .........-.+....+|.++..=|..+++.++.|.+|...-..
T Consensus 91 ~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a-----~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 91 QQAQANAQAAQRAAQQAQQQLETLKAALKAA-----QANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555444544555444221 11122223334556677888877788888889999999888888
Q ss_pred HHHHHHHHHH
Q psy114 586 EYDRLLKEHE 595 (609)
Q Consensus 586 eydrl~~e~~ 595 (609)
||++..+--.
T Consensus 166 D~~~tk~aA~ 175 (188)
T PF05335_consen 166 DYEKTKKAAY 175 (188)
T ss_pred HHHHHHHHHH
Confidence 8888755433
No 243
>PRK11281 hypothetical protein; Provisional
Probab=67.58 E-value=64 Score=40.14 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH---HHHHHHHHHHH----HHHhhhcCCCc---chhhcccCHHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE---YDRLLKEHEKV----QKVVTEQGDKK---DDKYQKGDSDEIKR 554 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~---ak~~~~e~~~l----~~~~~~~~~~~---~~~~~~~~~~e~~~ 554 (609)
..+..++..+-.+|....++.++..+|.-+++.. |+.-|.++..- ...++...... .+.....+..|..-
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 4466666666666666666666665555544432 22222222221 11121111111 11234556777777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 555 LKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 555 lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|+.+.+..+.+|..+.+-.+-.++|-+-+.++++++-.+.+.||+.+.
T Consensus 204 l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888778888899999999999988887777777654
No 244
>PRK14155 heat shock protein GrpE; Provisional
Probab=67.42 E-value=20 Score=35.70 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=36.3
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKE 586 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e 586 (609)
.+.+.+..++++|++++++.++.+..+.+|++.+||.++.-..+
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888999999999999999999999999999977654433
No 245
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.39 E-value=28 Score=38.43 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=30.9
Q ss_pred hhcccCHHHHHHHHHHHHHHH-------HHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTE-------EELKKE---KTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~-------~~l~~~---~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
..+++++.|+++.++|++.+. +.+.+. -.+++-|-..-+.|.+|.|+..-+..+|.+.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334555555555554444332 222221 23555555556667777777666666665543
No 246
>PRK14145 heat shock protein GrpE; Provisional
Probab=67.36 E-value=12 Score=36.85 Aligned_cols=41 Identities=2% Similarity=0.015 Sum_probs=31.0
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 542 ~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
..+++.+.++++++++++++..+.+..+.+|++..||.++.
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888888888888885543
No 247
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.35 E-value=12 Score=36.84 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=19.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKK----EKTNSAALKNQADSV 583 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~----~~~~~~~lkkQ~~~l 583 (609)
+..|+.|+.+|+++|.+.+++..+ ...+...+|+|.|+|
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL 140 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH
Confidence 344444555555555444444333 122334457777777
No 248
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.34 E-value=72 Score=36.73 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=26.8
Q ss_pred hhHHHhhhhhHHHHHHHHhhhh----------HHHHHHHhhhhHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTN----------SAALKSQADSVGKEYDRLL 523 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~----------~ea~~kQa~sa~~~ak~~~ 523 (609)
.+..+......|..++..+..+ ...+.+|.+...+..+...
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777 5666666666666555443
No 249
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.98 E-value=77 Score=40.48 Aligned_cols=54 Identities=7% Similarity=0.179 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+..+++.+.+.+.++.+++.+++...+.++.+.+....++++..++.+.....+
T Consensus 338 l~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 338 ARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555556666666666666666655554444433
No 250
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=66.93 E-value=13 Score=31.29 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=35.8
Q ss_pred EecccCCCccccCCceEEEeecCCCCCCCceEEEecCCCcccccccee-cCCceeecCCCCC
Q psy114 183 RSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIK-QTNGVKCATPPTK 243 (609)
Q Consensus 183 ~~~~~P~n~s~~~~~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a~~-~~~~v~C~sP~~~ 243 (609)
|..+.|++=+...-..|+|.=.|+ .+++.|.||+.. .-+++ ....+.|.+||..
T Consensus 3 I~ai~P~eG~~tGGt~VtI~GenF---~~gl~V~FG~~~----~w~e~isp~~i~~~tPP~~ 57 (85)
T cd01175 3 IKAISPSEGWTTGGATVIIIGDNF---FDGLQVVFGTML----VWSELITPHAIRVQTPPRH 57 (85)
T ss_pred ccEecCCCCcccCCeEEEEECCCC---CCCcEEEECCEe----EEEEEeccceEEEecCCCC
Confidence 556788777776666777654453 367999999753 12233 4566899998753
No 251
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.92 E-value=32 Score=28.30 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
++|+.++..+-+.....+.+++.||.+...|..|-+.|.+|+++|+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444443333444444444444444444444444444444
No 252
>KOG2264|consensus
Probab=66.87 E-value=23 Score=39.82 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
|..|++++..++++.++.+..++.|+++||.-.|+-+..|..|.+.+
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34444444444444444455555678888877777777777775543
No 253
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=66.84 E-value=9.9 Score=39.83 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=26.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKK--EKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~--~~~~~~~lkkQ~~~l~~eydrl 590 (609)
.|+.+|++|+++|+.|++.++.+..+ -..+++.+..|++.+.+-.|+.
T Consensus 39 ~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 39 MENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665554443 2334555656666666666664
No 254
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=66.68 E-value=41 Score=34.60 Aligned_cols=103 Identities=16% Similarity=0.282 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHH-HHhhhhhhhhhhhhcccchhH--HHHHHHHHHHHHHHHHHHHhccCcccc-----
Q psy114 8 IATVLYFEMAFMLLLILPILSTQR-LHKILKSKFVQGVKTQAGWYF--GCILVILSLFFLDAIREMRKYASPEVK----- 79 (609)
Q Consensus 8 v~~~L~~E~~~~~lL~lP~p~~~r-~~~~~~~~~~~~~~~~~~~~~--~~v~~~l~~lf~Ds~~~~~k~~~~~~~----- 79 (609)
+..||..-|.+....++ -|...- ..+++....... .+.+++ .++++|.+++++-++.-++|......+
T Consensus 35 LglFl~~Hm~~~ssil~-G~~afn~va~f~E~~~~~~---~g~p~~~sl~~~~I~l~~l~Ha~lalrk~P~n~~q~~~~r 110 (258)
T PRK13553 35 LGLFMWAHMFFVSTILI-SDDAMYKVAKFFEGSFFFK---AGEPALVSFVAAGVILIFVVHAFLAMRKFPINYRQYQIFR 110 (258)
T ss_pred HHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhhCcccc---CCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 45566666665555444 333332 235565433321 122222 344566666777788877776432100
Q ss_pred --cccCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 80 --EEAHGHLDAEMQNNMKLFRAQRNFYISGFSLFLWLVIRQIIQLIA 124 (609)
Q Consensus 80 --~~~~~~~~~~~~~~~~~f~aQRN~YisGf~LfL~lvi~r~~~li~ 124 (609)
...-.|.+ .++|+-|| +|||++|+...+ -+..++.
T Consensus 111 ~h~~~m~H~D------T~lW~~Q~---iTG~ilf~~~~~-Hl~~i~~ 147 (258)
T PRK13553 111 THKHLMKHGD------TSLWFIQA---FTGFAMFFLASV-HLYVMLT 147 (258)
T ss_pred HHHhhccCCc------cchHHHHH---HHHHHHHHHHHH-HHHhhhc
Confidence 00012222 25899997 999999987544 3444443
No 255
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=66.53 E-value=28 Score=27.52 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~ 591 (609)
+.+.|+++.+.|..+++.|.
T Consensus 41 en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 41 ENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 256
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.52 E-value=65 Score=34.14 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=22.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA-ALKNQADSVGKEY 587 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~-~lkkQ~~~l~~ey 587 (609)
+|+..+...++.++.|..+++++..+..+|+. ++.-| ..|+.||
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq-q~L~~ey 185 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ-QELNDEY 185 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 44455555556666666665555544444443 33332 3355555
No 257
>KOG0972|consensus
Probab=66.39 E-value=29 Score=35.93 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhh--------------HHHHHHHHHHHHHHHHHhhhcCC
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSV--------------GKEYDRLLKEHEKVQKVVTEQGD 538 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa--------------~~~ak~~~~e~~~l~~~~~~~~~ 538 (609)
|=..|.+||+.++..--++..|-..+ ++.-...|+|.+.+|+..++.|.
T Consensus 267 REK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~ 329 (384)
T KOG0972|consen 267 REKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGA 329 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456666666665544443333222 33334456666666666655553
No 258
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=66.11 E-value=1e+02 Score=31.19 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGK 585 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ 585 (609)
..+++|++..+.++..+..+++++...-=..+....+
T Consensus 160 ~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~ 196 (251)
T cd07653 160 KADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQR 196 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888887777777777776544444444433
No 259
>KOG0980|consensus
Probab=66.09 E-value=95 Score=37.08 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
++...+.++|-+.+..-|-.|-.+|..
T Consensus 416 e~~~l~~e~ry~klkek~t~l~~~h~~ 442 (980)
T KOG0980|consen 416 ENKALAAENRYEKLKEKYTELRQEHAD 442 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 260
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=65.83 E-value=45 Score=37.92 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 556 KEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
..+|++++++|.+.+.+++..+++.+.+.+|++++.++.
T Consensus 96 ~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~ 134 (514)
T TIGR03319 96 MESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQ 134 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666666655443
No 261
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.61 E-value=16 Score=31.52 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=22.8
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
+..++..|-.++..+......+.+|..-+..+.+.+
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777776666555554444
No 262
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.60 E-value=1.1e+02 Score=36.07 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=45.9
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~ 532 (609)
...|.++...|..+=++-+.+.++.+..++|.+.+..+.-..++....|...
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~ 315 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ 315 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999999999999999999999999988888877777653
No 263
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.59 E-value=88 Score=37.21 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=9.9
Q ss_pred hhcccCHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSK 561 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~ 561 (609)
.....++.+++.|++++++
T Consensus 316 P~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555566555555443
No 264
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=65.38 E-value=1.1e+02 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 501 EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 501 ~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
+......+.+...++++..+.+++-.+.+.+..
T Consensus 25 Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~V 57 (120)
T PF14931_consen 25 LKEECKEFVEKISEFQKIVKGFIEILDELAKRV 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666666667777777777776665554443
No 265
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.37 E-value=71 Score=35.19 Aligned_cols=109 Identities=16% Similarity=0.288 Sum_probs=56.7
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhh-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTN-------SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEI 552 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~-------~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~ 552 (609)
.+|.|..+..++..+-.+++.+... .-+++.|.+.+.+.-++-+.+ +...+ ..+...+..+.
T Consensus 252 ~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~---~~~~~--------~~~~~~~~~~~ 320 (444)
T TIGR03017 252 ANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKK---VTSSV--------GTNSRILKQRE 320 (444)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH---HHHHH--------HHHHHHHHHHH
Confidence 3566777777887777777776542 223333433333332221111 11111 01111222333
Q ss_pred HHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 553 KRLKEKLSKTEE---ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 553 ~~lk~~l~~~~~---~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
..|+..+++.++ ++.+.+.+...|+.+.+...+=|+.|++..++.+-
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 23445667778888888888888888888877653
No 266
>PRK14139 heat shock protein GrpE; Provisional
Probab=65.00 E-value=14 Score=36.02 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=31.1
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
.++..+..++++|++++++.++.+..+.+|.+..||..+.
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567788888989988888888888888888886543
No 267
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=64.97 E-value=55 Score=34.47 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+.|..++.+|..|-.+....|.. .+.-+..|.++.+.|.+|-..+-.+..+|+
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr 162 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLR 162 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444443 234455666666666555544444444443
No 268
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.96 E-value=25 Score=28.64 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=13.3
Q ss_pred HhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 500 KEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 500 ~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
+++...+.+..+.+.-..+-+.+..|++..
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~ 38 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSA 38 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444554444443
No 269
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=64.91 E-value=17 Score=30.88 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
|.|..+++++++...+|--.|-.||.+
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 445556666666665555555555443
No 270
>KOG0243|consensus
Probab=64.88 E-value=37 Score=41.28 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+.+.+|++.+.-.+|..++.+|+++++.+
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544
No 271
>PRK01156 chromosome segregation protein; Provisional
Probab=64.80 E-value=91 Score=37.86 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~ 584 (609)
+++..++......+...+..++.+++|.+++.
T Consensus 684 ~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~ 715 (895)
T PRK01156 684 KKSRKALDDAKANRARLESTIEILRTRINELS 715 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333333333333444444433333
No 272
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.69 E-value=33 Score=41.04 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
.-..++..||..|...+...+..+..++...+.+++..++-
T Consensus 513 ~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544444444444444444443333
No 273
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.48 E-value=1.2e+02 Score=31.85 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
..++.-..++++.+..|++-+..+...++.
T Consensus 213 he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 213 HEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444
No 274
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.31 E-value=96 Score=26.84 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy114 512 ADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 512 a~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
.+.....+.++..+++.|+...-.-.+++ -..---.|+..|+..|+..-..+... ....|..|.+.|.+.-..|.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~Ged---L~~Ls~~eL~~LE~~Le~aL~~VR~r--K~~~l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGED---LESLSLKELQQLEQQLESALKRVRSR--KDQLLMEQIEELKKKERELE 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc---ccccchHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666554432221222 11223567778888777654444333 33467778888888888888
Q ss_pred HHHHHHHhhhh
Q psy114 592 KEHEKVQKVVT 602 (609)
Q Consensus 592 ~e~~~l~~~~~ 602 (609)
++|..|+.+++
T Consensus 89 ~en~~L~~~~~ 99 (100)
T PF01486_consen 89 EENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHhc
Confidence 89998888764
No 275
>PRK14163 heat shock protein GrpE; Provisional
Probab=64.25 E-value=17 Score=36.33 Aligned_cols=40 Identities=8% Similarity=0.272 Sum_probs=32.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
.+...+.+++++|++++++..+.+.++.+|++.+||..+.
T Consensus 40 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 40 AATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999999988888889999998886554
No 276
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=64.10 E-value=49 Score=32.93 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=34.9
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
+++|......++..|-.+|..+....+.+.++-.....+...|
T Consensus 22 ~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~ 64 (236)
T PF09325_consen 22 PDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEF 64 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998888888888777666665444
No 277
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=64.02 E-value=1.1e+02 Score=30.30 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=33.8
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
|++|......++..|-.+|+.+.+..+.+.++-.....+...+
T Consensus 2 ~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~ef 44 (216)
T cd07627 2 PDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEF 44 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999988888887776665554444
No 278
>KOG0804|consensus
Probab=63.78 E-value=56 Score=36.00 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSV 583 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l 583 (609)
+..+..|+.|...|
T Consensus 434 d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 434 DEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHhH
Confidence 33344444444433
No 279
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=63.52 E-value=33 Score=37.99 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKK---EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~---~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++..+++.|+.+..+..+++++ ...+.+++++++..+.++...|.++..+++.++.
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554433 1224556666666666666666666666555443
No 280
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.44 E-value=28 Score=27.17 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
..|..+|..|+.++..+..++.....|+.+.|..|++-+..-|
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665555555555555555554444333
No 281
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=63.21 E-value=1.3e+02 Score=29.92 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 492 SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
..++...+.+...+..+..+-+.+++...+...+-++++... +.-.+.+++++.++++.++...+++.
T Consensus 117 ~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~------------~~~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 117 LRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG------------KNRQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555444443332211 01134566666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~ 591 (609)
+.+.+ ++.+.+|.+|.-
T Consensus 185 ~~~~i---s~~~k~E~~rf~ 201 (236)
T PF09325_consen 185 EFEEI---SENIKKELERFE 201 (236)
T ss_pred HHHHH---HHHHHHHHHHHH
Confidence 66544 233445554443
No 282
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.98 E-value=1.8e+02 Score=29.89 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKE-YDRLLKE 593 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e-ydrl~~e 593 (609)
+..+.+++|++..+.....+..+++++....=.+..+++.. |...+.+
T Consensus 158 ~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~ 206 (252)
T cd07675 158 NATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQ 206 (252)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 34567789999999999888888888888666667777777 6655544
No 283
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=62.91 E-value=17 Score=34.64 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy114 583 VGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 583 l~~eydrl~~e~~~l~~~~~ 602 (609)
|.|..|.+.+|.++++++..
T Consensus 71 l~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666655443
No 284
>PRK14151 heat shock protein GrpE; Provisional
Probab=62.85 E-value=25 Score=34.10 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=32.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~ 584 (609)
.....+.+++++|++++++.++.+..+.+|++..||.++.=.
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~ 61 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDV 61 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888888888888888888888766543
No 285
>KOG4643|consensus
Probab=62.81 E-value=97 Score=37.54 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh-------cCCC------------cchhhcccCHHHHHHHHHHHHH
Q psy114 501 EKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE-------QGDK------------KDDKYQKGDSDEIKRLKEKLSK 561 (609)
Q Consensus 501 ~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~-------~~~~------------~~~~~~~~~~~e~~~lk~~l~~ 561 (609)
+......+.+|-......+|+++.|++++...... .... ...++-+.+...+++|++-|..
T Consensus 420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~ 499 (1195)
T KOG4643|consen 420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNN 499 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667777777777777776553211 1000 0012233344446666666666
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 562 TEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 562 ~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
.+.++....+.++-+|.|-.....-|.
T Consensus 500 r~~elsrl~a~~~elkeQ~kt~~~qye 526 (1195)
T KOG4643|consen 500 RDLELSRLHALKNELKEQYKTCDIQYE 526 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555544444443
No 286
>KOG1029|consensus
Probab=62.52 E-value=92 Score=36.69 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
+.+|.++.+.+++.++.-+|++.++.|.+.|..+|+.+
T Consensus 545 q~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 545 QAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34555666666666666677777777777776666443
No 287
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.35 E-value=22 Score=33.95 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=40.1
Q ss_pred HHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHH
Q psy114 497 ELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 497 qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
+++.+......++.|........+.+-.+-..|.... .+..+..++++|++|+++....|..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~----------t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEP----------TNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888887776665554432 1233555666666666666554444
No 288
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=62.12 E-value=69 Score=40.40 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 575 ALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 575 ~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.++.+.+.+..+|+-|.+.|+.++.+
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655543
No 289
>PLN02320 seryl-tRNA synthetase
Probab=62.01 E-value=35 Score=38.49 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.++|+.+++.|.++...|-++..+++.
T Consensus 131 ~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 131 ERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 290
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=62.00 E-value=1.2e+02 Score=30.74 Aligned_cols=112 Identities=15% Similarity=0.243 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc-chhhcccCHHHHHHHHHHHHHHHHHHHH
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK-DDKYQKGDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
.-..++.+.+...+..++++++++.|-...+++..+-+.++.. ....... .......|..++.+...+|......|..
T Consensus 25 ~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~ 103 (240)
T PF12795_consen 25 QALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQ 103 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355777888888888889988888888888888777776554 1111111 1233455666677777777777777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+..+..+....+.....-.......+++..++.
T Consensus 104 ~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 104 ENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777666666666666665
No 291
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.86 E-value=60 Score=37.13 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhHHHHHHHhhhh
Q psy114 494 TEEELKKEKTNSAALKSQADSV 515 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa 515 (609)
..+.+......-+.++.+.++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L 441 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSEL 441 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333
No 292
>COG1422 Predicted membrane protein [Function unknown]
Probab=61.79 E-value=33 Score=33.78 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.3
Q ss_pred hHHHHHH
Q psy114 572 NSAALKN 578 (609)
Q Consensus 572 ~~~~lkk 578 (609)
|..+|||
T Consensus 96 d~~~lkk 102 (201)
T COG1422 96 DMKKLKK 102 (201)
T ss_pred CHHHHHH
Confidence 4445544
No 293
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=61.78 E-value=1.8e+02 Score=29.26 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy114 583 VGKEYDRLLKEHEKV 597 (609)
Q Consensus 583 l~~eydrl~~e~~~l 597 (609)
+..|+++.++|+.+.
T Consensus 125 ~r~e~~~ml~evK~~ 139 (230)
T PF03904_consen 125 VREENKSMLQEVKQS 139 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554443
No 294
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.69 E-value=39 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
..++..|+.+.+.|...|+.++
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554
No 295
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=61.58 E-value=1.3e+02 Score=30.46 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
.....|..+-..++..++..-.+.++.+.+..-+.+|
T Consensus 35 d~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 35 DMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555555544444444
No 296
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.45 E-value=58 Score=30.30 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey 587 (609)
+..+++.++.++...-.+++..+.+...+.++-+.+...|
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3455666666666555544444444444444444444444
No 297
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.20 E-value=1e+02 Score=31.95 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=14.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKE 569 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~ 569 (609)
.+++.|..+++|-|.||+...|.|+..
T Consensus 190 ~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 190 SDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 298
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.08 E-value=87 Score=29.02 Aligned_cols=9 Identities=44% Similarity=0.564 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy114 583 VGKEYDRLL 591 (609)
Q Consensus 583 l~~eydrl~ 591 (609)
..+|.|-|+
T Consensus 82 ~q~EldDLL 90 (136)
T PF04871_consen 82 AQSELDDLL 90 (136)
T ss_pred hhhhHHHHH
Confidence 344444443
No 299
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.07 E-value=91 Score=28.19 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=51.2
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH--HHHHHHHHHHhhhcCCCcchhhcccCHHH-HHHHHHH
Q psy114 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL--LKEHEKVQKVVTEQGDKKDDKYQKGDSDE-IKRLKEK 558 (609)
Q Consensus 482 ~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~--~~e~~~l~~~~~~~~~~~~~~~~~~~~~e-~~~lk~~ 558 (609)
|++-....++..+-.++..+......+..|-.-+..+-+-+ +++....-+..+.--...+ +.+ .+.|+++
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd-------~~e~~~~l~~r 79 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVD-------KTKVEKELKER 79 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhcc-------HHHHHHHHHHH
Confidence 45556666666666666666655555554444433332222 1122222222111001111 222 2344444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
++..+.+++..++..+.++++.+.+...+..++..+
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455555577777777777777777776543
No 300
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.05 E-value=76 Score=35.33 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=10.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
.+..++..++.++.+...++..
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555444443
No 301
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=61.00 E-value=1.9e+02 Score=29.19 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
..+++|++..+++...+..+++++....=.+.+.....|.+=
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~ 193 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESE 193 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999998888888888887776656677776666543
No 302
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=60.95 E-value=25 Score=32.25 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|++.++.+....+-++.|.+|.+|+..|=+.|+.+-+.|+.-++
T Consensus 26 lkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq 69 (139)
T COG4768 26 LKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQ 69 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555556778888888888888888888888777665
No 303
>KOG4364|consensus
Probab=60.91 E-value=77 Score=36.60 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 556 KEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
|+|.++++++-++.+.+.+-||||-+..
T Consensus 306 KKqqkekEkeEKrrKdE~Ek~kKqeek~ 333 (811)
T KOG4364|consen 306 KKQQKEKEKEEKRRKDEQEKLKKQEEKQ 333 (811)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445555555555566677777775544
No 304
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=60.88 E-value=1.1e+02 Score=29.63 Aligned_cols=18 Identities=6% Similarity=0.315 Sum_probs=13.9
Q ss_pred ChhhHHHhhhhhHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEEL 498 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~ql 498 (609)
..|+..+.++|+.+....
T Consensus 65 ~~w~d~~~P~ii~~~~~I 82 (184)
T PF05791_consen 65 KEWLDTIKPQIIDLNQDI 82 (184)
T ss_dssp HHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHH
Confidence 469999999998666555
No 305
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=60.79 E-value=1.2e+02 Score=26.69 Aligned_cols=18 Identities=39% Similarity=0.313 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy114 580 ADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l 597 (609)
|....++.|.|..||++.
T Consensus 84 AK~~l~~l~~lR~eyHkk 101 (103)
T PF07361_consen 84 AKAALKKLDDLRKEYHKK 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 444455556666666654
No 306
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=60.41 E-value=1.3e+02 Score=31.00 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
.-..+++|++..+++...++.+++++.+..=.+.+.....|++-+.
T Consensus 165 ~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~ 210 (258)
T cd07680 165 VTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENME 210 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4467899999999999999999998888666667777777765543
No 307
>KOG4360|consensus
Probab=60.39 E-value=53 Score=36.70 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=60.6
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc--chhhcccCHHHHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK--DDKYQKGDSDEIKRLKEK 558 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~--~~~~~~~~~~e~~~lk~~ 558 (609)
+..+.+++..|...-.++...+.....+..|.-++.+.+|-+.-|++.+...+...++-. ...|.+.+..+..++...
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~ 290 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQM 290 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888899999999999999999999999999888888887664432111 123333333344444444
Q ss_pred HHHHHHHHHHh
Q psy114 559 LSKTEEELKKE 569 (609)
Q Consensus 559 l~~~~~~l~~~ 569 (609)
+.+.+++|+++
T Consensus 291 ~~EaeeELk~l 301 (596)
T KOG4360|consen 291 LHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 308
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=60.01 E-value=2e+02 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~ 530 (609)
.+...-..||++|-. ++-.+.++---+..+++.+++-+....|.
T Consensus 160 ailkqse~lIN~Ls~-rAr~dt~r~Ae~eV~~~eerv~kAs~~L~ 203 (372)
T COG3524 160 AILKQSEKLINQLSE-RARRDTVRFAEEEVQKAEERVKKASNDLT 203 (372)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 566666788888743 33334333222333344445554444443
No 309
>KOG1655|consensus
Probab=59.97 E-value=68 Score=31.47 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 579 QADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 579 Q~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|.|.|+.|...|++...++|..|.
T Consensus 127 ~IedlQDem~Dlmd~a~EiQE~Lg 150 (218)
T KOG1655|consen 127 KIEDLQDEMEDLMDQADEIQEVLG 150 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666665543
No 310
>PRK14143 heat shock protein GrpE; Provisional
Probab=59.94 E-value=19 Score=36.64 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=29.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
.+...+..++++|++++++.++.+.++.+|++.+||..+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888787888888888876544
No 311
>PRK14149 heat shock protein GrpE; Provisional
Probab=59.84 E-value=39 Score=33.20 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=31.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
+...+..+.+++|++++++..+.+..+.+|++.+||-++.
T Consensus 36 ~~~~~~~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~k 75 (191)
T PRK14149 36 EASEKEGEIKEDFELKYKEMHEKYLRVHADFENVKKRLER 75 (191)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567788899999999988888999999999886543
No 312
>KOG0978|consensus
Probab=59.82 E-value=1.2e+02 Score=35.76 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=24.1
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
..+.++..|+-|++..-.-.=+++.--.+++...+.++++-..+
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l 508 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKL 508 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555444
No 313
>KOG4001|consensus
Probab=59.44 E-value=86 Score=30.94 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q psy114 582 SVGKEYDRLLKEHEKVQKVVTEQ 604 (609)
Q Consensus 582 ~l~~eydrl~~e~~~l~~~~~~~ 604 (609)
....|..+|.+-+++|..||+|-
T Consensus 232 k~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 232 KMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667788989999999999864
No 314
>PRK14153 heat shock protein GrpE; Provisional
Probab=59.42 E-value=22 Score=35.01 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=30.4
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
+.+.+..++++|++++++..+.+..+.+|++.+||.++.-
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE 73 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTARE 73 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888888888888888888888888866543
No 315
>PRK14144 heat shock protein GrpE; Provisional
Probab=59.25 E-value=29 Score=34.36 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=30.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
.+...+.+++++|++++++..+.+..+.+|.+..||.++.
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888888888888888888886543
No 316
>PRK02119 hypothetical protein; Provisional
Probab=59.22 E-value=57 Score=26.87 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
.+.+.+|+..++=.++.+.....-+-.-.+|.+.|.++...|
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444433333333333333333333333333
No 317
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.03 E-value=29 Score=34.63 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy114 588 DRLLKEHEKVQ 598 (609)
Q Consensus 588 drl~~e~~~l~ 598 (609)
++|..|+..|.
T Consensus 187 ~~l~~ev~~L~ 197 (290)
T COG4026 187 KKLPGEVYDLK 197 (290)
T ss_pred HhchhHHHHHH
Confidence 33333333333
No 318
>PRK14158 heat shock protein GrpE; Provisional
Probab=59.01 E-value=23 Score=34.85 Aligned_cols=40 Identities=5% Similarity=0.112 Sum_probs=29.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
+++..+.+++++|++++++..+.+..+.+|++..||..+.
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777888888888888888888888888876554
No 319
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.90 E-value=37 Score=27.56 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy114 574 AALKNQADSVGKEYDRL 590 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl 590 (609)
++|....++|..|-..-
T Consensus 49 eaL~~eneqlk~e~~~W 65 (79)
T COG3074 49 EALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 320
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=58.87 E-value=30 Score=36.43 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=43.6
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAA--LKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~--lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.|.-.|+.|..+||+|.++++.++++.|+|+.. +-+..+-..-.||++.+=-++.|..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~ 91 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMREL 91 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 456778999999999999999999888888764 2233444567888888887777553
No 321
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.58 E-value=1.8e+02 Score=29.75 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhHH
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSVGK 517 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa~~ 517 (609)
+|..+-..++.+....+.++.+++.+-+
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666677777766665544
No 322
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.51 E-value=57 Score=36.58 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=34.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy114 504 NSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580 (609)
Q Consensus 504 ~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~ 580 (609)
..+.++++.+.+.++.+.|..+|... ..++...+.+++..+++++...+.++..+++.+..+++|.
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~~~-----------~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENGGI-----------LPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccc-----------CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555665444221 1112223455666666666666666666666666666553
No 323
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.50 E-value=11 Score=41.93 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
+.|++.++++.++.++++++.+.|+..|++|.+
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555666666666766653
No 324
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.45 E-value=24 Score=34.72 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=31.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
.+++.+..++++|++++++..+.+..+.+|.+.+||..+.
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888888876543
No 325
>KOG0288|consensus
Probab=58.38 E-value=1.1e+02 Score=33.58 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~ 530 (609)
-.-++.|+..+++..+|+++-.+-..-+-.++-+||..+.
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777666666666666666665553
No 326
>KOG0239|consensus
Probab=58.33 E-value=1.3e+02 Score=35.54 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~ 565 (609)
........+.++++.+...-+..+...+.+...-++..++...+...+.. .......++.+.+.-.-.++++.....+
T Consensus 172 ~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 249 (670)
T KOG0239|consen 172 LALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGN--YADLRRNIKPLEGLESTIKKKIQALQQE 249 (670)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hhhHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 34444555566666666666666655555555555655555555444320 0001111222222222223333333344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+.+++...++.+...+.+||.+.+.+...++.+++
T Consensus 250 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 250 LEELKAELKELNDQVSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555544443
No 327
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=58.25 E-value=85 Score=31.87 Aligned_cols=43 Identities=7% Similarity=0.190 Sum_probs=37.1
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
+++|-......+..|-.+|+.+.+..+.+-+|-..+..+.-.+
T Consensus 20 ~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~ef 62 (234)
T cd07664 20 SDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAF 62 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999877666654444
No 328
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=58.22 E-value=34 Score=37.88 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTE 563 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~ 563 (609)
+.+++++||+++++.+
T Consensus 71 l~~~~~~l~~~~~~~~ 86 (425)
T PRK05431 71 LIAEVKELKEEIKALE 86 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 329
>PRK14147 heat shock protein GrpE; Provisional
Probab=58.15 E-value=40 Score=32.59 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=31.5
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
+...+..++++|++++++.++.+..+.+|.+..||..+.
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888999999999988888888899988886554
No 330
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=57.99 E-value=1.6e+02 Score=29.62 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
.+++|++.++++...++.+++++......+.+.....|.+-+.
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~ 192 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWK 192 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777765443
No 331
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=57.90 E-value=2.1e+02 Score=28.72 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 559 LSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 559 l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
+++...++.+++.++...+.+-+..-.+|+
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~ 181 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALR 181 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333333333
No 332
>PHA01750 hypothetical protein
Probab=57.86 E-value=58 Score=26.15 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
|++.|++|.+.+.+.-|.|.+...++...
T Consensus 43 ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55566666666665556655555555543
No 333
>PRK14140 heat shock protein GrpE; Provisional
Probab=57.85 E-value=25 Score=34.54 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=31.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
+++..+..++++|++++++.++.+..+.+|.+.+||.++.
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999988888888888888888886554
No 334
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.80 E-value=41 Score=29.74 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl 590 (609)
++.+|..+.++++.=-|.|
T Consensus 80 ~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 80 ELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 335
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=57.77 E-value=42 Score=29.68 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+..|+..+-.+- +++.+||+|...+-.|--+|--|+.+|+..|..
T Consensus 10 v~~le~~l~~l~-------~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 10 VDNLEEQLGVLL-------AELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 445555555444 488999999999999999999999999988874
No 336
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=57.59 E-value=34 Score=34.75 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy114 11 VLYFEMAFMLLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVILSLFFLDAIREMRKYASPEV 78 (609)
Q Consensus 11 ~L~~E~~~~~lL~lP~p~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lf~Ds~~~~~k~~~~~~ 78 (609)
++..=+++.+++++|.--..-..++..+.+...+-...-.....++-+.++-++.-++|+.+|+..|+
T Consensus 48 ~~s~~~~i~lF~~lP~~l~~~~~~~~~~~~~~~l~eG~ir~~if~~Yi~~is~~~dI~Rvf~YHGAEH 115 (236)
T PF07136_consen 48 ILSLALAIGLFVVLPTFLAGLLKRFISSSFLFNLIEGLIRLAIFLGYIWLISRMKDIKRVFQYHGAEH 115 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcchhh
Confidence 44555677788888864211122333333332222221112222333455666678899999987664
No 337
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.37 E-value=1.4e+02 Score=32.62 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=42.6
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114 502 KTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569 (609)
Q Consensus 502 ~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~ 569 (609)
......+..|++.++.|-.+-..|-...+..++....+ -..++.....+++.|++.+.++..-++-|
T Consensus 232 ~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~-~~~ei~~~e~~i~~L~~ai~~k~~~lkva 298 (384)
T PF03148_consen 232 EQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKK-TLQEIAEMEKNIEDLEKAIRDKEGPLKVA 298 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34556678888888888888887777776666543322 23455556666666666666665554443
No 338
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=57.08 E-value=47 Score=27.00 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
..+++..++.++++.+++..+.|..-+++.++.+++.+.-+.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666666667777777777666666
No 339
>KOG3848|consensus
Probab=56.76 E-value=3.8 Score=44.06 Aligned_cols=30 Identities=30% Similarity=0.921 Sum_probs=26.6
Q ss_pred cccccCccccccccCCCC--CccCCCCCcccc
Q psy114 277 FDCNTYSSCTQCVSSDFP--CDWCVDGHRCTH 306 (609)
Q Consensus 277 ydCs~~~~C~sCvsS~~p--C~WC~~~~~CT~ 306 (609)
-.|-.+.+|.+|++|.-+ |-||.--++|+.
T Consensus 317 PTCLqfn~Cd~C~ns~ltFnClWC~vlqrCSs 348 (516)
T KOG3848|consen 317 PTCLQFNTCDTCTNSTLTFNCLWCHVLQRCSS 348 (516)
T ss_pred CceeccCCcChhhccCCCceeehHhhhhhhcc
Confidence 489999999999998855 999999999985
No 340
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=56.75 E-value=1.2e+02 Score=31.92 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC----CCcc---------hhhcccCHHHHHHHHHHHH
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG----DKKD---------DKYQKGDSDEIKRLKEKLS 560 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~----~~~~---------~~~~~~~~~e~~~lk~~l~ 560 (609)
|-.++|.++-..+.++.|.+- --++|+++++.+|...++-- ..++ ....+.|+.|...|..+|+
T Consensus 4 Lq~eia~LrlEidtik~q~qe---kE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQE---KEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 456677777777888866543 34588888887776433211 0010 0223445555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhh
Q psy114 561 KTEEELKKEKTNSAALKNQAD--------------SVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 561 ~~~~~l~~~~~~~~~lkkQ~~--------------~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+..-.+.|+|++..+.-.. .+...+-|--+|+..||..+.
T Consensus 81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn 136 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMN 136 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhc
Confidence 444434444555554433222 233344555566666665544
No 341
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=97 Score=28.11 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++.+...+..++.|..+.+.|.+-=.++-++.++||..+.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777889999999999999999999999988776
No 342
>PRK01156 chromosome segregation protein; Provisional
Probab=56.69 E-value=1.5e+02 Score=36.08 Aligned_cols=10 Identities=0% Similarity=-0.303 Sum_probs=6.1
Q ss_pred CceEEEecCC
Q psy114 211 GQLLCAFTIG 220 (609)
Q Consensus 211 ~~~~C~F~~~ 220 (609)
.++.+.+|..
T Consensus 23 ~gi~~I~G~N 32 (895)
T PRK01156 23 TGINIITGKN 32 (895)
T ss_pred CCeEEEECCC
Confidence 3567777753
No 343
>KOG4643|consensus
Probab=56.65 E-value=1.7e+02 Score=35.61 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..|.....+.++..++.....+-++++++.|..+--.|-+|+..|.++++
T Consensus 505 srl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 505 SRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333444445555556666666666666666666666666554
No 344
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.41 E-value=75 Score=36.34 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHhhhhHHHHHHHhhhhHHHHHHHHHHHHH----HHH---------HhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114 499 KKEKTNSAALKSQADSVGKEYDRLLKEHEK----VQK---------VVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565 (609)
Q Consensus 499 a~~~~~~ea~~kQa~sa~~~ak~~~~e~~~----l~~---------~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~ 565 (609)
..+....+...-|.+.+...-+.+|++-+- |.+ .+..+++. ....+.+..++++.||...
T Consensus 265 ~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~----~~~~l~~~~~~~~~el~~L--- 337 (557)
T COG0497 265 SELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGV----TIEDLLEYLDKIKEELAQL--- 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHh---
Confidence 333444444555666666666666654432 111 12222222 2334455566666666554
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...+.+.+.|+++.+.+..+|+...++.++.+.+.+
T Consensus 338 -~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 338 -DNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999999999888888776543
No 345
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.33 E-value=1e+02 Score=28.29 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++.+.++.+.+.++...+.++.++++..++
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666665544
No 346
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.95 E-value=61 Score=26.44 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy114 583 VGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 583 l~~eydrl~~e~~~l~~~ 600 (609)
.-.|-+.|.+|...|+++
T Consensus 45 a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 347
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=55.74 E-value=21 Score=33.78 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=29.6
Q ss_pred chhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 541 ~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
...++..+..++++|++++++..+++.++.++++.+++..+.-
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e 51 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKE 51 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788888777777777777777766655443
No 348
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.68 E-value=48 Score=34.94 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 508 LKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 508 ~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
+--.+|-|-+.|..|-..-+.++..+
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44556667777777777776666654
No 349
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=55.46 E-value=1.4e+02 Score=33.10 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=43.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
....-++.|.+-|+...+.|..+++|.++|.-|.+.+...|-+|-|+|..
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445677888888899999999999999999999999999999888865
No 350
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.31 E-value=2e+02 Score=33.10 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
....++++++|+. +...+.+++.|+++.+.+.++|..+..+..+.+.+.
T Consensus 328 ~~~~~~l~~eL~~----l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 328 LEYAEKIKEELDQ----LDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444432 344566788888888888888888888887776553
No 351
>PLN02678 seryl-tRNA synthetase
Probab=55.19 E-value=42 Score=37.47 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy114 551 EIKRLKEKL 559 (609)
Q Consensus 551 e~~~lk~~l 559 (609)
++++||+++
T Consensus 79 ~~~~Lk~ei 87 (448)
T PLN02678 79 ETKELKKEI 87 (448)
T ss_pred HHHHHHHHH
Confidence 333333333
No 352
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.00 E-value=71 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy114 579 QADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 579 Q~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+.++|..+-+.|.+|+..|+.++
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 353
>PRK14161 heat shock protein GrpE; Provisional
Probab=54.97 E-value=44 Score=32.46 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=29.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.+.+.+++++|++++++.++.+..+.+|++.+||.++.-
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888766543
No 354
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.90 E-value=54 Score=35.31 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..||+|+-++|.||.+....|.++++.+++
T Consensus 351 KaaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 351 KAALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666655554
No 355
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.89 E-value=1.6e+02 Score=33.77 Aligned_cols=119 Identities=10% Similarity=0.232 Sum_probs=66.4
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh----cCCCc-chhhcccCHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE----QGDKK-DDKYQKGDSDEIKRL 555 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~----~~~~~-~~~~~~~~~~e~~~l 555 (609)
...+..+..++..|-..+..+......+.+......+.-....+.|..+...+.. ..... +.+....+.++++.+
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l 356 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKEL 356 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 3457788888888888877777766666666555555555555555554432211 11222 223445555666666
Q ss_pred HHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 556 KEKLSKTEEELKKE-------KTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 556 k~~l~~~~~~l~~~-------~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+......+.+... ...++.+.++.+.+.++...+.+..+.|+.
T Consensus 357 ~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 357 EKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555544332 345555555666666666555555555554
No 356
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.82 E-value=50 Score=26.08 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+..|...-+.|..+++.|.++++.|..
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555543
No 357
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=54.34 E-value=48 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..++.+....|.+..+....-+.+-.+|..++|+|..|..||.+-.+.++..|.
T Consensus 19 ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 73 (157)
T PF04136_consen 19 LLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQ 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555555566665555556667788899999999999999888877776654
No 358
>PF13166 AAA_13: AAA domain
Probab=54.30 E-value=82 Score=37.02 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=5.6
Q ss_pred hhhhhhH----HHHH
Q psy114 98 RAQRNFY----ISGF 108 (609)
Q Consensus 98 ~aQRN~Y----isGf 108 (609)
+.+.|++ +-|+
T Consensus 70 fv~~nl~~~~~~~~i 84 (712)
T PF13166_consen 70 FVEDNLREENEIKGI 84 (712)
T ss_pred HHHHhcCCcCCcccc
Confidence 4445555 5555
No 359
>PRK10869 recombination and repair protein; Provisional
Probab=54.09 E-value=1.5e+02 Score=34.03 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+...+.+++.|++|.+.+.++|..+.++.++.+.+.
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888999999899988888888776553
No 360
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=53.90 E-value=1.8e+02 Score=29.05 Aligned_cols=43 Identities=7% Similarity=0.202 Sum_probs=36.4
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
+++|.......|..|-.+|+.+.+..+++-++-.....+.-.+
T Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f 52 (224)
T cd07623 10 TDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSF 52 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998877665554443
No 361
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=53.77 E-value=2.6e+02 Score=30.95 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
-+-..++|.+...+|.+....|.++++.-+.
T Consensus 244 gVRp~~~qLe~v~kdi~~a~keL~~m~~~i~ 274 (426)
T smart00806 244 GVRPSKKQLETVQKELETARKELKKMEEYID 274 (426)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677888888888888888887776554
No 362
>PHA03011 hypothetical protein; Provisional
Probab=53.62 E-value=23 Score=30.82 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
+-|..|++.|.+.|-..|+.|++|++.+.+.
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne 86 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENE 86 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888877654
No 363
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.60 E-value=41 Score=27.36 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDK 607 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~k 607 (609)
++..++.+++++++++.+.+.+.+.|+++.+.|...-|.+ ++...-+--+..+++.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i-e~~AR~~lgm~~~~E~ 73 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI-EKVAREKLGMVKPGEI 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHcCCcCCCCE
No 364
>smart00338 BRLZ basic region leucin zipper.
Probab=53.49 E-value=45 Score=26.44 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy114 573 SAALKNQADSVGKEYDRL 590 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl 590 (609)
.+.|+++.+.|..|++.|
T Consensus 42 n~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 42 NERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 365
>KOG0982|consensus
Probab=53.19 E-value=1.3e+02 Score=33.01 Aligned_cols=54 Identities=22% Similarity=0.062 Sum_probs=40.7
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
+++..++..+..||....+.+++.++....+++++-|..-.+++|-|..+....
T Consensus 311 eentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 311 EENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777787777777778888888888888888888888776655444
No 366
>PRK14156 heat shock protein GrpE; Provisional
Probab=52.51 E-value=41 Score=32.65 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=29.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
++-.+.+++++|++++++.++.+.++.+|++.+||..+.
T Consensus 28 ~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 28 EETPEKSELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888876544
No 367
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.41 E-value=92 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
.+|+.++.+.+-.+...+++.+.+++..|.+.+-..+|++=|.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333444444444444444444444443
No 368
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.38 E-value=1.7e+02 Score=25.86 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
..|+++++..+.++++.+...+.++++.+.+.+.+..+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556666666666666655554
No 369
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=52.35 E-value=1.7e+02 Score=29.51 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=29.3
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
+.+-+....++...|.+.+.+.|+|+..|+--|+|++.|
T Consensus 108 D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg 146 (232)
T cd07646 108 DSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQG 146 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445556667777788888888888888888888888765
No 370
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=52.33 E-value=2.5e+02 Score=28.58 Aligned_cols=7 Identities=0% Similarity=0.601 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy114 581 DSVGKEY 587 (609)
Q Consensus 581 ~~l~~ey 587 (609)
+....+|
T Consensus 174 ~~~~~~~ 180 (261)
T cd07648 174 NNIRADF 180 (261)
T ss_pred HHHHHHH
Confidence 3333333
No 371
>KOG2751|consensus
Probab=52.31 E-value=1.2e+02 Score=33.45 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=30.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+.+..|-++|-.+|++..++-..-..++..+...++.+..+-++..+|+..-+.++
T Consensus 186 ~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~ 241 (447)
T KOG2751|consen 186 KNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQL 241 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444443332222233444566667777888888888887766543
No 372
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.27 E-value=2.3e+02 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALK 577 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lk 577 (609)
.+++++|+.++.+.+.++..++.+.+.+.
T Consensus 144 ~~ki~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 144 PAKVEELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777776666666666443
No 373
>KOG3156|consensus
Probab=52.24 E-value=1.5e+02 Score=29.56 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVG 584 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~ 584 (609)
++|+..||+|.+...
T Consensus 180 d~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 180 DQEVTNLKTQIESVK 194 (220)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 374
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.17 E-value=2.9e+02 Score=28.55 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=22.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKE----KTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~----~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
...|..+++.|+.++.++.++|+-. +.|.-.---|..+|.+.-+.|.++++.
T Consensus 83 l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 83 LSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544332 111111111555555555555444443
No 375
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.94 E-value=48 Score=34.26 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEE 564 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~ 564 (609)
..||++||.+|....+
T Consensus 88 etEI~eLksQL~RMrE 103 (305)
T PF15290_consen 88 ETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666655443
No 376
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.89 E-value=98 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy114 577 KNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 577 kkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.++-..|..|.++|-++..+++
T Consensus 38 E~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 377
>smart00338 BRLZ basic region leucin zipper.
Probab=51.86 E-value=55 Score=25.89 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
+.++..|..+-+.|..+++.|..|+..|..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666666666666554
No 378
>PLN02320 seryl-tRNA synthetase
Probab=51.72 E-value=88 Score=35.42 Aligned_cols=17 Identities=47% Similarity=0.374 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~ 564 (609)
+.++.++||++++.+++
T Consensus 135 l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEE 151 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 379
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=51.70 E-value=2.1e+02 Score=29.16 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr 589 (609)
..+++|++..+++...++.+++.+.+..=+..+....+|.+
T Consensus 152 ~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~ 192 (242)
T cd07671 152 PKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWET 192 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666666666666555555666666654
No 380
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.37 E-value=88 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+=..|+.|.+++..|=+.|.+.++..+.+++
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777777777777776666554
No 381
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.20 E-value=2.4e+02 Score=29.33 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=61.8
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKS-------QADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIK 553 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~k-------Qa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~ 553 (609)
++-|.+|.-+|-.|+.+++.+...-..--. ...+..+.-...-+...++...+.+-+. .+....++.
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~------k~P~s~kl~ 168 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKY------KDPQSPKLV 168 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-TTTTTHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHh------cCCCChHHH
Confidence 567999999999999888877765444333 3333333322222222222222211100 011133577
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHH
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQA--DSVGKEYDRLLK 592 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~--~~l~~eydrl~~ 592 (609)
.|+.||...+.+...+|+++..+|.|. |++...+|-+.|
T Consensus 169 ~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E 209 (271)
T PF13805_consen 169 VLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIE 209 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 788888888877778888888888775 566667777644
No 382
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=51.18 E-value=83 Score=25.48 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
+.+.+|+.+++=.++.+.....-+....++.+.|.++...|.+....+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666655555433333333333444444444444443333333
No 383
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.14 E-value=32 Score=29.88 Aligned_cols=36 Identities=36% Similarity=0.439 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
...++++|++++++.++++.+.+.++.++++|.+-|
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355777777778777777777777888888876644
No 384
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=51.14 E-value=1.5e+02 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy114 580 ADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
=+++..|||.+..||..++..++
T Consensus 204 Ye~lg~~F~~ivreY~~l~~~ie 226 (238)
T PF14735_consen 204 YEGLGPEFEEIVREYTDLQQEIE 226 (238)
T ss_pred HhcccHhHHHHHHHHHHHHHHHH
Confidence 56888899999999999998876
No 385
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.10 E-value=52 Score=24.49 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.++|+..-+.|.+|=++|..|...|...++
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666666666666777777777777766554
No 386
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.90 E-value=2.5e+02 Score=29.62 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=15.4
Q ss_pred HHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 497 ELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 497 qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
..+.+..+.++.+++.+.+.+.-+.+-.+-+..+.
T Consensus 75 ~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 75 NIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544444444444333333333
No 387
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=50.69 E-value=48 Score=30.36 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.6
Q ss_pred cccCHHHHHHHHHHHHHHHH-----------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEE-----------ELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~-----------~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
.+++...++++.+++.+.-. ..+.++..+.+|+.+.++|..-|+||..|.
T Consensus 35 l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 35 LKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554443322 134557788899999999999999998764
No 388
>KOG3208|consensus
Probab=50.68 E-value=2.4e+02 Score=28.36 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcch------hhcccCHHHHHHHHHHHHHHHHHHHH--h-----hh
Q psy114 505 SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD------KYQKGDSDEIKRLKEKLSKTEEELKK--E-----KT 571 (609)
Q Consensus 505 ~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~------~~~~~~~~e~~~lk~~l~~~~~~l~~--~-----~~ 571 (609)
=|++.|||.+.+..-+..|-.-.++...-..++..+.. ...+++..|+|-|=++|.+..+.... + ..
T Consensus 7 we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s~a~~aa 86 (231)
T KOG3208|consen 7 WEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASSPANSAA 86 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcHH
Confidence 48999999999998887776666665551111111111 13566777777777777666665544 1 00
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q psy114 572 NSAALK---NQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 572 ~~~~lk---kQ~~~l~~eydrl~~e~~~l~~ 599 (609)
-..+|+ .=..+..+||.|........|+
T Consensus 87 ~~htL~RHrEILqdy~qef~rir~n~~a~~e 117 (231)
T KOG3208|consen 87 VMHTLQRHREILQDYTQEFRRIRSNIDAKRE 117 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 2233456677776665555554
No 389
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.44 E-value=1.4e+02 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.++..+.++.+.+.++.+.+..+..++|
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555556666666666666655555544
No 390
>PRK14141 heat shock protein GrpE; Provisional
Probab=50.38 E-value=44 Score=33.32 Aligned_cols=37 Identities=11% Similarity=0.277 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
..+..++++|++++++.++.+..+.+|++.+||..+.
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788999999999988888899999999887654
No 391
>KOG0163|consensus
Probab=50.37 E-value=86 Score=36.82 Aligned_cols=44 Identities=30% Similarity=0.283 Sum_probs=36.1
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
.+..+..+..+.+..+..+..+.+.+.++|.|+...-+.++...
T Consensus 841 K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~I 884 (1259)
T KOG0163|consen 841 KINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKI 884 (1259)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHh
Confidence 56677788888899999999999999999999888877776543
No 392
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.18 E-value=1.4e+02 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 555 LKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 555 lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
.|.|.++..+..++.|.|..++|...|+-++.-..+.+|...
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~ 283 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQK 283 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444445555555555444444444444333
No 393
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.17 E-value=2.1e+02 Score=29.23 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=23.2
Q ss_pred CChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 480 ~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
|...+....+....|+.+++.. +-...+.-|+.--++|..++..-
T Consensus 121 ~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 121 PSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRV 165 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666655554 23333444444445555555444
No 394
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.05 E-value=2.6e+02 Score=30.95 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy114 584 GKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 584 ~~eydrl~~e~~~l~~~~~ 602 (609)
.+.-+++.+|++++..+++
T Consensus 198 ~~kl~~~~~E~kk~~~~l~ 216 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLN 216 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555544
No 395
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=49.67 E-value=2.5e+02 Score=29.04 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALKSQADSVGKEYDRLL 523 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~ 523 (609)
...+.++...+......+..+.....+.-.+|.
T Consensus 69 ~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~ 101 (269)
T cd07673 69 WDVFKTSTEKLANCHLELVRKLQELIKEVQKYG 101 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433333333333333
No 396
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.66 E-value=47 Score=37.00 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..+++.-+.+.+++.+|.++..+|+.+++
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555554444
No 397
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.49 E-value=1.1e+02 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e 593 (609)
++---|+|=.+|.++|+.+..+
T Consensus 83 ~~r~yk~eYk~llk~y~~~~~~ 104 (126)
T PF09403_consen 83 KVRWYKDEYKELLKKYKDLLNK 104 (126)
T ss_dssp GGSTTHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555544333
No 398
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=49.49 E-value=2.2e+02 Score=29.57 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=33.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+..+.|++.++++|++++++++.....+.++|...-.|..|--||.+...-++.++
T Consensus 203 ~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 203 ELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666677766666666666666676666666555555555444444433
No 399
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=49.41 E-value=1.9e+02 Score=29.89 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy114 516 GKEYDRLLKEHEKVQKV 532 (609)
Q Consensus 516 ~~~ak~~~~e~~~l~~~ 532 (609)
...+++++...+.+..+
T Consensus 37 ~~~Vr~lLqqy~~~~~~ 53 (258)
T PF15397_consen 37 ALKVRKLLQQYDIYRTA 53 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666665444
No 400
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.40 E-value=1.3e+02 Score=33.47 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+.+++..++++++. +-+.+.++..|.-+++....=|+.++..++++..+.
T Consensus 353 ~L~~~~~~l~~~~~~----~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 353 ALEKELAQLKGRLSK----LPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHhh----chHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444433 334677888899999999999999999999988765
No 401
>KOG4052|consensus
Probab=49.39 E-value=19 Score=34.08 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy114 571 TNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.|+.+||+|.|+|..||..+.+|
T Consensus 145 vevt~lk~qce~lleeyed~i~e 167 (190)
T KOG4052|consen 145 VEVTALKQQCESLLEEYEDLIEE 167 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999887
No 402
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=49.38 E-value=2.1e+02 Score=26.20 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 564 EELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 564 ~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+...++.+++.||.+.+.-...++.- +||..|-..+.
T Consensus 88 ~~i~~~k~~ie~lk~~L~~ak~~r~~k-~eyd~La~~I~ 125 (139)
T PF05615_consen 88 QEIEQAKKEIEELKEELEEAKRVRQNK-EEYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 334444555666666666665555444 56666655444
No 403
>KOG0612|consensus
Probab=49.32 E-value=86 Score=38.76 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=11.9
Q ss_pred cccCCCccccCCceEEE
Q psy114 185 FSAQNGISDLKPRTLDL 201 (609)
Q Consensus 185 ~~~P~n~s~~~~~~v~l 201 (609)
++.|+||=....+-+.|
T Consensus 200 DiKPDNvLld~~GHikL 216 (1317)
T KOG0612|consen 200 DIKPDNVLLDKSGHIKL 216 (1317)
T ss_pred cCCcceeEecccCcEee
Confidence 67899987776655553
No 404
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.88 E-value=46 Score=26.61 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=29.7
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHH------Hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELK------KEKTN-SAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~------~~~~~-~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
.|.+.|..+++++++++....+.|. +|=.+ ++.=+.+.+.+..++.+|.+....|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666666665542 33223 3355566666666666665544433
No 405
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=48.87 E-value=1e+02 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=19.2
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 502 KTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532 (609)
Q Consensus 502 ~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~ 532 (609)
.+-..|+-|-.+..++..+.+.++-+.+.+.
T Consensus 24 LAGLGA~ak~~~EG~k~F~~LVk~Ge~~e~~ 54 (132)
T PF05597_consen 24 LAGLGAYAKAQEEGSKVFEALVKEGEKLEKK 54 (132)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566665666666777777666665443
No 406
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=48.83 E-value=63 Score=34.46 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHHHhh
Q psy114 488 KEKLSKTEEELKKEK 502 (609)
Q Consensus 488 ~~~l~~li~qla~~~ 502 (609)
..++.+|.++.+.+.
T Consensus 32 ~~~~~~lske~a~l~ 46 (363)
T COG0216 32 PDEYRKLSKEYAELE 46 (363)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 407
>PRK14157 heat shock protein GrpE; Provisional
Probab=48.68 E-value=45 Score=33.69 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.+..++++|++|+++.++++..+.+|.+..||.++.-
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE 117 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKE 117 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999876543
No 408
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=48.67 E-value=14 Score=33.42 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=21.2
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
.+-..|..|+.++..+......++.|.+.++..-..+-+..+.++..+
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 344555666666666666666777666666665555544555555443
No 409
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.67 E-value=55 Score=37.88 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
-..|+++|+++|.+....+.+.+.+++.++.+...+..|..+...+.++++.++
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555555565555555555555555555555555443
No 410
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.63 E-value=1.2e+02 Score=25.51 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+++|-...+....|.|.|..|++-||.
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555554
No 411
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.61 E-value=26 Score=34.22 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=34.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 95 KLFRAQRNFYISGFSLFLWLVIRQIIQLIA----QQANLLAQNEASMNQARQAAVAAQALL 151 (609)
Q Consensus 95 ~~f~aQRN~YisGf~LfL~lvi~r~~~li~----~~~~l~~~~~a~~kqa~~a~~~a~~~~ 151 (609)
+--|.|| ||+|+..|++--|++||- +...+++.+.+-.....-|-.+|++-|
T Consensus 7 r~~r~qR-----G~~LivvL~~LvvltLl~l~~~r~~llqeRiSaN~~D~~lAfqaAEaaL 62 (196)
T COG4726 7 RGSRRQR-----GFALIVVLMVLVVLTLLGLAAARSVLLQERISANERDRSLAFQAAEAAL 62 (196)
T ss_pred CCccccC-----ceEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4457788 999999888888877763 445556666555555555555555555
No 412
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=48.54 E-value=44 Score=32.87 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
.+++++|++++++..+.+.++.+|++.+|+.++
T Consensus 42 ~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~ 74 (193)
T COG0576 42 QQEIAELEAQLEELKDKYLRAQAEFENLRKRTE 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999888888888888888888654
No 413
>smart00340 HALZ homeobox associated leucin zipper.
Probab=48.52 E-value=39 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
|.|-+-||+=.|.|..|-.||..|.++|+..
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999853
No 414
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=48.48 E-value=57 Score=32.37 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=32.2
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
.+++.|+..|.+++.++++..++++.++...+..-.+-...++|.+.|+.
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777777666666444444455566666644
No 415
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.23 E-value=70 Score=29.24 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
+++.|+++.+.||+.-+.++.. =..-.+.|.+-++.-.+=|++|.+-.++
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~ 79 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEE 79 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444433 1222333333333333334444433333
No 416
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=48.12 E-value=2.1e+02 Score=28.98 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+..-.++++++-+..+...+++.+.+....+|.+...+.|.....|+.+++.++
T Consensus 92 ~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~ 146 (239)
T cd07658 92 PLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQV 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566667777777777788888888888888888887654
No 417
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=47.93 E-value=1.5e+02 Score=24.21 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=36.3
Q ss_pred EEecccCCCccccCCceEEEeecCCCCCCCceEEEe-cCCCccccccceecCCceeecCCCC
Q psy114 182 ARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAF-TIGETTVTTEAIKQTNGVKCATPPT 242 (609)
Q Consensus 182 ~~~~~~P~n~s~~~~~~v~l~v~~lP~L~~~~~C~F-~~~~~~~~~~a~~~~~~v~C~sP~~ 242 (609)
.|.++.|..-+....+.|+|.=.++-.-. .+.|.| |+..- ......++.+.|.+|+.
T Consensus 2 ~I~~i~P~~g~~~GGt~itI~G~~f~~~~-~~~v~~~g~~~c---~~~~~~~~~i~C~~p~~ 59 (89)
T cd00102 2 VITSISPSSGPVSGGTEVTITGSNFGSGS-NLRVTFGGGVPC---SVLSVSSTAIVCTTPPY 59 (89)
T ss_pred EEeEEECCcCCCCCCeEEEEEEECCCCCC-cEEEEEeCCCeE---EEEEecCCEEEEECCCC
Confidence 46788888777766667777766664321 589999 65320 11122456799998864
No 418
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.77 E-value=1.3e+02 Score=26.79 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
++.++++.+.+.++.+.+.++.++++..
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 419
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=47.76 E-value=2.6e+02 Score=27.20 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=46.3
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHH---HHHHHHHHHHHHHHHhhhcC---CCcchhhcccCHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGK---EYDRLLKEHEKVQKVVTEQG---DKKDDKYQKGDSDEIKRLKE 557 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~---~ak~~~~e~~~l~~~~~~~~---~~~~~~~~~~~~~e~~~lk~ 557 (609)
|..+..--.+|...|+......+.+..||+.++. +-++|.++-..++....... ...+..++..|..|..+|+.
T Consensus 5 i~~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~ 84 (181)
T PF05769_consen 5 IEQILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQ 84 (181)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 3344444445555666666666666666666554 34577777666655433211 11123445667777777777
Q ss_pred HHHHHHHHH
Q psy114 558 KLSKTEEEL 566 (609)
Q Consensus 558 ~l~~~~~~l 566 (609)
-|++-..++
T Consensus 85 ~leEhq~al 93 (181)
T PF05769_consen 85 SLEEHQSAL 93 (181)
T ss_pred HHHHHHHHH
Confidence 776665544
No 420
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=47.75 E-value=1e+02 Score=27.11 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 562 ~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++.|+..++.+-.+...-+.|.-.=++|......||..++
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555556666666777777777777776
No 421
>KOG0963|consensus
Probab=47.65 E-value=1.7e+02 Score=33.64 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
...|+.++-.+.....-.++|=.+....-+++-+.+..+
T Consensus 123 ~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~ 161 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLL 161 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHH
Confidence 445566666666666666666666666665555554444
No 422
>PRK15396 murein lipoprotein; Provisional
Probab=47.57 E-value=49 Score=27.70 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=17.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey 587 (609)
.++|..+++.|+.+.... ..|+.+++..++.-..|=
T Consensus 27 vd~LssqV~~L~~kvdql-------~~dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQL-------SNDVNAMRSDVQAAKDDA 62 (78)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334444555555544444 445555555555543333
No 423
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.55 E-value=45 Score=32.11 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
+++.|+++|.++++..++ .......||..+..|..|-|+..+++
T Consensus 124 eL~~eI~~L~~~i~~le~----~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEE----IQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666655443 44455567777777777777765554
No 424
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=47.44 E-value=1.2e+02 Score=34.20 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy114 554 RLKEKLSKTEEELKKE 569 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~ 569 (609)
+.++|.+++.++.+++
T Consensus 278 ~~kkE~EKaq~E~~k~ 293 (489)
T PF05262_consen 278 EEKKEAEKAQEEAKKK 293 (489)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444443344443
No 425
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.36 E-value=46 Score=36.80 Aligned_cols=17 Identities=47% Similarity=0.507 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~ 564 (609)
+.++++.|+.+++..+.
T Consensus 73 l~~e~~~l~~~l~~~e~ 89 (429)
T COG0172 73 LIAEVKELKEKLKELEA 89 (429)
T ss_pred HHHHHHHHHHHHHhccH
Confidence 44444444444444443
No 426
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.25 E-value=3.1e+02 Score=27.66 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=74.8
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHH-------Hhhhc-CCC-c--chhhcccCHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQK-------VVTEQ-GDK-K--DDKYQKGDSDE 551 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~-------~~~~~-~~~-~--~~~~~~~~~~e 551 (609)
.+..+.-+|...-.+|............+..+.+....+.-........ .+... +.+ . .......+..|
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae 158 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE 158 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence 4556666666666666666666666665555554443333222222211 11111 011 1 12334556777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..-|+.++...+.++..+..-.+-.+.|-+-+.++|+++-.+.+.||+.+.
T Consensus 159 ~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 159 LAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888777777777788889999999999999888888887765
No 427
>PLN02678 seryl-tRNA synthetase
Probab=47.13 E-value=45 Score=37.22 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 575 ALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 575 ~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.||+|.+.+..+++.+.++..++-
T Consensus 82 ~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 82 ELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 428
>PRK04406 hypothetical protein; Provisional
Probab=47.08 E-value=1.2e+02 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEE 564 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~ 564 (609)
...+..|+..++=.++
T Consensus 10 e~Ri~~LE~~lAfQE~ 25 (75)
T PRK04406 10 EERINDLECQLAFQEQ 25 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544444
No 429
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=47.01 E-value=3.8e+02 Score=29.42 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=11.3
Q ss_pred hhhcccCHHHHHHHHHHHHH
Q psy114 542 DKYQKGDSDEIKRLKEKLSK 561 (609)
Q Consensus 542 ~~~~~~~~~e~~~lk~~l~~ 561 (609)
+-....++.+++.|++++++
T Consensus 281 hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 281 HPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665544
No 430
>KOG3848|consensus
Probab=46.81 E-value=7 Score=42.12 Aligned_cols=30 Identities=30% Similarity=0.875 Sum_probs=24.7
Q ss_pred eccccCcccCccccCCCCcccccCCCCCccc
Q psy114 438 KCRDLANNCGLCLALPEKYGCGWCESSKRCE 468 (609)
Q Consensus 438 nCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~ 468 (609)
.|- +..+|..|.+.+-.|+|.||..-+.|.
T Consensus 318 TCL-qfn~Cd~C~ns~ltFnClWC~vlqrCS 347 (516)
T KOG3848|consen 318 TCL-QFNTCDTCTNSTLTFNCLWCHVLQRCS 347 (516)
T ss_pred cee-ccCCcChhhccCCCceeehHhhhhhhc
Confidence 453 567999999999889999997776776
No 431
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.77 E-value=74 Score=35.18 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSK 561 (609)
Q Consensus 549 ~~e~~~lk~~l~~ 561 (609)
.+++++||+++++
T Consensus 75 ~~~~~~l~~~~~~ 87 (418)
T TIGR00414 75 KKELKELKEELTE 87 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 432
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.53 E-value=1.6e+02 Score=30.53 Aligned_cols=24 Identities=13% Similarity=0.444 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 578 NQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 578 kQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
..-|+|...|++-.+|...|...+
T Consensus 162 sk~e~L~ekynkeveerkrle~e~ 185 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEV 185 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHH
Confidence 345677777777777776666543
No 433
>KOG0249|consensus
Probab=46.47 E-value=89 Score=36.46 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=26.2
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~ 584 (609)
++.+.|.+|++.+|+.+++..++-++-..|.+.|+.+.++|-
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334555666666666666666655666666666666666664
No 434
>KOG0981|consensus
Probab=46.46 E-value=29 Score=39.21 Aligned_cols=62 Identities=27% Similarity=0.392 Sum_probs=41.6
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNS-----AALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 542 ~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~-----~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+..++.|...|+.++.+|++..-+|..+.++- ..=+|-.|.+.+-++||.+..++|.-|+.+
T Consensus 635 ~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~d 701 (759)
T KOG0981|consen 635 EKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTD 701 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccc
Confidence 35566677777777777777776666654431 122334577777788888888888887763
No 435
>KOG3156|consensus
Probab=46.27 E-value=61 Score=32.22 Aligned_cols=35 Identities=14% Similarity=0.434 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
...++++++...+ +.|..+|+++.|.|..|.||+.
T Consensus 102 ~f~kiRsel~S~e------~sEF~~lr~e~EklkndlEk~k 136 (220)
T KOG3156|consen 102 DFAKIRSELVSIE------RSEFANLRAENEKLKNDLEKLK 136 (220)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554443 3677777777777777777663
No 436
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=46.23 E-value=1.9e+02 Score=24.70 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+-|.++-.....||.++.+++.+.+
T Consensus 74 ~KL~~df~~~l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 74 EKLSRDFKEALQEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555544444443
No 437
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.22 E-value=3.3e+02 Score=27.80 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
.++..+-.++..+....+.+++|+..+.+-+.++
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l 78 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSRKAQQL 78 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555444444443
No 438
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=46.00 E-value=1.1e+02 Score=28.95 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhccC
Q psy114 585 KEYDRLLKEHEKVQKVVTEQG 605 (609)
Q Consensus 585 ~eydrl~~e~~~l~~~~~~~~ 605 (609)
.-||-..+-.++++++|.++.
T Consensus 132 ~~~D~~~k~~~~~~~~l~~a~ 152 (155)
T PF07464_consen 132 QAYDDAVKAAQKVQKQLHEAA 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 347777777777777776543
No 439
>KOG0240|consensus
Probab=45.87 E-value=2e+02 Score=32.80 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114 515 VGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 515 a~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
+.+.-+++-++.+.|.+.+.+ .+.++++.....++||.++.+.+
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~-----kd~~~n~~sqL~~~lk~q~~~qe 455 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQ-----KDDQINKQSQLMEKLKEQLLDQE 455 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666555422 22333444444445544444433
No 440
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=45.76 E-value=24 Score=32.30 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYD 588 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eyd 588 (609)
+++.+++|.+.+.++++
T Consensus 24 ~l~~~~~~~~~~~~~l~ 40 (144)
T PF04350_consen 24 NLEELKKQLEQLEQQLE 40 (144)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444454444444443
No 441
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.67 E-value=2.1e+02 Score=29.19 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSA 574 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~ 574 (609)
+..+++|.+....+...+..++.+|..
T Consensus 181 ~~~~~eK~k~k~~~~~~k~~~akNeYl 207 (241)
T cd07656 181 IEKEVEKRQAKYSEAKLKCTKARNEYL 207 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665555555655554
No 442
>PRK14146 heat shock protein GrpE; Provisional
Probab=45.64 E-value=49 Score=33.17 Aligned_cols=38 Identities=11% Similarity=0.269 Sum_probs=30.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
...+..++++|++++++..+.+..+.+|++.+||.++.
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888888888888888888888886543
No 443
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.60 E-value=1e+02 Score=34.08 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.++++.++..+.++-..|.++..+++.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444443
No 444
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=45.57 E-value=42 Score=27.89 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHH
Q psy114 571 TNSAALKNQADSVG 584 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~ 584 (609)
.+-+.|+.+.+.|+
T Consensus 45 ~en~~L~~ei~~l~ 58 (85)
T TIGR02209 45 KEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444443
No 445
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.32 E-value=43 Score=35.95 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy114 580 ADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~~~ 600 (609)
..+|..|..|=.+....+..+
T Consensus 286 i~~L~~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 286 ISGLSGEKERWSEQIEELEEQ 306 (344)
T ss_dssp HHCCHHHHHCCHCHHHHHHHH
T ss_pred HhhhcchhhhHHHHHHHHHHH
Confidence 345555555554444444433
No 446
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=45.08 E-value=3e+02 Score=27.08 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=13.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
|.+.+.++...+++.+....+|+.+..+
T Consensus 108 l~~~~~~l~~~~~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 108 LEKKEEELEQRKEELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444466666666665444
No 447
>PRK14153 heat shock protein GrpE; Provisional
Probab=45.07 E-value=35 Score=33.64 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=24.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+++++.+++|.+.+...|-|+..|.++.+.+.+
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777776554
No 448
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=45.06 E-value=14 Score=41.34 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELK 567 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~ 567 (609)
++|+||+||+++++++.
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 56666666655544333
No 449
>KOG1103|consensus
Probab=45.04 E-value=2.4e+02 Score=30.09 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
.+|-+.|..+++=..++.+|+|.+.+-|..|.+
T Consensus 145 EKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 145 EKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 450
>PRK11519 tyrosine kinase; Provisional
Probab=44.96 E-value=1.1e+02 Score=36.19 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=24.8
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEK 528 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~ 528 (609)
.-+.++=+....+.++++.+.+.++-+.|..+|..
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33445556667777888888888888888877754
No 451
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.88 E-value=71 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=13.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
+.++.+.+..+.++|+|-+.+.++-+++
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555544444444444
No 452
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.72 E-value=3.4e+02 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=10.7
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALK 509 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~ 509 (609)
.+.+-...++.+...+......+-
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la 80 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLA 80 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 453
>PF13166 AAA_13: AAA domain
Probab=44.63 E-value=1.6e+02 Score=34.56 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQ 579 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ 579 (609)
+.++.+++..++++.+.++++..+++|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 427 NSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444443
No 454
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.56 E-value=3.5e+02 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy114 581 DSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 581 ~~l~~eydrl~~e~~~l~ 598 (609)
+++.++.++|.+|.+.|+
T Consensus 280 e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 280 EGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp CT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 556667777777766664
No 455
>KOG2685|consensus
Probab=44.55 E-value=75 Score=34.70 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=42.9
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114 502 KTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569 (609)
Q Consensus 502 ~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~ 569 (609)
+....-+.+|++-++-+.++-+.+-++.+..+...- .+..+|+......|+.||.-|..++.-|+-|
T Consensus 259 ~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql-~k~leEi~~~e~~I~~le~airdK~~pLKVA 325 (421)
T KOG2685|consen 259 RETANDLRTQADAVELAFKKRIRETQDARNKLEWQL-AKTLEEIADAENNIEALERAIRDKEGPLKVA 325 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHhcccccHHHH
Confidence 445566788888888888888777766555443211 1123556666677777777777666655555
No 456
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=44.49 E-value=3.2e+02 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=13.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
|.+.+.+++...++.+...++.+...++...+
T Consensus 101 L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~ 132 (201)
T PF12072_consen 101 LEKREEELEKKEEELEQRKEELEEREEELEEL 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 457
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.45 E-value=1.9e+02 Score=29.55 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~ 573 (609)
|-..|..+...+...+....-..+.|..+-++........ .........+..+.++|+.+-....++-...+.++
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea-----~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEA-----EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL 84 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
......+..|..+.++-.+|...|+..+.
T Consensus 85 ~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 85 REAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.25 E-value=76 Score=25.72 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 555 LKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 555 lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++..+.+++.++.-.+.-++.|-+..-..+++-|+|..+...|..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666665554
No 459
>KOG3647|consensus
Probab=44.20 E-value=1.4e+02 Score=30.81 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=11.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~ 568 (609)
..|.+++++-|.||+...+.|++
T Consensus 136 a~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544433
No 460
>KOG2391|consensus
Probab=44.12 E-value=72 Score=33.95 Aligned_cols=10 Identities=0% Similarity=0.162 Sum_probs=4.8
Q ss_pred HhhhhhHHHH
Q psy114 487 LKEKLSKTEE 496 (609)
Q Consensus 487 i~~~l~~li~ 496 (609)
|++.+++.++
T Consensus 207 irasvisa~~ 216 (365)
T KOG2391|consen 207 IRASVISAVR 216 (365)
T ss_pred hhHHHHHHHH
Confidence 5555554333
No 461
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.11 E-value=1.5e+02 Score=31.40 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=40.0
Q ss_pred cCcccCccccC---CCCcccccCCCCCccccccCCCCCCCCCChh---hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhh
Q psy114 442 LANNCGLCLAL---PEKYGCGWCESSKRCEIFEQCDKGLEGDSDE---IKRLKEKLSKTEEELKKEKTNSAALKSQADSV 515 (609)
Q Consensus 442 ~~~dCs~Cl~a---~~~y~C~WC~~~~~C~~~~~C~~~~~~~~~~---I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa 515 (609)
||.-|..|+.. .+...|.=|... ...+.-... .=+++. =..|++|+. +...+..+.|. .
T Consensus 27 GH~~C~sCv~~l~~~~~~~CP~C~~~--lrk~~fr~q--~F~D~~vekEV~iRkrv~------~i~Nk~e~dF~-----~ 91 (309)
T TIGR00570 27 GHTLCESCVDLLFVRGSGSCPECDTP--LRKNNFRVQ--LFEDPTVEKEVDIRKRVL------KIYNKREEDFP-----S 91 (309)
T ss_pred CCcccHHHHHHHhcCCCCCCCCCCCc--cchhhcccc--ccccHHHHHHHHHHHHHH------HHHccchhccC-----C
Confidence 89999999742 344567666421 112111110 001221 224445544 34444445554 5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy114 516 GKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 516 ~~~ak~~~~e~~~l~~~~ 533 (609)
.+++..|||+-|.+--.+
T Consensus 92 l~~yNdYLE~vEdii~nL 109 (309)
T TIGR00570 92 LREYNDYLEEVEDIVYNL 109 (309)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678899999888764433
No 462
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.01 E-value=2.6e+02 Score=33.05 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH---HHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT---EEE 565 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~---~~~ 565 (609)
.++.||-.+..-+.+.+.+.+.-.---+.++.|+.++-+.+.+..+-.. ...+...+...+++|+++++.+ .+.
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~f---a~ID~~Sa~rqIael~~~lE~L~~t~~~ 692 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNF---ASIDLPSAQRQIAELQARLERLTHTQSD 692 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcch---hhcchhhHHHHHHHHHHHHHHhcCChhH
Confidence 3455565555555555555554333444556666555555544432111 1223334455566666655443 233
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
+.-+.+...|-+.|..-|.+-|..-.+|-
T Consensus 693 ~~~~~~~l~aaQT~~~vler~~~~~~~e~ 721 (1104)
T COG4913 693 IAIAKAALDAAQTRQKVLERQYQQEVTEC 721 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334443344333433333333333
No 463
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=43.82 E-value=1.4e+02 Score=32.64 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhh
Q psy114 587 YDRLLKEHEKVQKVVT 602 (609)
Q Consensus 587 ydrl~~e~~~l~~~~~ 602 (609)
.+++.+...++.-|++
T Consensus 345 ~~~~~~~i~k~~~q~~ 360 (391)
T smart00435 345 IERLEERIEKLEVQAT 360 (391)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 464
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=43.81 E-value=1.7e+02 Score=25.05 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
++.+++...+.|.++-|.-.+|.++
T Consensus 57 e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 57 ENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 465
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=43.61 E-value=1.4e+02 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=25.2
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE 535 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~ 535 (609)
-+.++.+|+..+..+.....+ ++++.|-++-.+|++.+..
T Consensus 26 eKK~Insl~~~v~~l~nk~d~---------~~yknyk~ki~eLke~lK~ 65 (160)
T PF03978_consen 26 EKKEINSLIEDVSKLNNKSDA---------EAYKNYKKKINELKEDLKD 65 (160)
T ss_pred HHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHHHH
Confidence 345556666666555443333 5778888888888887754
No 466
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.61 E-value=2e+02 Score=30.45 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+|+-||.+|++.++.+....+++.--.+..|.+...+|.|-.|...|+
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333333333333333333333
No 467
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.58 E-value=62 Score=36.03 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=3.0
Q ss_pred cCccce
Q psy114 159 FGSHVW 164 (609)
Q Consensus 159 ~~~~~~ 164 (609)
.|.++|
T Consensus 71 ~g~d~~ 76 (451)
T PF03961_consen 71 PGKDGR 76 (451)
T ss_pred CCCCcE
Confidence 445554
No 468
>KOG1292|consensus
Probab=43.43 E-value=15 Score=40.83 Aligned_cols=25 Identities=44% Similarity=0.766 Sum_probs=21.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH
Q psy114 97 FRAQRNFYISGFSLFLWLVIRQIIQ 121 (609)
Q Consensus 97 f~aQRN~YisGf~LfL~lvi~r~~~ 121 (609)
.++=||+||.||++||.+.|..-+.
T Consensus 403 lns~RNl~IlG~Sif~gLsip~yF~ 427 (510)
T KOG1292|consen 403 LNSSRNLFILGFSIFLGLSIPQYFE 427 (510)
T ss_pred cccccchhhhhHHHHHhccHHHHHH
Confidence 3567999999999999999988554
No 469
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=43.42 E-value=66 Score=28.90 Aligned_cols=31 Identities=6% Similarity=0.188 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++.+.++.+.+.+++..+.++...++..++
T Consensus 94 ~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 94 RIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666665544
No 470
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=43.41 E-value=2.1e+02 Score=26.51 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=7.8
Q ss_pred HHHHHHhhhhHHHHHHHH
Q psy114 506 AALKSQADSVGKEYDRLL 523 (609)
Q Consensus 506 ea~~kQa~sa~~~ak~~~ 523 (609)
+..+.+|+.+.+.++.-+
T Consensus 51 ~~~~~ea~~~~~e~e~~l 68 (141)
T PRK08476 51 KTNSSDVSEIEHEIETIL 68 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 471
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=43.34 E-value=2.5e+02 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 100 QRNFYISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMN 138 (609)
Q Consensus 100 QRN~YisGf~LfL~lvi~r~~~li~~~~~l~~~~~a~~k 138 (609)
|.-.++.|+.+|+.++ |+.++++-...+.-=...+++
T Consensus 294 ~~~~~l~a~~vfl~~l--rll~~l~f~~~~~~~~~tl~~ 330 (425)
T PF08016_consen 294 QLYRYLLAFLVFLLWL--RLLKLLRFNRRLSLLSRTLRR 330 (425)
T ss_pred HHHHHHHHHHHHHHHH--HHhhheeecchHHHHHHHHHH
Confidence 3334899999888754 666666555444443444433
No 472
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.33 E-value=3.3e+02 Score=26.64 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=16.5
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhh
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSV 515 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa 515 (609)
.......++..|-.+++.+.+..+.++...+.+
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444333
No 473
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.26 E-value=1.6e+02 Score=28.50 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=6.3
Q ss_pred HhhhhHHHHHHHH
Q psy114 568 KEKTNSAALKNQA 580 (609)
Q Consensus 568 ~~~~~~~~lkkQ~ 580 (609)
+++.+++..|.++
T Consensus 131 ea~~~I~~~k~~a 143 (181)
T PRK13454 131 ESEKRIAEIRAGA 143 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 474
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.20 E-value=3e+02 Score=26.17 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl 590 (609)
+.++..|.+=++++..+|..-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~ 129 (155)
T PRK06569 109 NQNIEDINLAAKQFRTNKSEA 129 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 456777777788888888543
No 475
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=43.13 E-value=2.7e+02 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=9.1
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q psy114 565 ELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l 583 (609)
++...+.|+..||++.+.+
T Consensus 102 e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 102 ELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344555555554444
No 476
>KOG0288|consensus
Probab=43.12 E-value=1.9e+02 Score=31.69 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHH
Q psy114 488 KEKLSKTEEELKKEKTNSAALKSQ 511 (609)
Q Consensus 488 ~~~l~~li~qla~~~~~~ea~~kQ 511 (609)
..++..|-+.+|--.+..+++..|
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq 35 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQ 35 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444444433
No 477
>KOG4460|consensus
Probab=42.92 E-value=1.6e+02 Score=33.36 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.|+.+.++.-.++..++.+.+.+.+-++.|.+.||...+.+..|-+.++
T Consensus 592 ~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~ 640 (741)
T KOG4460|consen 592 LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMK 640 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333455556667778888888888888888777766655443
No 478
>KOG0979|consensus
Probab=42.78 E-value=2.2e+02 Score=34.78 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=27.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
+..++..+.+|++++++.++.+.-+.-.+.|+++-+.+..+|+....+
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence 344555666777777766666555555555555555555555444433
No 479
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=42.73 E-value=2.7e+02 Score=33.38 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=25.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...+++|+.+|+...+...||.--|.=|..-++..|+
T Consensus 129 ~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 129 KSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777666666666554
No 480
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=42.72 E-value=2.3e+02 Score=29.60 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q psy114 587 YDRLLKEHEKVQK 599 (609)
Q Consensus 587 ydrl~~e~~~l~~ 599 (609)
.|.+++++..|..
T Consensus 241 ~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 241 NDGFLARLEALWE 253 (301)
T ss_pred CCCHHHHHHHHHH
Confidence 3444444444443
No 481
>smart00150 SPEC Spectrin repeats.
Probab=42.70 E-value=1.9e+02 Score=23.67 Aligned_cols=29 Identities=7% Similarity=0.321 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+...++...+.|...|++|.+....-+.
T Consensus 70 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 98 (101)
T smart00150 70 PDAEEIEERLEELNERWEELKELAEERRQ 98 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777777777665554443
No 482
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=42.66 E-value=2.7e+02 Score=25.52 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=4.7
Q ss_pred hhHHHHHHHhhh
Q psy114 503 TNSAALKSQADS 514 (609)
Q Consensus 503 ~~~ea~~kQa~s 514 (609)
...+.+-||.+.
T Consensus 43 ~A~~~v~kql~~ 54 (126)
T PF07889_consen 43 DAVASVSKQLEQ 54 (126)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 483
>PRK02119 hypothetical protein; Provisional
Probab=42.54 E-value=1.2e+02 Score=24.88 Aligned_cols=46 Identities=9% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.++..+.+++..+.-.+.-++.|-+..-...++-|+|..+...|..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 484
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=42.49 E-value=2.6e+02 Score=26.39 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=53.3
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 502 KTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 502 ~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
+.-.+..++|---+.++.|++.+-.+.|..- .|---.+...++..|+....+|+-+.+--.+++.|...--++-.
T Consensus 48 meVrekVq~~LgrveEetkrLa~ireeLE~l-----~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 48 MEVREKVQAQLGRVEEETKRLAEIREELEVL-----ADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666544444321 12223555566666666666666666666666777665555666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy114 582 SVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 582 ~l~~eydrl~~e~~~l~~ 599 (609)
..++|=+.|..+...|-.
T Consensus 123 EknkeK~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMELVS 140 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555543
No 485
>PF15294 Leu_zip: Leucine zipper
Probab=42.37 E-value=4.2e+02 Score=27.66 Aligned_cols=126 Identities=21% Similarity=0.151 Sum_probs=0.0
Q ss_pred hHHHhhhhhH-----HHHHHHHhhhhHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHhhhcCCCc-chhhcccC
Q psy114 484 IKRLKEKLSK-----TEEELKKEKTNSAALKSQADSV---------GKEYDRLLKEHEKVQKVVTEQGDKK-DDKYQKGD 548 (609)
Q Consensus 484 I~~i~~~l~~-----li~qla~~~~~~ea~~kQa~sa---------~~~ak~~~~e~~~l~~~~~~~~~~~-~~~~~~~~ 548 (609)
+..+...+.+ ||+--++-.--.--+..||+-- .-+=+.++++.+...+.......+. -.....+|
T Consensus 39 ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL 118 (278)
T PF15294_consen 39 LDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKL 118 (278)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccc
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy114 549 SDEIKR-----LKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609 (609)
Q Consensus 549 ~~e~~~-----lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~kk~ 609 (609)
....+. |.+|+..+.++..+...-+..+.+|+-...+|=..|-.+.+.||.......+|++
T Consensus 119 ~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~ 184 (278)
T PF15294_consen 119 EPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKD 184 (278)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
No 486
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=42.28 E-value=1.9e+02 Score=26.90 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 504 NSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 504 ~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
..+.+..+.+.....--.-..+.+.|=..+-.-+..+++. .+.+++|.+|+++..+++..+-++.+.+-++.+++
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q-----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQ-----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy114 584 GKEYDR 589 (609)
Q Consensus 584 ~~eydr 589 (609)
-++.-|
T Consensus 138 i~~ia~ 143 (144)
T PF11221_consen 138 IREIAR 143 (144)
T ss_dssp HHTT--
T ss_pred HHHHhc
No 487
>KOG2927|consensus
Probab=42.27 E-value=44 Score=35.69 Aligned_cols=55 Identities=16% Similarity=0.394 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHcC-CchhHHHHhhhhhhhhhhhhcccchhHHH-HHHHHHHHHHHHHHHHHhc
Q psy114 2 SLQWTLIATVLYFEMAFMLLLILP-ILSTQRLHKILKSKFVQGVKTQAGWYFGC-ILVILSLFFLDAIREMRKY 73 (609)
Q Consensus 2 sl~~~lv~~~L~~E~~~~~lL~lP-~p~~~r~~~~~~~~~~~~~~~~~~~~~~~-v~~~l~~lf~Ds~~~~~k~ 73 (609)
.+.|.++.+++ =++++.+.++| +|+..| ++..|+.+ .++|++++|+=+|-|..-|
T Consensus 187 ~~~~~vl~~~f--vl~tlaivLFPLWP~~mR---------------~gvyY~sig~~gfl~~IlvLaIvRlILF 243 (372)
T KOG2927|consen 187 PLMWQVLGVLF--VLVTLAIVLFPLWPRRMR---------------QGVYYLSIGAGGFLAFILVLAIVRLILF 243 (372)
T ss_pred chhHHHHHHHH--HHHHHHHHhcccCcHHHh---------------cceeeeecchhHHHHHHHHHHHHHHHHH
No 488
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=42.25 E-value=35 Score=35.20 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+...+.+|+++||+|+ .+.+....+|+.+.+|+++|+..+.
T Consensus 69 ~~~~~l~~en~~L~~e~------------------~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 69 ASLFDLREENEELKKEL------------------LELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhc
No 489
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.00 E-value=46 Score=32.48 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 517 KEYDRLLKEHEKVQKVVTEQG-DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 517 ~~ak~~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
+.+..+++-++.|++.+..-. ..+....+..|+.+++.|..+++..-+.|..+++++.++-.|++
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~ 67 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQAD 67 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=41.99 E-value=1.5e+02 Score=28.20 Aligned_cols=87 Identities=9% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHH-HHHHHHHhhhh
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSK-TEEELKKEKTN 572 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~-~~~~l~~~~~~ 572 (609)
+.+.|.........-...|+.+.+.|.+++++++..-+.+......--.+-.+.-....++.+.+.+. .++..+.++.+
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~ 108 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQL 108 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy114 573 SAALKNQA 580 (609)
Q Consensus 573 ~~~lkkQ~ 580 (609)
++..|.+|
T Consensus 109 Ie~Ek~~A 116 (154)
T PRK06568 109 IQNQKSTA 116 (154)
T ss_pred HHHHHHHH
No 491
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=41.97 E-value=48 Score=36.86 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCc-chhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy114 528 KVQKVVTEQGDKK-DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGD 606 (609)
Q Consensus 528 ~l~~~~~~~~~~~-~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~ 606 (609)
++...++....+. +..+++.|++||..||++|++......+...+-++ +.|..+....-.|..+|+..|+ +
T Consensus 350 ~~d~~le~~~~~r~e~~~ek~lKeeI~~lk~~l~~~~~~~~~~~~~~~~-----~~~~e~i~~kE~eLe~L~~elD---d 421 (492)
T PF06273_consen 350 KIDLELEHRAVDRPETEEEKFLKEEINALKERLEEEEASSEKSKGSGEE-----ESLREEISQKEKELEKLTRELD---D 421 (492)
T ss_pred HHHHHhhcccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccc-----hhHHHHHHHHHHHHHHHHHHhh---c
Q ss_pred C
Q psy114 607 K 607 (609)
Q Consensus 607 k 607 (609)
|
T Consensus 422 k 422 (492)
T PF06273_consen 422 K 422 (492)
T ss_pred c
No 492
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=41.91 E-value=2.7e+02 Score=27.56 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV-QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l-~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
..+|..-|..=-...+......+.++.+|+.+...+++-|.+-..- ++.+.+...+......+...+-.++++..+++.
T Consensus 75 ~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~A 154 (204)
T PRK09174 75 LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEA 154 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhHH-HHHHHHHHHHHHH
Q psy114 563 EEELKKEKTNSA-ALKNQADSVGKEY 587 (609)
Q Consensus 563 ~~~l~~~~~~~~-~lkkQ~~~l~~ey 587 (609)
++++.+.+.+.. .|+.++..+..++
T Consensus 155 e~~I~~ek~~A~~el~~~a~e~A~~I 180 (204)
T PRK09174 155 EARIAAIKAKAMADVGSIAEETAAAI 180 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.75 E-value=1.1e+02 Score=36.21 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~ 565 (609)
.+..+.....+.++=+....+.++++.+.+.++-..|..+|+.+.-..+. ...-+....++.++..++.++.+....
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea---~~~l~~~~~l~~ql~~l~~~~~~l~~~ 333 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEA---KAVLEQIVNVDNQLNELTFREAEISQL 333 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.......+.+++.|-..|.++-.++..+..++..+
T Consensus 334 ~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~ 368 (726)
T PRK09841 334 YKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPST 368 (726)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHH
No 494
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=41.64 E-value=3.4e+02 Score=26.74 Aligned_cols=118 Identities=9% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~ 564 (609)
+...+-|..|-.++..+.+-...+.++.+.-...|+++...+..-.....=+.++-.+.....+...+-.|+..+-..+.
T Consensus 23 ~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 23 DEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLEN 102 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhc
Q psy114 565 ELKKEKTNSAALKNQADSVGKEY--------DRLLKEHEKVQKVVTE 603 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~ey--------drl~~e~~~l~~~~~~ 603 (609)
+.-..+. +.+||.=++.|.+-| |++++|.++.....++
T Consensus 103 a~~~~ev-~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~E 148 (191)
T PTZ00446 103 MHLHKIA-VNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEE 148 (191)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
No 495
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.59 E-value=2e+02 Score=33.63 Aligned_cols=114 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC----------------CCcchhhcccCHHHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG----------------DKKDDKYQKGDSDEI 552 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~----------------~~~~~~~~~~~~~e~ 552 (609)
..+..-+..+.....+...+..+.+|=-.++-+-+..|..||+.+.+-. ...+.--.+.|.+++
T Consensus 125 ~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl 204 (617)
T PF15070_consen 125 AELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKL 204 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+|+.++...++.++....++..|+.|-+.+..-+.+-...|+.|....+
T Consensus 205 ~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e 254 (617)
T PF15070_consen 205 GELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKE 254 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=41.47 E-value=1.1e+02 Score=27.96 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+..|...|+.|=..+.+...+-+++..|+-.-..=.+.|.+|.|.|..|.-.|..
T Consensus 1 egsLeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLee 55 (134)
T PF15233_consen 1 EGSLEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEE 55 (134)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
No 497
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=41.40 E-value=8.9 Score=33.88 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCCeeeccCCCCcceeecCCcceeEEEEEEecccccccceeEEEEeecCceEEe--eeeEeCCeEEecCCccccCCCcc
Q psy114 333 AFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKV--NAQLLGDVIYCDPMEFTYNSSVS 410 (609)
Q Consensus 333 ~~CP~i~~~~~~p~~~~ip~g~~~~i~l~~~nLp~~~~~~~y~C~f~~~g~~~~~--~a~v~~~~v~C~~~~~~~~~~~~ 410 (609)
..|..|.... +..+=+|..-.+.+.+.............|.|.+....... |..+..+.+.|+.|...-++..-
T Consensus 3 kSC~Eil~~e----PSsvC~ge~f~Vvv~G~GF~~~~~~d~ViC~F~~n~t~~~~~KP~~v~dt~llCPaP~l~~~G~~~ 78 (105)
T PF05587_consen 3 KSCIEILSVE----PSSVCVGESFQVVVRGNGFNNARNVDQVICRFKFNDTKTVDEKPVSVEDTYLLCPAPVLEEPGQTI 78 (105)
T ss_dssp CB------------------------------------------------------------------------------
T ss_pred cceeeEEEEc----CCceECCCceEEEEECccccccCCCCeEEEEEEECCeeEEEeCCcEEcCCEEECCCccccCCCCEE
Q ss_pred eEEEEEEEEECCCCCCCCCCCceeeeeecccc
Q psy114 411 NINASLAVIWGGSKPLDNPDNVHVNIYKCRDL 442 (609)
Q Consensus 411 ~~~v~l~v~~~~~~~ids~~~l~v~LYnCs~~ 442 (609)
.+.|+ ..+|.-+|.+ ++.++=-+|+.|
T Consensus 79 ~v~VS---lNnG~sFiss--~v~Itst~Cs~G 105 (105)
T PF05587_consen 79 FVEVS---LNNGKSFISS--SVTITSTECSNG 105 (105)
T ss_dssp --------------------------------
T ss_pred EEEEE---EcCCEEEecC--CeEEEEEEcCCC
No 498
>KOG4593|consensus
Probab=41.31 E-value=3.8e+02 Score=31.46 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLS 560 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~ 560 (609)
.+.+++...++.-|...+.+...-++|...++-.--.+.++-.+.. .-+++.|+.+|.
T Consensus 428 l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~l----------------------e~~~kdL~s~L~ 485 (716)
T KOG4593|consen 428 LPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKL----------------------EHELKDLQSQLS 485 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 561 KTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 561 ~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.....+.-++.+.+.+..-.+...+|-+.|.+|+..|+.++.
T Consensus 486 ~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 486 SREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG1103|consensus
Probab=41.24 E-value=2.8e+02 Score=29.67 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-----------------------------------------
Q psy114 499 KKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG----------------------------------------- 537 (609)
Q Consensus 499 a~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~----------------------------------------- 537 (609)
+-+.+..+.++.|.|=--+..||+-.+.+++.-.+++.+
T Consensus 142 ~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr 221 (561)
T KOG1103|consen 142 AHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSR 221 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccc
Q ss_pred CCcchhhcccCHH-----------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 538 DKKDDKYQKGDSD-----------EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 538 ~~~~~~~~~~~~~-----------e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+..+++....++ .+++++.|.+-+.-+++..++.-..||...+.|.+-...|-..||.++.-.+
T Consensus 222 ~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq 297 (561)
T KOG1103|consen 222 TKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ 297 (561)
T ss_pred cCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc
No 500
>KOG1265|consensus
Probab=41.23 E-value=1.9e+02 Score=34.75 Aligned_cols=108 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHH--HHHHhhhcCCCcch-hhcccCHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy114 497 ELKKEKTNSAALKSQADSVGKEYDRLLKEHEK--VQKVVTEQGDKKDD-KYQKGDSDEIKRLKEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 497 qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~--l~~~~~~~~~~~~~-~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~ 573 (609)
.++..-.-...+.+.|+..+--+-|.+-|++. +++.+.++...+-. +..-+.+.|.++.|.|+.. +.-+.=+
T Consensus 1060 hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~-----s~i~~~V 1134 (1189)
T KOG1265|consen 1060 HLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNS-----SNIKEFV 1134 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHH-----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~~kk~ 609 (609)
+..|.=++.+.++-|+|.+.|.+..+|+++.+.+.|
T Consensus 1135 ~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~ 1170 (1189)
T KOG1265|consen 1135 EERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALD 1170 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Done!