Query psy114
Match_columns 609
No_of_seqs 454 out of 1027
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oky_A Plexin-A2; transmembran 100.0 1.1E-28 3.7E-33 279.6 11.0 145 157-315 514-660 (681)
2 3oky_A Plexin-A2; transmembran 99.8 3.6E-20 1.2E-24 210.1 9.8 178 272-474 473-658 (681)
3 3ol2_B Plexin-B1; beta-propell 97.5 3.6E-05 1.2E-09 85.0 2.7 41 272-314 459-500 (528)
4 3nvn_B Plexin-C1; beta-propell 97.5 2.2E-05 7.4E-10 84.5 0.8 42 272-315 414-456 (476)
5 3al9_A Plexin-A2; beta-propell 97.4 2.6E-05 9E-10 86.7 0.4 41 272-314 474-515 (539)
6 1olz_A Semaphorin 4D; developm 97.3 7.1E-05 2.4E-09 85.2 2.7 41 272-314 475-516 (663)
7 4fww_A Macrophage-stimulating 97.1 0.00014 4.7E-09 80.8 1.8 38 273-314 478-519 (527)
8 3oky_B Putative uncharacterize 96.7 0.00058 2E-08 75.7 3.1 46 272-319 493-540 (565)
9 4gz8_A Semaphorin-3A; multi-do 96.3 0.00093 3.2E-08 75.8 1.2 34 272-307 493-528 (667)
10 2uzx_B Hepatocyte growth facto 96.3 0.0023 8E-08 73.5 4.4 81 266-367 486-569 (727)
11 2uzx_B Hepatocyte growth facto 95.9 0.00075 2.6E-08 77.6 -1.8 52 435-490 495-550 (727)
12 3nvq_A Semaphorin-7A; beta-pro 95.9 0.0024 8.4E-08 71.2 1.9 39 271-313 441-481 (590)
13 3vkg_A Dynein heavy chain, cyt 95.7 0.086 2.9E-06 69.1 15.4 57 546-602 2010-2066(3245)
14 3na7_A HP0958; flagellar bioge 94.5 0.49 1.7E-05 47.1 13.8 36 487-522 30-65 (256)
15 3hnw_A Uncharacterized protein 94.4 0.3 1E-05 44.1 10.7 57 546-602 78-134 (138)
16 3u59_A Tropomyosin beta chain; 93.9 0.57 1.9E-05 39.9 10.9 46 556-601 29-74 (101)
17 3oja_B Anopheles plasmodium-re 93.3 0.54 1.8E-05 52.2 12.7 35 568-602 548-582 (597)
18 3na7_A HP0958; flagellar bioge 93.1 0.81 2.8E-05 45.5 12.4 48 483-530 19-66 (256)
19 2dfs_A Myosin-5A; myosin-V, in 93.1 0.13 4.6E-06 61.4 7.7 29 570-598 990-1018(1080)
20 4fww_A Macrophage-stimulating 92.7 0.022 7.6E-07 62.9 0.3 35 437-474 484-518 (527)
21 3mq7_A Bone marrow stromal ant 92.7 1.5 5.2E-05 37.7 11.4 73 496-583 32-104 (121)
22 2dfs_A Myosin-5A; myosin-V, in 92.5 0.19 6.6E-06 60.0 8.0 53 550-602 984-1040(1080)
23 3oja_B Anopheles plasmodium-re 92.5 0.26 9E-06 54.7 8.7 37 565-601 538-574 (597)
24 1ic2_A Tropomyosin alpha chain 92.4 0.47 1.6E-05 38.7 7.9 57 549-605 19-75 (81)
25 3hnw_A Uncharacterized protein 92.2 0.35 1.2E-05 43.6 7.5 54 548-601 73-126 (138)
26 1c1g_A Tropomyosin; contractIl 92.1 1.7 5.8E-05 41.9 13.1 6 496-501 20-25 (284)
27 2no2_A HIP-I, huntingtin-inter 92.0 2.5 8.5E-05 36.3 12.2 95 490-592 2-103 (107)
28 1m1j_C Fibrinogen gamma chain; 91.9 1.8 6.1E-05 46.0 13.6 100 498-601 36-135 (409)
29 3u1c_A Tropomyosin alpha-1 cha 91.5 3.5 0.00012 35.0 12.6 8 485-492 5-12 (101)
30 3oja_A Leucine-rich immune mol 91.5 2.1 7E-05 46.3 14.2 54 550-603 414-467 (487)
31 3u59_A Tropomyosin beta chain; 90.8 2.2 7.4E-05 36.2 10.7 39 484-522 4-42 (101)
32 3q8t_A Beclin-1; autophagy, AT 90.5 0.88 3E-05 38.4 7.8 58 543-600 18-75 (96)
33 1c1g_A Tropomyosin; contractIl 90.0 3.7 0.00013 39.4 13.3 16 573-588 239-254 (284)
34 2yy0_A C-MYC-binding protein; 90.0 0.42 1.4E-05 35.8 4.8 32 571-602 19-50 (53)
35 3al9_A Plexin-A2; beta-propell 89.4 0.073 2.5E-06 59.0 0.2 41 432-474 474-514 (539)
36 3u1c_A Tropomyosin alpha-1 cha 89.3 3.3 0.00011 35.1 10.5 20 505-524 4-23 (101)
37 2jee_A YIIU; FTSZ, septum, coi 89.3 1.2 4.2E-05 36.1 7.3 51 545-602 22-72 (81)
38 3ol1_A Vimentin; structural ge 88.9 5.1 0.00018 34.9 11.8 97 491-602 22-118 (119)
39 3vkg_A Dynein heavy chain, cyt 88.0 2.8 9.6E-05 55.3 13.3 34 494-527 1932-1965(3245)
40 3a7p_A Autophagy protein 16; c 88.0 2.6 8.8E-05 38.3 9.3 54 545-598 77-130 (152)
41 2cxk_A Camta1, calmodulin bind 86.8 0.46 1.6E-05 40.0 3.5 59 178-241 4-63 (95)
42 3nvn_B Plexin-C1; beta-propell 86.5 0.18 6.1E-06 54.3 1.0 51 432-485 414-464 (476)
43 3ol2_B Plexin-B1; beta-propell 86.3 0.16 5.6E-06 55.9 0.6 53 432-487 459-511 (528)
44 3mq9_A Bone marrow stromal ant 84.6 3.6 0.00012 44.1 10.3 69 494-577 402-470 (471)
45 3a7o_A Autophagy protein 16; c 84.3 3.9 0.00013 32.0 7.2 55 548-602 16-70 (75)
46 3o0z_A RHO-associated protein 84.2 15 0.0005 33.9 12.5 122 481-602 5-153 (168)
47 1olz_A Semaphorin 4D; developm 83.2 0.26 8.9E-06 55.9 0.4 41 432-474 475-515 (663)
48 2v4h_A NF-kappa-B essential mo 82.4 3.4 0.00012 35.3 6.9 10 483-492 25-34 (110)
49 3hhm_B NISH2 P85alpha; PI3KCA, 82.4 7.7 0.00026 40.6 11.3 96 504-599 154-254 (373)
50 4h22_A Leucine-rich repeat fli 82.3 9.2 0.00031 32.3 9.4 45 546-590 33-77 (103)
51 2fxo_A Myosin heavy chain, car 82.2 21 0.00071 31.4 12.4 109 490-603 14-122 (129)
52 2v71_A Nuclear distribution pr 81.7 20 0.00069 33.7 12.7 92 505-600 19-110 (189)
53 3ghg_A Fibrinogen alpha chain; 81.4 6.7 0.00023 42.3 10.3 36 483-518 54-89 (562)
54 2efr_A General control protein 81.4 21 0.00072 32.6 12.3 45 489-533 42-86 (155)
55 3q8t_A Beclin-1; autophagy, AT 81.2 4.6 0.00016 33.9 7.3 54 548-601 37-90 (96)
56 3qh9_A Liprin-beta-2; coiled-c 80.3 4.4 0.00015 32.7 6.4 51 543-593 26-76 (81)
57 3ol1_A Vimentin; structural ge 79.1 15 0.00052 31.9 10.3 27 503-529 20-46 (119)
58 3a7p_A Autophagy protein 16; c 78.4 5.5 0.00019 36.1 7.2 16 572-587 111-126 (152)
59 3jsv_C NF-kappa-B essential mo 78.3 3.2 0.00011 34.5 5.3 24 508-531 7-30 (94)
60 1fio_A SSO1 protein; four heli 78.0 23 0.00078 33.0 12.1 28 574-601 80-107 (196)
61 3nmd_A CGMP dependent protein 77.9 6.6 0.00022 31.1 6.7 48 552-599 21-68 (72)
62 1ic2_A Tropomyosin alpha chain 77.8 13 0.00044 30.0 8.8 25 547-571 45-69 (81)
63 3tnu_B Keratin, type II cytosk 77.5 31 0.0011 30.2 12.0 31 571-601 89-119 (129)
64 3cl3_D NF-kappa-B essential mo 76.3 11 0.00039 32.9 8.4 57 546-602 51-108 (130)
65 2jee_A YIIU; FTSZ, septum, coi 76.1 9.4 0.00032 30.9 7.3 10 590-599 53-62 (81)
66 1s94_A S-syntaxin; three helix 75.8 46 0.0016 30.6 13.4 29 574-602 122-150 (180)
67 3oky_B Putative uncharacterize 75.0 0.49 1.7E-05 52.4 -0.7 42 431-474 492-534 (565)
68 2zqm_A Prefoldin beta subunit 74.7 15 0.0005 31.3 9.0 30 570-599 83-112 (117)
69 3tnu_A Keratin, type I cytoske 74.2 34 0.0012 30.0 11.4 31 571-601 91-121 (131)
70 3l4q_C Phosphatidylinositol 3- 73.9 36 0.0012 31.5 11.7 95 505-599 46-145 (170)
71 3oja_A Leucine-rich immune mol 73.8 10 0.00034 40.8 9.4 33 568-600 453-485 (487)
72 4dzn_A Coiled-coil peptide CC- 72.9 6.3 0.00022 25.2 4.3 27 551-577 3-29 (33)
73 1nfn_A Apolipoprotein E3; lipi 72.8 9.7 0.00033 36.0 7.9 56 547-602 103-160 (191)
74 3iox_A AGI/II, PA; alpha helix 72.7 25 0.00085 37.8 11.6 28 566-597 68-95 (497)
75 1f5n_A Interferon-induced guan 72.5 17 0.00059 40.4 11.0 21 581-601 563-583 (592)
76 4h22_A Leucine-rich repeat fli 72.4 7.9 0.00027 32.7 6.2 57 546-602 26-82 (103)
77 2dq3_A Seryl-tRNA synthetase; 71.9 16 0.00054 38.9 10.2 30 544-573 69-98 (425)
78 4emc_A Monopolin complex subun 71.5 5.6 0.00019 37.3 5.6 20 545-564 22-41 (190)
79 1ez3_A Syntaxin-1A; three heli 71.1 43 0.0015 28.7 11.3 28 573-600 90-117 (127)
80 1gs9_A Apolipoprotein E, APOE4 70.2 23 0.00079 32.6 9.6 55 548-602 104-160 (165)
81 3viq_B Mating-type switching p 69.8 16 0.00055 29.8 7.3 56 547-602 5-65 (85)
82 2dq0_A Seryl-tRNA synthetase; 69.6 15 0.00052 39.4 9.5 13 549-561 75-87 (455)
83 3etw_A Adhesin A; antiparallel 69.5 56 0.0019 28.4 11.5 24 485-508 5-28 (119)
84 3bas_A Myosin heavy chain, str 69.5 20 0.00068 29.5 8.1 39 552-590 16-54 (89)
85 1fxk_A Prefoldin; archaeal pro 69.0 21 0.00073 29.8 8.5 36 484-519 3-38 (107)
86 3mq7_A Bone marrow stromal ant 68.6 18 0.00063 31.1 7.7 38 565-602 72-109 (121)
87 4gz8_A Semaphorin-3A; multi-do 68.5 1.2 4.1E-05 50.4 0.5 35 431-469 492-527 (667)
88 3s4r_A Vimentin; alpha-helix, 67.0 27 0.00092 29.0 8.5 32 570-601 55-86 (93)
89 3cve_A Homer protein homolog 1 66.6 22 0.00075 28.1 7.3 54 549-602 13-66 (72)
90 1deq_A Fibrinogen (alpha chain 65.9 52 0.0018 34.1 11.9 13 591-603 178-190 (390)
91 2efk_A CDC42-interacting prote 65.5 1.1E+02 0.0036 30.1 14.7 35 549-583 164-198 (301)
92 3haj_A Human pacsin2 F-BAR; pa 65.3 49 0.0017 35.6 12.6 45 549-593 184-228 (486)
93 2x3v_A Syndapin I, protein kin 65.2 93 0.0032 31.3 14.2 43 549-591 182-224 (337)
94 1wle_A Seryl-tRNA synthetase; 65.1 20 0.00067 39.1 9.3 20 483-502 42-61 (501)
95 2ocy_A RAB guanine nucleotide 65.0 81 0.0028 28.6 11.8 31 487-517 4-34 (154)
96 3ghg_C Fibrinogen gamma chain; 64.0 78 0.0027 33.4 13.2 95 504-602 42-136 (411)
97 1d7m_A Cortexillin I; coiled-c 63.5 60 0.0021 26.5 9.4 43 487-529 2-44 (101)
98 2efr_A General control protein 62.9 62 0.0021 29.4 10.7 41 548-588 75-115 (155)
99 3cvf_A Homer-3, homer protein 62.5 31 0.0011 27.8 7.6 54 549-602 19-72 (79)
100 3etw_A Adhesin A; antiparallel 62.4 60 0.0021 28.2 10.0 12 553-564 47-58 (119)
101 3o0z_A RHO-associated protein 62.3 96 0.0033 28.5 13.5 9 548-556 102-110 (168)
102 2xv5_A Lamin-A/C; structural p 62.0 28 0.00096 27.6 7.2 36 565-600 13-48 (74)
103 4ani_A Protein GRPE; chaperone 61.9 10 0.00035 36.5 5.5 40 543-582 59-98 (213)
104 3viq_B Mating-type switching p 61.7 21 0.00072 29.2 6.5 48 552-599 3-55 (85)
105 3qne_A Seryl-tRNA synthetase, 61.7 19 0.00066 38.9 8.3 17 548-564 76-92 (485)
106 1deq_A Fibrinogen (alpha chain 61.5 67 0.0023 33.3 11.8 41 484-524 58-98 (390)
107 3nvq_A Semaphorin-7A; beta-pro 61.0 1.6 5.3E-05 48.7 -0.4 39 432-473 442-480 (590)
108 1ses_A Seryl-tRNA synthetase; 60.8 18 0.00062 38.4 7.9 53 549-601 41-94 (421)
109 2v4h_A NF-kappa-B essential mo 60.6 31 0.0011 29.4 7.6 49 549-601 44-106 (110)
110 3m91_A Proteasome-associated A 60.6 13 0.00045 27.4 4.7 35 549-583 15-49 (51)
111 2k48_A Nucleoprotein; viral pr 60.6 27 0.00094 29.4 7.1 61 542-602 34-99 (107)
112 4etp_A Kinesin-like protein KA 60.5 13 0.00046 39.2 6.8 54 545-598 5-58 (403)
113 2w6a_A ARF GTPase-activating p 60.4 34 0.0012 25.8 6.8 40 561-600 17-56 (63)
114 3aco_A Pacsin2, protein kinase 60.0 75 0.0026 32.3 12.4 45 549-593 191-235 (350)
115 3sja_C Golgi to ER traffic pro 58.9 23 0.00079 27.4 6.0 48 551-602 7-56 (65)
116 2v66_B Nuclear distribution pr 57.8 26 0.00087 30.1 6.7 21 548-568 8-28 (111)
117 4emc_A Monopolin complex subun 57.3 31 0.0011 32.2 7.8 28 506-533 9-36 (190)
118 1gd2_E Transcription factor PA 57.3 15 0.00052 28.9 4.8 35 552-586 31-65 (70)
119 2avr_X Adhesion A; antiparalle 57.1 89 0.003 27.0 10.0 41 486-526 6-46 (119)
120 1wle_A Seryl-tRNA synthetase; 57.0 31 0.0011 37.5 9.1 31 572-602 117-147 (501)
121 3htk_A Structural maintenance 56.2 59 0.002 24.1 8.5 26 553-578 29-54 (60)
122 3s9g_A Protein hexim1; cyclin 56.0 40 0.0014 28.1 7.3 52 549-600 36-87 (104)
123 2lw1_A ABC transporter ATP-bin 55.8 30 0.001 28.3 6.7 60 543-602 22-87 (89)
124 3swk_A Vimentin; cytoskeleton, 55.6 82 0.0028 25.6 11.1 13 569-581 47-59 (86)
125 2efk_A CDC42-interacting prote 55.6 1.6E+02 0.0054 28.8 15.0 26 572-597 173-198 (301)
126 3i00_A HIP-I, huntingtin-inter 55.6 87 0.003 27.2 10.0 19 580-598 101-119 (120)
127 3tnu_A Keratin, type I cytoske 55.6 24 0.00081 31.1 6.5 18 580-597 93-110 (131)
128 1g6u_A Domain swapped dimer; d 55.5 25 0.00086 24.2 5.0 14 551-564 21-34 (48)
129 1deb_A APC protein, adenomatou 55.2 21 0.0007 26.0 4.7 37 547-583 14-50 (54)
130 2v71_A Nuclear distribution pr 54.7 83 0.0029 29.5 10.3 23 580-602 132-154 (189)
131 3w03_C DNA repair protein XRCC 54.6 12 0.00042 35.1 4.6 30 573-602 154-183 (184)
132 4etp_A Kinesin-like protein KA 54.2 21 0.00071 37.7 6.9 53 550-602 3-55 (403)
133 3trt_A Vimentin; cytoskeleton, 53.5 35 0.0012 26.9 6.6 41 550-590 35-75 (77)
134 2fxo_A Myosin heavy chain, car 53.5 1.1E+02 0.0039 26.5 12.1 35 549-583 89-123 (129)
135 2efl_A Formin-binding protein 53.4 1.7E+02 0.0058 28.5 14.2 34 550-583 172-205 (305)
136 3nmd_A CGMP dependent protein 52.5 41 0.0014 26.5 6.6 11 579-589 55-65 (72)
137 1hs7_A Syntaxin VAM3; UP-and-D 52.3 33 0.0011 28.7 6.4 52 546-602 36-88 (97)
138 3vem_A Helicase protein MOM1; 52.2 41 0.0014 28.9 7.0 18 578-595 68-85 (115)
139 2wt7_A Proto-oncogene protein 52.1 38 0.0013 25.8 6.4 28 572-599 31-58 (63)
140 2dq0_A Seryl-tRNA synthetase; 51.5 25 0.00086 37.7 7.1 55 548-602 43-100 (455)
141 3abh_A Pacsin2, protein kinase 51.5 64 0.0022 32.1 9.9 42 550-591 192-233 (312)
142 1lwu_C Fibrinogen gamma chain; 51.5 30 0.001 35.3 7.4 49 553-601 8-56 (323)
143 1hjb_A Ccaat/enhancer binding 51.1 62 0.0021 26.5 7.8 24 572-595 51-74 (87)
144 3u06_A Protein claret segregat 51.1 21 0.00071 37.8 6.3 53 547-599 7-59 (412)
145 1g6u_A Domain swapped dimer; d 50.7 18 0.0006 25.0 3.6 17 546-562 23-39 (48)
146 2efl_A Formin-binding protein 50.4 69 0.0024 31.5 9.9 30 568-597 176-205 (305)
147 2ic6_A Nucleocapsid protein; h 50.1 59 0.002 26.0 7.2 60 543-602 5-69 (78)
148 2avr_X Adhesion A; antiparalle 50.0 1.2E+02 0.0042 26.2 9.7 40 553-593 47-86 (119)
149 1t2k_D Cyclic-AMP-dependent tr 49.7 45 0.0015 25.1 6.4 21 578-598 36-56 (61)
150 1dn1_B Syntaxin 1A, syntaxin b 49.4 1E+02 0.0035 30.3 10.8 29 572-600 112-140 (267)
151 3uul_A Utrophin; spectrin repe 49.3 1E+02 0.0035 25.4 9.5 31 572-602 79-109 (118)
152 3i00_A HIP-I, huntingtin-inter 49.1 44 0.0015 29.1 7.0 44 543-589 15-58 (120)
153 4gkw_A Spindle assembly abnorm 48.9 54 0.0018 28.7 7.4 27 572-598 47-73 (167)
154 2oto_A M protein; helical coil 48.6 32 0.0011 31.1 6.4 13 521-533 26-38 (155)
155 3lss_A Seryl-tRNA synthetase; 48.3 71 0.0024 34.5 10.0 11 507-517 48-58 (484)
156 3tnu_B Keratin, type II cytosk 48.2 19 0.00065 31.6 4.6 15 549-563 35-49 (129)
157 1jcd_A Major outer membrane li 48.1 38 0.0013 25.0 5.4 36 548-583 9-44 (52)
158 1l8d_A DNA double-strand break 47.8 1.2E+02 0.0042 25.3 10.4 38 551-588 65-102 (112)
159 2v0o_A FCHO2, FCH domain only 47.7 1.6E+02 0.0054 28.4 12.0 20 569-588 175-194 (276)
160 3azd_A Short alpha-tropomyosin 47.3 9.6 0.00033 26.1 2.0 31 571-601 4-34 (37)
161 3qne_A Seryl-tRNA synthetase, 47.2 34 0.0012 37.0 7.3 54 549-602 46-102 (485)
162 3bas_A Myosin heavy chain, str 47.0 50 0.0017 27.0 6.7 60 543-602 14-80 (89)
163 4dk0_A Putative MACA; alpha-ha 46.8 48 0.0017 33.7 8.3 13 571-583 129-141 (369)
164 1ci6_A Transcription factor AT 46.8 52 0.0018 25.1 6.3 19 572-590 38-56 (63)
165 3efg_A Protein SLYX homolog; x 46.6 60 0.002 26.0 6.9 48 548-602 12-59 (78)
166 1cun_A Protein (alpha spectrin 46.5 1.7E+02 0.0059 26.6 14.4 60 543-602 139-209 (213)
167 1x79_B RAB GTPase binding effe 46.4 92 0.0032 26.7 8.4 49 547-598 49-97 (112)
168 3r2p_A Apolipoprotein A-I; amp 46.3 62 0.0021 30.0 8.2 90 498-602 51-143 (185)
169 2oto_A M protein; helical coil 46.2 53 0.0018 29.6 7.5 21 511-531 51-71 (155)
170 1m1j_B Fibrinogen beta chain; 46.2 1.6E+02 0.0055 31.5 12.2 27 571-597 168-194 (464)
171 2yy0_A C-MYC-binding protein; 45.6 30 0.001 25.6 4.6 14 550-563 19-32 (53)
172 1j1d_C Troponin I, TNI; THIN f 45.6 49 0.0017 29.3 6.8 35 488-527 16-50 (133)
173 1x8y_A Lamin A/C; structural p 45.5 77 0.0026 25.7 7.6 36 565-600 36-71 (86)
174 3tul_A Cell invasion protein S 45.3 1.6E+02 0.0054 26.4 9.9 16 482-497 4-19 (158)
175 3aon_A V-type sodium ATPase su 45.1 44 0.0015 32.0 7.1 51 545-602 12-62 (217)
176 3q0x_A Centriole protein; cent 45.1 35 0.0012 33.1 6.3 47 548-594 176-222 (228)
177 3v86_A De novo design helix; c 45.1 17 0.00058 22.2 2.5 17 548-564 5-21 (27)
178 4gkw_A Spindle assembly abnorm 45.0 1.6E+02 0.0054 25.8 11.5 39 495-533 38-76 (167)
179 1use_A VAsp, vasodilator-stimu 44.9 50 0.0017 23.6 5.3 24 550-573 7-31 (45)
180 2wt7_B Transcription factor MA 44.6 34 0.0012 28.2 5.2 18 492-509 23-40 (90)
181 2eqb_B RAB guanine nucleotide 44.0 74 0.0025 26.6 7.2 20 584-603 75-94 (97)
182 2ve7_A Kinetochore protein HEC 44.0 27 0.00091 35.6 5.6 12 515-526 151-162 (315)
183 1t6f_A Geminin; coiled-coil, c 43.5 44 0.0015 22.5 4.6 15 550-564 7-21 (37)
184 1uii_A Geminin; human, DNA rep 43.2 59 0.002 26.3 6.2 35 565-599 40-74 (83)
185 3lay_A Zinc resistance-associa 42.8 1.3E+02 0.0043 27.9 9.5 9 503-511 78-86 (175)
186 3plt_A Sphingolipid long chain 42.7 2.4E+02 0.0083 27.2 13.1 104 481-590 61-173 (234)
187 1t3j_A Mitofusin 1; coiled coi 42.7 46 0.0016 27.7 5.8 41 548-592 52-92 (96)
188 1gk4_A Vimentin; intermediate 42.6 91 0.0031 25.1 7.6 33 568-600 37-69 (84)
189 1jnm_A Proto-oncogene C-JUN; B 42.4 33 0.0011 26.0 4.6 25 574-598 32-56 (62)
190 2zuo_A MVP, major vault protei 42.1 1.4E+02 0.0047 34.3 11.3 56 476-532 642-697 (861)
191 3uun_A Dystrophin; triple heli 42.1 1.4E+02 0.0048 24.4 10.0 31 572-602 79-109 (119)
192 3d5a_X RF1, peptide chain rele 41.9 57 0.0019 33.7 7.6 15 517-531 29-43 (354)
193 3a5c_G V-type ATP synthase sub 41.6 53 0.0018 31.6 7.1 46 558-603 10-55 (223)
194 1gk4_A Vimentin; intermediate 41.3 75 0.0026 25.6 6.9 19 573-591 59-77 (84)
195 3s84_A Apolipoprotein A-IV; fo 41.0 2.7E+02 0.0094 27.4 14.3 40 548-587 86-126 (273)
196 3cvf_A Homer-3, homer protein 40.6 90 0.0031 25.0 7.0 33 544-576 21-53 (79)
197 2bzb_A Conserved domain protei 40.5 29 0.00099 26.6 3.9 46 547-599 5-50 (62)
198 3lss_A Seryl-tRNA synthetase; 40.4 49 0.0017 35.8 7.2 19 576-594 116-134 (484)
199 2c0s_A Conserved domain protei 40.4 31 0.001 26.6 4.1 46 547-599 5-50 (64)
200 4b4t_K 26S protease regulatory 40.2 31 0.001 36.7 5.6 47 546-599 45-91 (428)
201 1nkp_B MAX protein, MYC proto- 40.0 46 0.0016 26.6 5.4 34 569-602 45-78 (83)
202 4dyl_A Tyrosine-protein kinase 39.8 2.5E+02 0.0084 29.2 12.6 37 550-586 164-200 (406)
203 3s84_A Apolipoprotein A-IV; fo 39.3 2.6E+02 0.0089 27.5 11.9 39 548-586 64-103 (273)
204 3uun_A Dystrophin; triple heli 39.2 1.6E+02 0.0054 24.1 9.3 36 491-526 38-73 (119)
205 2p22_C Protein SRN2; endosome, 39.1 2.2E+02 0.0074 26.7 10.7 92 505-598 92-185 (192)
206 3swk_A Vimentin; cytoskeleton, 39.1 69 0.0024 26.0 6.3 34 555-588 5-38 (86)
207 4e61_A Protein BIM1; EB1-like 39.1 56 0.0019 27.8 5.8 30 557-586 11-40 (106)
208 2wt7_B Transcription factor MA 38.9 1.6E+02 0.0056 24.1 9.6 26 572-597 63-88 (90)
209 1go4_E MAD1 (mitotic arrest de 38.6 37 0.0013 28.5 4.6 31 572-602 13-43 (100)
210 3mov_A Lamin-B1; LMNB1, B-type 38.2 1.6E+02 0.0053 24.4 8.4 32 569-600 49-80 (95)
211 2ic9_A Nucleocapsid protein; h 38.2 1.1E+02 0.0038 25.4 7.3 60 543-602 5-69 (96)
212 1go4_E MAD1 (mitotic arrest de 38.0 1.5E+02 0.0051 24.9 8.2 16 545-560 28-43 (100)
213 1nlw_A MAD protein, MAX dimeri 38.0 53 0.0018 26.3 5.4 35 568-602 44-78 (80)
214 1qzv_F Plant photosystem I: su 37.8 21 0.00073 31.2 3.1 42 550-591 13-57 (154)
215 1gk6_A Vimentin; intermediate 37.2 60 0.0021 24.4 5.3 30 571-600 14-43 (59)
216 1gd2_E Transcription factor PA 37.1 60 0.002 25.4 5.3 29 572-600 37-65 (70)
217 2l7b_A Apolipoprotein E, APO-E 36.8 82 0.0028 31.9 7.9 57 546-602 110-168 (307)
218 2ke4_A CDC42-interacting prote 36.5 45 0.0015 27.9 4.9 29 574-602 58-86 (98)
219 1m1j_A Fibrinogen alpha subuni 36.1 3E+02 0.01 29.2 11.9 97 483-590 55-151 (491)
220 3vlc_E Golgi to ER traffic pro 36.1 52 0.0018 27.3 5.0 50 549-602 29-80 (94)
221 3s4r_A Vimentin; alpha-helix, 36.0 1.8E+02 0.0062 23.8 9.8 31 483-513 10-40 (93)
222 2eqb_B RAB guanine nucleotide 35.9 1.9E+02 0.0065 24.1 10.4 14 553-566 50-63 (97)
223 1ise_A Ribosome recycling fact 35.8 92 0.0032 29.1 7.4 31 543-573 151-182 (185)
224 1gmj_A ATPase inhibitor; coile 35.3 1.3E+02 0.0043 24.5 7.1 26 572-597 52-77 (84)
225 1j1e_C Troponin I, TNI; THIN f 35.3 92 0.0031 29.0 7.2 36 487-527 15-50 (180)
226 1fxk_A Prefoldin; archaeal pro 35.1 1E+02 0.0036 25.3 7.2 31 490-520 2-32 (107)
227 3jsv_C NF-kappa-B essential mo 35.0 68 0.0023 26.6 5.6 30 572-601 55-84 (94)
228 3a7o_A Autophagy protein 16; c 35.0 88 0.003 24.4 5.8 42 551-599 33-74 (75)
229 3r4h_A Coiled coil helix CC-TE 34.9 67 0.0023 20.6 4.2 27 551-577 3-29 (34)
230 1yke_B RNA polymerase II holoe 34.8 1.9E+02 0.0066 26.0 9.2 35 549-583 91-125 (151)
231 1dkg_A Nucleotide exchange fac 34.7 55 0.0019 30.9 5.8 35 547-581 39-77 (197)
232 2nrj_A HBL B protein; enteroto 34.7 1.1E+02 0.0038 31.3 8.6 21 568-588 173-193 (346)
233 2y3a_B Phosphatidylinositol 3- 34.7 2.6E+02 0.0089 28.0 11.2 68 507-574 49-121 (302)
234 2k48_A Nucleoprotein; viral pr 34.4 1.8E+02 0.0063 24.4 8.1 54 549-602 34-92 (107)
235 3r6n_A Desmoplakin; spectrin r 34.4 1.5E+02 0.0052 31.5 9.9 33 551-583 236-268 (450)
236 4e81_A Chaperone protein DNAK; 34.3 2.9E+02 0.0099 26.1 11.1 44 549-594 171-214 (219)
237 3fpp_A Macrolide-specific effl 34.3 85 0.0029 31.4 7.7 28 488-515 68-95 (341)
238 3mov_A Lamin-B1; LMNB1, B-type 33.9 1.3E+02 0.0044 24.9 7.3 22 496-517 12-33 (95)
239 2lw1_A ABC transporter ATP-bin 33.9 93 0.0032 25.2 6.4 23 558-580 23-45 (89)
240 3uul_A Utrophin; spectrin repe 33.5 2E+02 0.0067 23.5 9.6 36 491-526 38-73 (118)
241 1vcs_A Vesicle transport throu 32.8 1.2E+02 0.004 25.4 7.0 25 504-528 35-59 (102)
242 1x8y_A Lamin A/C; structural p 32.8 75 0.0026 25.7 5.6 20 573-592 61-80 (86)
243 3ghg_A Fibrinogen alpha chain; 32.7 3.4E+02 0.012 29.4 11.9 11 592-602 176-186 (562)
244 3he5_B Synzip2; heterodimeric 32.7 1.3E+02 0.0043 21.1 6.2 24 570-593 23-46 (52)
245 3v1a_A Computational design, M 32.5 23 0.00078 25.8 2.0 41 548-590 6-46 (48)
246 4fi5_A Nucleoprotein; structur 32.4 1.4E+02 0.0048 25.4 7.2 59 544-602 23-86 (113)
247 1is1_A Ribosome recycling fact 32.2 1.3E+02 0.0045 28.0 7.9 31 543-573 151-182 (185)
248 2w6b_A RHO guanine nucleotide 32.1 70 0.0024 23.7 4.5 30 547-576 14-46 (56)
249 1u4q_A Spectrin alpha chain, b 31.9 3.6E+02 0.012 26.1 14.4 60 543-602 248-318 (322)
250 2xhe_B Syntaxin1; exocytosis, 31.8 3.4E+02 0.012 26.4 11.6 26 574-599 134-159 (279)
251 2zdi_C Prefoldin subunit alpha 31.8 2.7E+02 0.0092 24.6 12.1 45 552-603 100-144 (151)
252 2xdj_A Uncharacterized protein 31.8 64 0.0022 26.1 4.9 41 552-592 29-69 (83)
253 2a01_A Apolipoprotein A-I; fou 31.7 33 0.0011 33.4 3.9 33 570-602 109-142 (243)
254 2wt7_A Proto-oncogene protein 31.5 1.6E+02 0.0056 22.1 7.0 19 572-590 38-56 (63)
255 2dq3_A Seryl-tRNA synthetase; 31.3 82 0.0028 33.3 7.1 14 549-562 81-94 (425)
256 1ud0_A HSC70, 70 kDa heat-shoc 31.1 2.3E+02 0.0077 23.5 10.1 44 550-593 32-76 (113)
257 3u06_A Protein claret segregat 31.0 90 0.0031 32.9 7.3 51 552-602 5-55 (412)
258 2ke4_A CDC42-interacting prote 30.9 2.3E+02 0.0079 23.5 8.8 31 479-509 12-42 (98)
259 1ykh_B RNA polymerase II holoe 30.9 2.7E+02 0.0092 24.3 9.6 35 549-583 91-125 (132)
260 2pjw_H Uncharacterized protein 30.8 64 0.0022 26.5 4.8 51 543-593 35-85 (88)
261 3ghg_B Fibrinogen beta chain; 30.7 3.3E+02 0.011 29.0 11.4 29 570-598 162-190 (461)
262 1lwu_C Fibrinogen gamma chain; 30.6 71 0.0024 32.6 6.2 42 549-590 11-52 (323)
263 1dd5_A Ribosome recycling fact 30.6 1.5E+02 0.005 27.7 7.9 31 543-573 151-182 (185)
264 1t2k_D Cyclic-AMP-dependent tr 30.2 1.2E+02 0.0041 22.7 6.0 16 575-590 40-55 (61)
265 2f1m_A Acriflavine resistance 30.1 2.3E+02 0.0079 27.2 9.9 23 549-571 97-119 (277)
266 2wvr_A Geminin; DNA replicatio 30.0 87 0.003 29.6 6.0 16 577-592 145-160 (209)
267 1wqg_A Ribosome recycling fact 29.7 1.3E+02 0.0045 28.0 7.4 32 543-574 151-183 (185)
268 1wt6_A Myotonin-protein kinase 29.6 1.8E+02 0.0062 23.3 7.0 27 557-583 45-71 (81)
269 4ani_A Protein GRPE; chaperone 29.5 70 0.0024 30.6 5.6 30 572-601 67-96 (213)
270 1u5p_A Spectrin alpha chain, b 29.5 3.2E+02 0.011 24.9 10.4 92 511-602 4-106 (216)
271 1gmj_A ATPase inhibitor; coile 29.4 1.3E+02 0.0046 24.3 6.3 24 560-583 54-77 (84)
272 1s35_A Beta-I spectrin, spectr 29.4 3.3E+02 0.011 24.8 15.4 60 543-602 140-210 (214)
273 3q0x_A Centriole protein; cent 29.3 1.4E+02 0.0047 28.9 7.6 54 548-601 169-222 (228)
274 1nkp_A C-MYC, MYC proto-oncoge 29.0 89 0.003 25.4 5.4 32 571-602 52-83 (88)
275 2wvr_A Geminin; DNA replicatio 28.8 1E+02 0.0036 29.0 6.4 22 543-564 115-136 (209)
276 3rrk_A V-type ATPase 116 kDa s 28.3 1.3E+02 0.0046 30.4 8.0 52 547-598 223-275 (357)
277 3ni0_A Bone marrow stromal ant 28.0 1.9E+02 0.0064 23.9 7.0 28 496-523 25-52 (99)
278 3brv_B NF-kappa-B essential mo 27.9 1.5E+02 0.0052 23.0 6.1 21 514-534 5-25 (70)
279 3ls0_A SLL1638 protein, PSBQ; 27.9 2.6E+02 0.0089 24.6 8.5 20 503-522 20-39 (133)
280 3htk_A Structural maintenance 27.8 1.7E+02 0.0059 21.4 6.5 50 551-600 6-55 (60)
281 2qyw_A Vesicle transport throu 27.7 1.7E+02 0.0057 24.4 7.1 13 511-523 53-65 (102)
282 4fye_A SIDF, inhibitor of grow 27.7 5.1E+02 0.017 26.5 12.5 40 548-587 521-560 (761)
283 3mq9_A Bone marrow stromal ant 27.6 5.4E+02 0.018 26.8 13.7 17 548-564 402-418 (471)
284 2inr_A DNA topoisomerase 4 sub 27.5 2.6E+02 0.0089 30.3 10.2 14 551-564 455-468 (514)
285 3iox_A AGI/II, PA; alpha helix 27.4 4.9E+02 0.017 27.9 12.1 31 489-526 9-39 (497)
286 3m9b_A Proteasome-associated A 27.2 1E+02 0.0035 30.2 6.3 25 574-598 71-95 (251)
287 2wb7_A PT26-6P; extra chromoso 27.2 4.6E+02 0.016 28.2 11.8 28 485-512 409-436 (526)
288 1fxk_C Protein (prefoldin); ar 26.9 3E+02 0.01 23.5 12.3 42 552-600 90-131 (133)
289 3tul_A Cell invasion protein S 26.6 3.2E+02 0.011 24.4 8.7 11 496-506 27-37 (158)
290 2p22_A Suppressor protein STP2 26.6 3.8E+02 0.013 24.6 11.6 100 488-587 48-159 (174)
291 2p32_A Heat shock 70 kDa prote 26.3 2.9E+02 0.01 23.2 10.3 45 549-593 45-90 (120)
292 3pe0_A Plectin; cytoskeleton, 26.3 1.3E+02 0.0044 29.8 7.2 31 484-514 43-73 (283)
293 4gfq_A Ribosome-recycling fact 26.3 1.9E+02 0.0065 27.5 7.9 11 545-555 177-187 (209)
294 2a01_A Apolipoprotein A-I; fou 26.0 1.6E+02 0.0056 28.4 7.7 89 486-578 92-183 (243)
295 1jcd_A Major outer membrane li 25.9 2E+02 0.0068 21.1 6.3 32 550-581 4-35 (52)
296 1l8d_A DNA double-strand break 25.7 1.3E+02 0.0046 25.0 6.2 57 546-602 20-95 (112)
297 3zsu_A TLL2057 protein, cyanoq 25.5 3E+02 0.01 24.1 8.4 19 504-522 19-37 (130)
298 1cii_A Colicin IA; bacteriocin 25.4 6.4E+02 0.022 26.9 13.8 35 124-158 155-189 (602)
299 2pjw_V Vacuolar protein sortin 25.3 1.7E+02 0.0058 24.1 6.4 52 542-593 32-83 (91)
300 1zvu_A Topoisomerase IV subuni 25.3 2.2E+02 0.0075 32.2 9.4 45 550-594 402-446 (716)
301 3kdq_A Uncharacterized conserv 25.2 3.7E+02 0.013 24.1 9.4 27 571-597 121-147 (154)
302 1ez3_A Syntaxin-1A; three heli 25.2 3E+02 0.01 23.1 11.2 28 569-596 93-120 (127)
303 3vjf_A WA20; protein design, d 24.9 1.9E+02 0.0065 22.8 6.2 42 551-592 8-49 (102)
304 2j5u_A MREC protein; bacterial 24.6 36 0.0012 33.5 2.6 17 543-559 26-42 (255)
305 1a92_A Delta antigen; leucine 24.6 82 0.0028 22.7 3.7 22 549-570 13-34 (50)
306 2xnx_M M protein, M1-BC1; cell 24.5 1.5E+02 0.0052 26.5 6.3 41 553-593 69-109 (146)
307 2dnx_A Syntaxin-12; snare, HAB 24.4 3.4E+02 0.012 23.4 10.4 96 497-605 11-118 (130)
308 3ilw_A DNA gyrase subunit A; D 24.4 2.8E+02 0.0095 29.7 9.6 17 509-525 378-394 (470)
309 4ad8_A DNA repair protein RECN 24.4 1.3E+02 0.0043 32.4 7.3 28 572-599 208-241 (517)
310 1uii_A Geminin; human, DNA rep 24.2 1.4E+02 0.0048 24.1 5.5 15 545-559 48-62 (83)
311 3iv1_A Tumor susceptibility ge 24.2 1.2E+02 0.004 24.4 5.0 7 572-578 61-67 (78)
312 3m9b_A Proteasome-associated A 23.9 87 0.003 30.7 5.1 15 569-583 80-94 (251)
313 3a6m_A Protein GRPE, HSP-70 co 23.8 11 0.00037 35.3 -1.3 36 545-580 21-56 (177)
314 3ok8_A Brain-specific angiogen 23.7 3.3E+02 0.011 26.1 9.1 20 510-529 41-60 (222)
315 2aze_A Transcription factor DP 23.6 2.2E+02 0.0074 25.8 7.3 47 550-600 5-51 (155)
316 2wuj_A Septum site-determining 23.6 64 0.0022 24.1 3.2 20 583-602 32-51 (57)
317 1s94_A S-syntaxin; three helix 23.6 2.2E+02 0.0075 25.9 7.8 26 570-595 125-150 (180)
318 1ik9_A DNA repair protein XRCC 23.3 76 0.0026 30.4 4.6 30 573-602 134-163 (213)
319 2zxx_A Geminin; coiled-coil, c 23.1 1.4E+02 0.0049 23.9 5.3 16 549-564 33-48 (79)
320 3cve_A Homer protein homolog 1 23.1 2.6E+02 0.0089 22.0 6.7 54 543-599 14-67 (72)
321 3ljm_A Coil Ser L9C; de novo d 23.0 1E+02 0.0035 19.4 3.5 10 554-563 5-14 (31)
322 2dgc_A Protein (GCN4); basic d 22.9 1.3E+02 0.0045 22.8 5.0 32 571-602 30-61 (63)
323 1s1c_X RHO-associated, coiled- 22.9 97 0.0033 24.3 4.2 31 547-577 3-33 (71)
324 3efg_A Protein SLYX homolog; x 22.8 1.4E+02 0.0048 23.8 5.3 40 545-584 16-55 (78)
325 3lhp_S 4E10_D0_1ISEA_004_N (T9 22.8 3.2E+02 0.011 23.7 7.9 30 544-573 90-120 (123)
326 2xnx_M M protein, M1-BC1; cell 22.7 1.1E+02 0.0037 27.4 5.0 8 590-597 99-106 (146)
327 3haj_A Human pacsin2 F-BAR; pa 22.6 7E+02 0.024 26.3 13.9 11 458-468 17-27 (486)
328 3ryc_E Stathmin-4; alpha-tubul 22.6 3.1E+02 0.011 24.4 8.0 13 480-492 41-53 (143)
329 1eh1_A Ribosome recycling fact 22.5 2.2E+02 0.0075 26.5 7.5 28 545-572 154-182 (185)
330 2xcs_B DNA gyrase subunit B, D 22.4 4E+02 0.014 29.9 10.7 16 510-525 600-615 (692)
331 3kbt_A Beta-I spectrin, spectr 22.0 5.5E+02 0.019 24.9 11.2 12 572-583 271-282 (326)
332 4h8s_A DCC-interacting protein 21.7 6.5E+02 0.022 25.7 12.5 27 572-598 148-174 (407)
333 2e7s_A RAB guanine nucleotide 21.6 4.2E+02 0.014 23.3 9.2 13 554-566 71-83 (135)
334 2pih_A Protein YMCA; regulate 21.6 4.2E+02 0.015 23.4 9.6 19 491-509 9-27 (151)
335 1jnm_A Proto-oncogene C-JUN; B 21.6 1.4E+02 0.0048 22.4 4.9 21 578-598 29-49 (62)
336 1m1j_C Fibrinogen gamma chain; 21.4 7.1E+02 0.024 26.0 13.2 111 471-590 17-131 (409)
337 1afo_A Glycophorin A; integral 21.2 67 0.0023 22.2 2.6 17 104-120 22-38 (40)
338 1t3j_A Mitofusin 1; coiled coi 20.9 3.3E+02 0.011 22.6 7.3 13 575-587 82-94 (96)
339 3lof_A Heat shock 70 kDa prote 20.9 3.6E+02 0.012 22.3 11.0 46 550-595 37-83 (113)
340 1ytz_I Troponin I; muscle, THI 20.8 89 0.003 29.1 4.3 41 482-527 7-48 (182)
341 1joc_A EEA1, early endosomal a 20.8 3.3E+02 0.011 23.4 7.9 16 551-566 19-34 (125)
342 4e61_A Protein BIM1; EB1-like 20.8 1.8E+02 0.0062 24.6 5.8 16 549-564 17-32 (106)
343 2bzb_A Conserved domain protei 20.7 91 0.0031 23.8 3.6 15 573-587 10-24 (62)
344 3m3w_A Pacsin3, protein kinase 20.6 2.3E+02 0.0078 28.4 7.9 38 552-589 185-222 (320)
345 3i2w_A Syndapin, LD46328P; EFC 20.6 1.4E+02 0.0047 29.3 6.1 45 549-593 169-213 (290)
346 2ve7_C Kinetochore protein NUF 20.5 43 0.0015 32.9 2.3 14 486-499 121-134 (250)
No 1
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=99.95 E-value=1.1e-28 Score=279.65 Aligned_cols=145 Identities=32% Similarity=0.600 Sum_probs=95.2
Q ss_pred cccCccceeeecCcccccccCCceEEEecccCCCccccCC-ceEEEeecCCCCCCCceEEEecCCCccccccceecCCce
Q psy114 157 KWFGSHVWAYLTPNLLVTRSYSTRVARSFSAQNGISDLKP-RTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGV 235 (609)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~n~s~~~~-~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a~~~~~~v 235 (609)
++.+.++|.+ + ..+|++|+ +.|+|+||++. ++|.|.|++||.|+++|+|.||++.. ++|.+.+++|
T Consensus 514 ~~~~~~~~~~--~-------~~qC~~i~-~~P~~~s~~~~~~~v~l~v~~lP~l~~~~~C~fg~~~~---~~a~~~~~~v 580 (681)
T 3oky_A 514 RAWEANRFAA--S-------ISQCMSLE-VHPNSISVSDHSRLLSLVVNDAPNLSEGIACAFGNLTE---VEGQVSGSQV 580 (681)
T ss_dssp TTTSTTSEEC--S-------GGGCCEEE-EESSEEETTSCSCEEEEEEETCCCCTTCEEEEETTTEE---EECEEETTEE
T ss_pred CCcccccccc--c-------CCccceee-ecCccccccccccEEEEeccCCCCCCCCCEEEcCCccc---ccceecCCee
Confidence 4455677854 2 45899995 89999999764 57999999999999889999998632 6788888999
Q ss_pred eecCCCCCCCCCCCCCCCeeEEEEEEEec-CCCcceeeeeeccccccCccccccccCCCCCccCCCCCccccCCCCCCCC
Q psy114 236 KCATPPTKDIPSIPVGQHNITAKLSVRSS-NGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRN 314 (609)
Q Consensus 236 ~C~sP~~~~lP~ip~g~d~v~v~L~L~~~-~~~~~as~~f~fydCs~~~~C~sCvsS~~pC~WC~~~~~CT~~~~~~C~~ 314 (609)
.|.+|+++.+|++|+|+||++|+|+|+++ +|+.|++++|+||||+++.+|.+||+|+|||+||+++|+|||+ .+.|..
T Consensus 581 ~C~sP~~~~~p~~p~g~d~~~v~l~l~~~~~~~~~~s~~f~FYdCs~~~~C~sCvss~w~C~WC~~~h~Cth~-~~~c~~ 659 (681)
T 3oky_A 581 ICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHD-PTTCSF 659 (681)
T ss_dssp EEECCCTTTSCCCC--CCEEEEEEEEEETTTCCEEEEEEEEEECCC----------------------------------
T ss_pred EeCCCCHHhCCCCCCCceEEEEEEEEEeccCCCceeEEeeEEEcCccCccccccccCCcCCCccCCCceeccC-CCCCcc
Confidence 99999999999999999999999999996 6999999999999999999999999999999999999999997 467874
Q ss_pred C
Q psy114 315 D 315 (609)
Q Consensus 315 ~ 315 (609)
+
T Consensus 660 ~ 660 (681)
T 3oky_A 660 Q 660 (681)
T ss_dssp -
T ss_pred c
Confidence 3
No 2
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=99.80 E-value=3.6e-20 Score=210.09 Aligned_cols=178 Identities=19% Similarity=0.447 Sum_probs=107.4
Q ss_pred eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCCCceeecccccCCCCCCCCCCCCeeeccCCCCcceee
Q psy114 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILV 350 (609)
Q Consensus 272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~~~~~~~~~~~~~~~~~~~~CP~i~~~~~~p~~~~i 350 (609)
.++++..|+.|.+|.+|+.++|| ||||...++|+. .++|.+..- .+. | ..+..+||.|... | ..+
T Consensus 473 ~qvPl~~C~~y~sC~~Cl~ArDPyCGWc~~~~~Cs~--~~~C~~~~~---~~~---~-~~~~~qC~~i~~~---P--~~~ 538 (681)
T 3oky_A 473 TRVPVESCEQYTTCGECLSSGDPHCGWCALHNMCSR--RDKCQRAWE---ANR---F-AASISQCMSLEVH---P--NSI 538 (681)
T ss_dssp EEEESCCGGGCCSHHHHTTSCCTTCEEETTTTEEEC--GGGSTTTTS---TTS---E-ECSGGGCCEEEEE---S--SEE
T ss_pred EEEEhhhCcCCCChhHHhcCCCCCCceeCCCCeEcC--hhhccCCcc---ccc---c-cccCCccceeeec---C--ccc
Confidence 57889999999999999999999 999999999998 467975320 010 1 1234689999743 3 235
Q ss_pred cCCc-ceeEEEEEEecccccccceeEEEEeecCceEEeeeeEeCCeEEecCCccc----cCCCcceEEEEEEEEEC-CCC
Q psy114 351 PSGV-KKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFT----YNSSVSNINASLAVIWG-GSK 424 (609)
Q Consensus 351 p~g~-~~~i~l~~~nLp~~~~~~~y~C~f~~~g~~~~~~a~v~~~~v~C~~~~~~----~~~~~~~~~v~l~v~~~-~~~ 424 (609)
++.. .+.+.+.+.|||.+.. +|.|.|+. ....+|.+.++.|.|..|... ++.+++++.|+++++.+ ++.
T Consensus 539 s~~~~~~~v~l~v~~lP~l~~--~~~C~fg~---~~~~~a~~~~~~v~C~sP~~~~~p~~p~g~d~~~v~l~l~~~~~~~ 613 (681)
T 3oky_A 539 SVSDHSRLLSLVVNDAPNLSE--GIACAFGN---LTEVEGQVSGSQVICISPGPKDVPVIPLDQDWFGLELQLRSKETGK 613 (681)
T ss_dssp ETTSCSCEEEEEEETCCCCTT--CEEEEETT---TEEEECEEETTEEEEECCCTTTSCCCC--CCEEEEEEEEEETTTCC
T ss_pred cccccccEEEEeccCCCCCCC--CCEEEcCC---cccccceecCCeeEeCCCCHHhCCCCCCCceEEEEEEEEEeccCCC
Confidence 5543 3478899999998753 59999973 345578888899999877543 34446889999999886 344
Q ss_pred CCCCCCCceeeeeeccccCcccCccccCCCCcccccCCCCCccccc-cCCC
Q psy114 425 PLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIF-EQCD 474 (609)
Q Consensus 425 ~ids~~~l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~-~~C~ 474 (609)
.|.+ ..++||||++ +..|.+| +.+.|+|.||.++|.|+++ +.|+
T Consensus 614 ~~~s---~~f~FYdCs~-~~~C~sC--vss~w~C~WC~~~h~Cth~~~~c~ 658 (681)
T 3oky_A 614 IFVS---TEFKFYNCSA-HQLCLSC--VNSAFRCHWCKYRNLCTHDPTTCS 658 (681)
T ss_dssp EEEE---EEEEEECCC-----------------------------------
T ss_pred ceeE---EeeEEEcCcc-Ccccccc--ccCCcCCCccCCCceeccCCCCCc
Confidence 4544 3589999997 4579999 7889999999999999998 5575
No 3
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=97.47 E-value=3.6e-05 Score=85.04 Aligned_cols=41 Identities=29% Similarity=0.779 Sum_probs=37.0
Q ss_pred eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN 314 (609)
Q Consensus 272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~ 314 (609)
.++++..|+.|.+|.+|+.++|| |+||..+++|+. .++|+.
T Consensus 459 ~~vpl~~C~~y~sC~~Cl~ArDPyCgW~~~~~~Cs~--~~~C~~ 500 (528)
T 3ol2_B 459 LKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRCSR--RSECSR 500 (528)
T ss_dssp EEEESCCGGGCCSHHHHHHSCCTTCEEETTTTEEEC--GGGCC-
T ss_pred EEEEhhhCcCcCcHhHHhhCCCCCCcccCCCCeecC--HhHcCC
Confidence 57889999999999999999999 999999999998 467986
No 4
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=97.46 E-value=2.2e-05 Score=84.52 Aligned_cols=42 Identities=31% Similarity=0.909 Sum_probs=37.9
Q ss_pred eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCCC
Q psy114 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRND 315 (609)
Q Consensus 272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~ 315 (609)
.++++..|..|.+|..|+.++|| |+||...++|+. .++|...
T Consensus 414 ~qVPl~~C~~y~sC~~Cl~ArDPYCGW~~~~~~Csr--~~eC~rs 456 (476)
T 3nvn_B 414 RRIRVANCNKHKSCSECLTATDPHCGWCHSLQRCTF--QGDCVHS 456 (476)
T ss_dssp EEEESCCCTTCCSHHHHHTTCCTTEEEETTTTEEEE--GGGSCCC
T ss_pred EEEEhhhCcCCCchhHHhhCCCCCCcccCCCCccCC--HhhccCc
Confidence 57889999999999999999999 999999999998 4679753
No 5
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=97.39 E-value=2.6e-05 Score=86.65 Aligned_cols=41 Identities=32% Similarity=0.951 Sum_probs=37.6
Q ss_pred eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN 314 (609)
Q Consensus 272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~ 314 (609)
.++++..|+.|.+|.+|+.++|| ||||..+++|+. .++|++
T Consensus 474 ~kvpl~~C~~y~sC~~Cl~arDPyCgWc~~~~~C~~--~~~C~~ 515 (539)
T 3al9_A 474 TRVPVESCEQYTTCGECLSSGDPHCGWCALHNMCSR--RDKCQR 515 (539)
T ss_dssp EEEESCCGGGCCSHHHHTTSCCTTCEEEGGGTEEEC--GGGSTT
T ss_pred ceeehhhCcCcCCHHHHhcCCCCCCceecCCCceec--hhhcCC
Confidence 57899999999999999999999 999999999998 467975
No 6
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=97.32 E-value=7.1e-05 Score=85.16 Aligned_cols=41 Identities=20% Similarity=0.506 Sum_probs=37.0
Q ss_pred eeeeccccccCccccccccCCCC-CccCCCCCccccCCCCCCCC
Q psy114 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN 314 (609)
Q Consensus 272 ~~f~fydCs~~~~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~~ 314 (609)
.++++..|+.|.+|.+|+.++|| |+||...++|+.. ..|..
T Consensus 475 ~~vpl~~C~~y~sC~~Cl~arDPyCgW~~~~~~C~~~--~~c~~ 516 (663)
T 1olz_A 475 VQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVAL--HQTES 516 (663)
T ss_dssp EEEESCCGGGCCSHHHHHHTTCTTEEEETTTTEEEET--TTCCT
T ss_pred EEEEchhCCCCCCHHHHhcCCCCCccccCCCCceeCc--ccCCC
Confidence 57899999999999999999999 9999999999983 56864
No 7
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.00014 Score=80.77 Aligned_cols=38 Identities=24% Similarity=0.854 Sum_probs=32.4
Q ss_pred eeec--cccccCccccccccCCCC--CccCCCCCccccCCCCCCCC
Q psy114 273 KFMF--FDCNTYSSCTQCVSSDFP--CDWCVDGHRCTHDTAENCRN 314 (609)
Q Consensus 273 ~f~f--ydCs~~~~C~sCvsS~~p--C~WC~~~~~CT~~~~~~C~~ 314 (609)
++++ .+|+.|.+|.+|+.++|| |||| .++||+ .++|++
T Consensus 478 ~vpv~~~~C~~y~sC~~Cl~a~DPy~CgWc--~~~Ct~--~~~C~~ 519 (527)
T 4fww_A 478 QVPIQGPGCRHFLTCGRCLRAWHFMGCGWC--GNMCGQ--QKECPG 519 (527)
T ss_dssp EEETTCSCGGGCCSHHHHHHSCGGGCCEEC--SSSEEC--GGGSTT
T ss_pred EEeccccCCCCCCCHHHHhcCCCCCcCcCC--CCEeeC--hhhCcC
Confidence 4555 489999999999999998 9999 689998 478974
No 8
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=96.73 E-value=0.00058 Score=75.73 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=38.1
Q ss_pred eeeeccccccCcccc-ccccCCCC-CccCCCCCccccCCCCCCCCCceee
Q psy114 272 TKFMFFDCNTYSSCT-QCVSSDFP-CDWCVDGHRCTHDTAENCRNDILIT 319 (609)
Q Consensus 272 ~~f~fydCs~~~~C~-sCvsS~~p-C~WC~~~~~CT~~~~~~C~~~~~~~ 319 (609)
.++++..|+.|.+|. +|+.++|| |+||...++|+.. ..|....|..
T Consensus 493 ~qVPl~~C~~y~sC~~~Cl~ArDPYCGW~~~~~~C~~~--~~~~~~~~~Q 540 (565)
T 3oky_B 493 IKVPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAHL--SPLSRLTFEQ 540 (565)
T ss_dssp EEEESCCCGGGTTCHHHHHHTCCTTEEEETTTTEEEEC--CTTCCSCEEC
T ss_pred EEeehhhCcCcccchhhhhhcCCCCCcccCCCCceeec--cCCCCCceee
Confidence 578999999999999 89999999 9999999999973 4465444433
No 9
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=96.29 E-value=0.00093 Score=75.77 Aligned_cols=34 Identities=24% Similarity=0.802 Sum_probs=30.2
Q ss_pred eeeeccccccC-ccccccccCCCC-CccCCCCCccccC
Q psy114 272 TKFMFFDCNTY-SSCTQCVSSDFP-CDWCVDGHRCTHD 307 (609)
Q Consensus 272 ~~f~fydCs~~-~~C~sCvsS~~p-C~WC~~~~~CT~~ 307 (609)
.++|+.+|+.| .+|.+|+.++|| ||||. ++|++-
T Consensus 493 ~kVPl~~C~~y~~sC~~Cl~ArDPYCGW~~--~~Csr~ 528 (667)
T 4gz8_A 493 AQLPLHRCDIYGKACAECCLARDPYCAWDG--SSCSRY 528 (667)
T ss_dssp EEEESCCGGGSCSSHHHHHHTCCTTEECCS--SSCEEC
T ss_pred EEEEhhhccCccccHHHHhcCCCCCCCCcc--CcCeeE
Confidence 47899999998 689999999999 99994 889863
No 10
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=96.26 E-value=0.0023 Score=73.49 Aligned_cols=81 Identities=23% Similarity=0.553 Sum_probs=53.9
Q ss_pred CCcceeeeeeccccccCccccccccC-CCC-CccCCCCCccccCCCCCCCCCceeecccccCCCCCCCCCCC-CeeeccC
Q psy114 266 GPDFVTTKFMFFDCNTYSSCTQCVSS-DFP-CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFC-PTIRGTD 342 (609)
Q Consensus 266 ~~~~as~~f~fydCs~~~~C~sCvsS-~~p-C~WC~~~~~CT~~~~~~C~~~~~~~~~~~~~~~~~~~~~~C-P~i~~~~ 342 (609)
+..++...+.+|+|..+.+|..|+.+ ++| |+||. +.|+. .+.|..+.|. ...| |.|....
T Consensus 486 ~~~v~~vpl~~~~C~~~~~C~~Cl~a~~~p~C~W~~--~~C~~--~~~C~~~~W~-------------~~~~~P~ItsI~ 548 (727)
T 2uzx_B 486 GKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCH--DKCVR--SEECLSGTWT-------------QQICLPAIYKVF 548 (727)
T ss_dssp TTEEEEEETTCSCSTTCCSHHHHHHSCGGGCEEECS--SCEEE--STTCSSSCCB-------------SSCCCCEEEEEE
T ss_pred CCeEEEecCCccCCCcCCchhhHhcCCCCccccccc--cCccc--cccCCccccc-------------cceeCCEEeccC
Confidence 34455555566899999999999999 477 99996 89997 3678644331 1234 4554432
Q ss_pred CCCcceeecCCcceeEEEEEEeccc
Q psy114 343 IGSQEILVPSGVKKAVKVKVHIVGQ 367 (609)
Q Consensus 343 ~~p~~~~ip~g~~~~i~l~~~nLp~ 367 (609)
| ..-|..--+.|++.+.|+..
T Consensus 549 --P--~~Gp~~GGT~vTI~G~nf~~ 569 (727)
T 2uzx_B 549 --P--NSAPLEGGTRLTICGWDFGF 569 (727)
T ss_dssp --S--SBCCSSCCCEEEEEEECCCE
T ss_pred --C--CcccCCCCEEEEEEEecCCC
Confidence 2 11233334689999999974
No 11
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=95.94 E-value=0.00075 Score=77.60 Aligned_cols=52 Identities=29% Similarity=0.638 Sum_probs=40.5
Q ss_pred eeeeccccCcccCccccCCCCcccccCCCCCccccccCCCC----CCCCCChhhHHHhhh
Q psy114 435 NIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDK----GLEGDSDEIKRLKEK 490 (609)
Q Consensus 435 ~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~~----~~~~~~~~I~~i~~~ 490 (609)
.+|+|+. +.+|+.|+++++.+.|+||. .+|++.++|.. +..| .|.|+.+.+.
T Consensus 495 ~~~~C~~-~~~C~~Cl~a~~~p~C~W~~--~~C~~~~~C~~~~W~~~~~-~P~ItsI~P~ 550 (727)
T 2uzx_B 495 NGLGCRH-FQSCSQCLSAPPFVQCGWCH--DKCVRSEECLSGTWTQQIC-LPAIYKVFPN 550 (727)
T ss_dssp TCSCSTT-CCSHHHHHHSCGGGCEEECS--SCEEESTTCSSSCCBSSCC-CCEEEEEESS
T ss_pred CccCCCc-CCchhhHhcCCCCccccccc--cCccccccCCcccccccee-CCEEeccCCC
Confidence 3489997 88999999998899999997 57999999962 2234 5777766543
No 12
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=95.85 E-value=0.0024 Score=71.16 Aligned_cols=39 Identities=26% Similarity=0.623 Sum_probs=33.1
Q ss_pred eeeeeccccccCc-cccccccCCCC-CccCCCCCccccCCCCCCC
Q psy114 271 TTKFMFFDCNTYS-SCTQCVSSDFP-CDWCVDGHRCTHDTAENCR 313 (609)
Q Consensus 271 s~~f~fydCs~~~-~C~sCvsS~~p-C~WC~~~~~CT~~~~~~C~ 313 (609)
-.++++..|+.|. +|.+|+.++|| |+|| .++|+.. ..|.
T Consensus 441 V~qVPl~~C~~y~~sC~~Cl~ArDPYCGWc--~~~C~~~--~~~~ 481 (590)
T 3nvq_A 441 VSQVPLDLCEVYGGGCHGCLMSRDPYCGWD--QGRCISI--YSSE 481 (590)
T ss_dssp EEEEETTCCTTCCSHHHHHHHTCCTTEEEE--TTEEEET--TSSS
T ss_pred EEEcchhhccccccchhHHhcCCCCCCCCc--cccceec--CCCC
Confidence 3578999999997 89999999999 9999 4999974 3464
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.71 E-value=0.086 Score=69.06 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=50.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+++++++++++++++.++|+++++++..+.++.+.|..+|+....|.++|+.+++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999988765
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.51 E-value=0.49 Score=47.10 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=16.8
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
+...+..|-.+++.+....++++.+.+.+....+++
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~ 65 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKN 65 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.40 E-value=0.3 Score=44.11 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=42.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+..+++++++|+...+.+|..++-..+.++++.+.|.+|++.|.++..+|+..+.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666776666666666677888888888888888888888888887665
No 16
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.85 E-value=0.57 Score=39.87 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 556 KEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+.+++....+..+.+.++.+|++...++..++|+..+....++..+
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555544444433
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.26 E-value=0.54 Score=52.16 Aligned_cols=35 Identities=3% Similarity=-0.005 Sum_probs=16.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+-|+..+.+|++.+.+.+|-+.+..|..+|++.++
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444455555555555555555554443
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.11 E-value=0.81 Score=45.51 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=27.7
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~ 530 (609)
.|..+.+++..|-.+++.+.+..+.+..+...+....+.+-.+...++
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666666666666666666555555544443
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.07 E-value=0.13 Score=61.44 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+.+++.++++.+.+.+|++.+.+++++++
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 20
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=92.74 E-value=0.022 Score=62.93 Aligned_cols=35 Identities=37% Similarity=0.930 Sum_probs=28.5
Q ss_pred eeccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114 437 YKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD 474 (609)
Q Consensus 437 YnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~ 474 (609)
.+|+. ..+|+.|+.|...|.|+||. ++|+.++.|+
T Consensus 484 ~~C~~-y~sC~~Cl~a~DPy~CgWc~--~~Ct~~~~C~ 518 (527)
T 4fww_A 484 PGCRH-FLTCGRCLRAWHFMGCGWCG--NMCGQQKECP 518 (527)
T ss_dssp SCGGG-CCSHHHHHHSCGGGCCEECS--SSEECGGGST
T ss_pred cCCCC-CCCHHHHhcCCCCCcCcCCC--CEeeChhhCc
Confidence 57985 67999999776668999994 5799988885
No 21
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=92.66 E-value=1.5 Score=37.73 Aligned_cols=73 Identities=11% Similarity=0.252 Sum_probs=44.8
Q ss_pred HHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy114 496 EELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAA 575 (609)
Q Consensus 496 ~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~ 575 (609)
.||.......-.-+.||.+-|.+...+++.=++.+.. -.+++++|+.|++.+..+|.++..+++-
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq---------------~q~~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---------------GQKKVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556677888888777766433221111 0445777777777777777777777777
Q ss_pred HHHHHHHH
Q psy114 576 LKNQADSV 583 (609)
Q Consensus 576 lkkQ~~~l 583 (609)
|+++.+-|
T Consensus 97 lr~~~~~~ 104 (121)
T 3mq7_A 97 LRRENQVL 104 (121)
T ss_dssp HHHHHHHH
T ss_pred HHhhchhh
Confidence 77665544
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.51 E-value=0.19 Score=60.05 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhh
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQAD----SVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~----~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+++.|++|+++.++++.++.+|.+++++..+ .|...-..|.+|+++|++|++
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333322 222333344455555554443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.49 E-value=0.26 Score=54.73 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=18.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
++++.+++++.|+++.+...+...++.+|.+++..++
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555555555555554433
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.43 E-value=0.47 Score=38.69 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQG 605 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~ 605 (609)
....+.++.+++...+...+++.++.+|++....+..++|+..+.....+..|....
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888999999999999999999999999999998887543
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.21 E-value=0.35 Score=43.63 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
++.+.++|+.++++.++++.....|+..++.+.+.+.+|+..|.+|++.|+.++
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666666666666666666554
No 26
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.09 E-value=1.7 Score=41.92 Aligned_cols=6 Identities=0% Similarity=0.202 Sum_probs=2.1
Q ss_pred HHHHHh
Q psy114 496 EELKKE 501 (609)
Q Consensus 496 ~qla~~ 501 (609)
.+++.+
T Consensus 20 ~~~~~l 25 (284)
T 1c1g_A 20 DRADEA 25 (284)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 27
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=91.95 E-value=2.5 Score=36.32 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~ 569 (609)
.+..|+|..|...++..+.+.-++.+.+..+.+-.+-+.++.... ...+.-...++.|+.+|+.+..++...
T Consensus 2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~--------~k~~eq~~~le~lk~eL~~~~~el~~l 73 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQ--------RKTQEQLEVLESLKQELATSQRELQVL 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988888887777777777776655555442211 111222455677777777765544443
Q ss_pred -------hhhHHHHHHHHHHHHHHHHHHHH
Q psy114 570 -------KTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 570 -------~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
+.+-..+.++..++.+|.|.|..
T Consensus 74 q~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 74 QGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455555666666666543
No 28
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=91.86 E-value=1.8 Score=45.97 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=64.8
Q ss_pred HHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114 498 LKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577 (609)
Q Consensus 498 la~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lk 577 (609)
+.+.....|-+.+|+++.+.+++.|+..-... ..+ +.+.....++...+..+++.+|+.+.+..+...+..+..|+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~---~~~-~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~ 111 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTI---YPS-EKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLT 111 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCS-STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc-ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33444445666778888888888777444332 111 11111111222255677777788777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 578 NQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 578 kQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+.+.+....+.|.....+|....
T Consensus 112 ~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 112 DMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 999999888888887777777644
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.53 E-value=3.5 Score=34.95 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.2
Q ss_pred HHHhhhhh
Q psy114 485 KRLKEKLS 492 (609)
Q Consensus 485 ~~i~~~l~ 492 (609)
..|.+++.
T Consensus 5 daIKkKm~ 12 (101)
T 3u1c_A 5 DAIKKKMQ 12 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.51 E-value=2.1 Score=46.31 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+.+++.++..++.+++..+.++|.+.++++.+.+.+|-+|+.++.+++..++++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 444455555555555666677888888888888888888888888888777653
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.85 E-value=2.2 Score=36.20 Aligned_cols=39 Identities=8% Similarity=0.189 Sum_probs=15.4
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~ 522 (609)
+..|.+++..|-.+......-.+.+..+...++..+.+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~ 42 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQL 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444333333333333333333333333333333
No 32
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.51 E-value=0.88 Score=38.37 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=40.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.++..+..++++|+++-+..+.++...+.+...|..|-+.+-+||..+.-+.-.++..
T Consensus 18 ~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 18 LEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888888777777777777777777777777777777665555444443
No 33
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.05 E-value=3.7 Score=39.42 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 573 SAALKNQADSVGKEYD 588 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eyd 588 (609)
+..+..+.+.+..+++
T Consensus 239 ~~~~~~~~~~~~~~~~ 254 (284)
T 1c1g_A 239 AEFAERSVTKLEKSID 254 (284)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.04 E-value=0.42 Score=35.79 Aligned_cols=32 Identities=13% Similarity=0.350 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.|+++||..-+.|..+|+.|.++|++|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888888888888889899998888775
No 35
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=89.37 E-value=0.073 Score=58.97 Aligned_cols=41 Identities=29% Similarity=0.873 Sum_probs=33.7
Q ss_pred ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD 474 (609)
Q Consensus 432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~ 474 (609)
.+|.+-.|+. ..+|+.|+.+.-. -|+||...++|+.+..|.
T Consensus 474 ~kvpl~~C~~-y~sC~~Cl~arDP-yCgWc~~~~~C~~~~~C~ 514 (539)
T 3al9_A 474 TRVPVESCEQ-YTTCGECLSSGDP-HCGWCALHNMCSRRDKCQ 514 (539)
T ss_dssp EEEESCCGGG-CCSHHHHTTSCCT-TCEEEGGGTEEECGGGST
T ss_pred ceeehhhCcC-cCCHHHHhcCCCC-CCceecCCCceechhhcC
Confidence 4688889985 6799999966433 599999888999998896
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.34 E-value=3.3 Score=35.11 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhHHHHHHHHH
Q psy114 505 SAALKSQADSVGKEYDRLLK 524 (609)
Q Consensus 505 ~ea~~kQa~sa~~~ak~~~~ 524 (609)
++++||..+.....+...++
T Consensus 4 MdaIKkKm~~lk~e~e~a~d 23 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALD 23 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555444444444444333
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.33 E-value=1.2 Score=36.14 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=35.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..+.-|+++||.+-.. ...+.+.++...+.|..|..+|.+|++.-+.++.
T Consensus 22 I~lLqmEieELKekN~~-------L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNS-------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444 4457888888888899999999999988887765
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.88 E-value=5.1 Score=34.94 Aligned_cols=97 Identities=8% Similarity=0.179 Sum_probs=43.3
Q ss_pred hhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhh
Q psy114 491 LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEK 570 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~ 570 (609)
|..|=+|+..+...++.+.-|.+++..++..|-..-+.- ...-.....++..||+.+.+..=.--..|
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E------------~~~r~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE------------MLQREEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 333344444444555555555555555555443222110 00001123345556655544332222234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+++|+....=|.+-|+ +|...||.|++
T Consensus 90 ~~iesL~eEl~FLKk~he---eEl~eLq~qi~ 118 (119)
T 3ol1_A 90 RKVESLQEEIAFLKKLHE---EEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 445555555555544443 45666776654
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.03 E-value=2.8 Score=55.28 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~ 527 (609)
--.+.+.|++..++.+.+-+.++++|++.|++-.
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555556666665555443
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.02 E-value=2.6 Score=38.26 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=37.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
...+..++..|+.+++++.+.+..-..|+.+|+-|...+...-.+|-+||.+|=
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777777777776666666666666653
No 41
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=86.82 E-value=0.46 Score=40.02 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=42.7
Q ss_pred CceEEEecccCCCccccCCceEEEeecCCCCCCCceEEEecCCCcccccccee-cCCceeecCCC
Q psy114 178 STRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIK-QTNGVKCATPP 241 (609)
Q Consensus 178 ~~~~~~~~~~P~n~s~~~~~~v~l~v~~lP~L~~~~~C~F~~~~~~~~~~a~~-~~~~v~C~sP~ 241 (609)
+.-+.|.++.|..=.....+.|.|+=.+|. .+..++|.||+.. .++.+ +.+.+.|.+|+
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~-~gs~~~~~fG~~~----vpa~~~s~~vl~C~tPp 63 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQE-ASNNYSCLFDQIS----VPASLIQPGVLRCYCPA 63 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCC-CSSCEEEEETTEE----EECEEEETTEEEEECCC
T ss_pred CCcEEEEEECCCcccCCCCEEEEEEeECCC-CCccEEEEECCEE----EeEEEeECCEEEEEecC
Confidence 345778899997766676678887765554 3457999999753 56665 56678999886
No 42
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=86.46 E-value=0.18 Score=54.34 Aligned_cols=51 Identities=24% Similarity=0.696 Sum_probs=36.9
Q ss_pred ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCCCCCCCCChhhH
Q psy114 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIK 485 (609)
Q Consensus 432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~~~~~~~~~~I~ 485 (609)
.+|.+-.|.. ..+|..|+.+...| |+||...++|+....|....+ +..|+.
T Consensus 414 ~qVPl~~C~~-y~sC~~Cl~ArDPY-CGW~~~~~~Csr~~eC~rs~~-~~~Wl~ 464 (476)
T 3nvn_B 414 RRIRVANCNK-HKSCSECLTATDPH-CGWCHSLQRCTFQGDCVHSEN-LENWLD 464 (476)
T ss_dssp EEEESCCCTT-CCSHHHHHTTCCTT-EEEETTTTEEEEGGGSCCCSS-CCCEEC
T ss_pred EEEEhhhCcC-CCchhHHhhCCCCC-CcccCCCCccCCHhhccCccc-cccccc
Confidence 4577889975 67899998654334 999998889999999963211 334653
No 43
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=86.28 E-value=0.16 Score=55.88 Aligned_cols=53 Identities=30% Similarity=0.779 Sum_probs=37.5
Q ss_pred ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCCCCCCCCChhhHHH
Q psy114 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRL 487 (609)
Q Consensus 432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~~~~~~~~~~I~~i 487 (609)
.+|.+-.|+. ..+|+.|+.|...| |+||...++|+....|.... -+..|+-++
T Consensus 459 ~~vpl~~C~~-y~sC~~Cl~ArDPy-CgW~~~~~~Cs~~~~C~~~~-~~~~wl~s~ 511 (528)
T 3ol2_B 459 LKVPVASCAQ-HLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQ-GPEQWLWSF 511 (528)
T ss_dssp EEEESCCGGG-CCSHHHHHHSCCTT-CEEETTTTEEECGGGCC-----CCCEEETT
T ss_pred EEEEhhhCcC-cCcHhHHhhCCCCC-CcccCCCCeecCHhHcCCCC-ccchhhccc
Confidence 4678889985 56899998664445 99999888999999997221 134465443
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.61 E-value=3.6 Score=44.10 Aligned_cols=69 Identities=12% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy114 494 TEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 494 li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~ 573 (609)
|.++|...+++-..+.+||.++|.+--.+|+.-++-+. .-.+.+++|+.|+++...+|+.+++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA---------------QGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666655555533221100 011356666666666655555555555
Q ss_pred HHHH
Q psy114 574 AALK 577 (609)
Q Consensus 574 ~~lk 577 (609)
+.+|
T Consensus 467 ~~~~ 470 (471)
T 3mq9_A 467 ERLR 470 (471)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 45
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=84.31 E-value=3.9 Score=31.96 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..-++.|+++|+.++.+....+..+.-=-|-+|.|+.|.=.|--|++=||.+++
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 3446778888888888877776554443345688888888888888888888876
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.17 E-value=15 Score=33.95 Aligned_cols=122 Identities=15% Similarity=0.237 Sum_probs=69.4
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC--CCc------------------
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG--DKK------------------ 540 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~--~~~------------------ 540 (609)
...|+.+.+.|..+-..|+.+..+.+-++||..-...++..+-..+..|+.....-. .+.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777666555554443333322222110000 000
Q ss_pred ---chhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhh
Q psy114 541 ---DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL----KEHEKVQKVVT 602 (609)
Q Consensus 541 ---~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~----~e~~~l~~~~~ 602 (609)
..+.+..+.+.+.-|..|++.....+.+++.|.-.|....-.|-||+.-+- =|...+|+.++
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 012234556667777777777777777777777777777777777777775 34666666554
No 47
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=83.19 E-value=0.26 Score=55.89 Aligned_cols=41 Identities=22% Similarity=0.667 Sum_probs=33.3
Q ss_pred ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCCC
Q psy114 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCD 474 (609)
Q Consensus 432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C~ 474 (609)
.+|.+-.|+. ..+|+.|+.+.-.| |+||...++|+....|.
T Consensus 475 ~~vpl~~C~~-y~sC~~Cl~arDPy-CgW~~~~~~C~~~~~c~ 515 (663)
T 1olz_A 475 VQAPLAFCGK-HGTCEDCVLARDPY-CAWSPPTATCVALHQTE 515 (663)
T ss_dssp EEEESCCGGG-CCSHHHHHHTTCTT-EEEETTTTEEEETTTCC
T ss_pred EEEEchhCCC-CCCHHHHhcCCCCC-ccccCCCCceeCcccCC
Confidence 5688889984 67899998664445 99999888999888784
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.38 E-value=3.4 Score=35.33 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=5.9
Q ss_pred hhHHHhhhhh
Q psy114 483 EIKRLKEKLS 492 (609)
Q Consensus 483 ~I~~i~~~l~ 492 (609)
.|..+..+|.
T Consensus 25 ei~~L~~~L~ 34 (110)
T 2v4h_A 25 QLEDLRQQLQ 34 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666665
No 49
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=82.38 E-value=7.7 Score=40.64 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=56.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-----CCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114 504 NSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG-----DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578 (609)
Q Consensus 504 ~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~-----~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkk 578 (609)
+.=.+|+||-.|=.+|.+..+++..+.+...+.+ ..+...|...+..-.+.||..|++..+...+.+.++.+-+.
T Consensus 154 ~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~ 233 (373)
T 3hhm_B 154 QEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAA 233 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445889999999999999999888776432211 11222345555666666777666655544444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy114 579 QADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 579 Q~~~l~~eydrl~~e~~~l~~ 599 (609)
.--.+.++.+.|.-|.-+|.+
T Consensus 234 ~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 234 EYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccChHHHHHHH
Confidence 333455555555555555554
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.30 E-value=9.2 Score=32.33 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=23.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
..|+..++++++.+....++++...+|++.+|.+...|..+++-|
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555556665555555555444
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.17 E-value=21 Score=31.41 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~ 569 (609)
.+..+-.++..+....+...+.-........+++.+...|...+... .+......+..+.|.+.-.++...++..
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E-----~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE-----QDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444555666665655544211 0100111112233333333334455566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+..++....+...|..+...|-++.+.|..++++
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888887763
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.73 E-value=20 Score=33.75 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 505 SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584 (609)
Q Consensus 505 ~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~ 584 (609)
.+-++.+.+-+..+..-|.+.+..|...++.. ....+..+..|...+..|+.|+...+.++..+.++.. +|...|.
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~e-L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq 94 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQ-LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---KQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 34445555566666666666666655443210 0001122344455555555555555554444433311 1244444
Q ss_pred HHHHHHHHHHHHHHhh
Q psy114 585 KEYDRLLKEHEKVQKV 600 (609)
Q Consensus 585 ~eydrl~~e~~~l~~~ 600 (609)
+|...|.+++..|+..
T Consensus 95 ~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554443
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.44 E-value=6.7 Score=42.29 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=20.4
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE 518 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ 518 (609)
.|.+--+-+.+.|++|+....+.....+.+++..+.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~ 89 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTN 89 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 344555556666666666666665555555554443
No 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.37 E-value=21 Score=32.56 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
.++..|-.+|+.+..+.-.+.-+.+-+++--.+|-++-..|...+
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL 86 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554455554444444433
No 55
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.21 E-value=4.6 Score=33.92 Aligned_cols=54 Identities=9% Similarity=0.182 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+..+++.++.+++.++.+-.+--.+..+++.|--.+..|-|.+-..+...+.++
T Consensus 37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333222233444444444444444444444444444433
No 56
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.29 E-value=4.4 Score=32.66 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=41.9
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.|++.|+-.|++|+.|=-.-+++|+..+.++..|+.|.++=..|..||-++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 556777777788877777777788888899999999999998888888655
No 57
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.07 E-value=15 Score=31.86 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=15.4
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 503 TNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 503 ~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
+..+.+++|.+.++..-.++.-+-+.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677776666555555444443
No 58
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.35 E-value=5.5 Score=36.12 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEY 587 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~ey 587 (609)
++..+......|.+|+
T Consensus 111 q~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 59
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.32 E-value=3.2 Score=34.49 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=9.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 508 LKSQADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 508 ~~kQa~sa~~~ak~~~~e~~~l~~ 531 (609)
++.|-.+|.++...--.+-+.++.
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke 30 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444343333344444
No 60
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=78.02 E-value=23 Score=32.99 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
-.-|.|-+.|.++|-.++.+++++|...
T Consensus 80 r~~k~~~~~L~~~f~~~~~~fq~~Q~~~ 107 (196)
T 1fio_A 80 TNKQAQAENSRQRFLKLIQDYRIVDSNY 107 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888888888888777643
No 61
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.91 E-value=6.6 Score=31.10 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.+|+..|+++++++...+.-++.+.++......|...|..|..++|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777787777777766666766666666665555555555555443
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.76 E-value=13 Score=29.99 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=10.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
.+...+.-|+.++....+.|..+..
T Consensus 45 ~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.46 E-value=31 Score=30.19 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.++..+|...+...+||..|++=.-.|...+
T Consensus 89 ~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 89 EALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677778899998887766665443
No 64
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=76.27 E-value=11 Score=32.87 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=44.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV-QKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l-~~~~~ 602 (609)
+.+.-.+.+|+-+....+-+++-..+-...=|.....|.-.|+.|..||.+. ...+.
T Consensus 51 qq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~ 108 (130)
T 3cl3_D 51 QQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV 108 (130)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888888877777766667777888999999999999999983 33443
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.11 E-value=9.4 Score=30.92 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q psy114 590 LLKEHEKVQK 599 (609)
Q Consensus 590 l~~e~~~l~~ 599 (609)
|-.|+++|+.
T Consensus 53 L~~en~qLk~ 62 (81)
T 2jee_A 53 LERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 66
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=75.77 E-value=46 Score=30.59 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
-.-+.|...|.+.|-.++.+|+.+|....
T Consensus 122 Rir~~q~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999997644
No 67
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=75.03 E-value=0.49 Score=52.45 Aligned_cols=42 Identities=26% Similarity=0.748 Sum_probs=31.7
Q ss_pred CceeeeeeccccCcccC-ccccCCCCcccccCCCCCccccccCCC
Q psy114 431 NVHVNIYKCRDLANNCG-LCLALPEKYGCGWCESSKRCEIFEQCD 474 (609)
Q Consensus 431 ~l~v~LYnCs~~~~dCs-~Cl~a~~~y~C~WC~~~~~C~~~~~C~ 474 (609)
..+|.+-.|+. ..+|. .|+.+.-.| |+||..+.+|+....|.
T Consensus 492 V~qVPl~~C~~-y~sC~~~Cl~ArDPY-CGW~~~~~~C~~~~~~~ 534 (565)
T 3oky_B 492 VIKVPLGRCER-HGKCKKTCIASRDPY-CGWVRESGSCAHLSPLS 534 (565)
T ss_dssp EEEEESCCCGG-GTTCHHHHHHTCCTT-EEEETTTTEEEECCTTC
T ss_pred EEEeehhhCcC-cccchhhhhhcCCCC-CcccCCCCceeeccCCC
Confidence 35688899975 67899 898553335 99999888999776663
No 68
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=74.70 E-value=15 Score=31.31 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+.+++.|.+|.+.+.++++.+.+++.++..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346777777777777777777766666553
No 69
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.16 E-value=34 Score=30.04 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.++..+|...+...+||..|++=.-.|...+
T Consensus 91 ~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 91 EQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677778889988887666665443
No 70
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=73.86 E-value=36 Score=31.46 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh----cC-CCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy114 505 SAALKSQADSVGKEYDRLLKEHEKVQKVVTE----QG-DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQ 579 (609)
Q Consensus 505 ~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~----~~-~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ 579 (609)
.=.+|+||-.|=.+|-+..+|+-.+.....+ .. ..+...|+..+..-.+.|+..|+...+.-.+.+.++.+.+.-
T Consensus 46 Eiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~ 125 (170)
T 3l4q_C 46 ELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASD 125 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457779988878888888887655443211 10 112234566777777788887766655444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy114 580 ADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~~ 599 (609)
--.+.++.+.|.-|..+|+.
T Consensus 126 ~relERemnsLKPeL~qL~K 145 (170)
T 3l4q_C 126 NREIDKRMNSLKPDLMQLRK 145 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 44455666666666555554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.79 E-value=10 Score=40.80 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=15.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
+.+.+++.+.++.+.-...|-.+....+.|..|
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 333444445555555555555554444444443
No 72
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=72.91 E-value=6.3 Score=25.18 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALK 577 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lk 577 (609)
|+..||.|+...+++....+-|+.+||
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555442222223444443
No 73
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=72.84 E-value=9.7 Score=36.00 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=43.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEY-DRLLKEHEKVQKVVT 602 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~ey-drl~~e~~~l~~~~~ 602 (609)
.+..++++|+.+|.-..++|+. -+.+++.+|.+..-...|| .++.+..++|+.++.
T Consensus 103 ~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 103 RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 3456677788888877777766 5778999999999999998 566667777887765
No 74
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=72.67 E-value=25 Score=37.78 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=14.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 566 LKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 566 l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
|++-++|+++-+++ ..||+.-+..++.-
T Consensus 68 l~kY~~dlakY~~~----~AeY~~kl~aYe~~ 95 (497)
T 3iox_A 68 LAKYQADLAKYQKD----LADYPVKLKAYEDE 95 (497)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44445566666555 45555544444443
No 75
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=72.45 E-value=17 Score=40.38 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy114 581 DSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 581 ~~l~~eydrl~~e~~~l~~~~ 601 (609)
+|+..+-+.|..|.+.|+.+.
T Consensus 563 ~g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 563 EGFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp HTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777777777763
No 76
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=72.38 E-value=7.9 Score=32.71 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=48.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+.=+|+-||-.|++.++.+....++...-.+..+.+.+..+.|..+...|+.++.
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778999999999999988888888888888888888888888888888887776
No 77
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=71.86 E-value=16 Score=38.94 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=18.7
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~ 573 (609)
+.+.+.+++++|++++++.++++.+.+.++
T Consensus 69 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 69 DTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp CTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777666554444444
No 78
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.48 E-value=5.6 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=8.7
Q ss_pred cccCHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~ 564 (609)
+.+|..|+..|..+|+.++.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ 41 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKAT 41 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 79
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=71.10 E-value=43 Score=28.70 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.-.-+.|..+|.+.+-.++.+|+..|..
T Consensus 90 ~Rir~~q~~~L~~kf~e~m~~y~~~q~~ 117 (127)
T 1ez3_A 90 LRIRKTQHSTLSRKFVEVMSEYNATQSD 117 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999887754
No 80
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=70.23 E-value=23 Score=32.59 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEY-DRLLKEHEKVQKVVT 602 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~ey-drl~~e~~~l~~~~~ 602 (609)
+..++++++.++...-++++. -...++.+|.+.+-...|| .++..+.++|+.+|.
T Consensus 104 L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 344455666666665555555 3567778888888888888 566667777888776
No 81
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=69.82 E-value=16 Score=29.85 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKT-----NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~-----~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++..++++|+.+.++.++++..++. +.+..-+.-=.+..||+.+.+=-+.|=+.++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455666666666666555544433 2222222233344566666555555544444
No 82
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.57 E-value=15 Score=39.42 Aligned_cols=13 Identities=0% Similarity=0.245 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSK 561 (609)
Q Consensus 549 ~~e~~~lk~~l~~ 561 (609)
.+++++|++++++
T Consensus 75 ~~~~~~~~~~~~~ 87 (455)
T 2dq0_A 75 LAKSREIVKRIGE 87 (455)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 83
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=69.53 E-value=56 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=14.7
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHH
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAAL 508 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~ 508 (609)
.++..++..|..|+-.+.+..++-
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qr 28 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777776666554443
No 84
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.51 E-value=20 Score=29.45 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
+.+++.++++..+.+.+.+.....|..+...|..|++.|
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 85
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=68.98 E-value=21 Score=29.77 Aligned_cols=36 Identities=6% Similarity=0.160 Sum_probs=18.5
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEY 519 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~a 519 (609)
+-....++..|-.++..+......+..|.+.+..+.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~ 38 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444433
No 86
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.59 E-value=18 Score=31.06 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=32.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+++.+.|+..|+.+......|..||..+++.++..++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 36666779999999999999999999999999887765
No 87
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=68.51 E-value=1.2 Score=50.40 Aligned_cols=35 Identities=20% Similarity=0.634 Sum_probs=26.0
Q ss_pred CceeeeeeccccCcccCccccC-CCCcccccCCCCCcccc
Q psy114 431 NVHVNIYKCRDLANNCGLCLAL-PEKYGCGWCESSKRCEI 469 (609)
Q Consensus 431 ~l~v~LYnCs~~~~dCs~Cl~a-~~~y~C~WC~~~~~C~~ 469 (609)
-++|.+-+|+.-..+|+.|+.+ || | |+||. .+|+.
T Consensus 492 V~kVPl~~C~~y~~sC~~Cl~ArDP-Y-CGW~~--~~Csr 527 (667)
T 4gz8_A 492 VAQLPLHRCDIYGKACAECCLARDP-Y-CAWDG--SSCSR 527 (667)
T ss_dssp EEEEESCCGGGSCSSHHHHHHTCCT-T-EECCS--SSCEE
T ss_pred EEEEEhhhccCccccHHHHhcCCCC-C-CCCcc--CcCee
Confidence 3568889998533689999866 55 6 99996 46773
No 88
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.02 E-value=27 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+.++..|++|.+.+..|-.||.-|..+|+..+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777666544
No 89
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.63 E-value=22 Score=28.14 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+...|+..+..++..+..+..+-+.+|...+.+..-.|.=..|...|+..+.
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334445555555555555555567777777788887778888888888887665
No 90
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.88 E-value=52 Score=34.10 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhc
Q psy114 591 LKEHEKVQKVVTE 603 (609)
Q Consensus 591 ~~e~~~l~~~~~~ 603 (609)
.+.|++.|+||+.
T Consensus 178 ~e~ye~qqKQL~q 190 (390)
T 1deq_A 178 LEDYKNQQKQLEQ 190 (390)
T ss_pred HHHHHHHHHHHHh
Confidence 4778888888763
No 91
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=65.51 E-value=1.1e+02 Score=30.08 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
..+++|++.++.+...++.++++|....-..+...
T Consensus 164 ~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 164 KADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777665443444444
No 92
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=65.25 E-value=49 Score=35.55 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
..+++|++.++++...++.+++++....-..++....+|.+.+.+
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~ 228 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 228 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888988888888888888888776555566666777655443
No 93
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=65.23 E-value=93 Score=31.30 Aligned_cols=43 Identities=14% Similarity=0.300 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
..+++|++..+.+...++.+++++....-..++....+|...+
T Consensus 182 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~ 224 (337)
T 2x3v_A 182 PEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGM 224 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4678888888888888888888887765555666677776644
No 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.06 E-value=20 Score=39.07 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=11.4
Q ss_pred hhHHHhhhhhHHHHHHHHhh
Q psy114 483 EIKRLKEKLSKTEEELKKEK 502 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~ 502 (609)
.|..+......+...++...
T Consensus 42 D~~~ir~n~~~v~~~l~~R~ 61 (501)
T 1wle_A 42 DMESLCAYPEDAARALDLRK 61 (501)
T ss_dssp CHHHHHHSHHHHHHHHHHHT
T ss_pred CHHHHHhCHHHHHHHHHHcC
Confidence 46666666665555555443
No 95
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.04 E-value=81 Score=28.62 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=15.3
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGK 517 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~ 517 (609)
+..+|+.-|+-...+..+..+.+++-++...
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ 34 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKA 34 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444333
No 96
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.98 E-value=78 Score=33.37 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=56.3
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 504 NSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 504 ~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
..+-...|+++.+..|+.|+..-.. ...+.. +.....+....+..+|+.+|....+.-+...+..+..|+.+.+.+
T Consensus 42 ~L~~~l~~isn~Ts~~~~~v~~ik~---~~~~~q-~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 42 SLEDILHQVENKTSEVKQLIKAIQL---TYNPDE-SSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHCTTT-CCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH---hhcccc-CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344445666777777777744422 221111 111122233344444455555555555566677888899999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy114 584 GKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 584 ~~eydrl~~e~~~l~~~~~ 602 (609)
......|.+..+.|.....
T Consensus 118 ~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 118 NQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888888888876544
No 97
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=63.47 E-value=60 Score=26.52 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=32.6
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l 529 (609)
+..+|..|-..|.....+.|.+.||-+.....-..+-.+++.-
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R 44 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAER 44 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888899999999888888777776666543
No 98
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=62.89 E-value=62 Score=29.43 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
...+|+.|..+|++.+....-|++.+.-|.+..+.|-.+.+
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444444444444444433333
No 99
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.52 E-value=31 Score=27.78 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+...|+..+..+...|..+..+-+.+|...+.+..-.|.=+.|...|+..+.
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555555555566666777777777777777777788888877654
No 100
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=62.41 E-value=60 Score=28.17 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEE 564 (609)
Q Consensus 553 ~~lk~~l~~~~~ 564 (609)
.+|++++.+...
T Consensus 47 ~~l~~~i~er~~ 58 (119)
T 3etw_A 47 EQVYNELSQRAQ 58 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 101
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.32 E-value=96 Score=28.50 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=3.3
Q ss_pred CHHHHHHHH
Q psy114 548 DSDEIKRLK 556 (609)
Q Consensus 548 ~~~e~~~lk 556 (609)
|..|++.++
T Consensus 102 L~~El~~~k 110 (168)
T 3o0z_A 102 LQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 102
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=61.96 E-value=28 Score=27.64 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+..-|.++..+|...+...+||..|++=.-.|...
T Consensus 13 ~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~E 48 (74)
T 2xv5_A 13 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566667777777788888887766665544
No 103
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=61.86 E-value=10 Score=36.51 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=29.2
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~ 582 (609)
++.+.+..++++|++++++..+.+.++.+|++.+||.++.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888788888888888876543
No 104
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=61.74 E-value=21 Score=29.16 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQ-----ADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ-----~~~l~~eydrl~~e~~~l~~ 599 (609)
.++|+.++++++.+..+.++++..++.| ++...++|=+++.||+++..
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD 55 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRD 55 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHH
Confidence 4678888888888878888888877763 56677899999999999874
No 105
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.67 E-value=19 Score=38.94 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~ 564 (609)
+.+++++|+++++++++
T Consensus 76 l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544444
No 106
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.50 E-value=67 Score=33.29 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=18.7
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHH
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLK 524 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~ 524 (609)
|....+.+.+=|.+|+...+.....-+++.+....-..+|.
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443
No 107
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=61.02 E-value=1.6 Score=48.68 Aligned_cols=39 Identities=28% Similarity=0.669 Sum_probs=28.2
Q ss_pred ceeeeeeccccCcccCccccCCCCcccccCCCCCccccccCC
Q psy114 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQC 473 (609)
Q Consensus 432 l~v~LYnCs~~~~dCs~Cl~a~~~y~C~WC~~~~~C~~~~~C 473 (609)
.+|.+-.|+.-..+|+.|+.|...| |+||. ++|+....|
T Consensus 442 ~qVPl~~C~~y~~sC~~Cl~ArDPY-CGWc~--~~C~~~~~~ 480 (590)
T 3nvq_A 442 SQVPLDLCEVYGGGCHGCLMSRDPY-CGWDQ--GRCISIYSS 480 (590)
T ss_dssp EEEETTCCTTCCSHHHHHHHTCCTT-EEEET--TEEEETTSS
T ss_pred EEcchhhccccccchhHHhcCCCCC-CCCcc--ccceecCCC
Confidence 4578889986445899998653334 99995 689965555
No 108
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=60.76 E-value=18 Score=38.43 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 549 SDEIKRLKEKLSKTEEELK-KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~-~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
..+++.|+.+-.+..|++. ++..|.++|+.++..+..+...|.++..+++.++
T Consensus 41 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 41 KKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333 1223444555555555555555544444444443
No 109
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.65 E-value=31 Score=29.43 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQA--------------DSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~--------------~~l~~eydrl~~e~~~l~~~~ 601 (609)
..++++||.++++.+++++ .+.-||-|+ |.++-|-++|.++...||.+.
T Consensus 44 q~~idelk~ei~q~~~~lE----~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVME----TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666666666554332 233344444 445555566666666666554
No 110
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.60 E-value=13 Score=27.41 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
..++..|.+.=+++.+.|+++..+++.||.|.+.|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444555555666677777666655
No 111
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.59 E-value=27 Score=29.43 Aligned_cols=61 Identities=8% Similarity=0.134 Sum_probs=36.6
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy114 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA----ALKNQA-DSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 542 ~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~----~lkkQ~-~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+++++++..|+...+.+|.....+|+.|+..++ .+-|++ +.=..+.+.|-++..+|+.+++
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777765444 344443 2233445556566666666655
No 112
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.52 E-value=13 Score=39.21 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=31.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+..+.+|+++|+++.+++++++++++.+++.++.+...-..+=.+|-.+.++|+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344566677777777777666666666666666654444444444444444443
No 113
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=60.39 E-value=34 Score=25.80 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 561 KTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 561 ~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
+.+++|..+|+.+.-|-|=-.+|+.|..++-.+.++||..
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3445666777788877777778888888888888888753
No 114
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=59.99 E-value=75 Score=32.29 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
..+++|++.++++...++.+++++....-..++....+|...+.+
T Consensus 191 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~ 235 (350)
T 3aco_A 191 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 235 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889998898888888888888776666677777777654433
No 115
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=58.94 E-value=23 Score=27.41 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 551 EIKRLKEKLSKTEEELKK--EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~--~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..+|+.|+.+...++.. ++.+.. .=.-|.+.+|.|.+|++++..+++
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFA----KWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYA----KWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444443333 444442 123466777888888887777765
No 116
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=57.79 E-value=26 Score=30.15 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKK 568 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~ 568 (609)
|+..++.|+.|+...+.++..
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 117
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=57.33 E-value=31 Score=32.25 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=9.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 506 AALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 506 ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
.++++|.+++-..-.++..||..|.+.+
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554443
No 118
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.26 E-value=15 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKE 586 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e 586 (609)
+++|+.++...++.......+.+.|+.|.+.|..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333334555555555555444
No 119
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=57.11 E-value=89 Score=27.05 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=18.9
Q ss_pred HHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 486 ~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
.+..++..|-.++..+++..++.-+|=+...++|.+-|.+.
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~ 46 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444333333333333333
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.04 E-value=31 Score=37.46 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.++|+.++..|..+...|-++..+++.++.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777666666666553
No 121
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.20 E-value=59 Score=24.13 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKN 578 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkk 578 (609)
++++.++....+.+++...++.-+|.
T Consensus 29 ~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 29 LKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 122
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.03 E-value=40 Score=28.10 Aligned_cols=52 Identities=25% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
..|-=+|++.+....++-......-...-.+...|..|.+||..|++.|..+
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433322222222233457788888888888888888643
No 123
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.75 E-value=30 Score=28.26 Aligned_cols=60 Identities=8% Similarity=0.170 Sum_probs=38.2
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEK------TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~------~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+.+..+|++|+.++++.+.++.... ..+..+-++.+.+..+.+.+.++-..|....+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~~ 87 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKN 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 3445566677777777777777665432 23456666777777777777777777765433
No 124
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=55.64 E-value=82 Score=25.57 Aligned_cols=13 Identities=8% Similarity=0.312 Sum_probs=5.6
Q ss_pred hhhhHHHHHHHHH
Q psy114 569 EKTNSAALKNQAD 581 (609)
Q Consensus 569 ~~~~~~~lkkQ~~ 581 (609)
+|+|+..|||-.+
T Consensus 47 ~E~d~~~LrkdvD 59 (86)
T 3swk_A 47 AENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHHhhHH
Confidence 3444444444433
No 125
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=55.60 E-value=1.6e+02 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
.++..+.+++....||-.-+...+..
T Consensus 173 k~~~~~~~~~~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 173 QAHLRSHMAEESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555565555555554
No 126
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.59 E-value=87 Score=27.17 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy114 580 ADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~ 598 (609)
|......|..|.+.|.+|.
T Consensus 101 Aqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 101 AQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444455666655555553
No 127
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.58 E-value=24 Score=31.08 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy114 580 ADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l 597 (609)
...+..+-.|.+.||+.|
T Consensus 93 L~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 93 LAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444433
No 128
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.48 E-value=25 Score=24.25 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEE 564 (609)
Q Consensus 551 e~~~lk~~l~~~~~ 564 (609)
|+..|+.||...++
T Consensus 21 elaaleselqalek 34 (48)
T 1g6u_A 21 ELAALESELQALEK 34 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 129
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.25 E-value=21 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.|+.|..-|+.||++-...|.|.|.|...||.=...|
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4566777788888888888888888888777654444
No 130
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=54.70 E-value=83 Score=29.52 Aligned_cols=23 Identities=0% Similarity=0.169 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy114 580 ADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+..-||+.++++.=|+..+.
T Consensus 132 leD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 132 LEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777666666655544
No 131
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=54.60 E-value=12 Score=35.09 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+.+|+.+.+.|++|+|||..|.++.+.|++
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677788888999999999999988875
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.16 E-value=21 Score=37.73 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+++.|+.|++.++++.++.+.+++.++.+.+.+...|.....+..+|.++++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766666677777776666666666555555555655554
No 133
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.47 E-value=35 Score=26.86 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
.++++|........+++..++.++..|+.+..+|..|.+.|
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666667777777777777777777666554
No 134
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.45 E-value=1.1e+02 Score=26.54 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
...++..+........+-++.+.++..|++|.+.+
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555666666655544
No 135
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=53.43 E-value=1.7e+02 Score=28.54 Aligned_cols=34 Identities=3% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.+++|.+.++.+...++.+++++....-..+...
T Consensus 172 ~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 172 ADVEKARQQAQIRHQMAEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555566655554333334444
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.53 E-value=41 Score=26.54 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy114 579 QADSVGKEYDR 589 (609)
Q Consensus 579 Q~~~l~~eydr 589 (609)
....|..|+|.
T Consensus 55 eI~~LqseLDK 65 (72)
T 3nmd_A 55 LIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 137
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=52.31 E-value=33 Score=28.71 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=38.4
Q ss_pred ccCHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIK-RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~-~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..|+..++ +|..+...+.++.. ++..| .|-|.|..||-.++.+++.+|.+..
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~----~l~~l-~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIE----SNILI-HQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH----HSTHH-HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hhccc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666 66666666655444 55555 4899999999999999999998765
No 138
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=52.19 E-value=41 Score=28.87 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy114 578 NQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 578 kQ~~~l~~eydrl~~e~~ 595 (609)
+..+.+.+.||+++.|..
T Consensus 68 ~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 68 RKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666677777776655
No 139
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.10 E-value=38 Score=25.77 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+++.|+++-+.|..|.+.|.+|.+.|..
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 140
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.54 E-value=25 Score=37.71 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKK---EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~---~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..++++|+.+-.+..+++.+ +..|.++|+.++..+..+...|-++..+++.++.
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444332 2234566666666666666666666666555543
No 141
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=51.53 E-value=64 Score=32.14 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~ 591 (609)
.+++|++.++.+...++.+++++....-..++....+|...+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~ 233 (312)
T 3abh_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENM 233 (312)
T ss_dssp HHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 566666666666666666666665544444555555565443
No 142
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=51.50 E-value=30 Score=35.33 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
.+|.+|+.+.+..+...+.++..|+.+.+.+....++|..+..+|+...
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455666666666666666666666666665543
No 143
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.15 E-value=62 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
+-+.|+.|.+.|.+|.+.|-.-..
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556555555544333
No 144
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.12 E-value=21 Score=37.85 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.|.+|+++|+++.++.+++.+..+.+++.++.|......+-.+|-.+.+++++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777777777777766666677777776655555555555444444443
No 145
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=50.74 E-value=18 Score=25.00 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=7.0
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy114 546 KGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~ 562 (609)
..+..|++.|+++|...
T Consensus 23 aaleselqalekklaal 39 (48)
T 1g6u_A 23 AALESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 146
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=50.45 E-value=69 Score=31.49 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=16.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
|++...+..+..++....+|-..+.+.+..
T Consensus 176 K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 176 KARQQAQIRHQMAEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444556666776666665555
No 147
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=50.11 E-value=59 Score=26.02 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=36.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA----ALKNQA-DSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~----~lkkQ~-~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++++.|..|+...+.+|.....+|+.|+..++ .+-|++ +.=..+.+.|-++..+|+.+++
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777765443 344433 2233445556666666666665
No 148
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=49.97 E-value=1.2e+02 Score=26.21 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.+|+.++.++..++.. ..+.---|.|=.+|.++|+.++.+
T Consensus 47 ~~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~ 86 (119)
T 2avr_X 47 EQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKK 86 (119)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332222 223334555555555555555444
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.71 E-value=45 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy114 578 NQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 578 kQ~~~l~~eydrl~~e~~~l~ 598 (609)
++-..|..|...|-+|...|.
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444443
No 150
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=49.44 E-value=1e+02 Score=30.33 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
+.-.-|.|.++|.+.|-.++.++++.|..
T Consensus 112 e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~ 140 (267)
T 1dn1_B 112 DLRIRKTQHSTLSRKFVEVMSEYNATQSD 140 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888888888888888887754
No 151
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.27 E-value=1e+02 Score=25.37 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+...++.+.+.|...|++|.+....-+.+|+
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 79 EEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999998777666555544
No 152
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.06 E-value=44 Score=29.07 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=27.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr 589 (609)
..+..|+.|++.|+.+++...- .+..-+..|+.|.-.|..|.+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777766532 3444566666666666655543
No 153
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.94 E-value=54 Score=28.73 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.++-|+|.----+||.-+|-.|...+|
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344444443333444444433333333
No 154
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=48.57 E-value=32 Score=31.12 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q psy114 521 RLLKEHEKVQKVV 533 (609)
Q Consensus 521 ~~~~e~~~l~~~~ 533 (609)
++..+|+.|+...
T Consensus 26 ~l~~eN~~Lk~e~ 38 (155)
T 2oto_A 26 RLRHENKDLKARL 38 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555666655543
No 155
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=48.32 E-value=71 Score=34.48 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=4.3
Q ss_pred HHHHHhhhhHH
Q psy114 507 ALKSQADSVGK 517 (609)
Q Consensus 507 a~~kQa~sa~~ 517 (609)
+++.+++.+..
T Consensus 48 ~~~~~~~~l~~ 58 (484)
T 3lss_A 48 RTQFLTEASKK 58 (484)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 156
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.21 E-value=19 Score=31.62 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTE 563 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~ 563 (609)
+.|+.+|+..+..+.
T Consensus 35 k~Ei~elrr~iq~L~ 49 (129)
T 3tnu_B 35 KHEISEMNRMIQRLR 49 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 157
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.12 E-value=38 Score=25.04 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
|..+|..|..++..+..++.....|+.+.|..+++-
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444443333444444444444433
No 158
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.75 E-value=1.2e+02 Score=25.26 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
.+++.+.++++..+++...+.++..++.+.+.|..+|+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444455555555555555554
No 159
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=47.67 E-value=1.6e+02 Score=28.38 Aligned_cols=20 Identities=0% Similarity=0.041 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q psy114 569 EKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eyd 588 (609)
++++.......++....+|.
T Consensus 175 a~~~Y~~~v~~~n~~~~~~~ 194 (276)
T 2v0o_A 175 ATDTYKLYVEKYALAKADFE 194 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344433334444444554
No 160
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=47.35 E-value=9.6 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
..++++||...+|..+-|.+.++...++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888888888776
No 161
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.21 E-value=34 Score=36.95 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEEL---KKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l---~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..++++|+.+..+..+++ +++..|+++|+.++..|..+...|-++..+++.++.
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332 233345556666666666666666666555555543
No 162
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=47.04 E-value=50 Score=26.97 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=32.2
Q ss_pred hhcccCHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTE-------EELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~-------~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+++..+..++++|+..+++.. ....+...+...|..|.......+++|......|..++.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444332 233334445556666655556666777776666666554
No 163
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=46.79 E-value=48 Score=33.71 Aligned_cols=13 Identities=0% Similarity=0.125 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHH
Q psy114 571 TNSAALKNQADSV 583 (609)
Q Consensus 571 ~~~~~lkkQ~~~l 583 (609)
+++++++.|.+.+
T Consensus 129 a~~~~~~~~l~~~ 141 (369)
T 4dk0_A 129 AEMDVVQENIKQA 141 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 164
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.77 E-value=52 Score=25.09 Aligned_cols=19 Identities=47% Similarity=0.606 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl 590 (609)
+-..|+.+.+.|..|+..|
T Consensus 38 ~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
No 165
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.61 E-value=60 Score=25.96 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+...+.+|+.+++=.++ -++.|-...-...++-|+|..+...|..++.
T Consensus 12 le~Ri~~LE~klAfqE~-------tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 12 LEARLVELETRLSFQEQ-------ALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666655544 4455555555555555555555555554443
No 166
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=46.49 E-value=1.7e+02 Score=26.64 Aligned_cols=60 Identities=5% Similarity=0.097 Sum_probs=37.2
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKE-----------KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~-----------~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...+.+..+.+.++.+++.....+... ..+...++.+.+.+...|+.|.+.-.+=+..|+
T Consensus 139 ~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~ 209 (213)
T 1cun_A 139 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666666554443321 224456788888888888888777666665554
No 167
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=46.44 E-value=92 Score=26.69 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=17.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
.|...++.-+..|.++.++...+.++ +..|...|+..=.++.+|...||
T Consensus 49 ~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ 97 (112)
T 1x79_B 49 ALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333332 23344444444444444433333
No 168
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=46.27 E-value=62 Score=29.98 Aligned_cols=90 Identities=14% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHH-hhhhHHH
Q psy114 498 LKKEKTNSAALKSQADS-VGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK-EKTNSAA 575 (609)
Q Consensus 498 la~~~~~~ea~~kQa~s-a~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~-~~~~~~~ 575 (609)
+..+.+....++.+..- +.+...++..+.+.|++.+ ..++++++..++-.-.++++ ...+++.
T Consensus 51 ~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~Lr~~l---------------~kdlee~r~~l~P~~~e~~~~~~~~~e~ 115 (185)
T 3r2p_A 51 WDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEM---------------SKDLEEVKAKVQPYLDDFQKKWQEEMEL 115 (185)
T ss_dssp CSCSSCHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---------------hccHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy114 576 LKNQADSVGKEY-DRLLKEHEKVQKVVT 602 (609)
Q Consensus 576 lkkQ~~~l~~ey-drl~~e~~~l~~~~~ 602 (609)
++.+.+=+..|| +++...-++|+.+|.
T Consensus 116 lr~~l~Py~~el~~~~~~~~e~Lr~~L~ 143 (185)
T 3r2p_A 116 YRQKVEPLRAELQEGARQKLHELQEKLS 143 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTSH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 169
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=46.22 E-value=53 Score=29.58 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=10.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHH
Q psy114 511 QADSVGKEYDRLLKEHEKVQK 531 (609)
Q Consensus 511 Qa~sa~~~ak~~~~e~~~l~~ 531 (609)
+.+......+.+...|+.|..
T Consensus 51 ~~~eL~~~~~~Le~~n~~L~~ 71 (155)
T 2oto_A 51 RAEELEKAKQALEDQRKDLET 71 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555543
No 170
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.19 E-value=1.6e+02 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
..+..|+.+.+.+.....+|..+...+
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665555555544443
No 171
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.65 E-value=30 Score=25.57 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTE 563 (609)
Q Consensus 550 ~e~~~lk~~l~~~~ 563 (609)
.++++|+.|.++++
T Consensus 19 ~d~eaLk~E~~eLk 32 (53)
T 2yy0_A 19 PEIELLRLELAEMK 32 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34445555444443
No 172
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=45.63 E-value=49 Score=29.29 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 488 KEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527 (609)
Q Consensus 488 ~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~ 527 (609)
...|.+|+.+.| .+.++++.+-..++-+++|+|.-
T Consensus 16 k~~Lk~lll~kA-----~e~l~kE~e~k~eeKkkiLaER~ 50 (133)
T 1j1d_C 16 KLQLKTLLLQIA-----KQELEREAEERRGEKGRALSTRA 50 (133)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566666655 45588888888888899998883
No 173
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.49 E-value=77 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+..-+.++..+|...+...+||..|++=.-.|...
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~E 71 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333444566677777778888888887766665544
No 174
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=45.26 E-value=1.6e+02 Score=26.36 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=11.0
Q ss_pred hhhHHHhhhhhHHHHH
Q psy114 482 DEIKRLKEKLSKTEEE 497 (609)
Q Consensus 482 ~~I~~i~~~l~~li~q 497 (609)
..++-+.++|.+||..
T Consensus 4 g~LTlLlG~l~~l~G~ 19 (158)
T 3tul_A 4 GQLTLLLGKLMTLLGD 19 (158)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhh
Confidence 3567777777777754
No 175
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=45.10 E-value=44 Score=32.04 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=36.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
....+.++..+|.+|+- ++.=...||+..+.|.+|+-.+.++..+++.+++
T Consensus 12 v~PTR~~L~~lK~rL~~-------a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~ 62 (217)
T 3aon_A 12 VNPTRMELTRLKKQLTT-------ATRGHKLLKDKQDELMRQFILLIRKNNELRQAIE 62 (217)
T ss_dssp --CCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666654 4457788888888888888888888888887765
No 176
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=45.09 E-value=35 Score=33.10 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
+++++..|..+|++...+.....+.++..+.|+..+..-|||++-|.
T Consensus 176 lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 176 VKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 34555566666666666666666777788888888888888887653
No 177
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=45.06 E-value=17 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~ 564 (609)
++.|+.+||.|....++
T Consensus 5 lkdevgelkgevralkd 21 (27)
T 3v86_A 5 LKDEVGELKGEVRALKD 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHH
Confidence 45566666666655554
No 178
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=44.98 E-value=1.6e+02 Score=25.79 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy114 495 EEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533 (609)
Q Consensus 495 i~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~ 533 (609)
-..|+........++|..---++.--++-.|++.+++.+
T Consensus 38 gkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 38 GNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 333444444555555555444555555555555544443
No 179
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=44.93 E-value=50 Score=23.56 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=12.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhhH
Q psy114 550 DEIKRLKEKL-SKTEEELKKEKTNS 573 (609)
Q Consensus 550 ~e~~~lk~~l-~~~~~~l~~~~~~~ 573 (609)
.+++++|.|+ ++..+|+.|.+.|+
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665553 44555555555554
No 180
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.63 E-value=34 Score=28.24 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=11.4
Q ss_pred hHHHHHHHHhhhhHHHHH
Q psy114 492 SKTEEELKKEKTNSAALK 509 (609)
Q Consensus 492 ~~li~qla~~~~~~ea~~ 509 (609)
+..|.|.+...++..+++
T Consensus 23 v~~lKq~RRtlKNRgyAq 40 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQ 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHH
Confidence 456666666666666655
No 181
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.99 E-value=74 Score=26.58 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q psy114 584 GKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 584 ~~eydrl~~e~~~l~~~~~~ 603 (609)
.++...+-..+.+|+.|+.+
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45666777788888888763
No 182
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.99 E-value=27 Score=35.61 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHH
Q psy114 515 VGKEYDRLLKEH 526 (609)
Q Consensus 515 a~~~ak~~~~e~ 526 (609)
+.++++.|++..
T Consensus 151 ~~~~Y~~fl~~~ 162 (315)
T 2ve7_A 151 TIKCYESFMSGA 162 (315)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC
Confidence 456677777654
No 183
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=43.54 E-value=44 Score=22.52 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEE 564 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~ 564 (609)
.|.+||-++++.+++
T Consensus 7 ~ENekLhk~ie~Kde 21 (37)
T 1t6f_A 7 KENEKLHKEIEQKDN 21 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456667677766655
No 184
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.16 E-value=59 Score=26.32 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 565 ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 565 ~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
+|..+=.+-+.|.++.+.|..|-.+|.+|+..|+.
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344444555555555555555555555443
No 185
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.82 E-value=1.3e+02 Score=27.88 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=3.4
Q ss_pred hhHHHHHHH
Q psy114 503 TNSAALKSQ 511 (609)
Q Consensus 503 ~~~ea~~kQ 511 (609)
+-.+++.++
T Consensus 78 ~I~~e~r~~ 86 (175)
T 3lay_A 78 KIYDDYYTQ 86 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
No 186
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=42.69 E-value=2.4e+02 Score=27.25 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=58.8
Q ss_pred ChhhHHHhhhhhHHHHHHHHhhhhHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHH
Q psy114 481 SDEIKRLKEKLSKTEEELKKEKTNSAALK-------SQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIK 553 (609)
Q Consensus 481 ~~~I~~i~~~l~~li~qla~~~~~~ea~~-------kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~ 553 (609)
++-|.+|.-++-.|+.+++.+...-..-- |...+..+.-...-...+++...+.+-+.+ +....++.
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k------~P~s~kl~ 134 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYK------DPQSTKIP 134 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CTTCTHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc------CCCCchHH
Confidence 56899999999999988887765544332 333333333222222222222222111000 01124577
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHH
Q psy114 554 RLKEKLSKTEEELKKEKTNSAALKNQA--DSVGKEYDRL 590 (609)
Q Consensus 554 ~lk~~l~~~~~~l~~~~~~~~~lkkQ~--~~l~~eydrl 590 (609)
.|+.||...+-+..-+|+.+..+|.|. |++...++-+
T Consensus 135 ~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al 173 (234)
T 3plt_A 135 VLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSL 173 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 788888777777777777777777664 5555566666
No 187
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.66 E-value=46 Score=27.75 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
++.|+++|.+|+...+. ...+.-.||..|--|..|-++-.+
T Consensus 52 L~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45566666666654433 334444556656655555555433
No 188
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.60 E-value=91 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=22.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.-+.++..+|...+...+||..|++=.-.|...
T Consensus 37 ~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 37 RLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334466667777788888888887766666544
No 189
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.38 E-value=33 Score=26.02 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+.|..+-+.|..+.+.|.+|...|.
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433
No 190
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=42.14 E-value=1.4e+02 Score=34.30 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=33.5
Q ss_pred CCCCCChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 476 GLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532 (609)
Q Consensus 476 ~~~~~~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~ 532 (609)
+.+|.+........+-+.|.-+. +..++.++.+-+|+-.+++|+.-+|.+....++
T Consensus 642 svEpvDqrtrd~LqkSVqlAiEI-tT~sqEa~Ar~~A~~~eQea~g~Lerqki~d~a 697 (861)
T 2zuo_A 642 SVEPVDQRTRDALQRSVQLAIEI-TTNSQEAAAKHEAQRLEQEARGRLERQKILDQS 697 (861)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHH
Confidence 44566665555555555333222 223455566778888888888888777555444
No 191
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=42.10 E-value=1.4e+02 Score=24.37 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+...++.+.+.|...|+.|.+....-+.+|+
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le 109 (119)
T 3uun_A 79 EETEVQEQMNLLNSRWECLRVASMEKQSNLH 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999988777665554444
No 192
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=41.95 E-value=57 Score=33.70 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy114 517 KEYDRLLKEHEKVQK 531 (609)
Q Consensus 517 ~~ak~~~~e~~~l~~ 531 (609)
+.|++++.|...|+.
T Consensus 29 ~~~~~~~ke~~~l~~ 43 (354)
T 3d5a_X 29 GRYQSLSRRYAEMGE 43 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544444
No 193
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=41.63 E-value=53 Score=31.61 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 558 KLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 558 ~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
+|...++.|+-++.=...||+..+.|.+|+-.+.++..+++.+++.
T Consensus 10 ~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~ 55 (223)
T 3a5c_G 10 NLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQ 55 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555566788899999999999999999999999988763
No 194
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.32 E-value=75 Score=25.59 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy114 573 SAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~ 591 (609)
+..+|-..+-=-.-|.+|+
T Consensus 59 LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 59 LLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3344444333334454443
No 195
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=41.03 E-value=2.7e+02 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~ey 587 (609)
+...+++|+..|.-..+++++ ...+++.+|.+..-...||
T Consensus 86 l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eel 126 (273)
T 3s84_A 86 LRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEF 126 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHH
Confidence 344455555555444444443 3555666666655555444
No 196
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.57 E-value=90 Score=25.04 Aligned_cols=33 Identities=6% Similarity=0.194 Sum_probs=16.9
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAAL 576 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~l 576 (609)
.+..|.+.|..|+..|+....+-...+.++..+
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666665554444444444333
No 197
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=40.53 E-value=29 Score=26.59 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+..+||+++++|-+..++ .-=.+- ..=..++|-|+|+.+++++..
T Consensus 5 ~L~~~IE~kR~eL~~l~~k--~Gl~~~-----~vI~~SQeLD~LIn~Y~k~~~ 50 (62)
T 2bzb_A 5 QLKNKIENKKKELIQLVAR--HGLDHD-----KVLLFSRDLDKLINKFMNVKD 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHCCHH-----HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666665544321 100112 233456788999998887654
No 198
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.43 E-value=49 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.442 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy114 576 LKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 576 lkkQ~~~l~~eydrl~~e~ 594 (609)
+|++.+.|..+...+.++.
T Consensus 116 l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 116 LSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 199
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=40.36 E-value=31 Score=26.63 Aligned_cols=46 Identities=26% Similarity=0.198 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.+..+||++++++-+..++ .-=.+-+ .=.+++|-|+|+-++.++..
T Consensus 5 ~L~~~IE~kR~eL~~l~~k--~Gl~~~~-----vI~~SQeLD~LIn~Y~k~~~ 50 (64)
T 2c0s_A 5 KLNDRIEAKKKELIYLVEK--YGFTHHK-----VISFSQELDRLLNLLIELKT 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCTTSHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666544321 1011222 23346677888888887764
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.25 E-value=31 Score=36.72 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
..+..++++|+.+++-+ +.+.+.++.|.+.+.+||+++-+|...+|.
T Consensus 45 ~dl~~~lk~le~~~~~L-------~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELL-------TLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444555555554433 345667888888999999999998888875
No 201
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.00 E-value=46 Score=26.62 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
|-.=+..|+.+.+.|..|.++|..++..|+.++.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566667777777777777777777777665
No 202
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=39.83 E-value=2.5e+02 Score=29.21 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKE 586 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e 586 (609)
.+++|++..+++...++.+++++....=..+......
T Consensus 164 ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~ 200 (406)
T 4dyl_A 164 KDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQH 200 (406)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888877444445544444
No 203
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=39.29 E-value=2.6e+02 Score=27.54 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKE 586 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~e 586 (609)
+...+++|+.+|.-..+++++ ...+++.|+.+..-...|
T Consensus 64 ~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~ee 103 (273)
T 3s84_A 64 VNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADE 103 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344556666666666555544 456677777766443333
No 204
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=39.23 E-value=1.6e+02 Score=24.07 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
+..++.....+....++-+...++.++.++++++..
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~ 73 (119)
T 3uun_A 38 VKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTG 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 344555666677777777777778888888887543
No 205
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=39.14 E-value=2.2e+02 Score=26.67 Aligned_cols=92 Identities=8% Similarity=0.064 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Q psy114 505 SAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE--KTNSAALKNQADS 582 (609)
Q Consensus 505 ~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~--~~~~~~lkkQ~~~ 582 (609)
...++.|.+..+.-...|......+.+.+......+ .--+.|...+++..++..+..+..... +.|++.+-+|-..
T Consensus 92 r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~--~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~ 169 (192)
T 2p22_C 92 KDKVQALLENARILESKYVASWQDYHSEFSKKYGDI--ALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLD 169 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHH--HHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 334444444444444455444433333332211111 222344445555555555554444332 6788888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 583 VGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 583 l~~eydrl~~e~~~l~ 598 (609)
..+.|-.-.+..+.++
T Consensus 170 ~R~~yH~RreK~~rw~ 185 (192)
T 2p22_C 170 IRTQYHLRREKLATWD 185 (192)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888843333333444
No 206
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=39.14 E-value=69 Score=26.02 Aligned_cols=34 Identities=6% Similarity=0.195 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy114 555 LKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 555 lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eyd 588 (609)
|+.++.....+-.+.+.+++.++-.++.+..-|+
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443
No 207
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.09 E-value=56 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy114 557 EKLSKTEEELKKEKTNSAALKNQADSVGKE 586 (609)
Q Consensus 557 ~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~e 586 (609)
+||++.+.++.+...++..||.+.++|.+|
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344555566666666555
No 208
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.85 E-value=1.6e+02 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
+++.|+.+-..+.+|-|.+...++.|
T Consensus 63 e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 63 QVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444433
No 209
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.64 E-value=37 Score=28.55 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++..+++..+.|.+|=|||.++...|..++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777666654
No 210
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.18 E-value=1.6e+02 Score=24.41 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+.++..+|...+...+||..|++=.-.|...
T Consensus 49 lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~E 80 (95)
T 3mov_A 49 KEREMAEIRDQMQQQLNDYEQLLDVKLALDME 80 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777778888777765555443
No 211
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=38.16 E-value=1.1e+02 Score=25.40 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=30.7
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA----ALKNQA-DSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~----~lkkQ~-~~l~~eydrl~~e~~~l~~~~~ 602 (609)
++++.|..|+...+.+|.....+|+.|+..++ .+-|++ +.=..+.+.|-++..+|+.+++
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777666666666655443 233332 2222334444444444544444
No 212
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.04 E-value=1.5e+02 Score=24.86 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=7.2
Q ss_pred cccCHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLS 560 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~ 560 (609)
...|+++++.|+.+|+
T Consensus 28 ~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 28 RSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 213
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.00 E-value=53 Score=26.30 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=23.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+|-.=+..|+.+-..+..|-++|..|+..|+.+++
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666777777777777777777777776654
No 214
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=37.84 E-value=21 Score=31.23 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKT---NSAALKNQADSVGKEYDRLL 591 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~---~~~~lkkQ~~~l~~eydrl~ 591 (609)
+..+.++++++++++.|++-+. -..||+.|.+...+.||+-.
T Consensus 13 AFaKRlk~sVKKLE~RLkKYepgSpPALALqqqIeKTK~RFdkYg 57 (154)
T 1qzv_F 13 XXXXXEKQALKKLQASLKLYADDSAPALAIKATMEXXXXXXXXXX 57 (154)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhccccccc
Confidence 4445566666666666666544 46689999999999998753
No 215
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.22 E-value=60 Score=24.39 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.++..+|...+...+||..|++=.-.|...
T Consensus 14 ~el~~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 14 SKNYHLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555566677777888777666555543
No 216
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.10 E-value=60 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+..|.+..+.+..|.+.|-++...|+..
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555544
No 217
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=36.78 E-value=82 Score=31.86 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=43.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEY-DRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~ey-drl~~e~~~l~~~~~ 602 (609)
+.+..++++++.+|+-...+++. .+.+++.++.+..-+..|| +++...-++|+.+|.
T Consensus 110 ~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~ 168 (307)
T 2l7b_A 110 ARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 168 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 34556677777777777777765 5678999999999999998 666666677888776
No 218
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.50 E-value=45 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++..|.....+.-|.|..|..+++..|+
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666677788888888877665
No 219
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.08 E-value=3e+02 Score=29.24 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=44.9
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHH
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT 562 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~ 562 (609)
.|..-.+.+.+=|.+|+.........-+.+.+....-..+|.+..+... ..++...+-.++|+..+.-.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~-----------dndn~~~e~S~eLe~ri~yI 123 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQ-----------QLDENYGHVSTELRRRIVTL 123 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhc-----------cchhHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544444555555554444433322111 11112222333444444444
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 563 EEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 563 ~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
++.+...=..+.+||+..+.+..+.-||
T Consensus 124 K~kVd~qi~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 124 KQRVATQVNRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332345666666666666666666
No 220
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=36.07 E-value=52 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKK--EKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~--~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+..+|+.|+.+...++.. ++.|.. .=.-|.+.+|.|++|.+++.+++.
T Consensus 29 ~~~~~~lk~E~~~lk~E~~stSaQDEFA----KWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNNSISAQDNYA----KWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCTTTCHH----HHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444444433 455553 123466677777777777776665
No 221
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.96 E-value=1.8e+02 Score=23.84 Aligned_cols=31 Identities=10% Similarity=0.308 Sum_probs=21.1
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhHHHHHHHhh
Q psy114 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQAD 513 (609)
Q Consensus 483 ~I~~i~~~l~~li~qla~~~~~~ea~~kQa~ 513 (609)
.|..+.-|+.+-|.-.+.+...+..+..+.+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777776665543
No 222
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.87 E-value=1.9e+02 Score=24.07 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEEL 566 (609)
Q Consensus 553 ~~lk~~l~~~~~~l 566 (609)
.++..||++++-.|
T Consensus 50 ~~ie~ElEeLTasL 63 (97)
T 2eqb_B 50 DKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444554444443
No 223
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=35.81 E-value=92 Score=29.11 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=15.8
Q ss_pred hhcccCHHHHHHH-HHHHHHHHHHHHHhhhhH
Q psy114 543 KYQKGDSDEIKRL-KEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 543 ~~~~~~~~e~~~l-k~~l~~~~~~l~~~~~~~ 573 (609)
.+.+....++++| ++-.++.++.++..|+|+
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1ise_A 151 DDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666 344444444445555554
No 224
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.29 E-value=1.3e+02 Score=24.48 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
+++.-+++.+.|.++.+|+.....+|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555544444444
No 225
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=35.26 E-value=92 Score=28.96 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=25.5
Q ss_pred HhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527 (609)
Q Consensus 487 i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~ 527 (609)
-...|.+|+.+.|. +.++++.+-..++-+++|+|.-
T Consensus 15 Rk~~Lk~lll~kA~-----e~L~~E~e~k~eEKkkiLaER~ 50 (180)
T 1j1e_C 15 RKLQLKTLLLQIAK-----QELEREAEERRGEKGRALSTRA 50 (180)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666766554 5577888888888899998873
No 226
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.07 E-value=1e+02 Score=25.34 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhHHHHH
Q psy114 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYD 520 (609)
Q Consensus 490 ~l~~li~qla~~~~~~ea~~kQa~sa~~~ak 520 (609)
.+..+|++...+......+..|-+......+
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~ 32 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQIN 32 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888877777766666554433
No 227
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=34.99 E-value=68 Score=26.57 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
|+.+=+.-=|.++.|.++|.++...||.+.
T Consensus 55 DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 55 DFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333455555666666666666654
No 228
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=34.95 E-value=88 Score=24.42 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
|+.+|++.++-+.+ |.|.|--..=+++-|-+=|-+..++||.
T Consensus 33 eI~~L~e~i~lk~k-------d~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 33 EIRRLKEVIALKNK-------NTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcc-------cHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 44455555544443 6666666677777777777776666653
No 229
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=34.93 E-value=67 Score=20.60 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALK 577 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lk 577 (609)
|+...|.||...+++|..-+-|+.++|
T Consensus 3 elaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655554444555544
No 230
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.82 E-value=1.9e+02 Score=25.95 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.+.+.+|.+|+++..+++.++-++.+.+-++.+++
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888777776666555555555555444
No 231
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=34.71 E-value=55 Score=30.93 Aligned_cols=35 Identities=11% Similarity=0.346 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEE----ELKKEKTNSAALKNQAD 581 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~----~l~~~~~~~~~lkkQ~~ 581 (609)
.+.+++++|+.++++..+ .+.++.+|++.+||.++
T Consensus 39 ~~~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ 77 (197)
T 1dkg_A 39 PRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTE 77 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777766653 56666677777776543
No 232
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=34.71 E-value=1.1e+02 Score=31.35 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=12.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHH
Q psy114 568 KEKTNSAALKNQADSVGKEYD 588 (609)
Q Consensus 568 ~~~~~~~~lkkQ~~~l~~eyd 588 (609)
....+++.|++|.+.+.+||+
T Consensus 173 ~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 173 NQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HTTCCHHHHHHHHHHHTGGGC
T ss_pred cccccHHHHHHHHHHHHHHHH
Confidence 334466666666666666665
No 233
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=34.66 E-value=2.6e+02 Score=28.03 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhcC-----CCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy114 507 ALKSQADSVGKEYDRLLKEHEKVQKVVTEQG-----DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA 574 (609)
Q Consensus 507 a~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~-----~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~ 574 (609)
.+|+||..|=.+|.+..+|+-.++....+.. ......|+..+..-.+.|+..+.++-.--...+.|+.
T Consensus 49 ~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~~~~~~~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLs 121 (302)
T 2y3a_B 49 QMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLR 121 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhh
Confidence 4899999999999999988888766532211 1122345555555556666666555443333333443
No 234
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.39 E-value=1.8e+02 Score=24.42 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS-----VGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~-----l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+++|.+|+...+..|-.|...+..-.+|.|. ...-|++-..+.+.+|.++.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~Kia 92 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLG 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776666666666653 34456666666666666554
No 235
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=34.36 E-value=1.5e+02 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.++.|-++++..++++..-+..+.+|.+||..+
T Consensus 236 ~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 236 HLLEQIKELEKEREKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555666777777777765
No 236
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=34.33 E-value=2.9e+02 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
.++.++++..+.+..+.|... +.+.++.+.+.|.+..+.+....
T Consensus 171 ~~~k~~i~~~l~~~~~~L~~~--~~~~i~~~~~~L~~~~~~i~~~~ 214 (219)
T 4e81_A 171 ADDKTAIESALTALETALKGE--DKAAIEAKMQELAQVSQKLMEIA 214 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666676666666543 67778888777777776665543
No 237
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.32 E-value=85 Score=31.43 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHhhhh
Q psy114 488 KEKLSKTEEELKKEKTNSAALKSQADSV 515 (609)
Q Consensus 488 ~~~l~~li~qla~~~~~~ea~~kQa~sa 515 (609)
..++..+-.+++.+.+..+..+.+.+.+
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a 95 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLA 95 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 238
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.93 E-value=1.3e+02 Score=24.89 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=8.6
Q ss_pred HHHHHhhhhHHHHHHHhhhhHH
Q psy114 496 EELKKEKTNSAALKSQADSVGK 517 (609)
Q Consensus 496 ~qla~~~~~~ea~~kQa~sa~~ 517 (609)
+++..+.+..+++..+...+..
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELED 33 (95)
T ss_dssp ------CCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566655544444
No 239
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.86 E-value=93 Score=25.21 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q psy114 558 KLSKTEEELKKEKTNSAALKNQA 580 (609)
Q Consensus 558 ~l~~~~~~l~~~~~~~~~lkkQ~ 580 (609)
||+....++.+.+.++..|..+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555555544
No 240
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=33.53 E-value=2e+02 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=26.6
Q ss_pred hhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
+..++.+...+.....+-+...++.++.++++++..
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~ 73 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQG 73 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555777777778888888888888888888543
No 241
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=32.84 E-value=1.2e+02 Score=25.38 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=15.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHH
Q psy114 504 NSAALKSQADSVGKEYDRLLKEHEK 528 (609)
Q Consensus 504 ~~ea~~kQa~sa~~~ak~~~~e~~~ 528 (609)
...+...+++..-+.|+.++++-+.
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMel 59 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDL 59 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777655533
No 242
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.77 E-value=75 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy114 573 SAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~ 592 (609)
+..+|-..+-=-..|.+|++
T Consensus 61 LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 61 LLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHc
Confidence 34445444444445555544
No 243
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.73 E-value=3.4e+02 Score=29.37 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=7.4
Q ss_pred HHHHHHHhhhh
Q psy114 592 KEHEKVQKVVT 602 (609)
Q Consensus 592 ~e~~~l~~~~~ 602 (609)
+.|..+|+||+
T Consensus 176 ~sY~~~QKQLe 186 (562)
T 3ghg_A 176 KDYEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55677777766
No 244
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.72 E-value=1.3e+02 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
|.|-..|.|-..+|..|.-||-.|
T Consensus 23 erdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 23 ERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHH
Confidence 345556667677777777776544
No 245
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=32.53 E-value=23 Score=25.76 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
|.+++.-++.=++.++++- .=.|+.+|+.-.+.|.+||+|+
T Consensus 6 L~EQ~~~I~~~I~qAk~~r--RfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAG--RMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555554433211 1237888888888899999886
No 246
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.42 E-value=1.4e+02 Score=25.43 Aligned_cols=59 Identities=7% Similarity=0.108 Sum_probs=35.9
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy114 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSA----ALKNQA-DSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 544 ~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~----~lkkQ~-~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.++.+..|+...+.+|.....+|+.|+..++ .+-|++ +.=..+.+-|-++..+|+.+++
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888877877765444 333332 2233344555555666666655
No 247
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=32.17 E-value=1.3e+02 Score=28.04 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=15.3
Q ss_pred hhcccCHHHHHHH-HHHHHHHHHHHHHhhhhH
Q psy114 543 KYQKGDSDEIKRL-KEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 543 ~~~~~~~~e~~~l-k~~l~~~~~~l~~~~~~~ 573 (609)
.+.+....++++| ++-.++.++.++..|+|+
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1is1_A 151 DEDRKAQEEIQKLTDVAVKKIDEVLAAKEKEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666 334444444444444444
No 248
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.08 E-value=70 Score=23.70 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=15.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH---hhhhHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKK---EKTNSAAL 576 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~---~~~~~~~l 576 (609)
.|+.++.+|+.|.+...+.++. |.+++|.+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655554433 44455533
No 249
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=31.90 E-value=3.6e+02 Score=26.13 Aligned_cols=60 Identities=5% Similarity=0.097 Sum_probs=37.0
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKE-----------KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~-----------~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+...+..+.+.++.+++.....+.+. ..+.+.++...+.+.+.|+.|.+--.+=+..|+
T Consensus 248 ~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R~~~L~ 318 (322)
T 1u4q_A 248 AAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 318 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666665544333221 235567778888888888888776666666655
No 250
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=31.85 E-value=3.4e+02 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
..-|.|...|.+.+-.++.++++.|.
T Consensus 134 r~~k~~~~~L~~~f~~~~~~Fq~~Q~ 159 (279)
T 2xhe_B 134 RIRQSQHSSLSRKFVKVMTRYNDVQA 159 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666554
No 251
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=31.84 E-value=2.7e+02 Score=24.59 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~~ 603 (609)
++-|++.++..++ .++.+.++.+.+...++.+.+..++++++++.
T Consensus 100 ~~~l~~ri~~l~~-------~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 100 ISFLEKRLKEYDE-------AIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444 66666677777777777777777888776654
No 252
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.77 E-value=64 Score=26.14 Aligned_cols=41 Identities=5% Similarity=0.135 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
++.|+.|+..+.-.++....+++.|+++-..+-.+-|+.+.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333444666666666666555555444
No 253
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=31.74 E-value=33 Score=33.40 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q psy114 570 KTNSAALKNQADSVGKEY-DRLLKEHEKVQKVVT 602 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~ey-drl~~e~~~l~~~~~ 602 (609)
+.+++++|.+.+-+..|| +++.+..++|+.+|.
T Consensus 109 ~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~ 142 (243)
T 2a01_A 109 QEEMELYRQKVEPLRAELQEGARQKLHELQEKLS 142 (243)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346667777777776666 344444444554443
No 254
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.53 E-value=1.6e+02 Score=22.13 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl 590 (609)
+-..|+++.+.|..|++.|
T Consensus 38 ~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 38 EKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554
No 255
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.25 E-value=82 Score=33.30 Aligned_cols=14 Identities=50% Similarity=0.776 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKT 562 (609)
Q Consensus 549 ~~e~~~lk~~l~~~ 562 (609)
+++++.|++++++.
T Consensus 81 ~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 81 KEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 256
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=31.07 E-value=2.3e+02 Score=23.49 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKK-EKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~-~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
.+.++++..+++..+.|.. ...+.+.++.+.+.|.+-.+.+...
T Consensus 32 ~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~ 76 (113)
T 1ud0_A 32 EDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITK 76 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555555542 2237788888888888877777654
No 257
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.03 E-value=90 Score=32.91 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
...|+.||++..+..++.+.+++.++...+.+..++-....+..+|.++++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555555555555544444444444444344444444443
No 258
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.93 E-value=2.3e+02 Score=23.52 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=25.0
Q ss_pred CCChhhHHHhhhhhHHHHHHHHhhhhHHHHH
Q psy114 479 GDSDEIKRLKEKLSKTEEELKKEKTNSAALK 509 (609)
Q Consensus 479 ~~~~~I~~i~~~l~~li~qla~~~~~~ea~~ 509 (609)
+|.-....++++|..|..++..+..+++++.
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888877777
No 259
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.92 E-value=2.7e+02 Score=24.31 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
.+.+.+|.+|+++..+++.++-++.+.+-++.+++
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888777776666655555555555444
No 260
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=30.81 E-value=64 Score=26.46 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=35.5
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
+|+..|=.++-.|+-+|...-.+-...+.|+..|..+--.--+-||+|+|.
T Consensus 35 ~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 35 PHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555565555555555568999999999999999999774
No 261
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=30.73 E-value=3.3e+02 Score=29.04 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+..+.-|+...+.+.+....|......++
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555556665555555555555444443
No 262
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.64 E-value=71 Score=32.60 Aligned_cols=42 Identities=5% Similarity=0.066 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
.+|+.+|+..+...+.+++..+..++.++++.+.|......|
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433344444444444444444444444333
No 263
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=30.59 E-value=1.5e+02 Score=27.71 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=14.9
Q ss_pred hhcccCHHHHHHH-HHHHHHHHHHHHHhhhhH
Q psy114 543 KYQKGDSDEIKRL-KEKLSKTEEELKKEKTNS 573 (609)
Q Consensus 543 ~~~~~~~~e~~~l-k~~l~~~~~~l~~~~~~~ 573 (609)
.+.+....++++| ++-.++.++.++..|+|+
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1dd5_A 151 DDAKRLENEIQKLTDEFIEKLDEVFEIKKEEI 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666 333444444444444444
No 264
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.21 E-value=1.2e+02 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 575 ALKNQADSVGKEYDRL 590 (609)
Q Consensus 575 ~lkkQ~~~l~~eydrl 590 (609)
.|+++.+.|..|.+.|
T Consensus 40 ~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 40 QLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 265
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=30.12 E-value=2.3e+02 Score=27.21 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKT 571 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~ 571 (609)
..++++.+.+++..+.+++.+++
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a 119 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKA 119 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444443333333
No 266
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.95 E-value=87 Score=29.56 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 577 KNQADSVGKEYDRLLK 592 (609)
Q Consensus 577 kkQ~~~l~~eydrl~~ 592 (609)
-.+++-|..=++||+.
T Consensus 145 ae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 145 AEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444444444555543
No 267
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=29.70 E-value=1.3e+02 Score=28.00 Aligned_cols=32 Identities=6% Similarity=0.152 Sum_probs=16.5
Q ss_pred hhcccCHHHHHHH-HHHHHHHHHHHHHhhhhHH
Q psy114 543 KYQKGDSDEIKRL-KEKLSKTEEELKKEKTNSA 574 (609)
Q Consensus 543 ~~~~~~~~e~~~l-k~~l~~~~~~l~~~~~~~~ 574 (609)
.+.+....++++| ++-.++.++.++..|+|+.
T Consensus 151 D~~k~~e~~iQkltd~~i~~id~~~~~KEkEim 183 (185)
T 1wqg_A 151 DEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666 3444444444455555543
No 268
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.60 E-value=1.8e+02 Score=23.33 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 557 EKLSKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 557 ~~l~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
++|++.++.-.....|++.++++.+.|
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344455555554443
No 269
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=29.54 E-value=70 Score=30.63 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+++.+++|.+.+...|-|+..|..+.+++.
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555443
No 270
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=29.52 E-value=3.2e+02 Score=24.90 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHH
Q psy114 511 QADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT-----------NSAALKNQ 579 (609)
Q Consensus 511 Qa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~-----------~~~~lkkQ 579 (609)
+++..+..++.+..=-+.....+.....+.+....+.+.++-+.++.++......+..... +...++.+
T Consensus 4 ~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~ 83 (216)
T 1u5p_A 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDK 83 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy114 580 ADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 580 ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+...|++|.+--.+-+..|+
T Consensus 84 ~~~l~~~w~~L~~~~~~R~~~Le 106 (216)
T 1u5p_A 84 RETINGRFQRIKSMAAARRAKLN 106 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 271
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.39 E-value=1.3e+02 Score=24.31 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Q psy114 560 SKTEEELKKEKTNSAALKNQADSV 583 (609)
Q Consensus 560 ~~~~~~l~~~~~~~~~lkkQ~~~l 583 (609)
..-.++++.-+..++..|+....|
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444444
No 272
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=29.36 E-value=3.3e+02 Score=24.77 Aligned_cols=60 Identities=3% Similarity=0.111 Sum_probs=32.3
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKE-----------KTNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~-----------~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.+.+.+..+-+.++.++....+.+... ..+.+.++...+.+...|++|.+.-.+-+..|+
T Consensus 140 ~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~~~l~~rw~~l~~~~~~R~~~L~ 210 (214)
T 1s35_A 140 EAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLR 210 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444433221 123445666677777777777666665555554
No 273
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.29 E-value=1.4e+02 Score=28.89 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~ 601 (609)
+.....++|+++..+..+|++.+.|..++.+|.+.-.+.--.+.|.|.++--..
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 356688999999999999999999999999999999888888888888765433
No 274
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.99 E-value=89 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
.=+..|+.+...+..|.+.|..+++.|+.+++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665554
No 275
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.77 E-value=1e+02 Score=29.01 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=10.4
Q ss_pred hhcccCHHHHHHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~ 564 (609)
+|++.|..+++.|++|+..+++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~Lke 136 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKK 136 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444433
No 276
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.25 E-value=1.3e+02 Score=30.44 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=40.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQ-ADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ-~~~l~~eydrl~~e~~~l~ 598 (609)
.-.+.+++|+.++++.+++++..++++..+.++ .+.|..-|+.+..+.+..+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 275 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYK 275 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557888889988888888888888888888 7778888888876665544
No 277
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.03 E-value=1.9e+02 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=14.7
Q ss_pred HHHHHhhhhHHHHHHHhhhhHHHHHHHH
Q psy114 496 EELKKEKTNSAALKSQADSVGKEYDRLL 523 (609)
Q Consensus 496 ~qla~~~~~~ea~~kQa~sa~~~ak~~~ 523 (609)
+||-......-..+.||..-|.+.-.++
T Consensus 25 ~qLT~Aq~~l~~~eaQAaTCNqTV~tL~ 52 (99)
T 3ni0_A 25 RQLTRTQDSLLQAETQANSCNLTVVTLQ 52 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444556666666655555
No 278
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=27.92 E-value=1.5e+02 Score=23.05 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy114 514 SVGKEYDRLLKEHEKVQKVVT 534 (609)
Q Consensus 514 sa~~~ak~~~~e~~~l~~~~~ 534 (609)
++-++-++++.||..|+.++.
T Consensus 5 ~~~e~~q~ll~EN~~LreAlk 25 (70)
T 3brv_B 5 GAPETLQRCLEENQELRDAIR 25 (70)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHH
Confidence 345566789999999988863
No 279
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=27.90 E-value=2.6e+02 Score=24.60 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=14.0
Q ss_pred hhHHHHHHHhhhhHHHHHHH
Q psy114 503 TNSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 503 ~~~ea~~kQa~sa~~~ak~~ 522 (609)
.+.+.++.|++...++.+++
T Consensus 20 ~~i~~Iq~y~~~i~~ar~Rl 39 (133)
T 3ls0_A 20 EKIAQLQVYVNPIAVARDGM 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777776
No 280
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.83 E-value=1.7e+02 Score=21.44 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
.+.+++..+..........+..++..+.+...+..+-....++-.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333344444444444444444444444444443
No 281
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.74 E-value=1.7e+02 Score=24.41 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=4.9
Q ss_pred HhhhhHHHHHHHH
Q psy114 511 QADSVGKEYDRLL 523 (609)
Q Consensus 511 Qa~sa~~~ak~~~ 523 (609)
+++..-+.|+.++
T Consensus 53 ~ie~~ldEA~eLl 65 (102)
T 2qyw_A 53 DFDEKQQEANETL 65 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 282
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=27.66 E-value=5.1e+02 Score=26.47 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey 587 (609)
...++..||.++..-++.++|.|.-+-.|-.|.+.|.+.|
T Consensus 521 dqakldqlknqvdgyeksikkqesaiyelhnqidalrkay 560 (761)
T 4fye_A 521 DQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAY 560 (761)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777888888888777
No 283
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.63 E-value=5.4e+02 Score=26.76 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy114 548 DSDEIKRLKEKLSKTEE 564 (609)
Q Consensus 548 ~~~e~~~lk~~l~~~~~ 564 (609)
+.+++.++++.+.+.++
T Consensus 402 ~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 34444444444444443
No 284
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=27.51 E-value=2.6e+02 Score=30.30 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEE 564 (609)
Q Consensus 551 e~~~lk~~l~~~~~ 564 (609)
|++||.+|++++.+
T Consensus 455 e~~kl~~E~~~l~~ 468 (514)
T 2inr_A 455 DIVALEGEHKELEA 468 (514)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 285
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.41 E-value=4.9e+02 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHH
Q psy114 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEH 526 (609)
Q Consensus 489 ~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~ 526 (609)
..|..--.+|+...+..++ |.+++++-++++
T Consensus 9 ~~la~yq~elarvqkana~-------aka~Ye~~~ae~ 39 (497)
T 3iox_A 9 AKLTAYQTELARVQKANAD-------AKAAYEAAVAAN 39 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3344344445554444444 345555545444
No 286
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.24 E-value=1e+02 Score=30.18 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 574 AALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 574 ~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
+.|+.+...+.+|.++|.+|.++|+
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444455555555555554
No 287
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=27.17 E-value=4.6e+02 Score=28.24 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=16.3
Q ss_pred HHHhhhhhHHHHHHHHhhhhHHHHHHHh
Q psy114 485 KRLKEKLSKTEEELKKEKTNSAALKSQA 512 (609)
Q Consensus 485 ~~i~~~l~~li~qla~~~~~~ea~~kQa 512 (609)
..+..-+.++|+.|..-....|..++-+
T Consensus 409 ~~ik~i~~s~i~sL~eKi~~AE~~~~k~ 436 (526)
T 2wb7_A 409 EKINATTKAMINSLQEKIDEAEQLLAKA 436 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666666666655
No 288
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.85 E-value=3e+02 Score=23.55 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
++-|+++++..++ .++.+.++.+.+...++.+.++.++++++
T Consensus 90 ~~~l~~r~~~l~~-------~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 90 MESIKSQKNELES-------TLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555544443 56666666777777777777777776654
No 289
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.62 E-value=3.2e+02 Score=24.42 Aligned_cols=11 Identities=9% Similarity=-0.109 Sum_probs=4.0
Q ss_pred HHHHHhhhhHH
Q psy114 496 EELKKEKTNSA 506 (609)
Q Consensus 496 ~qla~~~~~~e 506 (609)
+-++...+.++
T Consensus 27 nrla~~~am~~ 37 (158)
T 3tul_A 27 SRLAVWQAMIE 37 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 290
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.58 E-value=3.8e+02 Score=24.64 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=55.0
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCc-chhh-----------cccCHHHHHHH
Q psy114 488 KEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK-DDKY-----------QKGDSDEIKRL 555 (609)
Q Consensus 488 ~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~-~~~~-----------~~~~~~e~~~l 555 (609)
.++-.-|.....++..-.+++.++.+...++...+.+..+++++-..+.+.+. +..+ .=.+.+|-..+
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~Ai 127 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYAL 127 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHH
Confidence 33334444555556666666677777776666666655544443322221111 1111 12223334445
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy114 556 KEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587 (609)
Q Consensus 556 k~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~ey 587 (609)
+--+--++++|+.-.-++++.=|+...|++|=
T Consensus 128 eDaIy~L~~al~~g~I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 128 TDTIECLSRMLHRGTIPLDTFVKQGRELARQQ 159 (174)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 55555666677777778888888888887763
No 291
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=26.32 E-value=2.9e+02 Score=23.25 Aligned_cols=45 Identities=9% Similarity=0.235 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKE-KTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~-~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
..+.++++..+.+..+.|... .++.+.++.+.+.|.+-.+.+...
T Consensus 45 ~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k 90 (120)
T 2p32_A 45 PEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISK 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555555432 237888888888888887777654
No 292
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=26.29 E-value=1.3e+02 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=15.4
Q ss_pred hHHHhhhhhHHHHHHHHhhhhHHHHHHHhhh
Q psy114 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADS 514 (609)
Q Consensus 484 I~~i~~~l~~li~qla~~~~~~ea~~kQa~s 514 (609)
+...++++..|.++++......+.+...++.
T Consensus 43 l~~~~~kh~~le~El~a~e~~v~~v~~~g~~ 73 (283)
T 3pe0_A 43 MTAKKESYSALMRELELKEKKIKELQNAGDR 73 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555555555555555444444444443
No 293
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=26.28 E-value=1.9e+02 Score=27.52 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=5.4
Q ss_pred cccCHHHHHHH
Q psy114 545 QKGDSDEIKRL 555 (609)
Q Consensus 545 ~~~~~~e~~~l 555 (609)
.+....++++|
T Consensus 177 ~k~~e~eiQkl 187 (209)
T 4gfq_A 177 LRGYTEDIQKE 187 (209)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444555555
No 294
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=25.97 E-value=1.6e+02 Score=28.38 Aligned_cols=89 Identities=13% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHhhhhhHHHHHHHH-hhhhHHHHHHHhhhhHHHHHHHHHHHHH-HHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHH
Q psy114 486 RLKEKLSKTEEELKK-EKTNSAALKSQADSVGKEYDRLLKEHEK-VQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTE 563 (609)
Q Consensus 486 ~i~~~l~~li~qla~-~~~~~ea~~kQa~sa~~~ak~~~~e~~~-l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~ 563 (609)
.++.+|.....+++. +..+.++++.+.+...+..+.-+.++-. ++..+.- -.++--.++...+++||..|.-..
T Consensus 92 e~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p----~~eelr~kl~~~veelk~~l~P~~ 167 (243)
T 2a01_A 92 EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSP----LGEEMRDRARAHVDALRTHLAPYS 167 (243)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCS----STHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444444455433 3346677776666655555444433321 1111100 001112233444555555555444
Q ss_pred HHHHH-hhhhHHHHHH
Q psy114 564 EELKK-EKTNSAALKN 578 (609)
Q Consensus 564 ~~l~~-~~~~~~~lkk 578 (609)
++++. .+..++.||.
T Consensus 168 ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 168 DELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44433 3444555555
No 295
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.92 E-value=2e+02 Score=21.14 Aligned_cols=32 Identities=6% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~ 581 (609)
.++++|..++..+..++.....|+.+++....
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555555555555555444
No 296
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.72 E-value=1.3e+02 Score=25.00 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhh-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 546 KGDSDEIKRLKEKLSKTEEELKKEK-------------------TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 546 ~~~~~e~~~lk~~l~~~~~~l~~~~-------------------~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..+..+..+++.+++..++.+...+ ..++....+.+.+..++..|.++...+...+.
T Consensus 20 ~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 20 NEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544332 23567778888888888888888877776543
No 297
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=25.52 E-value=3e+02 Score=24.11 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=10.7
Q ss_pred hHHHHHHHhhhhHHHHHHH
Q psy114 504 NSAALKSQADSVGKEYDRL 522 (609)
Q Consensus 504 ~~ea~~kQa~sa~~~ak~~ 522 (609)
+.+.++.|++...++.+++
T Consensus 19 ~i~~iq~y~~~i~~~r~Rl 37 (130)
T 3zsu_A 19 QITRIQDYLRDIEKNAERF 37 (130)
T ss_dssp HHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556666666655554
No 298
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=25.45 E-value=6.4e+02 Score=26.85 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy114 124 AQQANLLAQNEASMNQARQAAVAAQALLDGPRGKW 158 (609)
Q Consensus 124 ~~~~~l~~~~~a~~kqa~~a~~~a~~~~~~~~~~~ 158 (609)
++-..|..+.+.-+|.|++|-+-|.-+|.+..+|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (602)
T 1cii_A 155 REARSLIEQAEKRQKDAQNADKKAADMLAEYERRK 189 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhh
Confidence 45566778888888999999998888887766663
No 299
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=25.35 E-value=1.7e+02 Score=24.07 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=39.2
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 542 ~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
+.+...|-..+-.|+-+|...-++-.....++..|-...-...+=||+|+|+
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~ 83 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQ 83 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777665555555668888888889999999999876
No 300
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.32 E-value=2.2e+02 Score=32.18 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~ 594 (609)
.|.+||++|.+++.++.+.-+.-+..-+++-+-+.+|+..+.+++
T Consensus 402 le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 402 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 344555555555544444333333333333444444444444444
No 301
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=25.23 E-value=3.7e+02 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKV 597 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l 597 (609)
-|+.+++||++.+++||.+|--..|++
T Consensus 121 vdv~~~qk~ad~l~k~~r~Ld~~IQ~~ 147 (154)
T 3kdq_A 121 MDAREIRKKADLAAKEYRQLDVDIQRL 147 (154)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999997766654
No 302
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.19 E-value=3e+02 Score=23.07 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 569 EKTNSAALKNQADSVGKEYDRLLKEHEK 596 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l~~eydrl~~e~~~ 596 (609)
.++.+.+|+++-..+-.+|...-.+|.+
T Consensus 93 r~~q~~~L~~kf~e~m~~y~~~q~~yre 120 (127)
T 1ez3_A 93 RKTQHSTLSRKFVEVMSEYNATQSDYRE 120 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999988777654
No 303
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=24.93 E-value=1.9e+02 Score=22.81 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~ 592 (609)
-+|..|+-|....+.-++-+-++-.|..|.|.|-.||...+.
T Consensus 8 lvehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfmq 49 (102)
T 3vjf_A 8 LVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQ 49 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHh
Confidence 344455555555666666777888999999999999877654
No 304
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.61 E-value=36 Score=33.51 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=7.3
Q ss_pred hhcccCHHHHHHHHHHH
Q psy114 543 KYQKGDSDEIKRLKEKL 559 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l 559 (609)
+|++.|++|+.+|+.++
T Consensus 26 ~eN~~Lk~e~~~l~~~~ 42 (255)
T 2j5u_A 26 TENQHLKERLEELAQLE 42 (255)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 305
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.58 E-value=82 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy114 549 SDEIKRLKEKLSKTEEELKKEK 570 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~ 570 (609)
+.++++|+.+|.+..+++++.|
T Consensus 13 Rkk~eeler~lrk~kk~iKklE 34 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLE 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666665555554443
No 306
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.51 E-value=1.5e+02 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 553 ~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
+.|+..++....+++..++++..++...+.|..|...|-++
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44445555555555555556666666555555555444333
No 307
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=3.4e+02 Score=23.38 Aligned_cols=96 Identities=9% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHH-
Q psy114 497 ELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAA- 575 (609)
Q Consensus 497 qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~- 575 (609)
+...+........-+..+....-++++..- ....+...+++.+.++..+..++-++....=+++.+
T Consensus 11 ef~~l~~~is~~I~~In~~vs~l~r~v~~L-------------GT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 11 DFSSIIQTCSGNIQRISQATAQIKNLMSQL-------------GTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy114 576 -----------LKNQADSVGKEYDRLLKEHEKVQKVVTEQG 605 (609)
Q Consensus 576 -----------lkkQ~~~l~~eydrl~~e~~~l~~~~~~~~ 605 (609)
-|-|-+.|.+||-..+.+++++|.+..+.+
T Consensus 78 ~~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 78 PLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 308
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.37 E-value=2.8e+02 Score=29.70 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=9.1
Q ss_pred HHHhhhhHHHHHHHHHH
Q psy114 509 KSQADSVGKEYDRLLKE 525 (609)
Q Consensus 509 ~kQa~sa~~~ak~~~~e 525 (609)
.+++++..++...+|+.
T Consensus 378 Ir~s~~~~~a~~~L~~~ 394 (470)
T 3ilw_A 378 IRASETVDIARAGLIEL 394 (470)
T ss_dssp HHHCSSHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHh
Confidence 44555555555566543
No 309
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=24.37 E-value=1.3e+02 Score=32.40 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q psy114 572 NSAALKNQADSVGK------EYDRLLKEHEKVQK 599 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~------eydrl~~e~~~l~~ 599 (609)
+++.+..|.+.+.+ |++.|.+++..|.+
T Consensus 208 ~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 208 QIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 44444444444444 55555555555443
No 310
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.25 E-value=1.4e+02 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=5.8
Q ss_pred cccCHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKL 559 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l 559 (609)
++.|..+++.|++|+
T Consensus 48 N~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 48 NEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344433333
No 311
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.21 E-value=1.2e+02 Score=24.35 Aligned_cols=7 Identities=43% Similarity=0.420 Sum_probs=2.8
Q ss_pred hHHHHHH
Q psy114 572 NSAALKN 578 (609)
Q Consensus 572 ~~~~lkk 578 (609)
+++.||.
T Consensus 61 ni~~lk~ 67 (78)
T 3iv1_A 61 NIELLKK 67 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 312
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.87 E-value=87 Score=30.68 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=6.2
Q ss_pred hhhhHHHHHHHHHHH
Q psy114 569 EKTNSAALKNQADSV 583 (609)
Q Consensus 569 ~~~~~~~lkkQ~~~l 583 (609)
++.+++.||+|.+.|
T Consensus 80 ar~El~~LkeElerL 94 (251)
T 3m9b_A 80 ARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444433
No 313
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=23.81 E-value=11 Score=35.30 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=18.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~ 580 (609)
...+.+++++|++++++.++.+.++.+|.+.+||.+
T Consensus 21 ~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~ 56 (177)
T 3a6m_A 21 AQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRM 56 (177)
T ss_dssp HSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555543
No 314
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=23.69 E-value=3.3e+02 Score=26.09 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=9.1
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q psy114 510 SQADSVGKEYDRLLKEHEKV 529 (609)
Q Consensus 510 kQa~sa~~~ak~~~~e~~~l 529 (609)
|+-..+..|++-|.+.-.+.
T Consensus 41 kAl~a~~~A~~~y~dA~~Ki 60 (222)
T 3ok8_A 41 RAFHALSEAAEVYFSAIQKI 60 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555444443
No 315
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.64 E-value=2.2e+02 Score=25.79 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy114 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~ 600 (609)
+|+++|+.|-.+..+.+++....+..|-.|- ..|..|.+.+.++..+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~----vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQ----IAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 3455555555555444444445555555553 3445677777777643
No 316
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.62 E-value=64 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy114 583 VGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 583 l~~eydrl~~e~~~l~~~~~ 602 (609)
+..+|++|.+|+..|+.+++
T Consensus 32 v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554
No 317
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.56 E-value=2.2e+02 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 570 KTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 570 ~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
++...+|+++-..+..+|..+-.+|.
T Consensus 125 ~~q~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 125 KTQYSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888887755544
No 318
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.32 E-value=76 Score=30.36 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 573 SAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 573 ~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
+..++.|...|.+||+||..++++|..|++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 319
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.09 E-value=1.4e+02 Score=23.86 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEE 564 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~ 564 (609)
.+|.++|-+++..+++
T Consensus 33 L~EN~~Lh~~ie~~~e 48 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDS 48 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666666655
No 320
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=23.06 E-value=2.6e+02 Score=21.95 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=28.8
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy114 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599 (609)
Q Consensus 543 ~~~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e~~~l~~ 599 (609)
.++..|.+.|..|+..|++...+-...+.++..+- +.|.--.+.|.+=.+.|.+
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~---e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL---EILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHH
Confidence 44555677777777777776654444444444333 3343344444444444443
No 321
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.03 E-value=1e+02 Score=19.37 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy114 554 RLKEKLSKTE 563 (609)
Q Consensus 554 ~lk~~l~~~~ 563 (609)
.|+++.+..+
T Consensus 5 alekkcaale 14 (31)
T 3ljm_A 5 ALEKKCAALE 14 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 322
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.91 E-value=1.3e+02 Score=22.83 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy114 571 TNSAALKNQADSVGKEYDRLLKEHEKVQKVVT 602 (609)
Q Consensus 571 ~~~~~lkkQ~~~l~~eydrl~~e~~~l~~~~~ 602 (609)
..++.|..|.+.|..|-+.|..|...|+.++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777777777777776653
No 323
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.88 E-value=97 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lk 577 (609)
.|...++.|..|.++..+.+++++.++..++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777766776665
No 324
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.85 E-value=1.4e+02 Score=23.76 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=28.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584 (609)
Q Consensus 545 ~~~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~ 584 (609)
+..|...+.-++.-++++.+.+.+...+++.|+.|...|.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777777777888877776663
No 325
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=22.77 E-value=3.2e+02 Score=23.66 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=13.4
Q ss_pred hcccCHHHHHHHHH-HHHHHHHHHHHhhhhH
Q psy114 544 YQKGDSDEIKRLKE-KLSKTEEELKKEKTNS 573 (609)
Q Consensus 544 ~~~~~~~e~~~lk~-~l~~~~~~l~~~~~~~ 573 (609)
+.+....++++|-. -+++.++.++..|+|+
T Consensus 90 e~k~~e~eIQKLTDkyIkkID~ll~~KEKEI 120 (123)
T 3lhp_S 90 DISQSLWDVQKLTDAAIKKIEAALADMEAWL 120 (123)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666633 3333333344444443
No 326
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.69 E-value=1.1e+02 Score=27.39 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy114 590 LLKEHEKV 597 (609)
Q Consensus 590 l~~e~~~l 597 (609)
|..|+++|
T Consensus 99 LeAE~aKL 106 (146)
T 2xnx_M 99 LTIEKAKL 106 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 327
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=22.59 E-value=7e+02 Score=26.31 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=4.9
Q ss_pred cccCCCCCccc
Q psy114 458 CGWCESSKRCE 468 (609)
Q Consensus 458 C~WC~~~~~C~ 468 (609)
+-|+.++....
T Consensus 17 ~FW~~~G~~~L 27 (486)
T 3haj_A 17 SFWEVGNYKRT 27 (486)
T ss_dssp CTTSTTTTHHH
T ss_pred cCCCCcCHHHH
Confidence 44554444333
No 328
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=22.57 E-value=3.1e+02 Score=24.42 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=9.7
Q ss_pred CChhhHHHhhhhh
Q psy114 480 DSDEIKRLKEKLS 492 (609)
Q Consensus 480 ~~~~I~~i~~~l~ 492 (609)
..+.+..|+.+|.
T Consensus 41 k~~SleEIqkKLe 53 (143)
T 3ryc_E 41 RDPSLEEIQKKLE 53 (143)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4566778888887
No 329
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=22.46 E-value=2.2e+02 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=11.7
Q ss_pred cccCHHHHHHH-HHHHHHHHHHHHHhhhh
Q psy114 545 QKGDSDEIKRL-KEKLSKTEEELKKEKTN 572 (609)
Q Consensus 545 ~~~~~~e~~~l-k~~l~~~~~~l~~~~~~ 572 (609)
.+....++++| .+-.++.++.++..|+|
T Consensus 154 ~k~~e~~iQkltd~~i~~id~~~~~KEkE 182 (185)
T 1eh1_A 154 TKRAEAEIQKITDEFIAKADQLAEKKEQE 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555 33333333333333333
No 330
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=22.36 E-value=4e+02 Score=29.93 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=7.8
Q ss_pred HHhhhhHHHHHHHHHH
Q psy114 510 SQADSVGKEYDRLLKE 525 (609)
Q Consensus 510 kQa~sa~~~ak~~~~e 525 (609)
+.+++..+|...+|+.
T Consensus 600 r~s~~~~~a~~~L~~~ 615 (692)
T 2xcs_B 600 RESDTDKVAMESLQQR 615 (692)
T ss_dssp HTCSSHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHhhc
Confidence 3444444555555543
No 331
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=22.02 E-value=5.5e+02 Score=24.88 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q psy114 572 NSAALKNQADSV 583 (609)
Q Consensus 572 ~~~~lkkQ~~~l 583 (609)
.++.|...++.|
T Consensus 271 ~v~~l~~~a~~L 282 (326)
T 3kbt_A 271 QVQQFQDVATRL 282 (326)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 332
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=21.73 E-value=6.5e+02 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 572 NSAALKNQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 572 ~~~~lkkQ~~~l~~eydrl~~e~~~l~ 598 (609)
++..+||+-+.-+++||..+..|.++.
T Consensus 148 ~~ke~kK~Fek~~~~Yd~~l~Ky~~~~ 174 (407)
T 4h8s_A 148 EVSTLKDLFGLASNEHDLSMAKYSRLP 174 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455688889999999999988887654
No 333
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.59 E-value=4.2e+02 Score=23.35 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q psy114 554 RLKEKLSKTEEEL 566 (609)
Q Consensus 554 ~lk~~l~~~~~~l 566 (609)
++..||++++-.|
T Consensus 71 ~ie~ElE~LTasL 83 (135)
T 2e7s_A 71 KLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 334
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=21.56 E-value=4.2e+02 Score=23.42 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=10.6
Q ss_pred hhHHHHHHHHhhhhHHHHH
Q psy114 491 LSKTEEELKKEKTNSAALK 509 (609)
Q Consensus 491 l~~li~qla~~~~~~ea~~ 509 (609)
+...+.+|+.+...++..+
T Consensus 9 I~d~A~eL~~aI~eseeyk 27 (151)
T 2pih_A 9 IVQQARNLAKMISETEEVD 27 (151)
T ss_dssp HHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHHHcCHHHH
Confidence 3445556666665555544
No 335
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.56 E-value=1.4e+02 Score=22.37 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy114 578 NQADSVGKEYDRLLKEHEKVQ 598 (609)
Q Consensus 578 kQ~~~l~~eydrl~~e~~~l~ 598 (609)
..++.|..|.+.|..+.+.|+
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 336
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.43 E-value=7.1e+02 Score=25.98 Aligned_cols=111 Identities=9% Similarity=0.088 Sum_probs=52.3
Q ss_pred cCCCCCCCCC-ChhhHHHhhhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcCCCcc---hhhcc
Q psy114 471 EQCDKGLEGD-SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD---DKYQK 546 (609)
Q Consensus 471 ~~C~~~~~~~-~~~I~~i~~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~~l~~~~~~~~~~~~---~~~~~ 546 (609)
..|+ +.|. ...+...++.+.+=+++|.......+.+...++..-++-+....+.++ + ..+.. .+..+
T Consensus 17 ~~CP--T~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~--~-----~~d~~e~~tq~sk 87 (409)
T 1m1j_C 17 SYCP--TTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQ--T-----LPQSIEQLTQKSK 87 (409)
T ss_dssp CEEE--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTT--C-----CSSCHHHHHHHHH
T ss_pred CcCC--CcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--C-----CCCchhhHHHHHH
Confidence 3455 3452 335555555566666666666666666666555555444444322111 0 01110 12233
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy114 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590 (609)
Q Consensus 547 ~~~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl 590 (609)
++.+++.+|++.+...+..++..+..++.++++.+.|......|
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555555444444444444444444444455554444444
No 337
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.23 E-value=67 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy114 104 YISGFSLFLWLVIRQII 120 (609)
Q Consensus 104 YisGf~LfL~lvi~r~~ 120 (609)
=+.|.+||.+++|+|+.
T Consensus 22 GiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 22 GVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36689999999999974
No 338
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.89 E-value=3.3e+02 Score=22.61 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy114 575 ALKNQADSVGKEY 587 (609)
Q Consensus 575 ~lkkQ~~~l~~ey 587 (609)
-|..+.+.+.+.|
T Consensus 82 ~L~~eLe~F~~~y 94 (96)
T 1t3j_A 82 QLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 339
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=20.86 E-value=3.6e+02 Score=22.29 Aligned_cols=46 Identities=7% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy114 550 DEIKRLKEKLSKTEEELKKE-KTNSAALKNQADSVGKEYDRLLKEHE 595 (609)
Q Consensus 550 ~e~~~lk~~l~~~~~~l~~~-~~~~~~lkkQ~~~l~~eydrl~~e~~ 595 (609)
++.++++..+.+..+.|... ..+.+.++.+.+.|.+....+.....
T Consensus 37 eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~y 83 (113)
T 3lof_A 37 ADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLY 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666553 23578888888888888777766544
No 340
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=20.83 E-value=89 Score=29.10 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=27.7
Q ss_pred hhhHHHh-hhhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q psy114 482 DEIKRLK-EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527 (609)
Q Consensus 482 ~~I~~i~-~~l~~li~qla~~~~~~ea~~kQa~sa~~~ak~~~~e~~ 527 (609)
..|+..+ ..|.+|+.+.|. +.++++++-..++-+++|+|.-
T Consensus 7 ~kmt~~Rk~~Lk~lll~kA~-----e~L~~E~e~k~eeKkkiLaER~ 48 (182)
T 1ytz_I 7 RRAATARRQHLKSAMLQLAV-----TEIEKEAAAKEVEKQNYLAEHS 48 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhC
Confidence 3455444 345666666554 5588888888888899998873
No 341
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.78 E-value=3.3e+02 Score=23.39 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 551 EIKRLKEKLSKTEEEL 566 (609)
Q Consensus 551 e~~~lk~~l~~~~~~l 566 (609)
|+++|++++.++...|
T Consensus 19 e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 19 EIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 342
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.76 E-value=1.8e+02 Score=24.59 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEE 564 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~ 564 (609)
+.++++|+.++.+.+.
T Consensus 17 ~~ei~~L~~ei~eLk~ 32 (106)
T 4e61_A 17 QETIGSLNEEIEQYKG 32 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 343
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.70 E-value=91 Score=23.77 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy114 573 SAALKNQADSVGKEY 587 (609)
Q Consensus 573 ~~~lkkQ~~~l~~ey 587 (609)
+|..|++.-.+..+|
T Consensus 10 IE~kR~eL~~l~~k~ 24 (62)
T 2bzb_A 10 IENKKKELIQLVARH 24 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 333334444444444
No 344
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=20.62 E-value=2.3e+02 Score=28.36 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy114 552 IKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589 (609)
Q Consensus 552 ~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydr 589 (609)
++|++..+++...++.+++++....=...+....+|..
T Consensus 185 ~~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~ 222 (320)
T 3m3w_A 185 LRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYME 222 (320)
T ss_dssp CSSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444444444444554444444445555543
No 345
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=20.55 E-value=1.4e+02 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.306 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy114 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593 (609)
Q Consensus 549 ~~e~~~lk~~l~~~~~~l~~~~~~~~~lkkQ~~~l~~eydrl~~e 593 (609)
..+++|++..+++...++.+++++....=..++....+|.+.+.+
T Consensus 169 ~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~ 213 (290)
T 3i2w_A 169 PDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTS 213 (290)
T ss_dssp -------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445666666666666666777777665555566666666554433
No 346
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.51 E-value=43 Score=32.86 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=6.3
Q ss_pred HHhhhhhHHHHHHH
Q psy114 486 RLKEKLSKTEEELK 499 (609)
Q Consensus 486 ~i~~~l~~li~qla 499 (609)
++.+-|..||+=++
T Consensus 121 Rt~~iLSalINF~~ 134 (250)
T 2ve7_C 121 RTSRFLSGIINFIH 134 (250)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
Done!