RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy114
(609 letters)
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 121 bits (304), Expect = 5e-29
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 176 SYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGV 235
S S ++ + R L L + + P L + CAF E + V
Sbjct: 524 SISQCMSLEVHPNSISVSDHSRLLSLVVNDAPNLSEGIACAF---GNLTEVEGQVSGSQV 580
Query: 236 KCATPPTKDIPSIPVGQHNITAKLSVRSS-NGPDFVTTKFMFFDCNTYSSCTQCVSSDFP 294
C +P KD+P IP+ Q +L +RS G FV+T+F F++C+ + C CV+S F
Sbjct: 581 ICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFR 640
Query: 295 CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGP 332
C WC + CTHD C VS P
Sbjct: 641 CHWCKYRNLCTHDPTT-CSFQEGRINVSEDCPQGTKHH 677
Score = 52.8 bits (125), Expect = 3e-07
Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 25/209 (11%)
Query: 272 TKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRS 330
T+ C Y++C +C+SS P C WC + C+ + F +
Sbjct: 473 TRVPVESCEQYTTCGECLSSGDPHCGWC--ALHNMCSRRDKCQR-------AWEANRFAA 523
Query: 331 GPAFCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQ 390
+ C ++ + P+ + + ++ + + G T+V Q
Sbjct: 524 SISQCMSLE---------VHPNSISVSDHSRLLSLVVNDAPNLSEGIACAFGNLTEVEGQ 574
Query: 391 LLGDVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNI--YKCRDLANNCGL 448
+ G + C + + V Y C C
Sbjct: 575 VSGSQVICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQL-CLS 633
Query: 449 CLALPEKYGCGWCESSKRC-EIFEQCDKG 476
C+ + C WC+ C C
Sbjct: 634 CVNSA--FRCHWCKYRNLCTHDPTTCSFQ 660
Score = 30.0 bits (66), Expect = 2.8
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 4/181 (2%)
Query: 302 HRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKVK 361
C H N +L V FC +G + + + +
Sbjct: 341 QSCYHGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDINQPLGGSTPVEGLTLYTTSRDR 400
Query: 362 VHIVGQFIVQTRFVC-LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIW 420
+ V ++ V + G+ K+ A + S I +A
Sbjct: 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADG-PPHGGVQYEMVSVFKDGSPILRDMAFSI 459
Query: 421 GGSK-PLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEG 479
+ + V + + CG CL+ + + CGWC C ++C + E
Sbjct: 460 NQLYLYVMSERQVTRVPVESCEQYTTCGECLSSGDPH-CGWCALHNMCSRRDKCQRAWEA 518
Query: 480 D 480
+
Sbjct: 519 N 519
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 2e-11
Identities = 98/653 (15%), Positives = 194/653 (29%), Gaps = 185/653 (28%)
Query: 25 PILSTQRLHKILKSKFVQGVKTQAGWYFGCILV----ILSLFFLDAIREMRKYASPEVKE 80
ILS + + I+ SK + F +L ++ F + +R K+ +K
Sbjct: 44 SILSKEEIDHIIMSK---DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 81 EAHGHLDAEMQNNMKLFRAQRNFYISGFSLFL-WLVIR--QIIQLIAQQANLLAQNEAS- 136
E + +++ QR+ + +F + V R ++L + LL A
Sbjct: 101 E-----QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKN 152
Query: 137 -----MNQARQAAVAAQALLDGPRGKWFGSHV-WAYL----TPNLL----------VTRS 176
+ + + VA L + W L +P + + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 177 YSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLC-----------AFTIG-ETTV 224
+++R S + + I ++ L LL AF + + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 225 TTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSS 284
TT + T+ + AT T I +T +
Sbjct: 271 TTRFKQVTDFLSAAT--TTHISLDHH-SMTLTPDEVKS------------LL------LK 309
Query: 285 CTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIG 344
C D P E + +S + S R G A + +
Sbjct: 310 YLDCRPQDLP--------------REVLTTNPRR--LSIIAESIRDGLATWDNWKHVNC- 352
Query: 345 SQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRF---TKVNAQLL----GDVIY 397
+ ++ ++++ + F L + F + LL DVI
Sbjct: 353 -------DKLTTIIESSLNVLEPAEYRKMFDRLS-V---FPPSAHIPTILLSLIWFDVIK 401
Query: 398 CDPMEFTYNSSVSNINASLAVIWGGS-------------KPLDNPDNVH---VNIYKCRD 441
D M N SL L+N +H V+ Y
Sbjct: 402 SDVMVVV-NKLH---KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 442 LANNCGLCLALPEKYGCGW----------CESSKRCEIFEQC--DKGLEGDSDEIKRLKE 489
++ L ++Y + E +R +F D + L++
Sbjct: 458 TFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFLEQ 505
Query: 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDS 549
K ++ + T A S + L++ + + + + D KY++
Sbjct: 506 K-------IRHDSTAWNASGSILN--------TLQQLKFYKPYICDN----DPKYER--- 543
Query: 550 DEIKRLKEKLSKTEEELKKEKTNS---AALKNQADSVGKEYDRLLKEHEKVQK 599
+ + + L K EE L K AL + +++ +E H++VQ+
Sbjct: 544 -LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE------AHKQVQR 589
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 55.5 bits (134), Expect = 4e-08
Identities = 24/143 (16%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 465 KRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLK 524
+ E +++ GLE ++I +L+ K+ + +E K + + + E ++L
Sbjct: 914 RSVERYKKLHIGLE---NKIMQLQRKIDEQNKEYKSLL---EKMNNLEITYSTETEKLRS 967
Query: 525 EHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG 584
+ E+++ E + + + L+E+++K +EL + +T ++ AD
Sbjct: 968 DVERLRMSEEEAKNAT---------NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 585 KEYDRLLKEHEKVQKVVTEQGDK 607
E ++L+ E ++ ++ + ++
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEE 1041
Score = 48.6 bits (116), Expect = 5e-06
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
EKL E L+ + + ++ S+ +E +L KE + Q ++
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI-EEWA 1014
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTN-SAALKNQADSVGKEYDRLLKEHEK 596
DKY+ E ++L +L + LK EK + + +QA + + ++ L E K
Sbjct: 1015 DKYKH----ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066
Score = 45.9 bits (109), Expect = 4e-05
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 16/138 (11%)
Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
+ + ++ QC E+K+LK + +++ K L+++ + R
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIE----ARSVERYKKLHIGLENKI----MQLQR 935
Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
+ E K K + E+ + + EKL E L+ + + N+
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEI--------TYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 582 SVGKEYDRLLKEHEKVQK 599
S+ +E +L KE + Q
Sbjct: 988 SLQEEIAKLRKELHQTQT 1005
Score = 45.5 bits (108), Expect = 5e-05
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
+EI +L+++L +T+ E K + + K + + + L +++ ++ E +
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRIH 1047
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEK 570
D+ ++ K+L E+ + E +L E+
Sbjct: 1048 DQAKEITETMEKKLVEETKQLELDLNDER 1076
Score = 38.6 bits (90), Expect = 0.007
Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
+ K L E K ++E K + E ++ + ++ L E E++
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLV----------SELKEQNTLLKTEKEELN 1043
Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569
+ + +Q + + +K +E K+L+ L+ +E L+ +
Sbjct: 1044 RRIHDQAKEITETMEKKLVEETKQLELDLN--DERLRYQ 1080
Score = 37.8 bits (88), Expect = 0.011
Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 463 SSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVG----KE 518
+R + + + + + ++ L + + ++ Q G
Sbjct: 824 KFQRMYVVRKRYQCMRDATIALQALLRGY-LVRNKYQMMLREHKSIIIQKHVRGWLARVH 882
Query: 519 YDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578
Y R LK +Q K++ K K ++ ++R K+ E ++ + L+
Sbjct: 883 YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ-------LQR 935
Query: 579 QADSVGKEYDRLLKEHEKVQKVVTEQGDK 607
+ D KEY LL++ ++ + + +K
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEK 964
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 54.5 bits (131), Expect = 9e-08
Identities = 23/140 (16%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529
E LE + ++ +++L K + +L+ E ++ ++ + E L + E+
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 530 QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589
+ + + + + +I+ L+ +S +E+L+ EK + Q + +E +
Sbjct: 1097 LQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 590 LLKEHEKVQKVVTEQGDKKD 609
L E E Q + +
Sbjct: 1156 LKTELEDTLDTTATQQELRG 1175
Score = 44.4 bits (105), Expect = 1e-04
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ---KVVTEQGDKK 540
I+ +E+ + + E KK + L+ Q + +L E K + +
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600
+D+ K + E K L+E++S L +E+ + L + L +K +K
Sbjct: 996 EDQNNK-LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 601 VTE 603
E
Sbjct: 1055 RQE 1057
Score = 41.4 bits (97), Expect = 8e-04
Identities = 22/146 (15%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
E + E ++ + + E+K L++K ++ EE + A + R
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
L + +++++++ E + ++ ++ S +++ K+K+ + +L+++ A + +
Sbjct: 918 LAAKKQELEEILHEMEARIEE--EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 582 SVGKEYDRLLKEHEKVQKVVTEQGDK 607
D +K+ E ++ +Q +K
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 37.5 bits (87), Expect = 0.013
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
+I+ L+ +S +E+L+ EK + Q + +E + L E E Q + +
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Query: 543 KYQ 545
Y+
Sbjct: 1177 DYK 1179
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 49.3 bits (117), Expect = 1e-06
Identities = 17/128 (13%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
DE+ L++KL TE+EL K + + + K+ + + + + ++ D
Sbjct: 41 DELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD 100
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
+ + +KL + E+ + + ++++A ++ + + ++ + +
Sbjct: 101 RA-----QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155
Query: 602 TEQGDKKD 609
+ K +
Sbjct: 156 EDADRKYE 163
Score = 45.4 bits (107), Expect = 2e-05
Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQ 536
E E K + E + EE+ ++ + +A+ + + E E+ K VT
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNN 203
Query: 537 GDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596
+ + +K S + + +E++ ++LK+ +T + + + K D L E
Sbjct: 204 LKSLEAQAEKY-SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 262
Query: 597 VQKVVTEQGDKKD 609
+ ++ D
Sbjct: 263 QKLKYKAISEELD 275
Score = 42.7 bits (100), Expect = 2e-04
Identities = 18/139 (12%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 461 CESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYD 520
++R ++FE+ + + E+ K +E ++ ++S+A ++ +
Sbjct: 86 ASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM---KVIESRAQKDEEKME 142
Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
+ ++ + + + K ++ + ++ ++ L + EE + + A L+ +
Sbjct: 143 IQEIQLKEAKHIAEDADRKYEEV-----ARKLVIIESDLERAEERAELSEGKCAELEEEI 197
Query: 581 DSVGKEYDRLLKEHEKVQK 599
+V L + EK +
Sbjct: 198 KTVTNNLKSLEAQAEKYSQ 216
Score = 40.0 bits (93), Expect = 0.001
Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
I E D+ E + ++ ++ L + EE + + A L+ + +V L + E
Sbjct: 153 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAE 212
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEE---ELKKEKTNSAALKNQADSVG 584
K + K+DKY++ +LKE ++ E + K + + L+++ +
Sbjct: 213 KYSQ--------KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 264
Query: 585 KEYDRLLKEHEKVQKVVTE 603
+Y + +E + +T
Sbjct: 265 LKYKAISEELDHALNDMTS 283
Score = 36.9 bits (85), Expect = 0.014
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGD 548
+ + K + LK +K N+ +A++ K + K+ E + ++ +D+ K
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDK-Y 60
Query: 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 608
S+ +K +EKL E++ + + A+L + +E DR + + + E
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 609 D 609
D
Sbjct: 121 D 121
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 46.3 bits (109), Expect = 1e-05
Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 21/144 (14%)
Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSV----------------GKEYD 520
L+ ++ + + + EEE K + + +E
Sbjct: 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR 93
Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
L E + ++ + + ++ +EIKR EK ++E+ + + + L++
Sbjct: 94 SLNIEEDIAKERSNQANREIENLQ-----NEIKRKSEKQEDLKKEMLELEKLALELESLV 148
Query: 581 DSVGKEYDRLLKEHEKVQKVVTEQ 604
++ K + K ++ + E+
Sbjct: 149 ENEVKNIKETQQIIFKKKEDLVEK 172
Score = 42.0 bits (98), Expect = 3e-04
Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVG--KEYDRLLKEHE 527
E +K + +E LK ++SK E+ L+ A+++ + + +E L E +
Sbjct: 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEED 100
Query: 528 KVQKVVTEQGDKKDDKYQKGDS--DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGK 585
++ + + ++ + ++ + LK+++ + E+ + ++ +
Sbjct: 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160
Query: 586 E-------------------YDRLLK 592
Y+R+ +
Sbjct: 161 IIFKKKEDLVEKTEPKIYSFYERIRR 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 73/497 (14%), Positives = 147/497 (29%), Gaps = 172/497 (34%)
Query: 7 LIATVL-YFEMAFM-------LLLILPILSTQRLHKILKSKFVQGVKTQAGWYFGCILVI 58
++ L FE ++ L L + ++K+K + +K Y
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDT---TLVKTKEL--IKN----YI------ 127
Query: 59 LSLFFLDAIREMRKYASPEVKEEAHGHLDAEMQNNMKLFRAQ--------------RNFY 104
A ++ P K+ A + N +L A R+ Y
Sbjct: 128 ------TARIMAKR---PFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYFEELRDLY 177
Query: 105 ISGFSLFLWLVIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSHVW 164
+ L + +I+ A+ + L + + + L+ P
Sbjct: 178 QTYHVL-----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS--------- 223
Query: 165 AYLTPNLLVTRSYSTRVARSFSAQNGISDL-----KPRTLDLAIENLPELPGQLL----C 215
TP+ + Y + S G+ L + L PG+L
Sbjct: 224 --NTPD----KDYLLSIPISCPL-IGVIQLAHYVVTAKLLGFT-------PGELRSYLKG 269
Query: 216 AFTIGETTVTTEAIKQTN-------------------GVKC--ATPPTKDIP------SI 248
A + VT AI +T+ GV+C A P T +P S+
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSILEDSL 328
Query: 249 PVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVS-SDFPCDWCVDGHRCTHD 307
+ + LS+ + N++ + V S
Sbjct: 329 ENNEGVPSPMLSIS---NLTQEQVQDYVNKTNSHLPAGKQVEISLV-------------- 371
Query: 308 TAENCRNDILITGVSRVGPSFRSGPAFCPTIRGTDIGSQEILVPSGVKKAVKV-----KV 362
N +++++ GP +S T+R + PSG+ ++ ++ K+
Sbjct: 372 ---NGAKNLVVS-----GPP-QSLYGLNLTLR-------KAKAPSGLDQS-RIPFSERKL 414
Query: 363 HIVGQFI-VQTRFVCLFNIEGRFTKVNAQLLGDVIYCD------PMEFTYN-----SSVS 410
+F+ V + F + +N L+ + + + P+ T++
Sbjct: 415 KFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 411 NINASLA-------VIW 420
+I+ + V W
Sbjct: 474 SISERIVDCIIRLPVKW 490
Score = 33.1 bits (75), Expect = 0.35
Identities = 36/236 (15%), Positives = 60/236 (25%), Gaps = 98/236 (41%)
Query: 401 MEFTYNSSVSNINASLAVIW-----------GGSKP---LDNPDN--VHVNIYKCRDLAN 444
M+ Y +S + +W G S ++NP N +H K + +
Sbjct: 1633 MDL-YKTS-----KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 445 NCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKT-----EEELK 499
N Y IFE G K + E + + L
Sbjct: 1687 N----------YSAM---------IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 500 KEKTN---------SAA----LKS----QAD------SVGKEY-------------D--R 521
T A LKS AD S+G EY
Sbjct: 1728 --ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYAALASLADVMSIESLVE 1784
Query: 522 LLKEHEKVQKVVTEQGDKKDDKY-----------QKGDSDEIKRLKEKLSKTEEEL 566
++ +V + + Y + ++ + E++ K L
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 43.3 bits (102), Expect = 2e-05
Identities = 21/118 (17%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
E+ +KE+ ++ +E L+K + L+ + S+ +E + L + + Q + + ++ D
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 542 D-KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598
K L+ K+ + + L+ E+ +A L + + E L ++ + ++
Sbjct: 73 QLIKNKIQ------LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124
Score = 36.4 bits (84), Expect = 0.005
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
E + E F + + LE K L+EK+ +E + A + + D+
Sbjct: 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQ 73
Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569
L+K +++ V E + +D+ + + E+ K KL ELK++
Sbjct: 74 LIKNKIQLEAKVKEMNKRLEDEEEM--NAELTAKKRKLEDECSELKRD 119
Score = 33.7 bits (77), Expect = 0.050
Identities = 12/60 (20%), Positives = 31/60 (51%)
Query: 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
E+ +KE+ ++ +E L+K + L+ + S+ +E + L + + Q + + ++ D
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 45.4 bits (106), Expect = 4e-05
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 266 GPDFVTTKFMFFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSRV 324
+ +CN + SC++C+++ P C WC RCT +C +
Sbjct: 408 TAGKEVRRIRVANCNKHKSCSECLTATDPHCGWCHSLQRCT--FQGDCVHS----ENLEN 461
Query: 325 GPSFRSGPAFCPT 337
SG CP
Sbjct: 462 WLDISSGAKKCPG 474
Score = 37.3 bits (85), Expect = 0.015
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 433 HVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
+ + C + +C CL + + CGWC S +RC C
Sbjct: 415 RIRVANC-NKHKSCSECLTATDPH-CGWCHSLQRCTFQGDCVHS 456
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.1 bits (98), Expect = 2e-04
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 24/90 (26%)
Query: 518 EYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577
+ DRL +E E ++K EQ KRL+E + K + +
Sbjct: 76 QADRLTQEPESIRKWREEQR---------------KRLQEL----DAASKVME---QEWR 113
Query: 578 NQADSVGKEYDRLLKEHEKVQKVVTEQGDK 607
+A +E+++ ++ E+V+K
Sbjct: 114 EKAKKDLEEWNQ--RQSEQVEKNKINNRIA 141
Score = 41.7 bits (97), Expect = 2e-04
Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 477 LEGDSDEIKRLKEK----LSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKV 532
L + + I++ +E+ L + + K + + +A +E+++ ++ E+V+K
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVME---QEWREKAKKDLEEWNQ--RQSEQVEKN 134
Query: 533 VTEQGDKKDDKYQKGDSDEI 552
YQ+ D+D I
Sbjct: 135 KINNRIADKAFYQQPDADII 154
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 43.1 bits (100), Expect = 2e-04
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 276 FFDCNTYSSCTQCVSSDFP-CDWCVDGHRCTHDTAENCRN 314
C Y++C +C+SS P C WC + C+ + C+
Sbjct: 478 VESCEQYTTCGECLSSGDPHCGWCALHNMCSR--RDKCQR 515
Score = 38.1 bits (87), Expect = 0.009
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDS 481
V + C + CG CL+ + + CGWC C ++C + E +
Sbjct: 474 TRVPVESC-EQYTTCGECLSSGDPH-CGWCALHNMCSRRDKCQRAWEANR 521
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 40.9 bits (95), Expect = 3e-04
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQK 546
+ + +S+ E ++ + + L++ K+Y +L E ++ + D +
Sbjct: 39 MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR 98
Query: 547 GDS--DEIKRLKEKLSKTEEE----------LKKEKTN-SAALKNQADSVGKEYDRLLKE 593
S +E+K LK L K E E +KEK N L + S+ + ++ + E
Sbjct: 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE 158
Query: 594 HEKVQKVVTE 603
H+ + +T+
Sbjct: 159 HKVTKARLTD 168
Score = 35.5 bits (81), Expect = 0.021
Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
E + DS+ I L+ +++ +EE+K K N ++ + + KE ++
Sbjct: 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138
Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLS 560
+ + + ++ + +E K K +L+
Sbjct: 139 IDLNYKLKSLQQRLEQ-EVNEHKVTKARLT 167
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.1 bits (99), Expect = 4e-04
Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 4/146 (2%)
Query: 463 SSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL 522
S++ E + G++ +++ E + + E+ L++ + + + KE L
Sbjct: 145 PSEKLETVAKL-LGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNL 203
Query: 523 LKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADS 582
KE EK+ K + G + L+EK ++ E + L
Sbjct: 204 EKEKEKLTK---FVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVE 260
Query: 583 VGKEYDRLLKEHEKVQKVVTEQGDKK 608
+ K+++ + V + G ++
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQ 286
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 42.3 bits (98), Expect = 4e-04
Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 21/176 (11%)
Query: 323 RVGPSFRSGPAFCPTIRGTD--------------IGSQEILVPSGVKKAVKVKVHIVGQF 368
R G F P+FCP G + + S V V+V +
Sbjct: 354 RRGLDFFQSPSFCPNPPGLEALSPNTSCRHFPLLVSSSFSRVDLFNGLLGPVQVTALYVT 413
Query: 369 IVQTRFVC-LFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVSNINASLAVIWGGS--KP 425
+ V + ++GR +V + + F+ S + ++ +
Sbjct: 414 RLDNVTVAHMGTMDGRILQVELVRSLNYLLY-VSNFSLGDSGQPVQRDVSRLGDHLLFAS 472
Query: 426 LDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKGLEGDS 481
D V + C CG CL GCGWC + C ++C + D
Sbjct: 473 GDQVFQVPIQGPGC-RHFLTCGRCLRAWHFMGCGWCGN--MCGQQKECPGSWQQDH 525
Score = 41.6 bits (96), Expect = 7e-04
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 258 KLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSS--DFPCDWCVDGHRCTHDTAENCRN 314
L S + V + C + +C +C+ + C WC G+ C + C
Sbjct: 467 HLLFASGDQVFQVPIQGP--GCRHFLTCGRCLRAWHFMGCGWC--GNMCGQ--QKECPG 519
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling
protein; HET: NAG BMA; 2.99A {Homo sapiens}
Length = 528
Score = 41.6 bits (96), Expect = 6e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 278 DCNTYSSCTQCVSSDFP-CDWCVDGHRCTH 306
C + C C++ P C WCV RC+
Sbjct: 465 SCAQHLDCASCLAHRDPYCGWCVLLGRCSR 494
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 351 PSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLGDVIYCDPMEFTYNSSVS 410
P +++ V T L + +G+ +V D S+VS
Sbjct: 380 PILEWPGIQLTAVAVTMEDGHT-IAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVS 438
Query: 411 NINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIF 470
+ + + + + V + C +C CLA + Y CGWC RC
Sbjct: 439 R-DLTFDGTFEHLYVMTQSTLLKVPVASC-AQHLDCASCLAHRDPY-CGWCVLLGRCSRR 495
Query: 471 EQCDKG 476
+C +G
Sbjct: 496 SECSRG 501
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 40.6 bits (94), Expect = 8e-04
Identities = 23/127 (18%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 478 EGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
E E+K LKE +++KK+ L+++ + R + +++ E
Sbjct: 119 EKQIAELKALKESSESNIKDIKKK------LEAKRLDRIQVMMRSTSDKAAQERLKKE-- 170
Query: 538 DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597
++ + + IK L EK ++ +++L+++ + L+ + G+ + E+E+
Sbjct: 171 --INNSHIQEVVQTIKLLTEKTARYQQKLEEK--QAENLRAIQEKEGQLQQEAVAEYEEK 226
Query: 598 QKVVTEQ 604
K +T +
Sbjct: 227 LKTLTVE 233
Score = 35.9 bits (82), Expect = 0.028
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEK-------------- 528
E+K L+ K SK EEL ++ + + + L + E
Sbjct: 40 ELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIR 99
Query: 529 --VQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK--EKTNSAALKNQADSV- 583
++ TEQ K + ++ E+K LKE +++KK E ++ S
Sbjct: 100 RRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTS 159
Query: 584 -GKEYDRLLKEHEK--VQKVVTE 603
+RL KE +Q+VV
Sbjct: 160 DKAAQERLKKEINNSHIQEVVQT 182
Score = 34.4 bits (78), Expect = 0.085
Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 478 EGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
+G+ E+ +L E + + EL++ K + +LLK+ EK K + +G
Sbjct: 4 DGNMKEVTQLPEPQTASLAELQQMKL---------------FLKLLKKQEKELKELERKG 48
Query: 538 DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597
K+ ++ + S + ++ ++ L + + R ++H
Sbjct: 49 SKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATE 108
Query: 598 QK 599
Q
Sbjct: 109 QT 110
Score = 32.5 bits (73), Expect = 0.30
Identities = 12/107 (11%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 464 SKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLL 523
+KR + + + + + + KE + +E+ + K + + +L
Sbjct: 145 AKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTI------KLLTEKTARYQQKLE 198
Query: 524 KEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEK 570
++ + + + E+ + + +++K L ++ + + KE
Sbjct: 199 EKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKNYMKEV 245
Score = 32.1 bits (72), Expect = 0.43
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 15/163 (9%)
Query: 460 WCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAA--LKSQADSVGK 517
E ++ + G ++ LKE+L L +E + + A
Sbjct: 52 REELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTA 111
Query: 518 EYDRLLKEHEKVQKVVTEQGDKKDDK-----YQKGDSDEIKRLKE--KLSKTEEELKKEK 570
+ L +E + + ++ + + K + D I+ + +E LKKE
Sbjct: 112 KITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEI 171
Query: 571 TNS------AALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDK 607
NS +K + + +L ++ + + + E+ +
Sbjct: 172 NNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQ 214
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 40.1 bits (93), Expect = 0.002
Identities = 18/124 (14%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 465 KRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLK 524
+ ++ + + +SD +K KE K EE + + + + G +++ +L
Sbjct: 667 SKKDLIQMLVQ-RGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILN 725
Query: 525 ------EHEKVQKVVTEQGDKKD--DKYQKGD-----SDEIKRLKEKLSKTEEELKKEKT 571
EKV++++ ++ K + ++ +++ E+L K E + +++
Sbjct: 726 MSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDGA 785
Query: 572 NSAA 575
+
Sbjct: 786 PGFS 789
Score = 32.0 bits (72), Expect = 0.66
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD-- 542
R + + E K L +QA R + E K+Q +T + K D
Sbjct: 630 LRKEWLVGMLGAESTK-------LNNQA--------RFILE--KIQGKITIENRSKKDLI 672
Query: 543 ---KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK------E 593
+ +SD +K KE K EE + + + + + G +++ +L
Sbjct: 673 QMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLT 732
Query: 594 HEKVQKVVTEQGDKKD 609
EKV++++ ++ K
Sbjct: 733 KEKVEELIKQRDAKGR 748
Score = 30.1 bits (67), Expect = 2.6
Identities = 15/125 (12%), Positives = 40/125 (32%), Gaps = 9/125 (7%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
+I + L + S +K+ ++ K + +++
Sbjct: 658 QGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSG 717
Query: 541 DD-KY------QKGDSDEIKRLKEKLSKTEEELK--KEKTNSAALKNQADSVGKEYDRLL 591
D Y ++++ L ++ E+ K K+ S K + +E D++
Sbjct: 718 PDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVE 777
Query: 592 KEHEK 596
+ +
Sbjct: 778 SQERE 782
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 39.2 bits (90), Expect = 0.004
Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 477 LEGDSDEIKRLKEKLSKTEEELK-KEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE 535
E K L E K E+ ++ KE++ LK + + + +LLKE E+
Sbjct: 496 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA---L 552
Query: 536 QGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNS 573
+ +++ ++G E + +K ++ + ++++ K +
Sbjct: 553 KLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
Score = 38.0 bits (87), Expect = 0.010
Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 12/150 (8%)
Query: 462 ESSKRC-----EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVG 516
SS RC IF ++ ++ + ++LKK+ QA+ +
Sbjct: 402 ASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 461
Query: 517 KEYDRLLKEHE----KVQKVVTEQGDKKDDKYQKGDS--DEIKRLKEKLSKTEEELK-KE 569
+ Y + + + + +TE+ + + + K +S K L E K E+ ++ KE
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 521
Query: 570 KTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
++ LK + + + +LLKE E+
Sbjct: 522 RSYQEHLKQLTEKMENDRVQLLKEQERTLA 551
Score = 32.2 bits (72), Expect = 0.59
Identities = 24/130 (18%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 465 KRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSV---GKEYDR 521
+ EI + K E +D I + + L++ E+E++ E+ + + ++ A + ++ ++
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKR-----LKEKLSKTEEELKKEKTNSAAL 576
++++ E+ + +Q +K + + E +R L+E+ +E +KE S +
Sbjct: 516 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE---SRIM 572
Query: 577 KNQADSVGKE 586
KN+ + +
Sbjct: 573 KNEIQDLQTK 582
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 39.0 bits (90), Expect = 0.004
Identities = 17/111 (15%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 473 CDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYD--RLLKEHEKVQ 530
+K + +I KE+L+ +LK K ++ +K E + + E++
Sbjct: 466 FEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLM 525
Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT---EEELKKEKTNSAALKN 578
K+ + D++++K + ++ L +++ + + EK + +
Sbjct: 526 KLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQRE 576
Score = 35.5 bits (81), Expect = 0.057
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
++LKE + E K + + A ++ A L K + K
Sbjct: 426 QQLKELTAPDENIPAKILSYNRANRAVA--------ILCNHQRAPPKTFEKSMMNLQTK- 476
Query: 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD--RLLKEHEKVQKVVT 602
I KE+L+ +LK K ++ +K+ E + + E++ K+
Sbjct: 477 -------IDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 529
Query: 603 EQGDKKD 609
+ D+++
Sbjct: 530 QATDREE 536
>3oky_B Putative uncharacterized protein; transmembrane, ligand,
SEMA-domain, cell-CELL signalling, SI protein; HET: NAG;
2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Length = 565
Score = 39.0 bits (89), Expect = 0.005
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 432 VHVNIYKCRDLANNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
+ V + +C C+A + Y CGW S C +
Sbjct: 493 IKVPLGRCERHGKCKKTCIASRDPY-CGWVRESGSCAHLSPLSRL 536
Score = 38.2 bits (87), Expect = 0.008
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 4/60 (6%)
Query: 266 GPDFVTTKFMFFDCNTYSS-CTQCVSSDFP-CDWCVDGHRCTHDTAENCRNDILITGVSR 323
K C + C++S P C W + C H + R
Sbjct: 487 AFSTCVIKVPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAH--LSPLSRLTFEQDIER 544
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 36.9 bits (85), Expect = 0.005
Identities = 19/117 (16%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
+ L+ ++++ ++ L++ + + + ++ + +E + + + K + E+ +K+D
Sbjct: 15 KNYHLENEVARLKKLLERAEERAELSEGKSAELEEEL-KTVTNNLKSLEAQAEKYSQKED 73
Query: 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
KY+ +EIK L +KL + E + + + L+ D + E +++ + +
Sbjct: 74 KYE----EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE 126
Score = 36.1 bits (83), Expect = 0.011
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 8/131 (6%)
Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
+ +R E+ E LE +E+K + L E + +K + + + +
Sbjct: 32 RAEERAELSEGKSAELE---EELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 88
Query: 522 LLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
E ++ VT+ DD DE+ K K EE+K+ + L ++
Sbjct: 89 AETRAEFAERSVTKLEKSIDDL-----EDELYAQKLKYKAISEEMKQLEDKVEELLSKNY 143
Query: 582 SVGKEYDRLLK 592
+ E RL K
Sbjct: 144 HLENEVARLKK 154
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 36.2 bits (83), Expect = 0.008
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
+D+ + K+ +++ + LK + + + + KE ++++
Sbjct: 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS--------- 117
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEK 570
EI + ++ + K E EL K
Sbjct: 118 ----------EINKYQKNIVKLETELNDSK 137
Score = 31.2 bits (70), Expect = 0.39
Identities = 6/51 (11%), Positives = 23/51 (45%)
Query: 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
+D+ + K+ +++ + LK++ + + + KE ++++
Sbjct: 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 36.6 bits (83), Expect = 0.010
Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 5/131 (3%)
Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE-K 528
++ +K ++ ++ +EKL + E E K K + Q + + K
Sbjct: 18 VDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMK 77
Query: 529 VQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYD 588
V ++++ + + ++L + E EL K + + +E+
Sbjct: 78 AYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHK----EEWM 133
Query: 589 RLLKEHEKVQK 599
+ + E Q+
Sbjct: 134 KEALKEEARQE 144
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A
{Homo sapiens}
Length = 273
Score = 37.0 bits (85), Expect = 0.012
Identities = 21/130 (16%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 481 SDEIKRLKEKLSKTEEELKKE-KTNSAALKSQADSVGKEYDRLLKEH-EKVQKVVTEQGD 538
D ++ L+++L ++L+ + T + L+ Q + +R+L+E+ + +Q + D
Sbjct: 43 GDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHAD 102
Query: 539 KKDDKYQKGDSDEIKRLKEKLSKTEEELKKE-KTNSAALKNQADSVGKEY-DRLLKEHEK 596
+ K + ++ LK +L+ +E K + L+ ++ ++L + E
Sbjct: 103 ELKAKIDQ----NVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEG 158
Query: 597 VQKVVTEQGD 606
+ + + +
Sbjct: 159 LTFQMKKNAE 168
Score = 30.1 bits (67), Expect = 2.1
Identities = 16/104 (15%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 481 SDEIKRLKEKLSKTEEELKKE-KTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
S + L+++L+ E+++ + N+ L+ +G D+ ++E + + E
Sbjct: 175 SASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGEN--- 231
Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA-ALKNQADS 582
+ K ++++L++KL +++ + L+++ +S
Sbjct: 232 ----FNKALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLRDKVNS 271
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.013
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 488 KEKLSKTEEELKKEKTNSA---ALKSQAD 513
K+ L K + LK +SA A+K+ +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 34.9 bits (79), Expect = 0.027
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 556 KEKLSKTEEELKKEKTNSA-ALKNQA 580
K+ L K + LK +SA AL +A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 36.3 bits (83), Expect = 0.017
Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 483 EIKRLKEKLSKTEEELKKE-KTNSAALKSQADSVGKEYDRLLKEH-----EKVQKVVTEQ 536
+++ +K K+ ++ +K+ + + + + + E ++ EK+ + E
Sbjct: 89 DLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEM 148
Query: 537 GDKKD---DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSA-ALKNQADSVGKEYDRLLK 592
D+ D + + L+++L+ E LK+ +A K
Sbjct: 149 RDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAK 208
Query: 593 EH-EKVQKVVTEQGDK 607
E +++ + +
Sbjct: 209 PALEDLRQGLLPVLES 224
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 36.6 bits (84), Expect = 0.017
Identities = 14/141 (9%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
+ + L + + + ++ + + LK + S+ + DRL
Sbjct: 150 HEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRL---RR 206
Query: 528 KVQKVVTEQGDKKDDKYQKG---------DSDEIKRLKEKLSKTEEELKKEKTNSAALKN 578
+ + + + ++ + E++ +E+L E +++K L+
Sbjct: 207 VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEI 266
Query: 579 QADSVGKEYDRLLKEHEKVQK 599
+ + E +
Sbjct: 267 AHEKLRHAESVGDGERVSRSR 287
Score = 31.6 bits (71), Expect = 0.78
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
E++ +E+L E +++K L+ ++ + V + +
Sbjct: 237 DKELEAFREELKHFEAKIEKHNHYQKQLEIAH-----------EKLRHAESVGDGERVSR 285
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ K L + K ++L
Sbjct: 286 SREKHALLEGRTKELGYTVKKHLQDLSG 313
Score = 29.7 bits (66), Expect = 2.5
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQ 545
L + + T++EL+ + K ++ +++H QK + +K
Sbjct: 228 DLAQSANLTDKELEAFREEL-----------KHFEAKIEKHNHYQKQLEIAHEKLRHAES 276
Query: 546 KGDSDEIKRLKEKLSKTEEELKK 568
GD + + R +EK + E K+
Sbjct: 277 VGDGERVSRSREKHALLEGRTKE 299
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 36.3 bits (83), Expect = 0.021
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 1/115 (0%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
K L+ SK EL ++ ++ V E +R+ H K++ + + + +
Sbjct: 43 KSLR-TWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTW 101
Query: 545 QKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
QK + ++ E+ KK + A L + + +Y K
Sbjct: 102 QKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATN 156
Score = 33.6 bits (76), Expect = 0.15
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529
+ K +++ + S + +++KK K Q ++Y++ + E K
Sbjct: 144 YHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKY 203
Query: 530 QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDR 589
V E +K Q + ++ KE L L + T +L + +
Sbjct: 204 NSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCL--DLTKVQSLPQIYEEFSHTINN 261
Query: 590 L 590
Sbjct: 262 A 262
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 36.7 bits (86), Expect = 0.022
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529
+ + L E+ L +K+ + ++ ++ AL+S+ + + KE +L +E +
Sbjct: 11 PDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT 70
Query: 530 QKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
++ + K +EI RL+E+L K EEELK
Sbjct: 71 TEIQNRVKELK---------EEIDRLEEELRKVEEELKN 100
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 36.3 bits (82), Expect = 0.028
Identities = 17/99 (17%), Positives = 39/99 (39%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
+ K + K S E+LKK + K ++Y++ LKE +
Sbjct: 157 KAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELD 216
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEEL 566
+ E ++ ++ Q+ + ++ +E L + ++ L
Sbjct: 217 QGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 255
Score = 34.0 bits (76), Expect = 0.13
Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
++L + ++ +L ++ ++ + E +R+ + H +V+ + +K +
Sbjct: 57 QQLT-EWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNW 115
Query: 545 QKGDSDEIKRLKEKLSKT-EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
QK + K +K E+ +K + A + ++ K + KE +
Sbjct: 116 QKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 171
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 35.1 bits (80), Expect = 0.029
Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 18/128 (14%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
+E KE K ++ ++ + + + + E + L + E+ + + +
Sbjct: 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLK 69
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
E++ LKEKL + K+ + + + + E++ K V
Sbjct: 70 --------YEVEALKEKLEHQYAQSYKQVS----------VLEDDLSQTRAIKEQLHKYV 111
Query: 602 TEQGDKKD 609
E D
Sbjct: 112 RELEQAND 119
Score = 30.1 bits (67), Expect = 1.4
Identities = 10/89 (11%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
++L + + + E+ + A + + ++ ++ + ++ + E+ +
Sbjct: 102 AIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEK-ESLL 160
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEK 570
Q+ DE + L+++L+ E + + +
Sbjct: 161 VSVQR-LKDEARDLRQELAVRERQQEVTR 188
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 34.5 bits (78), Expect = 0.031
Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 490 KLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDS 549
L EE+L K A+ K+ + Y++L +++ +++ ++++ D+ +
Sbjct: 2 PLGSLEEQLNKSLKTIASQKAAI----ENYNQLKEDYNTLKRELSDRDDEVKRLRED--I 55
Query: 550 DEIKRLKEKLSKTEEELKKEKTN-SAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 608
+ L+ K + ++L KE + +A+L ++A+++ + E + K +TEQ +K
Sbjct: 56 AKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREK 115
Query: 609 D 609
D
Sbjct: 116 D 116
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 35.2 bits (80), Expect = 0.051
Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
++L + ++ +L ++ ++ + E +R+ + H +V+ + +K +
Sbjct: 64 QQLT-EWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNW 122
Query: 545 QKGDSDEIKRLKEKLSKT-EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
QK + K +K E+ +K + A + ++ K + KE +
Sbjct: 123 QKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 178
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 35.3 bits (81), Expect = 0.054
Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 17/147 (11%)
Query: 454 EKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQAD 513
E YG ES K+ + E D + + + +EL+ E+ N D
Sbjct: 63 ESYG----ESVKQ-AVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYND 117
Query: 514 SVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTN- 572
+ +++ + L E+V + + + + + + L + ++ + L +E
Sbjct: 118 KIKEKFGKEL---EEVYNFMNGEANAEIED-----EKQFDILNKAVTSYNKILTEEDLQM 169
Query: 573 ---SAALKNQADSVGKEYDRLLKEHEK 596
+ AL+ + ++KE+
Sbjct: 170 RRLATALQKEIGERTHAETVMVKEYRD 196
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 33.7 bits (76), Expect = 0.059
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQK 546
+L +++ L+ AL+ +A + ++ +L E E +Q+ + Q D+ + Q
Sbjct: 7 SLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQ- 65
Query: 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
++ L + +EK A L+ + +EYD +K +
Sbjct: 66 -------SVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSE 111
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 34.3 bits (78), Expect = 0.088
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
L + + ++E K + ++ + K+ E ++ +
Sbjct: 94 VRVCLELTKYSQEMKQERKM-------HFQEGRRAQQQLENGFKQLENSKRKFERDCREA 146
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
+ Q + RL + ++ T+ +++K K + + A+ EY L+ + Q
Sbjct: 147 EKAAQTAE-----RLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQA 200
Score = 32.0 bits (72), Expect = 0.51
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 470 FEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV 529
FE+ + E + +RL + ++ T+ +++K K + A+ EY L+ +
Sbjct: 139 FERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRD 198
Query: 530 QKVVTEQGDKKD-DKYQKGDSDEIKRLKEKLSK 561
Q + DK Q D RL
Sbjct: 199 QAHFYFSQMPQIFDKLQDMDERRATRLGAGYGL 231
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 34.9 bits (81), Expect = 0.090
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
DEI+++ E +K ++Q D + + +K V E GDK
Sbjct: 510 DEIQKMVRDAEANAEADRKFD-ELVQTRNQGDHL--LHS--------TRKQVEEAGDKLP 558
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTN 572
+ + L+ L ++ + K
Sbjct: 559 ADDKTAIESALTALETALKGEDKAAIEAKMQ 589
Score = 30.3 bits (69), Expect = 2.3
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH-EKV 597
DEI+++ E +K +NQ D + + ++E +K+
Sbjct: 510 DEIQKMVRDAEANAEADRKFD-ELVQTRNQGDHLLHSTRKQVEEAGDKL 557
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A
{Saccharomyces cerevisiae} PDB: 3onx_A
Length = 141
Score = 33.0 bits (75), Expect = 0.097
Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 26/149 (17%)
Query: 463 SSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKE--KTNSAALKSQADSVGKEYD 520
SS R + E+ L SD + + L E ++K+ + S K + ++V K+ +
Sbjct: 6 SSNRMYM-EKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLE 64
Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKT-EEELKKEKTNSAALKNQ 579
+ K+Q + I K KT E EL K L Q
Sbjct: 65 NAQADVLKLQ-------------------EFIDTEKPHWKKTWEAELDKVCEEQQFLTLQ 105
Query: 580 ADSVG---KEYDRLLKEHEKVQKVVTEQG 605
+ + ++ + L+ + ++ EQ
Sbjct: 106 EELILDLKEDLGKALETFDLIKLCCEEQE 134
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 34.3 bits (78), Expect = 0.11
Identities = 15/116 (12%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDK 543
++ LK++ + +K + + Q +S + ++R KE ++ Q+
Sbjct: 111 VQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQ------------ 158
Query: 544 YQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
+++ ++ T+ +++K + + A+ +Y +L++ Q
Sbjct: 159 -------YFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQH 207
Score = 32.7 bits (74), Expect = 0.31
Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 485 KRLKEKLSKTEEELKKEKTNSA---ALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
K+L+ LSK + K K S E + +HE + + + Q
Sbjct: 49 KQLR-NLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDL 107
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
+Y + E K K ++ ++ + K + ++R KE ++ Q+
Sbjct: 108 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSK-------RRFERDCKEADRAQQYF 160
Query: 602 TEQGDKKD 609
+ +
Sbjct: 161 EKMDADIN 168
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 33.2 bits (75), Expect = 0.12
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 18/153 (11%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
+ + + S E +L E+ ++T +EL+ ++T A K ++ + E
Sbjct: 17 AQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETI----KIFEEQGQTQE 72
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTN-SAALKNQAD----- 581
K K E+ ++ ++ + I E+L E+ + +T L+ QA
Sbjct: 73 KSSKEYLERFRREGNEK---EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREI 129
Query: 582 -----SVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
S+ + +L K ++ +T++G ++
Sbjct: 130 DKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQK 162
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 33.7 bits (76), Expect = 0.14
Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
++L + ++ +L ++ ++ + E +R+ + H +V+ + +K +
Sbjct: 64 QQLT-EWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNW 122
Query: 545 QKGDSDEIKRLKEKLSKT-EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
QK + K +K E+ +K + A + ++ K + KE +
Sbjct: 123 QKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 178
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 32.7 bits (74), Expect = 0.15
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 11/127 (8%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL----------LKEHEKVQKV 532
I+ ++E+L + +E L + AD + + ++ E K
Sbjct: 4 RIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE 63
Query: 533 VTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592
+ D KY++ ++ ++ L + EE + + A L+ + +V L
Sbjct: 64 AKHIAEDADRKYEEVAR-KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122
Query: 593 EHEKVQK 599
+ E++
Sbjct: 123 KVEELLS 129
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 33.9 bits (78), Expect = 0.15
Identities = 10/91 (10%), Positives = 31/91 (34%), Gaps = 19/91 (20%)
Query: 478 EGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
+ +++K+ E+ + +A + Y +LK E +
Sbjct: 134 DAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPL-------- 185
Query: 538 DKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+E+++L++ +++L+
Sbjct: 186 -----------RNELQKLEDDAKDNQQKLEA 205
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 33.9 bits (78), Expect = 0.17
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
+ + ++ K+L SK KK K V + Y+ + E+V+++
Sbjct: 47 RRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCV 106
Query: 535 EQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
Q + K SD++ L ++ + EEE K
Sbjct: 107 LQLKQL----SKDLSDQVAGLAKEAQQLEEERDK 136
Score = 28.5 bits (64), Expect = 7.5
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 18/120 (15%)
Query: 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE------KVQKVVTEQGDKKDD 542
+ + + +++ ++ + + A K + K K E ++ V E +
Sbjct: 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTL 96
Query: 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE-----HEKV 597
K ++ + + +LK+ +++ L +A + +E D+L+ HE V
Sbjct: 97 KGEQVEQLCVLQLKQLSKDLSDQVA-------GLAKEAQQLEEERDKLMLNVGNILHESV 149
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 33.6 bits (76), Expect = 0.18
Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 454 EKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRL--KEKLSKTEEELKKEKTNSAALKSQ 511
E Y E + ++ E KR +L K EEE+++ +K +
Sbjct: 296 ELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQR--VKEK 353
Query: 512 ADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE---LKK 568
+ + L ++ ++++K+ DE K+L++K ++E K+
Sbjct: 354 EAELKEAEKELHEKFDRLKKLH---------------QDEKKKLEDKKKSLDDEVNAFKQ 398
Query: 569 EKTNSAALKNQADSVGKEYDRLLKEHEK 596
KT + L++Q G + +K
Sbjct: 399 RKTAAELLQSQGSQAGGSQTLKRDKEKK 426
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 33.0 bits (74), Expect = 0.20
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 2/129 (1%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
+ ++RL+EK EE ++ + A K ++ E + E
Sbjct: 114 AAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKE--KLAQKMESNKENRKYQEAELLKHL 171
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKV 600
+K + + ++E + + +K + K ++ L+E +K +
Sbjct: 172 AEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEE 231
Query: 601 VTEQGDKKD 609
V + + K+
Sbjct: 232 VRKNKELKE 240
Score = 32.2 bits (72), Expect = 0.33
Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 480 DSDEIKRLKEKL--SKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQG 537
+EI++ E + +E + K + + + + + + + + ++ + ++
Sbjct: 43 SLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKM 102
Query: 538 DKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597
+ + + + ++RL+EK EE ++ + A + KE+ K
Sbjct: 103 ESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKY 162
Query: 598 QK 599
Q+
Sbjct: 163 QE 164
Score = 31.5 bits (70), Expect = 0.69
Identities = 17/127 (13%), Positives = 44/127 (34%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
E+ + + + ++ KEK ++ + L + EK + + +
Sbjct: 77 REVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIE 136
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
+ + K ++ S E +E L + + + R ++E+ K+
Sbjct: 137 ENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMA 196
Query: 602 TEQGDKK 608
E+ +K
Sbjct: 197 KEKLAQK 203
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 33.2 bits (76), Expect = 0.22
Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 26/129 (20%)
Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNS-------AALKSQADSVGKEYDRLLKEHEKV 529
E + ++K++++ E +++ + + S ++Y++L H +
Sbjct: 212 AENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNM 271
Query: 530 QKVVTE-----QGDKKDDK--------------YQKGDSDEIKRLKEKLSKTEEELKKEK 570
+ + E D K + + + KR + + +L KEK
Sbjct: 272 ETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEK 331
Query: 571 TNSAALKNQ 579
L+ Q
Sbjct: 332 AEKERLEKQ 340
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 33.5 bits (76), Expect = 0.22
Identities = 14/137 (10%), Positives = 44/137 (32%), Gaps = 14/137 (10%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
E + + + ++ E+ + ++ + +++ L ++
Sbjct: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID--PELAREKFAELRAQYV 229
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
+ + +G + Q+ ++ K E K+ + +S+
Sbjct: 230 VTRDTIKAKG-RSHATAQE-----------EILKLSEVFKQFRLVPKQFDYLVNSMRVMM 277
Query: 588 DRLLKEHEKVQKVVTEQ 604
DR+ + + K+ EQ
Sbjct: 278 DRVRTQERLIMKLCVEQ 294
Score = 28.4 bits (63), Expect = 8.2
Identities = 9/126 (7%), Positives = 30/126 (23%), Gaps = 2/126 (1%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
+ + ++ E L T ++ D + +
Sbjct: 128 NQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
+ ++ + ++D D+ E + EL+ + +
Sbjct: 188 EDLD--DDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATA 245
Query: 588 DRLLKE 593
+ +
Sbjct: 246 QEEILK 251
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 31.7 bits (71), Expect = 0.23
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 462 ESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDR 521
E + EQ K ++ E + + + +L +K + L+ +D + D
Sbjct: 17 ELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKI----DE 72
Query: 522 LLKEHEKVQKVVTE--QGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKT 571
L E K++ + + + +D +++G I K +L KTE +LKK
Sbjct: 73 LDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKAVN 124
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring
surface protein, LYME borreliosis, factor H binding,
TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Length = 181
Score = 32.2 bits (73), Expect = 0.24
Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
+ I++LKE L LKK + + + ++++ ++ + E +
Sbjct: 66 KKENIEKLKEILEI----LKKNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQ 121
Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKE-----KTNSAALKNQADSVGKEYDRL 590
++ K +K++L KT E K + N L + K++D L
Sbjct: 122 EESKSLLMQIKSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTL 177
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA
repair, recombination, HOOK motif, replication; HET: DNA
CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Length = 112
Score = 31.3 bits (70), Expect = 0.27
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
++ L+ K + EEE + LK++ + + L K K E D+
Sbjct: 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHR 62
Query: 542 DKYQKGDSDEIKRLKEKLSKTEE---ELKKE 569
++ ++ K L+K + EL++E
Sbjct: 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERE 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 31.5 bits (71), Expect = 0.27
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
DE + L E+ K E E++K +T L+ + D+ L +E++ +Q
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52
Score = 31.1 bits (70), Expect = 0.37
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 549 SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQ 598
DE + L E+ K E E++K +T L+ + D+ L +E++ +Q
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 33.0 bits (76), Expect = 0.30
Identities = 9/94 (9%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
+G + + + + E + + L+ + + + E + K+ E V +++
Sbjct: 21 RGELEKVKWVDEILK----LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA 76
Query: 535 EQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ + I L+ ++ + ++++
Sbjct: 77 KS---------REIVKRIGELENEVEELKKKIDY 101
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 32.9 bits (74), Expect = 0.31
Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
++L ++ ++ L+ + +RL + H +V++ + ++ +
Sbjct: 55 QQLA-DWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTW 113
Query: 545 QKGDSDEIKRLKEKLSKT-EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
Q+G + S+ E+ +K + + ++ K Y K+ + Q
Sbjct: 114 QRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQT 169
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.9 bits (74), Expect = 0.32
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 466 RCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKE 525
R ++ +L + EE ++E A +K + + ++ +KE
Sbjct: 291 RSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREH--VAKMKKMEMEMEQVFEMKVKE 348
Query: 526 HEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQ 579
+ K + ++ ++ +K + K L+EK + E+E + L+ Q
Sbjct: 349 KVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 31.4 bits (71), Expect = 0.32
Identities = 11/88 (12%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
E K +L + E +L+ + ++K+ +D E K+ ++ ++ +
Sbjct: 31 EFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLE-----KDVMAQRQTFAQKAQAFEQ 85
Query: 543 KYQKGDSDEIKRLKEKLSKTEEELKKEK 570
+ ++E +L ++ + + +
Sbjct: 86 DRARRSNEERGKLVTRIQTAVKSVANSQ 113
Score = 29.1 bits (65), Expect = 2.5
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 503 TNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEK-LSK 561
A ++++ E+ E ++++ K K Q + + EK +
Sbjct: 16 QQVAQKTGVSNTLENEFKGRASELQRMET----DLQAKMKKLQSMKAGSDRTKLEKDVMA 71
Query: 562 TEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 608
+ ++ + D + + K ++Q V + +
Sbjct: 72 QRQTFAQKAQ-----AFEQDRARRSNEERGKLVTRIQTAVKSVANSQ 113
>3h6p_A ESAT-6 like protein ESXS; four-helix bundle, structural genomics,
PSI-2, protein struc initiative, TB structural genomics
consortium; 1.91A {Mycobacterium tuberculosis} PDB:
2kg7_A 3q4h_A
Length = 111
Score = 30.9 bits (69), Expect = 0.34
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 27/112 (24%)
Query: 118 QIIQLIAQQANLLAQN---EASMNQARQAAVAAQALLDGPRGKWF-GSHVWAYLTPNLLV 173
I QLIA A+ ++ QA Q A++AQA G F G+H
Sbjct: 21 HIPQLIASHTAFAAKAGLMRHTIGQAEQQAMSAQAFHQGESAAAFQGAH----------- 69
Query: 174 TRSYSTRVARSFSAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETTVT 225
AR +A ++ L LD+A NL E G + A ++ T
Sbjct: 70 --------ARFVAAAAKVNTL----LDIAQANLGEAAGTYVAADAAAASSYT 109
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 32.2 bits (74), Expect = 0.35
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
DEI+++ E +K + ++Q D + +K V E GDK
Sbjct: 122 DEIQKMVRDAEANAEADRKFE-ELVQTRNQGDHL----------LHSTRKQVEEAGDKLP 170
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNS 573
+ + L+ L ++ + K
Sbjct: 171 ADDKTAIESALTALETALKGEDKAAIEAKMQE 202
Score = 28.4 bits (64), Expect = 5.7
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH-EKV 597
DEI+++ E +K + +NQ D + + ++E +K+
Sbjct: 122 DEIQKMVRDAEANAEADRKFE-ELVQTRNQGDHLLHSTRKQVEEAGDKL 169
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.9 bits (76), Expect = 0.39
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 21/103 (20%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
+K L++KL +E++KEK ++A + + D + E+V+ +K+
Sbjct: 394 PNLKELEQKL----DEVRKEK-DAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448
Query: 542 DKYQKGDSDEI------------KRL----KEKLSKTEEELKK 568
+ + D+I ++ +KL E L
Sbjct: 449 QENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS 491
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular
signaling, cytoplasm, isopeptide bond, nucleus,
phosphoprotein, UBL conjugation; 2.70A {Mus musculus}
PDB: 3f89_A 2zvo_B 2zvn_B
Length = 94
Score = 30.5 bits (68), Expect = 0.40
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGD--KK 540
+++ L+++L + EE L A + D + +E ++ E V V+ Q D K
Sbjct: 3 QLEDLRQQLQQAEEAL-------VAKQELIDKLKEEAEQHKIVMETVP-VLKAQADIYKA 54
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTN 572
D + ++ +++ KE L + E+L++E
Sbjct: 55 DFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 32.6 bits (74), Expect = 0.41
Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
E ++ +E + + I+ + E + + E K E A + + A+ + ++ E +
Sbjct: 826 EWWNETIEAEEEFIRSVMEDIKEIIEVAKIENAKRAYIYT-AEDWKWKVAEVVSEKRDFK 884
Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590
+ E EI++ ++++K ++L KE+T N+ +E
Sbjct: 885 SSMEELMKDS----------EIRKHGKEVAKIVQKLIKERTFDVKRINEEK-ALREAKEF 933
Query: 591 LKEHEKVQKVVTEQGDKKD 609
+++ ++ ++ DK
Sbjct: 934 MEKELGIEIIINPTEDKGG 952
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 32.5 bits (75), Expect = 0.41
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 22/98 (22%)
Query: 487 LKEKLSKTE---EELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE-------Q 536
+ KL EE++ ++ + Q + + L +E+ ++ V Q
Sbjct: 5 IVAKLEALHERHEEVQALLGDAQTIADQ-----ERFRALSREYAQLSDVSRCFTDWQQVQ 59
Query: 537 GDKKDDKYQKGDSD-------EIKRLKEKLSKTEEELK 567
D + + D + E++ KEK + E++L+
Sbjct: 60 EDIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQ 97
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 32.6 bits (73), Expect = 0.43
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 283 SSCTQCVSSDFPCDWCVD------GHRCTHDTAENCRND 315
SSC QC++ C WC D RC D EN D
Sbjct: 11 SSCQQCLAVSPMCAWCSDEALPLGSPRC--DLKENLLKD 47
Score = 28.7 bits (63), Expect = 5.6
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 443 ANNCGLCLALPEKYGCGWCE------SSKRCEIFEQCDKGLEG-DSDEIKRLKEKLSKTE 495
++C CLA+ C WC S RC++ E K + + I+ + E
Sbjct: 10 VSSCQQCLAVSP--MCAWCSDEALPLGSPRCDLKENLLK--DNCAPESIEFPVSEARVLE 65
Query: 496 EELKKEKTNSAALKSQADSVGKEYDRLLKEHE-KVQKVVTEQGDKKDDKYQKGD-----S 549
+ +K + + + S + RL + V + D D Y D
Sbjct: 66 DRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMK 125
Query: 550 DEIKRLKEKLSKTEEELKKEKTN 572
D++ ++ +K +++K +N
Sbjct: 126 DDLWSIQNLGTKLATQMRKLTSN 148
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 30.3 bits (68), Expect = 0.45
Identities = 14/105 (13%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 495 EEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKR 554
+ ++ + L + + + +E + + K + V + + + E +R
Sbjct: 3 GSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKV------------QAEAER 50
Query: 555 LKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
L ++ ++ + E + K L ++ SV + + +K++K
Sbjct: 51 LDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 32.5 bits (74), Expect = 0.47
Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 26/132 (19%)
Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNS-------AALKSQADSVGKEYDRLLKEHEKV 529
E + ++K++++ E +++ + + S ++Y++L H +
Sbjct: 283 AENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNM 342
Query: 530 QKVVTE-----QGDKKDDK--------------YQKGDSDEIKRLKEKLSKTEEELKKEK 570
+ + E D K + + + KR + + +L KEK
Sbjct: 343 ETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEK 402
Query: 571 TNSAALKNQADS 582
L+ Q
Sbjct: 403 AEKERLEKQQKR 414
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 32.2 bits (72), Expect = 0.52
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 279 CNTYSSCTQCVSSDFPCDWCVD 300
C SC +C+ S C WC
Sbjct: 26 CQPAPSCQKCILSHPSCAWCKQ 47
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 31.8 bits (73), Expect = 0.59
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 489 EKLSKTE---EELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE-------QGD 538
+KL + E EL+ ++ LK + Y L + + ++ +V+ D
Sbjct: 3 DKLDRLEEEYRELEALLSDPEVLKDK-----GRYQSLSRRYAEMGEVIGLIREYRKVLED 57
Query: 539 KKDDKYQKGDSD-------EIKRLKEKLSKTEEELK 567
+ + D + E + L + E+EL+
Sbjct: 58 LEQAESLLDDPELKEMAKAEREALLARKEALEKELE 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 31.9 bits (73), Expect = 0.60
Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 474 DKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533
+ E S ++ + T +EL++ + +L+ + ++V + L+ + Q
Sbjct: 59 LRKGELRSKDLPGIIS----TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQ--- 111
Query: 534 TEQGDKKDDKYQKGD--SDEIKRLKEKLSKTEEELK 567
+Q + +G ++ L K ++ EE+
Sbjct: 112 VQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 32.2 bits (72), Expect = 0.64
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 7/126 (5%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
+++K + ++ + + + Y L KVQ+ + +Q
Sbjct: 577 NDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLT---TKVQESLKKQEGLLK 633
Query: 542 D-KYQKGDSDEIKRLKEKLSKTEE---ELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597
+ + + ++K+ + + EE L N L K Y+ L + +
Sbjct: 634 NIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRF 693
Query: 598 QKVVTE 603
Q ++
Sbjct: 694 QNKCSD 699
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 31.8 bits (71), Expect = 0.66
Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 2/126 (1%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
++L +K +L ++ +L+ ++ E D++ + H++V+ + + +K +
Sbjct: 55 QQLT-DWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNW 113
Query: 545 QKGDSDEIKRLKEKLSKT-EEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603
QK + K +K E+ +K + A + ++ K Y KE
Sbjct: 114 QKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMN 173
Query: 604 QGDKKD 609
++
Sbjct: 174 SKTEQS 179
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 31.8 bits (73), Expect = 0.66
Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 507 ALKSQADSVGKEYDRLLKEHEKVQKVVTE-------QGDKKDDKYQKGDSDEIKRLKEKL 559
L ++ D ++ E+ K++++ Q + + + + EI++ +++L
Sbjct: 10 KLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKEL 69
Query: 560 SKTEEELK 567
+ +EL
Sbjct: 70 DQLYQELL 77
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 31.4 bits (72), Expect = 0.74
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 26/102 (25%)
Query: 487 LKEKLSKTE---EELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTE-------Q 536
+ ++L E EEL + ++ + K + L +E ++ V
Sbjct: 15 IYDQLQAVEDRYEELGELLSDPDVVSDT-----KRFMELSREEANSRETVAVYREYKQVV 69
Query: 537 GDKKDDK----YQKGDSD-------EIKRLKEKLSKTEEELK 567
+ D + GD + E+K K + EE+L+
Sbjct: 70 QNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLR 111
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 31.4 bits (72), Expect = 0.95
Identities = 10/61 (16%), Positives = 25/61 (40%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
L D DE + + K + K K ++ L ++ + + E ++++ + K +
Sbjct: 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102
Query: 535 E 535
Sbjct: 103 S 103
Score = 30.7 bits (70), Expect = 1.5
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 548 DSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTE 603
D DE + + K + K K ++ L + + + E ++++ + K +
Sbjct: 48 DLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103
Score = 29.9 bits (68), Expect = 3.1
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 475 KGLEGDSDEIKR----------LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLK 524
GD + IK L +++ +E K + + + +SV KE + K
Sbjct: 9 VEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68
Query: 525 EHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
E + ++ E ++ S+E K + EK ++ ++ L+
Sbjct: 69 AKEDAKDLIAE---------KEKLSNEKKEIIEKEAEADKNLRS 103
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_B*
Length = 454
Score = 31.4 bits (70), Expect = 0.95
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 279 CNTYSSCTQCVSSDFPCDWCVD----------GHRCTHDTAEN 311
SC +C+ + C WC + RC D E
Sbjct: 9 KANAKSCGECIQAGPNCGWCTNSTFLQEGMPTSARC--DDLEA 49
>4epi_A Pesticin, lysozyme chimera; bacterial toxin, toxin, hydrolase;
1.74A {Yersinia pestis} PDB: 4exm_A 4arj_A
Length = 330
Score = 31.0 bits (69), Expect = 0.95
Identities = 17/122 (13%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 474 DKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVV 533
D +E DS+ +++++ ++ E +++ + G + R++ + + +
Sbjct: 63 DTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESI 122
Query: 534 TEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE 593
E DKK+++ D + + ++ + + S + SV +L+
Sbjct: 123 -EHLDKKENE------DILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVCFEMLRC 175
Query: 594 HE 595
E
Sbjct: 176 DE 177
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 31.0 bits (69), Expect = 0.98
Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 15/128 (11%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
K KE+ K ++ + + A ++Q +Y + ++ + E +
Sbjct: 115 KEFKEQWMKEQKRMNE--AVQALRRAQ-----LQYVQRSEDLRARSQGSPEDSAPQASPG 167
Query: 545 QKGDSDEIKRLKE----KLSKTEEELKKEKTNSAALKNQ----ADSVGKEYDRLLKEHEK 596
+ +R +E K + E + + A + + +L+ + ++
Sbjct: 168 PSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGDE 227
Query: 597 VQKVVTEQ 604
V + VT
Sbjct: 228 VLRRVTLS 235
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor);
four-helix-bundle, chaperone; 2.20A {Saccharomyces
cerevisiae} SCOP: a.7.5.1
Length = 106
Score = 29.4 bits (66), Expect = 1.0
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
RL KE Q+ + +Q + +LKE S +LKK++ L +
Sbjct: 15 RLTKEEGYYQQELKDQEAH------------VAKLKEDKSVDPYDLKKQEE---VLDDTK 59
Query: 581 DSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
+ Y+++ + E +++ + +D
Sbjct: 60 RLLPTLYEKIREFKEDLEQFLKTYQGTED 88
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 30.6 bits (70), Expect = 1.0
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 482 DEIKR-LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
EI +K+ +S E+++K A K +A V E + +
Sbjct: 119 SEIASMIKDSMSYAEQDVKARML--AEQKVEAARV----------LESLHGALAADAALL 166
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG-KEYDRLLKEHEKVQK 599
++ D L E + + ++ + Q + D+ ++ K
Sbjct: 167 SAAERQVIDDAAAHLSEVAQGDDVDAIEQAIK--NVDKQTQDFAARRMDQSVRRALKGHS 224
Query: 600 V 600
V
Sbjct: 225 V 225
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 29.2 bits (65), Expect = 1.1
Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
+E+K +++ K +E+L K + L+ Q ++ ++ + L ++++ V E K
Sbjct: 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKN- 72
Query: 542 DKYQKGDSDEIKRLKEK 558
+ + K + E+
Sbjct: 73 YHLENEVARLKKLVGER 89
Score = 28.0 bits (62), Expect = 2.6
Identities = 12/60 (20%), Positives = 30/60 (50%)
Query: 550 DEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
+E+K +++ K +E+L K + L+ Q ++ ++ + L ++++ V E K
Sbjct: 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNY 73
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 31.1 bits (69), Expect = 1.2
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 478 EGDSDEIKRLKEKLSKTEEELKKEKTN---SAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
+SD + K + +KTE+E K+ N ++ ++ LLK K+ K V
Sbjct: 15 YTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLK---KIPKDVL 71
Query: 535 EQGDKKDDKYQKGDSD-----EIKRLKEKLSKTEEELKKE----KTNSAALKNQADSVGK 585
E + + D D E++ L E+ + ++ K + +
Sbjct: 72 EIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLII 131
Query: 586 EYDRLLKEHEKVQKVVTEQG 605
E+ ++V E G
Sbjct: 132 NIKDYAINSEQSKEVYYEIG 151
Score = 28.8 bits (63), Expect = 6.0
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 535 EQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594
++ Y +SD + K + +KTE+E K+ N+ + + + D++ +
Sbjct: 6 HHAAAMNEHYT--ESDIKRNHKTEKNKTEKEKFKDSINNLV---KTEFTNETLDKIQQTQ 60
Query: 595 EKVQKVVTE 603
+ ++K+ +
Sbjct: 61 DLLKKIPKD 69
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 28.7 bits (64), Expect = 1.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
R+KE++ + + EL K LK + + RL +E +V K + K ++
Sbjct: 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71
Score = 28.0 bits (62), Expect = 2.2
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 553 KRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
R+KE++ + + EL K LK + + RL +E +V K + K +
Sbjct: 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 30.6 bits (68), Expect = 1.3
Identities = 13/119 (10%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 464 SKRCEIFEQCDKGLEGDSDEIK--------RLKEKLSKTEEELKKEKTNSAA-----LKS 510
+ +G E I+ + + + + + A L++
Sbjct: 165 KRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRA 224
Query: 511 QADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKE 569
+ + +G L E ++ V + +++ + + RLK + E+++++
Sbjct: 225 RMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQ 283
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 30.6 bits (69), Expect = 1.3
Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDK 543
+ ++ ++ T++E+ L + ++ K E Q ++ Q +
Sbjct: 161 LAPSEKPVTWTKQEIFFGPC----LLKEQSAIFKSK--WRHEANTWQNII--QTISNNQP 212
Query: 544 YQKGDSDEIKRLKEKLSKTEEELKK 568
+ +I+ L+ K++ E+ LK+
Sbjct: 213 VSTENQAKIRELEHKIALVEDVLKE 237
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK
snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Length = 104
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEK 528
E L++ LS+ E+E + + S L ++ + E DRL E+ +
Sbjct: 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83
Score = 28.6 bits (63), Expect = 1.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEK 596
E L++ LS+ E+E + + S L + + E DRL E+ +
Sbjct: 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 283 SSCTQCVSSDFPCDWCVD------GHRCTHDTAEN 311
SSC QC++ C WC D RC D EN
Sbjct: 11 SSCQQCLAVSPMCAWCSDEALPLGSPRC--DLKEN 43
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Length = 67
Score = 28.2 bits (62), Expect = 1.4
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 22/85 (25%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDK 543
+K L+EK+ EE++K A G + L K+ E+++K + E G
Sbjct: 4 VKALEEKVKALEEKVK------------ALGGGGRIEELKKKWEELKKKIEELGG----- 46
Query: 544 YQKGDSDEIKRLKEKLSKTEEELKK 568
E+K+++E++ K EEE+KK
Sbjct: 47 -----GGEVKKVEEEVKKLEEEIKK 66
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 30.4 bits (69), Expect = 1.5
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRL-----LKE--HEKVQKVVT 534
+E++ K ++ + +EL + + ++ + +K V +
Sbjct: 1 EEVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLI 60
Query: 535 EQGDKKDDKYQ 545
+ KYQ
Sbjct: 61 DLCQPTQKKYQ 71
Score = 29.6 bits (67), Expect = 2.4
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 521 RLLKEHEKVQKVVTEQGD-------------KKDDKYQKGDSDEIKRLKEKLSKTEEELK 567
R+ + K V G K ++ D + +LKEK + EEL
Sbjct: 167 RIAFGGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKGRLTEELL 226
Query: 568 K 568
+
Sbjct: 227 E 227
Score = 28.5 bits (64), Expect = 5.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKK 500
K D + +LKEK + EEL +
Sbjct: 202 KARRWDEKAVDKLKEKKGRLTEELLE 227
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 29.3 bits (66), Expect = 1.5
Identities = 6/66 (9%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 517 KEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAAL 576
E + + ++ V + + + S +K E+ + ++ + ++ A
Sbjct: 72 DELETTFRFNDAVIRSMV----MRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAG 127
Query: 577 KNQADS 582
++ +
Sbjct: 128 DSEEEE 133
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center
for structural genomics of I diseases, csgid,
oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Length = 223
Score = 30.0 bits (67), Expect = 1.7
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 169 PNLLVTRSYSTRVARSFSAQ---NGISDLKPRTLDLAIENLPELPGQLLCAF 217
P + T S S +V + F ++ ++L + +P + +L A+
Sbjct: 14 PKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAW 65
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.5 bits (69), Expect = 1.8
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
+ +D + +LK SKT E K+K +S ++V D L V+
Sbjct: 44 RRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDD--LTADALANLKVS 101
Query: 535 EQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ + + I + + K E E +
Sbjct: 102 QIKKVRLLI-----DEAILKCDAERIKLEAERFE 130
Score = 30.5 bits (69), Expect = 1.8
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 15/117 (12%)
Query: 489 EKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKV---QKVVTEQGDKKDDKYQ 545
++L K + E ++ + + L + K +K+ E V + V D
Sbjct: 34 DQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTAD 93
Query: 546 KGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE-----HEKV 597
+ ++ ++K+ +E + + + E L+E H V
Sbjct: 94 ALANLKVSQIKKVRLLIDEAIL-------KCDAERIKLEAERFENLREIGNLLHPSV 143
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 29.3 bits (65), Expect = 2.2
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 485 KRLKEKLSKTEE-ELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK--- 540
+ +++KL EE +E L + + + + ++E+ K+ E+ +K
Sbjct: 46 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMES 105
Query: 541 -DDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577
+ + + ++RL+EK EE K ++ A +
Sbjct: 106 NKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 143
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.0 bits (64), Expect = 2.4
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 536 QGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHE 595
G KK + + K K+K +K + K+K N A + + + ++
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGK---AKDKVNHAVFIEKKN-----VESIINNPS 58
Query: 596 KVQKVVT 602
KV KV+T
Sbjct: 59 KVGKVLT 65
Score = 27.4 bits (60), Expect = 7.5
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
K K+K +K + K+K N A + + + ++ KV KV+T
Sbjct: 24 KGGKKKWTKGK---AKDKVNHAVFIEKKN-----VESIINNPSKVGKVLT 65
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 29.9 bits (67), Expect = 2.4
Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 14/138 (10%)
Query: 468 EIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHE 527
E + + + ++ E+ + ++ + +++ L ++
Sbjct: 63 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPEL--AREKFAELRAQYV 120
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEY 587
+ + +G + Q+ KLS E K+ + +S+
Sbjct: 121 VTRDTIKAKG-RSHATAQE--------EILKLS---EVFKQFRLVPKQFDYLVNSMRVMM 168
Query: 588 DRLLKEHEKVQKVVTEQG 605
DR+ + + K+ EQ
Sbjct: 169 DRVRTQERLIMKLCVEQC 186
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Length = 109
Score = 28.6 bits (63), Expect = 2.5
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
E++ +E+L E +++K L+ + + + V + +
Sbjct: 23 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHE-----------KLRHAESVGDGERVSR 71
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ K L + K ++L
Sbjct: 72 SREKHALLEGRTKELGYTVKKHLQDLSG 99
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 29.9 bits (67), Expect = 2.5
Identities = 15/131 (11%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSAAL--KSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
++ + + L+ + N L + +A +++ + +KV ++ +
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNN 263
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTN----SAALKNQADSVGKEYDRLLKEHEKV 597
+ ++ ++++ + KK N A +N+A + D K
Sbjct: 264 KAAKT----QLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKE 319
Query: 598 QKVVTEQGDKK 608
++ G +
Sbjct: 320 EQKSNTAGSQS 330
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (63), Expect = 2.5
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 553 KRLKEKLSKTEEELKKEK-------------------TNSAALKNQADSVGKEYDRLLKE 593
KRL+++L + EL+KE + A+L+ Q +RL E
Sbjct: 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLE 77
Query: 594 HEKVQKVVTE 603
+K + + E
Sbjct: 78 VQKYEAWLAE 87
Score = 28.0 bits (62), Expect = 2.7
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 485 KRLKEKLSKTEEELKKEK-------------------TNSAALKSQADSVGKEYDRLLKE 525
KRL+++L + EL+KE + A+L+ Q +RL E
Sbjct: 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLE 77
Query: 526 HEKVQKVVTE 535
+K + + E
Sbjct: 78 VQKYEAWLAE 87
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 30.0 bits (68), Expect = 2.5
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 121 QLIAQ-----QANLLAQNEASMNQARQAAVAAQALLD 152
QL+ N + + EA++ + R A+A L
Sbjct: 57 QLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELK 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 29.6 bits (66), Expect = 2.9
Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 498 LKKEKTNSAAL--KSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRL 555
L + N L + +A + E++ + EKV +V + ++ + +I
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARL----QISMC 394
Query: 556 KEKLSKTEEELKKEK 570
++K +E ++++
Sbjct: 395 QKKA---KEHNERDR 406
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.8 bits (68), Expect = 3.0
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVT 534
KG+ D + + L + E+++ K ++++ + V K + E + + ++
Sbjct: 21 KGVALDLEALLAL-------DREVQELKKRLQEVQTERNQVAKRVPKAPPE--EKEALIA 71
Query: 535 EQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ E KRL+E L + E L+
Sbjct: 72 RGKALGE---------EAKRLEEALREKEARLEA 96
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 29.7 bits (66), Expect = 3.2
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 278 DCNTYS--SCTQCVSSDFPCDWCVD 300
+C + SC +C+ S C WC
Sbjct: 2 ECTKFKVSSCRECIESGPGCTWCQK 26
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 28.9 bits (64), Expect = 3.4
Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 484 IKRLKEKLSKTEEELKKE-KTNSAALKSQADSVGKEYDRLLKEH-EKVQKVVTEQGDKKD 541
+ + L K E L++E + +K++ ++ + +E E ++ V +
Sbjct: 69 TQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQ 128
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKE-KTNSAALKNQADSVGKEYDRLLKEH 594
+ ++ ++ L+EKLS EE++ + + AL+ E + L
Sbjct: 129 EGARQ----KLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAAR 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.4 bits (65), Expect = 3.4
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
+ +L+ L ++L+ E T Y+ E K E D D
Sbjct: 272 DFLKLRTMLITHMQDLQ-EVTQDLH-----------YENFRSERLKRGGRKVENEDMNKD 319
Query: 543 KYQKGDSDEIKRLKEKLSKTEEELKKEK----TNSAALKNQ 579
+ E++R++E +++ + +++ + + AL +
Sbjct: 320 QILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALGHH 360
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 27.9 bits (62), Expect = 3.6
Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
D ++ + + E+ K+ + L+ + E ++ + ++ Q E+ ++ +
Sbjct: 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ----EKLEQAE 78
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEE 565
K ++ E+ L ++ EEE
Sbjct: 79 KKATDAEA-EVASLNRRIQLVEEE 101
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 28.0 bits (62), Expect = 3.6
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 521 RLLKEHEKVQKVVTEQGDKKDD-KYQKGDSDEIKRLKEKLSKTEEEL----KKEKTNSAA 575
R++KE +K V + K D K + D ++K+ + L ++ + K+ ++ A
Sbjct: 19 RIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALAD 78
Query: 576 LKNQADSVGKEYDRLLKEHEKVQKVVTE 603
LK+ + + ++ E E +K V +
Sbjct: 79 LKSTLAELEETDEKEGPEIEDAKKTVAD 106
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 29.1 bits (64), Expect = 3.8
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 278 DCNTYS--SCTQCVSSDFPCDWCVD 300
+C + SC +C+ S C WC
Sbjct: 2 ECTKFKVSSCRECIESGPGCTWCQK 26
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 29.0 bits (64), Expect = 4.0
Identities = 11/113 (9%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 507 ALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEEL 566
++ + + + +++ + H + V+++ + ++ + I L K+ +++
Sbjct: 52 RIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQI 111
Query: 567 KKEKTNS---------------AALKNQADSVGKEYDRLLKEHEKVQKVVTEQ 604
+KE + ++Q S+ +++ +++ + VQ +
Sbjct: 112 EKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRR 164
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 28.4 bits (63), Expect = 4.2
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 17/137 (12%)
Query: 471 EQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQ 530
K LE ++EI+ ++++ + K+ A + + ++ + +
Sbjct: 15 SSGPKVLE-TAEEIQERRQEVLTRYQSFKER---VAERGQKLEDS-YHLQVFKRDADDLG 69
Query: 531 KVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRL 590
K + E+ + DK D I+ +K E E+ + K +
Sbjct: 70 KWIMEKVNILTDK-SYEDPTNIQGKYQKHQSLEAEV-------QTKSRLMSELEKTREER 121
Query: 591 LKE----HEKVQKVVTE 603
HE+ + + E
Sbjct: 122 FTMGHSAHEETKAHIEE 138
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 29.1 bits (66), Expect = 5.0
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 551 EIKRLKEKLSKTEEELKKEKTNSAALKNQ-------ADSVGKEYDRLLKEHEKVQKV 600
+R +++L + ++ + L + + V E RL + E+ +++
Sbjct: 801 WRRRQEKRLKELLALAER---SQRKLASPGFREKAPKEVVEAEEARLKENLEQAERI 854
>2fd6_U Urokinase plasminogen activator surface receptor; UPAR, ATF,
ATN-615 antibody, FAB, ternary complex, immune SY
hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo
sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 PDB: 3bt2_U*
3bt1_U* 2i9b_E* 3u74_U* 3u73_U*
Length = 276
Score = 28.8 bits (63), Expect = 5.1
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 210 PGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSS---NG 266
GQ LC TI E ++ + T S G + V N
Sbjct: 20 LGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ 79
Query: 267 PDFVTTKFMFFDCNTYSSCTQCVSSDFPCD 296
+ + + + + + Y C C SSD C+
Sbjct: 80 GN--SGRAVTYSRSRYLECISCGSSDMSCE 107
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 29.2 bits (64), Expect = 5.1
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 276 FFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENC 312
+ + ++C+ C CT +NC
Sbjct: 519 EGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNC 555
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 5.2
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 36/124 (29%)
Query: 168 TPNLLVTRSYSTRVARSFSAQNGISDLKPR-----TLDLAIENLPELPGQ-LLCAF---- 217
+ + + +YS+ V + + + + P L+L+ + L+ A+
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGK--KFLVIAYEPFE 172
Query: 218 TIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFF 277
I AI+ +P + +++G D + K F+
Sbjct: 173 NI--------AIE--------------LPPNEILFSE--NNDMDNNNDGVDELNKKCTFW 208
Query: 278 DCNT 281
D +
Sbjct: 209 DAIS 212
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 27.9 bits (62), Expect = 5.3
Identities = 13/125 (10%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
+++I+ ++++ K+ S + + + + ++ E+++K + E+
Sbjct: 13 TAEDIQERRQQVLDRYHRFKEL---STLRRQKLEDS-YRFQFFQRDAEELEKWIQEKLQI 68
Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQK 599
D+ D ++ +K E E+ A + + + ++ E +
Sbjct: 69 ASDE-NYKDPTNLQGKLQKHQAFEAEV-------QANSGAIVKLDETGNLMISEGHFASE 120
Query: 600 VVTEQ 604
+ +
Sbjct: 121 TIRTR 125
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 26.4 bits (58), Expect = 5.3
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 525 EHEKVQKVVTEQGDK-KDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ + V QGD ++ K +K +++ ++L + E K+
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKE 45
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 28.9 bits (65), Expect = 6.2
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
RLKE+ + EL++ + + E +R L+++ +++ +
Sbjct: 178 GYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELE----NEIRDIMK 233
Query: 543 KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKE----HEKVQ 598
K + G+ K +E + K +G +YD L+ E K+
Sbjct: 234 KLESGELYGRKLAEEVVRAQMVTTYK--------------LGVKYDLLVWESDIVRRKLF 279
Query: 599 KVVTEQGDKKD 609
++ E K +
Sbjct: 280 EIALELLSKNE 290
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 26.0 bits (57), Expect = 6.4
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 533 VTEQGDK-KDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ QG+ + K +K ++ E L + E K+
Sbjct: 6 IAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKE 42
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil,
protein transpor; 2.10A {Salmonella typhimurium}
Length = 150
Score = 27.6 bits (61), Expect = 7.2
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 116 IRQIIQLIAQQANLLAQNEASMNQARQAAVAAQA 149
I+ + + I Q L Q ++ A ++ +
Sbjct: 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQ 109
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 7.6
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
D ++R K +L E LKKEK D +E RL + ++ + + ++
Sbjct: 404 DALERKKLQLEIEREALKKEK----------DPDSQE--RL----KAIEAEIAKLTEEIA 447
Query: 542 D-----KYQKGDSDEIKRLKEKLSKTEEELKK 568
+ ++ +++ + +L + E++
Sbjct: 448 KLRAEWEREREILRKLREAQHRLDEVRREIEL 479
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP:
h.4.17.1 PDB: 1wpa_A 3g7c_A
Length = 140
Score = 27.6 bits (61), Expect = 7.7
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 483 EIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDD 542
+ + ++LS+ ++EL + S +EY E+ ++++V K
Sbjct: 67 VLDEINKELSRLDKELDDYREES-----------EEYMAAADEYNRLKQV------KGSA 109
Query: 543 KYQKGDSDEIKRLKEKLS 560
Y+ + K+LK KLS
Sbjct: 110 DYKS-KKNHCKQLKSKLS 126
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein;
2.50A {Mus musculus} SCOP: h.4.16.1
Length = 96
Score = 26.6 bits (58), Expect = 7.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLK 592
D QK +EI RL +++ ++L+K + NS L+N+A + E + K
Sbjct: 46 DMTQKHLEEEIARLSKEI----DQLEKMQNNSKLLRNKAVQLESELENFSK 92
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 28.0 bits (62), Expect = 8.4
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 521 RLLKEHEKVQKVVTEQGDK---KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALK 577
L H + + + E K + ++ L + + + K +S A
Sbjct: 42 AQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARL 101
Query: 578 NQADSVGKEYDRLLKE 593
+S+ KE
Sbjct: 102 RSLESLHSFVAAATKE 117
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 28.5 bits (62), Expect = 8.6
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 277 FDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRN 314
+ ++ +C S C C ++ C
Sbjct: 519 GEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQ 556
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 28.1 bits (63), Expect = 8.7
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAAL 508
+GLE + ++++ T +EL E AL
Sbjct: 295 EGLEINEFA----RKRMEITAQELLDEMEQVKAL 324
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 28.2 bits (63), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 115 VIRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDG 153
R ++Q + N + + +S+N +QA V+AQ+ LD
Sbjct: 319 AHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDA 357
>1ywh_A Urokinase plasminogen activator surface receptor; UPAR,
three-finger fold, protein-peptide complex, hydrolase;
HET: ALC NAG FUC NDG BMA MAN; 2.70A {Homo sapiens} SCOP:
g.7.1.3 g.7.1.3 g.7.1.3
Length = 313
Score = 28.0 bits (61), Expect = 9.5
Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 7/133 (5%)
Query: 210 PGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAKLSVRSSN-GPD 268
GQ LC TI E ++ + T S G + V +
Sbjct: 19 LGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ 78
Query: 269 FVTTKFMFFDCNTYSSCTQCVSSDFPCDW-CVDGHRCTHDTAENCRNDILITGVSRVGPS 327
+ + + + + Y C C SSD C+ +C E C L +
Sbjct: 79 GNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPE-EQC----LDVVTHWIQEG 133
Query: 328 FRSGPAFCPTIRG 340
P +RG
Sbjct: 134 EEGRPKDDRHLRG 146
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 26.7 bits (59), Expect = 9.8
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 32/97 (32%)
Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
RL+KE Y+K E K+ +EK+ K ++ E + +K QA
Sbjct: 18 RLVKERV---------------MYEK----EAKQQEEKIEK----MRAEDGENYDIKKQA 54
Query: 581 DSVGKE--------YDRLLKEHEKVQKVVTEQGDKKD 609
+ + +E RL + +Q+++ + D ++
Sbjct: 55 E-ILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEE 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,947,916
Number of extensions: 539048
Number of successful extensions: 2189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2060
Number of HSP's successfully gapped: 251
Length of query: 609
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 510
Effective length of database: 3,937,614
Effective search space: 2008183140
Effective search space used: 2008183140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)