RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy114
(609 letters)
>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 40.6 bits (95), Expect = 1e-05
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 444 NNCGLCLALPEKYGCGWCESSKRCEIFEQCDKG 476
+C CL+ P CGWC +C E+C G
Sbjct: 9 QSCSQCLSAPPFVQCGWC--HDKCVRSEECLSG 39
Score = 36.8 bits (85), Expect = 3e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 279 CNTYSSCTQCVSSD--FPCDWCVDGHRCTHDTAENCRND 315
C + SC+QC+S+ C WC +C +E C +
Sbjct: 5 CRHFQSCSQCLSAPPFVQCGWC--HDKCV--RSEECLSG 39
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 36.5 bits (84), Expect = 4e-04
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 279 CNTYSSCTQCVSSDFP-CDWCVDGHRCT 305
C + +C CV + P C W C
Sbjct: 2 CGKHGTCEDCVLARDPYCAWSPPTATCV 29
Score = 35.4 bits (81), Expect = 0.001
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 444 NNCGLCLALPEKYGCGWCESSKRCEIFEQCD 474
C C+ + Y C W + C Q +
Sbjct: 6 GTCEDCVLARDPY-CAWSPPTATCVALHQTE 35
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 35.1 bits (80), Expect = 0.012
Identities = 12/97 (12%), Positives = 38/97 (39%)
Query: 508 LKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELK 567
+ D +++ H+++ V E+ + L+ KL + +
Sbjct: 14 INRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQ 73
Query: 568 KEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVVTEQ 604
++ + + QA++ + + +L++++ V E+
Sbjct: 74 RDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEE 110
>d1tyeb3 g.16.2.1 (B:1-57) Integrin beta-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 31.8 bits (72), Expect = 0.019
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 283 SSCTQCVSSDFPCDWCVD------GHRCTHDTAEN 311
SSC QC++ C WC D RC D EN
Sbjct: 11 SSCQQCLAVSPMCAWCSDEALPLGSPRC--DLKEN 43
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 32.6 bits (74), Expect = 0.028
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSA-----ALKSQADSVGKEYDRLLKEHEKVQK-VVTEQG 537
+KRL+++ ++++ AL + + K + E +V K V
Sbjct: 4 LKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP 63
Query: 538 DKKDDKYQKGD--SDEIKRLKEKLSKTEEELKK 568
++K+ +G +E KRL+E L + E L+
Sbjct: 64 EEKEALIARGKALGEEAKRLEEALREKEARLEA 96
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 31.8 bits (72), Expect = 0.064
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 479 GDSDEIKRLKEKLSKTEEELKKE--------KTNSAALKSQADSVGKEYD---RLLKEHE 527
G S+EI+RL E+L E+ +++ L + D LL++HE
Sbjct: 1 GSSNEIRRL-ERLEHLAEKFRQKASTHETWAYGKEQILLQK-DYESASLTEVRALLRKHE 58
Query: 528 KVQKVVTEQGDKKDDKYQKG---------DSDEIKRLKEKLSKTEEELKKE 569
+ + D+ + D+ + +K+ + L
Sbjct: 59 AFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTL 109
>d1j33a_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Thermus thermophilus
[TaxId: 274]}
Length = 333
Score = 32.2 bits (73), Expect = 0.17
Identities = 13/47 (27%), Positives = 17/47 (36%)
Query: 116 IRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSH 162
+ IA+ A LLA + + AA ALL P G
Sbjct: 142 REAARRAIAEGATLLAAGDMGIGNTTAAAALTAALLGLPPEAVVGRG 188
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 30.1 bits (68), Expect = 0.20
Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKY 544
+ ++ +L++ ++ L+++ + K + + E +K + ++ D +
Sbjct: 1 QNVQHQLAQFQQ-LQQQAQAISVQKQT-------VEMQINETQKALEELSRAADDAEVYK 52
Query: 545 QKGD-------SDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKV 597
G+ + + L+EKL + K ++ Q + V K+ + ++
Sbjct: 53 SSGNILIRVAKDELTEELQEKLETLQLREKT-------IERQEERVMKKLQEMQVNIQEA 105
Query: 598 QK 599
K
Sbjct: 106 MK 107
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor
associated protein (RAP) {Human (Homo sapiens) [TaxId:
9606]}
Length = 105
Score = 29.9 bits (67), Expect = 0.24
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 517 KEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
K ++ +++H QK + +K GD + + R +EK + E K+
Sbjct: 33 KHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKE 84
Score = 27.6 bits (61), Expect = 1.5
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
E++ +E+L E +++K L+ + + E +
Sbjct: 23 KELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERV----------SRSR 72
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKK 568
+K+ K L + K ++L
Sbjct: 73 EKHAL-LEGRTKELGYTVKKHLQDLSG 98
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 31.7 bits (71), Expect = 0.33
Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 9/98 (9%)
Query: 477 LEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSV---------GKEYDRLLKEHE 527
D +E + E+ + L + + + Y +LLK+ +
Sbjct: 660 QINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQ 719
Query: 528 KVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565
+ + + D + ++ + + E
Sbjct: 720 EKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757
Score = 30.2 bits (67), Expect = 0.97
Identities = 27/297 (9%), Positives = 66/297 (22%), Gaps = 24/297 (8%)
Query: 334 FCPTIRGTDIGSQEILVPSGVKKAVKVKVHIVGQFIVQTRFVCLFNIEGRFTKVNAQLLG 393
P RG +EI ++ I + + + L
Sbjct: 447 MHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLL---LGLS 503
Query: 394 DVIYCDPMEFTYNSSVSNINASLAVIWGGSKPLDNPDNVHVNIYKCRDLANNCGLCLALP 453
P + + + + ++ +
Sbjct: 504 GNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPH 563
Query: 454 EKYGCGWCESSKRCEIFEQCDKGLEGDSD-EIKRLKEKLSKTEEELKKEKTNSAALKSQA 512
K + E + + + D +RL+ ++ K ++K K +
Sbjct: 564 GKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVT 623
Query: 513 DSVGKEYDRLLKEH----EKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ + L+ + + Q D +E + E+ +
Sbjct: 624 NKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTEN 683
Query: 569 EKTNSAALKNQADSV----------------GKEYDRLLKEHEKVQKVVTEQGDKKD 609
L + + K+ E E + K+ + D
Sbjct: 684 VINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTD 740
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.5 bits (66), Expect = 0.54
Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 485 KRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK---- 540
+ +++KL EE K ++ ++ +E + E + ++ +
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMES 104
Query: 541 -DDKYQKGDSDEIKRLKEKLSKTEEELKKE 569
+ + + ++RL+EK EE K +
Sbjct: 105 NKENREAHLAAMLERLQEKDKHAEEVRKNK 134
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 28.5 bits (64), Expect = 0.71
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDK 539
+ DEI+++ E +K + ++Q D + +K V E GDK
Sbjct: 2 NEDEIQKMVRDAEANAEADRKFE-ELVQTRNQGDHL----------LHSTRKQVEEAGDK 50
Query: 540 KDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTN 572
+ + L+ L ++ + K
Sbjct: 51 LPADDKTAIESALTALETALKGEDKAAIEAKMQ 83
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 30.1 bits (67), Expect = 0.77
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 487 LKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQK 546
+KEK + E+ L ++ D ++ E+ K++++ K+ +
Sbjct: 1 MKEKKKEIEKLL-----------ARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFI 49
Query: 547 GDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQAD 581
E + ++ K E+EL + L +
Sbjct: 50 ELLREEGENELEIEKYEKELDQLYQELLFLLSPEA 84
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain
{Vibrio cholerae [TaxId: 666]}
Length = 129
Score = 28.7 bits (64), Expect = 0.78
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 475 KGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKE---------YDRLLKE 525
+ LK ++ K E K+ + + + + KE D+ +
Sbjct: 7 ARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINV 66
Query: 526 HEKVQKVVTEQGDKKDDKYQKGDSDEI--KRLK-----------EKLSKTEEELKKE 569
+ + + + +E +R+ +L EE++K
Sbjct: 67 LRQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKAL 123
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 29.9 bits (67), Expect = 0.84
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 513 DSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKK 568
+ KE + ++ + K ++ D+ D+ ++I+RL+EK+ + E K
Sbjct: 173 LKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKN 228
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD
{Escherichia coli [TaxId: 562]}
Length = 81
Score = 27.6 bits (61), Expect = 1.1
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 486 RLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQ 545
+++E + E+ + AL+ + + L++ + + +
Sbjct: 9 QVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDG---KLLAAVNQTLVSFDHP 65
Query: 546 KGDSDEI 552
D DE+
Sbjct: 66 LTDGDEV 72
Score = 26.1 bits (57), Expect = 3.7
Identities = 5/41 (12%), Positives = 16/41 (39%)
Query: 554 RLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEH 594
+++E + E+ + AL+ + + L++
Sbjct: 9 QVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDG 49
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 27.7 bits (62), Expect = 1.3
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 521 RLLKEHEKVQKVVTEQGDKKDD-KYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQ 579
RL+KE +K +Q +K + + + G++ +IK+ E L ++
Sbjct: 15 RLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRM--------------- 59
Query: 580 ADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
+ RL + +Q+++ + D ++
Sbjct: 60 --MIPDCQRRLEAAYLDLQRILENEKDLEE 87
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 28.2 bits (63), Expect = 1.4
Identities = 14/84 (16%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 487 LKEKLSKTEEELKKEKT-NSAALKSQADSVGKEY-DRLLKEHEKVQKVVTEQGDKKDDKY 544
L+E+L+ EE + + A +++ + ++ RL++ +VQ ++ + ++
Sbjct: 57 LEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEE----L 112
Query: 545 QKGDSDEIKRLKEKLSKTEEELKK 568
+ + +++L+++L + ++L+K
Sbjct: 113 RVRLASHLRKLRKRLLRDADDLQK 136
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit,
C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 119
Score = 27.9 bits (62), Expect = 1.4
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 4 QWTLIATVLYFEMAFMLLLILPILS 28
+A+VLYF ++L+++P
Sbjct: 89 TIGQLASVLYF---LLILVLMPTAG 110
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 27.0 bits (60), Expect = 1.7
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 343 IGSQEILVPSGVKKAVKVKVHIV------GQFIVQTRFVCLFNIEGRFTKVNAQLLGDVI 396
+ ++VP+GV VK+ ++ G+ +
Sbjct: 3 VAKAPVVVPAGVD--VKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPR--DGYA 58
Query: 397 YCDPMEFTYNSSVSNI 412
T + ++++
Sbjct: 59 DGWAQAGTARALLNSM 74
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 27.9 bits (62), Expect = 1.8
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 5 WTLIATVLYFEMAFMLLLILPILS 28
IAT +YF L+I+P++S
Sbjct: 90 MGQIATFIYF---AYFLIIVPVIS 110
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 27.3 bits (61), Expect = 2.0
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 521 RLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQA 580
RL KE Q+ + +Q + +LKE S +LKK++ L +
Sbjct: 12 RLTKEEGYYQQELKDQEAH------------VAKLKEDKSVDPYDLKKQEE---VLDDTK 56
Query: 581 DSVGKEYDRLLKEHEKVQKVVTEQGDKKD 609
+ Y+++ + E +++ + +D
Sbjct: 57 RLLPTLYEKIREFKEDLEQFLKTYQGTED 85
Score = 27.0 bits (60), Expect = 2.6
Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 484 IKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYD-----RLLKEHEKV-----QKVV 533
+KRL ++ ++ELK ++ + A LK D YD +L + +++ +K+
Sbjct: 10 LKRLTKEEGYYQQELKDQEAHVAKLK--EDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIR 67
Query: 534 TEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEELK 567
+ D + ++++ + ++ +E L
Sbjct: 68 EFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 101
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 2/128 (1%)
Query: 482 DEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKKD 541
+ IK + +K+++ +E+ KK + GK L+K + K ++ D
Sbjct: 22 EPIKTVGKKIAELDEKKKKLTED--VNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIK 79
Query: 542 DKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVGKEYDRLLKEHEKVQKVV 601
Q + +E+K+ K Y + + + + K +
Sbjct: 80 KSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYL 139
Query: 602 TEQGDKKD 609
+ +
Sbjct: 140 NQNDATQQ 147
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.6 bits (63), Expect = 2.5
Identities = 12/124 (9%), Positives = 37/124 (29%), Gaps = 8/124 (6%)
Query: 454 EKYGCGWCESSKRCEIFEQCDKGLEGDSDEIKRLKEKLSKTEEELKKEKTNSAALKSQAD 513
E + Q D+ L EI+ + K + K + +
Sbjct: 176 EILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMME 235
Query: 514 SVGKEY--------DRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKEKLSKTEEE 565
+ Y +++ + ++ K K + ++ + ++ + ++
Sbjct: 236 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Query: 566 LKKE 569
L+ +
Sbjct: 296 LQTK 299
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 27.9 bits (62), Expect = 2.7
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 524 KEHEKVQKVVTEQGDKKDDKYQ---KGDSDE-IKRLKEKLSKTEEELKKEK 570
K E++ +V+ E + + + + K D I+ +EK+ E+E E+
Sbjct: 28 KHRERMSQVMREWEEA-ERQAKNLPKADKKAVIQHFQEKVESLEQEAANER 77
>d1l5oa_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Salmonella typhimurium
[TaxId: 90371]}
Length = 346
Score = 28.3 bits (63), Expect = 2.7
Identities = 8/47 (17%), Positives = 10/47 (21%)
Query: 116 IRQIIQLIAQQANLLAQNEASMNQARQAAVAAQALLDGPRGKWFGSH 162
R L + L E M AA + G
Sbjct: 153 SRYTCDLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIG 199
>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite
(Dermatophagoides farinae) [TaxId: 6954]}
Length = 131
Score = 27.1 bits (60), Expect = 2.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 515 VGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGD 548
+G+E++ + ++V+ V+ ++GD K + Q GD
Sbjct: 66 LGEEFEEDRADGKRVKTVIQKEGDNKFVQTQFGD 99
>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 27.8 bits (61), Expect = 3.0
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 166 YLTPNLLVTRSYSTRVARSF--SAQNGISDLKPRTLDLAIENLPELPGQLLCAFTIGETT 223
L ++L S S +++ F + S + DLA +P L G+L+ A +
Sbjct: 5 VLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAP 64
Query: 224 VTTE 227
+T
Sbjct: 65 LTPR 68
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 25.4 bits (56), Expect = 4.0
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 483 EIKRLKEKLSKTEEELKK--EKTNSAALKSQA--DSVGKEYDRLLKEHEKVQKV 532
+R +++L + ++ K S + +A + V E RL + E+ +++
Sbjct: 5 WRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERI 58
Score = 25.4 bits (56), Expect = 4.4
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 551 EIKRLKEKLSKTEEELKK--EKTNSAALKNQA--DSVGKEYDRLLKEHEKVQKV 600
+R +++L + ++ K S + +A + V E RL + E+ +++
Sbjct: 5 WRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERI 58
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 27.6 bits (60), Expect = 4.9
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 4/127 (3%)
Query: 199 LDLAIENLPELPGQLLCAFTIGETTVTTEAIKQTNGVKCATPPTKDIPSIPVGQHNITAK 258
LD I+ LP+ A T + GV ++ +
Sbjct: 69 LDTTIKELPDWAEDEPVAKTRQTQQDDLYIHSEPLGVVLVIGAWNYPFNLTIQPMVG--- 125
Query: 259 LSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDWCVDGHRCTHDTAENCRNDILI 318
+V + N ++ + ++ G T + + + I+
Sbjct: 126 -AVAAGNAVILKPSEVSGHMADLLATLIPQYMDQNLYLVVKGGVPETTELLKERFDHIMY 184
Query: 319 TGVSRVG 325
TG + VG
Sbjct: 185 TGSTAVG 191
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 6.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 480 DSDEIKRLKEKLSKTEEELKKEKTNS 505
S E+ RLK+ +S +E+ ++ +
Sbjct: 331 SSKEVARLKKLVSYWKEQAGRKGDDE 356
Score = 27.3 bits (59), Expect = 6.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 548 DSDEIKRLKEKLSKTEEELKKEKTNS 573
S E+ RLK+ +S +E+ ++ +
Sbjct: 331 SSKEVARLKKLVSYWKEQAGRKGDDE 356
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 27.5 bits (61), Expect = 6.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 83 HGHLDAEMQNNMKLFRAQRNFYISG-FSLFLWLVIRQIIQ 121
H + N+ F + + Y+ G +LWL Q+I
Sbjct: 601 HWKHLGVWEGNVAQF-NESSTYLMGWLRDYLWLNSSQLIN 639
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis
[TaxId: 1423]}
Length = 157
Score = 26.6 bits (58), Expect = 6.4
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 537 GDKKDDKYQKGDSDEIKRLKEKLSKTEEELKKEKTNSAALKNQADSVG-KEYDRLLKEHE 595
G K+ ++G + KRL EL EK + KE DR+L +
Sbjct: 9 GKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKIS 68
Query: 596 K 596
Sbjct: 69 P 69
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 26.3 bits (58), Expect = 6.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 463 SSKRCEIFEQCDKGLEGDSDEI-KRLKEKL 491
+ IF G+ D +I + LK +L
Sbjct: 94 TDPGASIFTIAKYGIVADIFDIEEELKAQL 123
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency
virus [TaxId: 11723]}
Length = 114
Score = 25.7 bits (57), Expect = 7.6
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 20/64 (31%)
Query: 462 ESSKRCE-IFEQCDKGLEGDSDEIKRL-------------------KEKLSKTEEELKKE 501
E+ + C+ I + S+ +K L +E + L E
Sbjct: 47 ENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVE 106
Query: 502 KTNS 505
+
Sbjct: 107 TGTA 110
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.5 bits (58), Expect = 9.0
Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 481 SDEIKRLKEKLSKTEEELKKEKTNSAALKSQADSVGKEYDRLLKEHEKVQKVVTEQGDKK 540
+ ++ EK E + T +K+ + + + ++ V ++
Sbjct: 164 AKSVREFLEKNYTDEAIETDDLTIKLVIKAL-------LEVVQSGGKNIELAVM----RR 212
Query: 541 DDKYQKGDSDEIKRLKEKLSKTEEELKKEK 570
D + + +EI++ ++ K +EE +K+K
Sbjct: 213 DQSLKILNPEEIEKYVAEIEKEKEENEKKK 242
>d1fdqa_ b.60.1.2 (A:) Brain fatty acid binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 131
Score = 26.0 bits (57), Expect = 9.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 515 VGKEYDRLLKEHEKVQKVVTEQGDKKDDKYQKGDSDEIKRLKE 557
+G+E+D + + VV+ GDK QK D E ++E
Sbjct: 66 LGEEFDETTADDRNCKSVVSLDGDKLVHI-QKWDGKETNFVRE 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,198,611
Number of extensions: 105861
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 69
Length of query: 609
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 518
Effective length of database: 1,158,166
Effective search space: 599929988
Effective search space used: 599929988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)