BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1140
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSPVP 71
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S +
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSPVP 71
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S +
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSPVP 71
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S +
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSPVP 71
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S +
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSS 65
GTL+G DQTIN++L+ HERVYS G+E + LG+H+I+GD++ + ++
Sbjct: 24 GTLRGIDQTINVVLEKCHERVYSDE-GIEVIPLGVHLIKGDDVAVIGEVDDE 74
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSPVP 71
G+LKGFD T N+IL DS ER+ S +E + LG++++RG+N+ + ++ S +
Sbjct: 23 GSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIE 80
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKIS 63
F G ++ FDQ NI+L D+ ER+Y ++ LGL IRGDN+ I +I
Sbjct: 23 FIGIMRTFDQFANIVLQDTIERIYVGDCYSDK-NLGLFFIRGDNVVILGEID 73
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3
SV=1
Length = 92
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVV---LGLHIIRGDNIKIPTKISSSTRSPV 70
G LKGFDQ +N++LDD E++ +P G LGL ++RG + + + S P
Sbjct: 48 GILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPN 107
Query: 71 P 71
P
Sbjct: 108 P 108
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3
SV=1
Length = 92
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 14 GTLKGFDQTINIILDDSHERVY-SPTAGVEQVVLGLHIIRGDNI 56
G L+ FDQ N+IL D ER+Y S + G+ +IRG+N+
Sbjct: 66 GVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 12 FQGTLKGFDQTINIILDDSHE--RVYSPTAGV----EQVVLGLHIIRGDNI 56
F GT K FD+ +N+IL D E ++ S + V E+ VLG ++RG+NI
Sbjct: 27 FIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENI 77
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKIS 63
+G + GFD+ +N++LDD+ E VY T ++ LG +++GDNI + +S
Sbjct: 43 EGHIVGFDEYMNLVLDDAEE-VYVKTR--QRRNLGRIMLKGDNITLIQNVS 90
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
G L+GFD +NI L D+ E V SPT E+ +G+ IIRG++I
Sbjct: 30 HGILRGFDTFMNIALKDTVE-VVSPT---EKYEIGMVIIRGNSI 69
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVP 71
+ P P
Sbjct: 81 TVEGPPP 87
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVPD 72
+ P P
Sbjct: 81 TVEGPPPK 88
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVPD 72
+ P P
Sbjct: 81 TVEGPPPK 88
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVPD 72
+ P P
Sbjct: 81 TVEGPPPK 88
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVPD 72
+ P P
Sbjct: 81 TVEGPPPK 88
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVPD 72
+ P P
Sbjct: 81 TVEGPPPK 88
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 5/43 (11%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
GTL+GFDQ +N+++D++ E G E+ +G+ +IRG+++
Sbjct: 30 GTLRGFDQFMNLVVDNTVE-----VNGNEKNDIGMVVIRGNSV 67
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVP 71
+ P P
Sbjct: 81 TVEGPPP 87
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 5/43 (11%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
GTL+GFDQ +N+++D++ E G ++ +G+ +IRG++I
Sbjct: 30 GTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRGNSI 67
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 9 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 63
Query: 65 STRSPVPD 72
+ P P
Sbjct: 64 TVEGPPPK 71
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVP 71
+ P P
Sbjct: 81 TVEGPPP 87
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVP 71
+ P P
Sbjct: 81 TVEGPPP 87
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 12 FQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISSS 65
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S +
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENL-----VSMT 81
Query: 66 TRSPVP 71
P P
Sbjct: 82 VEGPPP 87
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos
taurus GN=SNRPB PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVP 71
+ P P
Sbjct: 81 TVEGPPP 87
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNI 56
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGV----EQVVLGLHIIRGDNI 56
QG LKG+DQ +NI LD + E + + E+ LGL + RG ++
Sbjct: 34 QGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSSV 81
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 10 IFFQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
I QG ++GFD+ +NI+LDD+ A + LG +++GDNI
Sbjct: 36 IRLQGQIRGFDEFMNIVLDDA----VQVDAKNNKRELGRILLKGDNI 78
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 12 FQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNI 56
F G K FD+ +NI+L + E R P AG E+ +LGL ++RG++I
Sbjct: 27 FIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHI 77
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3
SV=1
Length = 92
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E V+ T + LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-VHMKTKNRKP--LGRIMLKGDNITLLQSVSN 92
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 11 FFQGTLKGFDQTINIILDDSHE-RVYSPTAGV-----EQVVLGLHIIRGDNIKIPTKISS 64
F GT K FD+ +N+IL D E R P E+ VLGL ++RG+N+ +S
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL-----VSM 80
Query: 65 STRSPVP 71
+ P P
Sbjct: 81 TVEGPPP 87
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
F GTL GFD +NI L D E Y+P GL ++ DNI
Sbjct: 40 FVGTLLGFDAYVNIFLKDVTEYEYTPE--------GLKTVKLDNI 76
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 14 GTLKGFDQTINIILDDSHERVYSP--TAGVEQV-----VLGLHIIRG 53
G LKG+DQ +N++LDD+ E + +P E + LGL +IRG
Sbjct: 50 GVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRG 96
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
+ G L+G+D +NI+L ++ E + GV VL +RGDN+
Sbjct: 32 YSGILEGYDVYMNIVLQNASEIINGENKGVYDRVL----VRGDNV 72
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSP--TAGVEQVVL--GLHIIRGDNIKI 58
F+GTL GFD +N+IL+D+ E + P + E+V+ G ++ G+NI I
Sbjct: 30 FEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAI 80
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
F+G LK FD +N++L+D+ E G LG +IRGDNI
Sbjct: 36 FRGVLKSFDLHMNLVLNDAEE----LEDGEVTRRLGTVLIRGDNI 76
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPT 60
+G LK +DQ +NIIL D+ E LGL ++RGD++ + T
Sbjct: 31 IKGVLKTYDQHLNIILGDAEE-----IGETSIRRLGLTLVRGDSVVVIT 74
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
F+G LKG+D +N++LD++ E G G +IRGDN+
Sbjct: 27 FRGELKGYDIHMNLVLDNAEE----LREGEVVSKFGSVVIRGDNV 67
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 12 FQGTLKGFDQTINIILDDSHE----RVYSPTAGVEQVVLGLHIIRGDNI 56
F+G LKG+D +N++LD++ E V S + V +IRGDN+
Sbjct: 27 FRGELKGYDIHMNLVLDNAEELREGEVVSKFSSV--------VIRGDNV 67
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 10 IFFQGTLKGFDQTINIILDDSHERVYSPTAGVEQVV----LGLHIIRGDNIKIPT 60
I +G + GFD+ +N+++D++ E + G E V LG +++GDNI + T
Sbjct: 37 IRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLIT 91
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
F+G L+G+D +N++LD++ E + + LG I+RGD +
Sbjct: 27 FRGELQGYDMHMNLVLDNAEELKENEAS----RKLGTIIVRGDTV 67
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 12 FQGTLKGFDQTINIILDDSHE----RVYSPTAGVEQVVLGLHIIRGDNI 56
F+G LKG+D +N++LD++ E V S + V +IRGDN+
Sbjct: 27 FRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSV--------VIRGDNV 67
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
QG L+GFD +N+++D E V T+G +Q +G+ +IRG++I
Sbjct: 28 QGILRGFDPFMNLVID---ECVEMATSG-QQNNIGMVVIRGNSI 67
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNI 56
QG L+GFD +N+++D E V T+G +Q +G+ +IRG++I
Sbjct: 28 QGILRGFDPFMNLVID---ECVEMATSG-QQNNIGMVVIRGNSI 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,061,583
Number of Sequences: 539616
Number of extensions: 1989026
Number of successful extensions: 5587
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 5552
Number of HSP's gapped (non-prelim): 70
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)