Your job contains 1 sequence.
>psy1140
MTTFTILSLIFFQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPT
KISSSTRSPVPDPQLTDNFILLPQIWGIERRTLSFMRFGYRPSVDVLHLSASALKVESMA
FIMGLTLPCVLSHDLFLPPWNS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1140
(142 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 197 9.8e-16 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 194 2.0e-15 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 194 2.0e-15 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 194 2.0e-15 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 139 1.4e-09 1
GENEDB_PFALCIPARUM|MAL8P1.9 - symbol:MAL8P1.9 "u6 snRNA-a... 130 1.2e-08 1
UNIPROTKB|C0H4Y9 - symbol:MAL8P1.9 "U6 snRNA-associated S... 130 1.2e-08 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 120 1.4e-07 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 97 3.9e-05 1
UNIPROTKB|E1BHK8 - symbol:SNRPE "Small nuclear ribonucleo... 93 0.00010 1
UNIPROTKB|P62303 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
UNIPROTKB|A4FUI2 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
UNIPROTKB|A6NHK2 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
UNIPROTKB|P62304 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
UNIPROTKB|A1XQR9 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
UNIPROTKB|I3LDW9 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
MGI|MGI:98346 - symbol:Snrpe "small nuclear ribonucleopro... 90 0.00021 1
RGD|2318883 - symbol:LOC100362099 "small nuclear ribonucl... 90 0.00021 1
RGD|2319339 - symbol:LOC100361838 "small nuclear ribonucl... 90 0.00021 1
RGD|2321675 - symbol:Snrpe "small nuclear ribonucleoprote... 90 0.00021 1
DICTYBASE|DDB_G0279837 - symbol:lsm1 "LSM (like-Sm) domai... 91 0.00045 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 86 0.00057 1
UNIPROTKB|F1N150 - symbol:F1N150 "Uncharacterized protein... 85 0.00072 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 84 0.00093 1
UNIPROTKB|J9P098 - symbol:LOC100855941 "Uncharacterized p... 84 0.00093 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 84 0.00093 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 84 0.00093 1
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 36/47 (76%), Positives = 43/47 (91%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKI 58
F GTLKGFDQTINII+D+ HERV+S T+G+EQ+VLGLHIIRGDNI +
Sbjct: 22 FIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRGDNIAV 68
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRS 68
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDS 79
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRS 68
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDS 79
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRS 68
GTLKGFDQTIN+ILD+SHERV+S + GVEQVVLGL+I+RGDN+ + +I T S
Sbjct: 25 GTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDS 79
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKI 58
GTL+G DQTIN++L+ HERVYS G+E + LG+H+I+GD++ +
Sbjct: 24 GTLRGIDQTINVVLEKCHERVYSDE-GIEVIPLGVHLIKGDDVAV 67
>GENEDB_PFALCIPARUM|MAL8P1.9 [details] [associations]
symbol:MAL8P1.9 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070
GO:GO:0005732 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKI 58
F G LKGFDQT NIIL + HER+Y + +E++ LG++IIRGD + +
Sbjct: 24 FTGKLKGFDQTTNIILGNCHERIYKES--MEKISLGVYIIRGDTVTL 68
>UNIPROTKB|C0H4Y9 [details] [associations]
symbol:MAL8P1.9 "U6 snRNA-associated Sm-like protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0017070 "U6
snRNA binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070 GO:GO:0005732
EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKI 58
F G LKGFDQT NIIL + HER+Y + +E++ LG++IIRGD + +
Sbjct: 24 FTGKLKGFDQTTNIILGNCHERIYKES--MEKISLGVYIIRGDTVTL 68
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSPV 70
G+LKGFD T N+IL DS ER+ S +E + LG++++RG+N+ + ++ S +
Sbjct: 23 GSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEI 79
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAG-VEQVV--LGLHIIRGDNIKIPTKISSSTRSPV 70
G LKGFDQ +N++LDD E++ +P G + + LGL ++RG + + + S P
Sbjct: 48 GILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPN 107
Query: 71 P 71
P
Sbjct: 108 P 108
>UNIPROTKB|E1BHK8 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 EMBL:DAAA02049203 IPI:IPI00690390
Ensembl:ENSBTAT00000022848 OMA:PPINCIY NextBio:20929647
Uniprot:E1BHK8
Length = 92
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G++ GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGSIIGFDECMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>UNIPROTKB|P62303 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65702 EMBL:L19064 IPI:IPI00587414 RefSeq:NP_990581.1
UniGene:Gga.23395 ProteinModelPortal:P62303 SMR:P62303
MINT:MINT-124835 STRING:P62303 PRIDE:P62303
Ensembl:ENSGALT00000000190 GeneID:396180 KEGG:gga:396180
InParanoid:P62303 NextBio:20816234 Uniprot:P62303
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>UNIPROTKB|A4FUI2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 EMBL:BC114915
IPI:IPI00845188 RefSeq:NP_001076928.1 UniGene:Bt.36560
ProteinModelPortal:A4FUI2 SMR:A4FUI2 STRING:A4FUI2 PRIDE:A4FUI2
GeneID:531493 KEGG:bta:531493 CTD:6635 HOVERGEN:HBG003229
InParanoid:A4FUI2 OrthoDB:EOG4DBTGC NextBio:20875471
PANTHER:PTHR11193 Uniprot:A4FUI2
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>UNIPROTKB|A6NHK2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AC114402
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 HGNC:HGNC:11161 ChiTaRS:SNRPE
EMBL:AC118554 IPI:IPI00647942 ProteinModelPortal:A6NHK2 SMR:A6NHK2
STRING:A6NHK2 PRIDE:A6NHK2 Ensembl:ENST00000367208
HOGENOM:HOG000293268 ArrayExpress:A6NHK2 Bgee:A6NHK2 Uniprot:A6NHK2
Length = 52
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 4 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 52
>UNIPROTKB|P62304 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471067 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 OMA:VQIWLYE EMBL:M37716 EMBL:M15919 EMBL:X12466
EMBL:AK312130 EMBL:BC002639 EMBL:BC090951 EMBL:M21258 EMBL:M21253
IPI:IPI00029266 PIR:A32127 RefSeq:NP_003085.1 UniGene:Hs.334612
UniGene:Hs.654418 ProteinModelPortal:P62304 SMR:P62304
DIP:DIP-31220N IntAct:P62304 MINT:MINT-225773 STRING:P62304
PhosphoSite:P62304 DMDM:61237380 PaxDb:P62304 PRIDE:P62304
DNASU:6635 Ensembl:ENST00000414487 GeneID:6635 KEGG:hsa:6635
UCSC:uc001hai.3 GeneCards:GC01P203834 HGNC:HGNC:11161 MIM:128260
neXtProt:NX_P62304 PharmGKB:PA36002 InParanoid:P62304 ChiTaRS:SNRPE
EvolutionaryTrace:P62304 GenomeRNAi:6635 NextBio:25849
ArrayExpress:P62304 Bgee:P62304 CleanEx:HS_SNRPE
Genevestigator:P62304 GermOnline:ENSG00000182004 Uniprot:P62304
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>UNIPROTKB|A1XQR9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 HOVERGEN:HBG003229 PANTHER:PTHR11193
EMBL:DQ629140 EMBL:DQ629141 RefSeq:NP_001090934.1 UniGene:Ssc.1070
UniGene:Ssc.75275 ProteinModelPortal:A1XQR9 GeneID:100038330
KEGG:ssc:100038330 Uniprot:A1XQR9
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>UNIPROTKB|I3LDW9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:FP312914
EMBL:FP565233 ProteinModelPortal:I3LDW9 SMR:I3LDW9 PRIDE:I3LDW9
Ensembl:ENSSSCT00000023057 Uniprot:I3LDW9
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>MGI|MGI:98346 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein E" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027078
MGI:MGI:98346 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 CTD:6635 HOVERGEN:HBG003229
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65703 EMBL:X65704 EMBL:AK019462 EMBL:BC008262 EMBL:BC051207
EMBL:BC055765 IPI:IPI00133955 PIR:I48778 RefSeq:NP_033253.1
UniGene:Mm.249110 ProteinModelPortal:P62305 SMR:P62305
PhosphoSite:P62305 PRIDE:P62305 Ensembl:ENSMUST00000166915
GeneID:20643 KEGG:mmu:20643 UCSC:uc007cql.2 NextBio:299051
Bgee:P62305 CleanEx:MM_SNRPE Genevestigator:P62305 Uniprot:P62305
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>RGD|2318883 [details] [associations]
symbol:LOC100362099 "small nuclear ribonucleoprotein polypeptide
E-like" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027078 RGD:2318883
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:PPINCIY
IPI:IPI00368169 RefSeq:XP_002728814.1 RefSeq:XP_003753347.1
Ensembl:ENSRNOT00000040164 GeneID:100362099 KEGG:rno:100362099
UCSC:RGD:2318883 Uniprot:D4A8M5
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>RGD|2319339 [details] [associations]
symbol:LOC100361838 "small nuclear ribonucleoprotein E-like"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 RGD:2319339 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 OrthoDB:EOG4DBTGC PANTHER:PTHR11193 OMA:INIIFRY
IPI:IPI00363837 RefSeq:XP_001065908.1 Ensembl:ENSRNOT00000043934
GeneID:360844 KEGG:rno:360844 CTD:360844 NextBio:674328
Uniprot:D4AAS3
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 10 IFFQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
I +G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 41 IRIKGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>RGD|2321675 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein polypeptide E"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA;ISO]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR027078 RGD:2321675 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11097 OrthoDB:EOG4DBTGC PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE IPI:IPI00198418
RefSeq:XP_001064438.1 RefSeq:XP_002727191.1
Ensembl:ENSRNOT00000042614 GeneID:685587 KEGG:rno:685587 CTD:685587
NextBio:730016 Uniprot:D3ZSP1
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>DICTYBASE|DDB_G0279837 [details] [associations]
symbol:lsm1 "LSM (like-Sm) domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0279837 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0000932
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AAFI02000033
Pfam:PF01423 GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
KO:K12620 OMA:IERIHVG RefSeq:XP_641509.1 HSSP:O26745
ProteinModelPortal:Q54W83 STRING:Q54W83 EnsemblProtists:DDB0233402
GeneID:8622249 KEGG:ddi:DDB_G0279837 eggNOG:COG1958
ProtClustDB:CLSZ2430662 Uniprot:Q54W83
Length = 129
Score = 91 (37.1 bits), Expect = 0.00045, P = 0.00045
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 12 FQGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKI 58
F G ++ FDQ NI+L D+ ER+Y ++ LGL IRGDN+ I
Sbjct: 23 FIGIMRTFDQFANIVLQDTIERIYVGDCYSDKN-LGLFFIRGDNVVI 68
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 43 EGCIIGFDEYRNLVLDDAEE-IHSKTKSRKQ--LGRIMLKGDNITLIQSVSN 91
>UNIPROTKB|F1N150 [details] [associations]
symbol:F1N150 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:DAAA02057271
IPI:IPI00826986 Ensembl:ENSBTAT00000011044 OMA:IFRCLQN
Uniprot:F1N150
Length = 92
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G GFD+ +N++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCTIGFDEYMNLVLDDA-EDIHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 14 GTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISSSTRSP 69
G L+GFD +NI L D+ E V SPT E+ +G+ IIRG++I + + S P
Sbjct: 31 GILRGFDTFMNIALKDTVE-VVSPT---EKYEIGMVIIRGNSILLMEPLESMAYVP 82
>UNIPROTKB|J9P098 [details] [associations]
symbol:LOC100855941 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
OMA:VQIWLYE EMBL:AAEX03000616 Ensembl:ENSCAFT00000003298
Uniprot:J9P098
Length = 92
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 13 QGTLKGFDQTINIILDDSHERVYSPTAGVEQVVLGLHIIRGDNIKIPTKISS 64
+G + GFD+ ++++LDD+ E ++S T +Q LG +++GDNI + +S+
Sbjct: 44 EGCIIGFDEYMSLVLDDAKE-IHSKTKSRKQ--LGRIMLKGDNITLLQSVSN 92
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 14 GTLKGFDQTINIILDDSHERVYSP----TAGVEQVVLGLHIIRGDNIKI 58
G L+GFDQ +N++LDD E + P G E LGL + RG I +
Sbjct: 36 GVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTAITV 84
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 14 GTLKGFDQTINIILDDSHERVYSP----TAGVEQVVLGLHIIRGDNIKI 58
G L+GFDQ +N++LDD E + P G E LGL + RG I +
Sbjct: 36 GVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTAITV 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.140 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 142 142 0.00091 102 3 11 22 0.39 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 557 (59 KB)
Total size of DFA: 129 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.96u 0.10s 14.06t Elapsed: 00:00:10
Total cpu time: 13.96u 0.11s 14.07t Elapsed: 00:00:10
Start: Thu Aug 15 13:40:56 2013 End: Thu Aug 15 13:41:06 2013