BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11400
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDT-VADWIDVLSGG 238
+D +++ T ++ I G A E ++ ++ +I+N +G+DT V + LSGG
Sbjct: 422 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI--TLFTVSHRKSLWTH 296
+KQR+++AR+F + P ILDE TSA+ ++ E + E + T V+HR S TH
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541
Query: 297 HE 298
+
Sbjct: 542 AD 543
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 163 KPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNR 221
K RG + VPQ + GT+++ + + +ED TD ++ E + Q+ +I++
Sbjct: 413 KDLRGHISAVPQETVLFSGTIKENLKW--GREDA-----TDDEIVEAAKIAQIHDFIISL 465
Query: 222 EKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV 280
+G+D+ V SGG+KQR+++AR +P+ ILD+CTS+V E + + +
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525
Query: 281 --GITLFTVSHR 290
G T F ++ +
Sbjct: 526 TKGCTTFIITQK 537
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-----LGYILN 220
R K+ V Q P + ++ + + Y + E +Q+V + +I N
Sbjct: 417 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVT--------AEEIQRVAEVANAVAFIRN 468
Query: 221 REKGWDTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279
+G++TV VL SGG+KQR+A+AR P+ +LDE TSA+ + E + E
Sbjct: 469 FPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528
Query: 280 V--GITLFTVSHRKS 292
+ G T+ ++HR S
Sbjct: 529 LMDGRTVLVIAHRLS 543
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R ++ V Q P + ++ + +IY + +T A + E + + +I +G
Sbjct: 1152 RSQIAIVSQEPTLFDCSIAENIIY-----GLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY---CREV 280
++T V D LSGG+KQR+A+AR P+ +LDE TSA+ + E + E RE
Sbjct: 1207 FETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE- 1265
Query: 281 GITLFTVSHR 290
G T ++HR
Sbjct: 1266 GRTCIVIAHR 1275
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R + V Q P + T+ + + + ++GIT ++ + +I G
Sbjct: 491 RKNVAVVSQEPALFNCTIEENI-------SLGKEGITREEMVAACKMANAEKFIKTLPNG 543
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
++T V D LSGG+KQR+A+AR P+ +LDE TSA+ + EG + + + G
Sbjct: 544 YNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603
Query: 282 ITLFTVSHRKS 292
T ++HR S
Sbjct: 604 RTTIIIAHRLS 614
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTV 228
V Q P + T+ + + Y D I+K + +A+ +++ K+ + L E+G
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-- 526
Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---SMYEYCREVGITLF 285
LSGG+KQR+A+AR P+ +LDE TSA+ + E + + RE G T
Sbjct: 527 ------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTI 579
Query: 286 TVSHRKS 292
++HR S
Sbjct: 580 VIAHRLS 586
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKE----DMIQKGITDADLTEYLQKVQLGYILNR 221
R +L V Q P + ++ + + Y + I + +A++ +++ +
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLP------- 1158
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV- 280
+K V D LSGG+KQR+A+AR +P +LDE TSA+ + E + E +
Sbjct: 1159 DKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 281 -GITLFTVSHRKS 292
G T ++HR S
Sbjct: 1219 EGRTCIVIAHRLS 1231
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTV 228
V Q P + T+ + + Y D I+K + +A+ +++ K+ + L E+G
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-- 526
Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---SMYEYCREVGITLF 285
LSGG+KQR+A+AR P+ +LDE TSA+ + E + + RE G T
Sbjct: 527 ------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTI 579
Query: 286 TVSHRKS 292
++HR S
Sbjct: 580 VIAHRLS 586
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKE----DMIQKGITDADLTEYLQKVQLGYILNR 221
R +L V Q P + ++ + + Y + I + +A++ +++ +
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLP------- 1158
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV- 280
+K V D LSGG+KQR+A+AR +P +LDE TSA+ + E + E +
Sbjct: 1159 DKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 281 -GITLFTVSHRKS 292
G T ++HR S
Sbjct: 1219 EGRTCIVIAHRLS 1231
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-----LGYILN 220
R K+ V Q P + ++ + + Y + E +Q+V + +I N
Sbjct: 448 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVT--------AEEIQRVAEVANAVAFIRN 499
Query: 221 REKGWDTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279
+G++TV VL SGG+KQR+A+AR P+ +LDE TSA+ + E + E
Sbjct: 500 FPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 559
Query: 280 V--GITLFTVSHRKS 292
+ G T+ ++H S
Sbjct: 560 LMDGRTVLVIAHHLS 574
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 172 VPQRPYMTLGTLRDQVIY---PHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228
VPQ + T++ ++Y T E++I K A L ++++ + K WDT+
Sbjct: 98 VPQDTILFNETIKYNILYGKLDATDEEVI-KATKSAQLYDFIEALP--------KKWDTI 148
Query: 229 ADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLF 285
+ LSGGE+QR+A+AR P+ I DE TS++ E + ++ TL
Sbjct: 149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLI 208
Query: 286 TVSHRKSLWTHHE 298
++HR S + E
Sbjct: 209 IIAHRLSTISSAE 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I DE TSA+ + E
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++HR S
Sbjct: 183 NMHKICK--GRTVIIIAHRLS 201
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I DE TSA+ + E
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++HR S
Sbjct: 181 NMHKICK--GRTVIIIAHRLS 199
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I DE TSA+ + E
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++HR S
Sbjct: 187 NMHKICK--GRTVIIIAHRLS 205
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I DE TSA+ + E
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++HR S
Sbjct: 183 NMHKICK--GRTVIIIAHRLS 201
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ V Q ++ T+ + + Y T E+ ++ I +A Y + +I + G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAY----AMDFINKMDNGL 470
Query: 226 DTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GI 282
DT+ VL SGG++QR+A+AR ILDE TSA+ + E ++ E+
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 283 TLFTVSHRKS 292
T ++HR S
Sbjct: 531 TSLVIAHRLS 540
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I D+ TSA+ + E
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++HR S
Sbjct: 187 NMHKICK--GRTVIIIAHRLS 205
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ V Q ++ T+ + + Y T E ++ I +A Y + +I + G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYART-EQYSREQIEEAARMAY----AMDFINKMDNGL 470
Query: 226 DTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GI 282
DTV VL SGG++QR+A+AR ILDE TSA+ + E ++ E+
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 283 TLFTVSHRKS 292
T ++HR S
Sbjct: 531 TSLVIAHRLS 540
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT-VAD 230
V Q P + + R+ + Y T+ +++ IT + +I +G+DT V +
Sbjct: 98 VGQEPLLFGRSFRENIAYGLTRTPTMEE-ITAVAMESGAHD----FISGFPQGYDTEVGE 152
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFT 286
+ LSGG++Q VA+AR +P+ ILD+ TSA+ V+ +YE T+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 287 VSHRKSLW--THH 297
++H+ SL HH
Sbjct: 213 ITHQLSLAERAHH 225
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
+K+ + ++L+R+ LSGGE+QRVA+AR +P+ +LDE SAV + +
Sbjct: 112 EKLGIAHLLDRKPAR---------LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 271 GSMYEYC----REVGITLFTVSH 289
G + E RE + + V+H
Sbjct: 163 GVLMEELRFVQREFDVPILHVTH 185
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ-KVQLGYILNREKG 224
R ++ +V Q + GT+R+ + Y ++ TD DL + L ++ N
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYG------LEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
+T V + +SGG++QR+A+AR F P+ +LDE T+++ + E + + + G
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 282 ITLFTVSHRKS 292
T ++HR S
Sbjct: 189 RTTLVIAHRLS 199
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
+A E L KV L D + D LSGG+ QRVA+AR P+ + DE
Sbjct: 136 AEAKAMELLDKVGL---------KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 262 TSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
TSA+ ++ G + +++ G+T+ V+H
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252
+E + K DA + E L+ ++L NR + LSGG++QRVA+AR R
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLESYANR---------FPHELSGGQQQRVALARALAPR 163
Query: 253 PQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
PQ + DE +A+ + + + R+V G+T V+H
Sbjct: 164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKE---DMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228
V Q ++ T+ + + Y E + I++ A E+++ N +G DTV
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE--------NMPQGLDTV 473
Query: 229 -ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLF 285
+ LSGG++QRVA+AR ILDE TSA+ + E ++ E+ T+
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVL 533
Query: 286 TVSHRKS 292
++HR S
Sbjct: 534 VIAHRLS 540
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
+A E L KV L D + D LSGG+ QRVA+AR P+ + DE
Sbjct: 115 AEAKAMELLDKVGL---------KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 165
Query: 262 TSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
TSA+ ++ G + +++ G+T+ V+H
Sbjct: 166 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTK--EDMIQKGITDADLTEYLQKVQLGYILN-RE 222
R + VPQ + T+ D + Y D ++ A + + + GY E
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186
Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCR 278
+G LSGGEKQRVA+AR P +LDE TSA+ ++ S+ + C
Sbjct: 187 RGLK--------LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC- 237
Query: 279 EVGITLFTVSHRKS 292
T V+HR S
Sbjct: 238 -ANRTTIVVAHRLS 250
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
LSGG+KQRVA+AR P+ + DE TSA+ S+ E +++ G+T+ ++H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I DE TSA+ + E
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++ R S
Sbjct: 181 NMHKICK--GRTVIIIAARLS 199
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
+I +G++T V + LSGG++QR+A+AR + P+ I DE TSA+ + E
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 272 SMYEYCREVGITLFTVSHRKS 292
+M++ C+ G T+ ++ R S
Sbjct: 187 NMHKICK--GRTVIIIAARLS 205
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
LSGG++QRVA+AR P +LDE S + + S +EV G+TL VSH
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 168 KLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227
++ V Q P + +L++ + Y T++ +++ IT A + +I +G+DT
Sbjct: 92 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE-ITAAAVKSGAHS----FISGLPQGYDT 146
Query: 228 VADWI-DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGI 282
D LSGG++Q VA+AR +P ILD+ TSA+ + VE +YE
Sbjct: 147 EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 206
Query: 283 TLFTVSHRKSL 293
++ ++ SL
Sbjct: 207 SVLLITQHLSL 217
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
LSGG+KQRVA+AR P+ + D+ TSA+ S+ E +++ G+T+ ++H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKED-----MIQKG--ITDADLTEYLQKVQLGYI 218
+G + YVPQ+ ++ +LR+ +++ E+ +IQ + D ++ + ++G
Sbjct: 65 KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG-- 122
Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
EKG + LSGG+KQRV++AR Y + D+ SAV V ++E
Sbjct: 123 ---EKGVN--------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
LSGG+KQRVA+AR P+ + D+ TSA+ S+ E +++ G+T+ ++H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT-VAD 230
V Q P + + R+ + Y T+ +++ IT + +I +G+DT V +
Sbjct: 98 VGQEPLLFGRSFRENIAYGLTRTPTMEE-ITAVAMESGAHD----FISGFPQGYDTEVGE 152
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFT 286
+ LSGG++Q VA+AR +P+ ILD TSA+ V+ +YE T+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 287 VSHRKSLW--THH 297
++ + SL HH
Sbjct: 213 ITQQLSLAERAHH 225
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSHR 290
LSGG++QRVA+AR P+ +LDE S + ++V + +E+GIT V+H
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 291 KS 292
++
Sbjct: 194 QA 195
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 225 WDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS-----MYEYCR 278
+D+ D + LSGGEK+RVA+A + H P ILDE V +D EG + E +
Sbjct: 128 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE--PLVGLDREGKTDLLRIVEKWK 185
Query: 279 EVGITLFTVSHRKSLWTHH 297
+G T+ +SH +H
Sbjct: 186 TLGKTVILISHDIETVINH 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 225 WDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS-----MYEYCR 278
+D+ D + LSGGEK+RVA+A + H P ILDE V +D EG + E +
Sbjct: 130 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE--PLVGLDREGKTDLLRIVEKWK 187
Query: 279 EVGITLFTVSHRKSLWTHH 297
+G T+ +SH +H
Sbjct: 188 TLGKTVILISHDIETVINH 206
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
LSG ++QRVA+AR P +LDE S + + S +EV G+TL VSH
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 161 VTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT----------KEDMIQKGITDADLTEYL 210
V P +G +VP + + +YPH K + K D + E
Sbjct: 70 VADPEKG--VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVA 127
Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS---- 266
+ + L +LNR+ LSGG++QRVA+ R RP+ + DE S +
Sbjct: 128 EXLGLTELLNRKPRE---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLR 178
Query: 267 VDVEGSMYEYCREVGITLFTVSH 289
V + + R++G+T V+H
Sbjct: 179 VKXRAELKKLQRQLGVTTIYVTH 201
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
P+MT+ D + +P + ++ I D + E + + L +LNR+ L
Sbjct: 94 PHMTV---YDNIAFPLKLRKVPRQEI-DQRVREVAELLGLTELLNRKPRE---------L 140
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
SGG++QRVA+ R +PQ ++DE S + V + + + R++G+T V+H
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS---MYEYCREVGITLFTVSHRK 291
LSGG++QRV++AR P + DE TSA+ ++ G + + E G T+ V+H
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 292 SLWTH 296
H
Sbjct: 214 GFARH 218
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 32/152 (21%)
Query: 163 KPPRGKLFY-------VPQRPYMTLG-TLRDQVIYPHT----------KEDMIQKGITDA 204
KP G++++ +P + Y +G ++ +YPH + I K +
Sbjct: 54 KPTSGEIYFDDVLVNDIPPK-YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEK 112
Query: 205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
+ E +K+ + +L+R+ LSGG++QRVA+AR +P+ + DE S
Sbjct: 113 RVVEIARKLLIDNLLDRKPTQ---------LSGGQQQRVALARALVKQPKVLLFDEPLSN 163
Query: 265 VSVDV----EGSMYEYCREVGITLFTVSHRKS 292
+ ++ + +E+GIT V+H ++
Sbjct: 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294
LSGGE+QRVA+AR P+ +LDE SA ++ E RE + +V H+K+
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSA----LDPRTQENARE----MLSVLHKKNKL 179
Query: 295 T 295
T
Sbjct: 180 T 180
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 188 IYPH--TKEDM--------IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
+YPH E+M +K + + + + + +QL ++L+R+ LSG
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSG 136
Query: 238 GEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSH 289
G++QRVA+ R P +LDE S A+ V + + + +G T+ V+H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 188 IYPH--TKEDM--------IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
+YPH E+M +K + + + + + +QL ++L+R+ LSG
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSG 136
Query: 238 GEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSH 289
G++QRVA+ R P +LDE S A+ V + + + +G T+ V+H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT-VAD 230
V Q P + + R+ + Y T+ +++ IT + +I +G+DT V +
Sbjct: 98 VGQEPLLFGRSFRENIAYGLTRTPTMEE-ITAVAMESGAHD----FISGFPQGYDTEVGE 152
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFT 286
+ L+ G++Q VA+AR +P+ ILD TSA+ V+ +YE T+
Sbjct: 153 TGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 287 VSHRKSLW--THH 297
++ + SL HH
Sbjct: 213 ITQQLSLAERAHH 225
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 23/116 (19%)
Query: 188 IYPH--TKEDM--------IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
+YPH E+M +K + + + + + +QL ++L+R+ LSG
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSG 136
Query: 238 GEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSH 289
G++QRVA+ R P +LD+ S A+ V + + + +G T+ V+H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
LS G+K+RVA+A + P+ ILDE T+ + ++ + E +E+GIT+ +H
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
+ +A I LSGG K ++A+AR +LDE T+ + + Y GIT
Sbjct: 534 EXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 593
Query: 286 TVSH 289
T+SH
Sbjct: 594 TISH 597
Score = 34.7 bits (78), Expect = 0.070, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
LSGG+K ++ +A + RP +LDE T+ + D G++ + +E + ++H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 950
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
+ +A I LSGG K ++A+AR +LDE T+ + + Y GIT
Sbjct: 540 EXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 599
Query: 286 TVSH 289
T+SH
Sbjct: 600 TISH 603
Score = 34.7 bits (78), Expect = 0.070, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
LSGG+K ++ +A + RP +LDE T+ + D G++ + +E + ++H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G++ + Q ++ GT+++ +I E + I L E + K EK
Sbjct: 99 GRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFA-------EKDNI 151
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G++ + Q ++ GT+++ +I E + I L E + K EK
Sbjct: 99 GRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFA-------EKDNI 151
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
LSGG++QRVA+AR + P + DE T A+ + + + E G T+ V+H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV-SVDVEGSMYEYCR--EVGITLFTVSHRK 291
LSGGE+QRVA+AR + P DE T + S + + M + + E G ++ V+H +
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
Query: 292 SL--WTH 296
L TH
Sbjct: 201 ELAELTH 207
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
+ +A I LSGG K ++A+AR +LDE T+ + + Y GIT
Sbjct: 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 599
Query: 286 TVSH 289
T+SH
Sbjct: 600 TISH 603
Score = 34.7 bits (78), Expect = 0.070, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
LSGG+K ++ +A + RP +LDE T+ + D G++ + +E + ++H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252
+E+M++K + L+ ++L ++ +R+ G LSGG+ + V + R
Sbjct: 127 EEEMVEKAF------KILEFLKLSHLYDRKAGE---------LSGGQMKLVEIGRALMTN 171
Query: 253 PQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
P+ ++DE + V+ + ++ + E+ GIT + HR
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252
+E+M++K + L+ ++L ++ +R+ G LSGG+ + V + R
Sbjct: 127 EEEMVEKAF------KILEFLKLSHLYDRKAGE---------LSGGQMKLVEIGRALMTN 171
Query: 253 PQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
P+ ++DE + V+ + ++ + E+ GIT + HR
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
+I LS GEKQRV +AR +PQ ILDE + +
Sbjct: 158 YIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGL 192
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G++ + Q ++ GT+++ +I E + I L E + K EK
Sbjct: 69 GRISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFA-------EKDNI 121
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 122 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 172
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
G++ + Q ++ GT+++ +I+ + ++ + + A L E + K EK
Sbjct: 69 GRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA-------EKDN 121
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252
+E+M++K + L+ ++L ++ +R+ G LSGG+ + V + R
Sbjct: 127 EEEMVEKAF------KILEFLKLSHLYDRKAGE---------LSGGQMKLVEIGRALMTN 171
Query: 253 PQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
P+ ++D+ + V+ + ++ + E+ GIT + HR
Sbjct: 172 PKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
LSGG++QRVA+AR + P + D+ T A+ + + + E G T+ V+H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
G++ + Q ++ GT+++ +I+ + ++ + + A L E + K EK
Sbjct: 81 GRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA-------EKDN 133
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 134 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 185
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 195 DMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQ 254
++++K L E ++ ++L +L RE I LSGGE QRVA+A
Sbjct: 128 ELLKKADETGKLEEVVKALELENVLERE---------IQHLSGGELQRVAIAAALLRNAT 178
Query: 255 FAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSH 289
F DE +S + + + R E G ++ V H
Sbjct: 179 FYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
++ LSGGE QRVA+A +LDE ++ + V+
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL---------------SGGEKQRVA 244
G+T A+ + +LG + + W V +++L SGGEK+R
Sbjct: 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153
Query: 245 MARLFYHRPQFAILDECTSAVSVDV 269
+ +L P +A+LDE S + +D
Sbjct: 154 ILQLLVLEPTYAVLDETDSGLDIDA 178
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-----DLTEYLQKVQLGYILNR 221
G++ + Q ++ GT+++ +I+ + ++ K + A D+T++
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF-----------A 147
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
E+ + + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-----DLTEYLQKVQLGYILNR 221
G++ + Q ++ GT+++ +I+ + ++ K + A D+T++
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF-----------A 147
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
E+ + + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
G++ + Q ++ GT+++ +I + ++ + + A L E + K EK
Sbjct: 99 GRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFA-------EKDN 151
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 152 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 203
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRVA+AR P ++DE S + V + + + +++ +T V+H
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRVA+AR P ++DE S + V + + + +++ +T V+H
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
LSGG++QRVA+AR + P + D+ T A+ + + + E G T+ V+H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSH 289
LSGG KQRV +A P ILDE TSA+ V + + + + + ITL V+H
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTH 213
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-----DLTEYLQKVQLGYILNR 221
G++ + Q ++ GT+++ +I + ++ K + A D+T++
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKF-----------A 147
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
E+ + + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-----DLTEYLQKVQLGYILNR 221
G++ + Q ++ GT+++ +I + ++ K + A D+T++
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFA----------- 147
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
E+ + + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 234 VLSGGEKQRVAMARLFYH------RPQFAILDECTSAVSV 267
VLSGGE+QRV +AR+ P++ LDE TSA+ +
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
SGGEK+R + ++ P+ ILDE S + +D
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
SGGEK+R + ++ P+ ILDE S + +D
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
LSGGE+Q +A+ R RP+ DE + ++ + ++E +++ G T+ V
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G++ + Q ++ GT+++ +I E + + L + + K E+
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFA-------EQDNT 151
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 152 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 202
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 28/94 (29%)
Query: 121 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVP---QRPY 177
PLF GT + +F + +GT + LWP +VTK P+ Y P QRP
Sbjct: 207 PLFPGTNDEEQLKLIFDI-------MGTPNESLWP----SVTKLPK----YNPNIQQRPP 251
Query: 178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
L QV+ PHTKE + D +L ++L
Sbjct: 252 RDL----RQVLQPHTKEPL------DGNLMDFLH 275
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY---EYCREVGITLFTVSHR 290
LSGG+KQR+A+A + +F LDE S + + ++ E + G + V+H
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 112 VRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFY 171
VRG + L++P+FG T KL PQ G R+ W G T PP +
Sbjct: 56 VRGGIPLVFPVFGKNSTDEHLSKL---PQH-----GLARNSTWEFLGQTKENPPTVQFGL 107
Query: 172 VPQ 174
P+
Sbjct: 108 KPE 110
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 112 VRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFY 171
VRG + L++P+FG T KL PQ G R+ W G T PP +
Sbjct: 56 VRGGIPLVFPVFGKNSTDEHLSKL---PQH-----GLARNSTWEFLGQTKENPPTVQFGL 107
Query: 172 VPQ 174
P+
Sbjct: 108 KPE 110
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQ---FAILDECTSAVSVD 268
G+ + LSGGE QRV +A + R ILDE T+ + VD
Sbjct: 835 GYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 882
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 235 LSGGEKQRVAMARLFYHRPQ---FAILDECTSAVSVD 268
LSGGE QRV +A + R ILDE T+ + VD
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
G++ + Q ++ GT+++ +I+ + ++ + + A L E + K EK
Sbjct: 99 GRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA-------EKDN 151
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LS G++ ++++AR Y +LD + V E ++E C
Sbjct: 152 IVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 203
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G++ + Q ++ GT+++ +I E + I L E + K EK
Sbjct: 99 GRISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFA-------EKDNI 151
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LS G++ ++++AR Y +LD + V E ++E C
Sbjct: 152 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 235 LSGGEKQRVAMARLFYHRPQ---FAILDECTSAVSVD 268
LSGGE QRV +A + R ILDE T+ + VD
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 882
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
LSGGE QRVA+A + F DE +S + +
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 247
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
++ LSGGE QRVA+A +LDE ++ + V+
Sbjct: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 491
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
LSGGE QRVA+A + F DE +S + +
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
++ LSGGE QRVA+A +LDE ++ + V+
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 232 IDVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSV 267
++ LSGGEK A+A LF Y F +LDE +A+ +
Sbjct: 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDI 370
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
LSGG++Q + +AR + +LDE TSA+ +
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDL 161
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
D+ Y++ +QL +L R+ I+ LSGGE QR A+ + DE +S
Sbjct: 201 DVKRYIKILQLENVLKRD---------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251
Query: 265 VSV 267
+ V
Sbjct: 252 LDV 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,504,583
Number of Sequences: 62578
Number of extensions: 339149
Number of successful extensions: 1075
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 112
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)