Query psy11400
Match_columns 298
No_of_seqs 453 out of 2831
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:30:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 2E-50 4.3E-55 397.4 20.0 242 9-298 409-670 (716)
2 COG2274 SunT ABC-type bacterio 100.0 5.7E-48 1.2E-52 390.1 23.6 248 4-298 409-675 (709)
3 TIGR02868 CydC thiol reductant 100.0 2.3E-46 4.9E-51 371.2 24.3 240 6-291 272-529 (529)
4 KOG0060|consensus 100.0 2E-46 4.3E-51 360.1 22.5 270 3-298 349-634 (659)
5 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.1E-45 2.5E-50 376.6 25.2 245 4-298 391-652 (686)
6 PRK11174 cysteine/glutathione 100.0 2.3E-45 4.9E-50 368.3 24.8 234 15-298 298-551 (588)
7 KOG0055|consensus 100.0 3.8E-46 8.2E-51 384.8 19.5 249 5-298 925-1192(1228)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.1E-45 6.6E-50 374.7 24.4 254 4-298 409-679 (710)
9 COG1132 MdlB ABC-type multidru 100.0 4E-45 8.7E-50 365.2 23.0 245 4-298 268-531 (567)
10 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-45 1.2E-49 372.8 23.9 247 4-298 417-681 (711)
11 TIGR00954 3a01203 Peroxysomal 100.0 3E-44 6.5E-49 364.2 28.9 268 4-298 366-646 (659)
12 TIGR01193 bacteriocin_ABC ABC- 100.0 6.1E-45 1.3E-49 372.4 24.0 248 4-298 411-676 (708)
13 KOG0064|consensus 100.0 2.5E-45 5.4E-50 348.9 18.7 270 2-298 393-676 (728)
14 TIGR03375 type_I_sec_LssB type 100.0 1.3E-44 2.8E-49 369.3 24.6 248 4-298 401-667 (694)
15 PRK11176 lipid transporter ATP 100.0 1.5E-44 3.3E-49 361.8 23.4 247 4-298 281-546 (582)
16 TIGR02857 CydD thiol reductant 100.0 8.6E-44 1.9E-48 352.8 24.5 244 6-298 262-524 (529)
17 TIGR02203 MsbA_lipidA lipid A 100.0 6.5E-44 1.4E-48 356.3 23.5 247 4-298 270-535 (571)
18 PRK10790 putative multidrug tr 100.0 9.1E-44 2E-48 357.0 24.5 241 6-298 283-542 (592)
19 PRK13657 cyclic beta-1,2-gluca 100.0 2.4E-43 5.1E-48 353.8 24.4 247 4-298 272-537 (588)
20 PTZ00265 multidrug resistance 100.0 1.2E-43 2.6E-48 383.7 23.4 250 6-298 1101-1426(1466)
21 PRK11160 cysteine/glutathione 100.0 3.9E-43 8.4E-48 351.4 24.7 233 18-298 291-541 (574)
22 KOG0057|consensus 100.0 4.1E-43 8.9E-48 336.1 22.1 244 4-298 291-553 (591)
23 TIGR02204 MsbA_rel ABC transpo 100.0 1.2E-42 2.7E-47 347.5 24.1 248 5-298 275-542 (576)
24 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-42 3.6E-47 353.8 23.8 247 4-298 394-659 (694)
25 COG4178 ABC-type uncharacteriz 100.0 3.8E-42 8.2E-47 337.6 24.4 252 3-298 321-581 (604)
26 KOG0055|consensus 100.0 1.7E-43 3.7E-48 365.2 14.7 238 15-298 298-555 (1228)
27 TIGR01842 type_I_sec_PrtD type 100.0 7.2E-42 1.6E-46 340.3 24.6 244 4-297 257-520 (544)
28 COG4988 CydD ABC-type transpor 100.0 2.2E-42 4.8E-47 334.6 19.2 235 16-298 269-522 (559)
29 PRK10789 putative multidrug tr 100.0 1.3E-41 2.7E-46 340.2 24.7 246 4-298 253-517 (569)
30 KOG0056|consensus 100.0 5.3E-43 1.2E-47 330.7 13.5 248 3-298 474-740 (790)
31 PLN03232 ABC transporter C fam 100.0 1.1E-41 2.4E-46 370.5 23.7 239 15-298 1180-1437(1495)
32 TIGR01192 chvA glucan exporter 100.0 4E-41 8.7E-46 337.5 25.5 246 5-298 273-537 (585)
33 PLN03130 ABC transporter C fam 100.0 2E-41 4.4E-46 369.3 24.1 239 15-298 1183-1440(1622)
34 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-41 5.8E-46 367.9 24.5 245 9-298 1224-1487(1522)
35 COG4987 CydC ABC-type transpor 100.0 4.4E-42 9.6E-47 328.7 15.4 234 16-298 287-540 (573)
36 COG1126 GlnQ ABC-type polar am 100.0 4E-42 8.7E-47 297.1 12.1 180 80-296 2-201 (240)
37 PTZ00243 ABC transporter; Prov 100.0 1.7E-40 3.7E-45 361.4 26.0 256 9-298 1221-1512(1560)
38 COG4618 ArpD ABC-type protease 100.0 4.2E-40 9.1E-45 312.9 20.7 238 10-297 281-538 (580)
39 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-40 3.3E-45 297.0 16.6 181 80-297 4-205 (254)
40 COG1135 AbcC ABC-type metal io 100.0 3.6E-41 7.9E-46 304.5 12.5 184 80-296 1-207 (339)
41 PLN03232 ABC transporter C fam 100.0 2.8E-39 6E-44 351.7 25.0 243 5-298 555-807 (1495)
42 COG1116 TauB ABC-type nitrate/ 100.0 4.1E-40 8.8E-45 291.2 14.8 178 80-295 3-195 (248)
43 COG2884 FtsE Predicted ATPase 100.0 4E-40 8.6E-45 279.3 12.0 180 80-296 1-202 (223)
44 TIGR01271 CFTR_protein cystic 100.0 6.7E-39 1.4E-43 348.4 24.6 250 14-298 1148-1419(1490)
45 COG1136 SalX ABC-type antimicr 100.0 7E-40 1.5E-44 288.7 13.5 184 81-298 2-210 (226)
46 PLN03130 ABC transporter C fam 100.0 9.4E-39 2E-43 348.5 24.6 241 6-298 556-807 (1622)
47 COG5265 ATM1 ABC-type transpor 100.0 1.7E-39 3.7E-44 302.9 15.3 246 4-297 199-464 (497)
48 PTZ00265 multidrug resistance 100.0 1.4E-38 3E-43 344.5 22.2 242 16-298 333-647 (1466)
49 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.6E-38 5.7E-43 315.4 22.0 247 5-297 268-537 (555)
50 PRK10522 multidrug transporter 100.0 9.9E-38 2.2E-42 310.8 21.9 225 16-298 274-517 (547)
51 COG1117 PstB ABC-type phosphat 100.0 9.2E-39 2E-43 275.5 10.9 182 79-294 6-211 (253)
52 COG1120 FepC ABC-type cobalami 100.0 3.9E-38 8.4E-43 282.7 14.4 181 80-297 2-205 (258)
53 COG1125 OpuBA ABC-type proline 100.0 2.4E-38 5.2E-43 279.2 10.7 178 80-295 1-200 (309)
54 COG1124 DppF ABC-type dipeptid 100.0 1.2E-37 2.7E-42 273.7 15.1 181 80-296 3-207 (252)
55 COG3638 ABC-type phosphate/pho 100.0 4.9E-38 1.1E-42 274.8 12.4 182 80-297 3-214 (258)
56 COG1127 Ttg2A ABC-type transpo 100.0 5.4E-38 1.2E-42 275.2 12.5 180 79-295 7-210 (263)
57 COG1122 CbiO ABC-type cobalt t 100.0 7.4E-38 1.6E-42 279.5 12.9 180 80-296 3-204 (235)
58 COG3842 PotA ABC-type spermidi 100.0 1E-37 2.2E-42 291.2 12.0 179 79-294 4-200 (352)
59 TIGR00960 3a0501s02 Type II (G 100.0 6.9E-37 1.5E-41 270.1 13.6 180 80-295 1-202 (216)
60 COG3839 MalK ABC-type sugar tr 100.0 5.6E-37 1.2E-41 284.9 13.4 177 80-294 3-197 (338)
61 TIGR02314 ABC_MetN D-methionin 100.0 9E-37 1.9E-41 287.1 14.5 181 80-296 1-206 (343)
62 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.4E-36 1.4E-40 273.8 18.3 182 80-296 2-202 (275)
63 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-35 5.2E-40 321.4 25.8 236 12-297 581-828 (1522)
64 cd03226 ABC_cobalt_CbiO_domain 100.0 4.2E-36 9.1E-41 263.2 15.2 173 82-295 1-190 (205)
65 PRK11650 ugpC glycerol-3-phosp 100.0 2.7E-36 5.9E-41 285.5 14.4 179 80-295 3-199 (356)
66 cd03261 ABC_Org_Solvent_Resist 100.0 3.1E-36 6.7E-41 269.3 13.8 178 81-295 1-201 (235)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.2E-36 7E-41 266.0 13.8 178 81-295 1-205 (218)
68 cd03252 ABCC_Hemolysin The ABC 100.0 1.6E-35 3.4E-40 265.0 18.2 182 81-295 1-201 (237)
69 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-35 4.3E-40 258.7 18.2 180 81-296 1-193 (204)
70 cd03244 ABCC_MRP_domain2 Domai 100.0 2.4E-35 5.2E-40 261.0 18.6 183 80-296 2-203 (221)
71 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.1E-36 1.1E-40 265.4 14.1 178 81-295 1-196 (220)
72 cd03245 ABCC_bacteriocin_expor 100.0 3.1E-35 6.7E-40 260.1 18.6 183 80-295 2-203 (220)
73 TIGR02673 FtsE cell division A 100.0 5.4E-36 1.2E-40 263.9 13.5 179 80-295 1-201 (214)
74 cd03259 ABC_Carb_Solutes_like 100.0 4.7E-36 1E-40 264.2 13.1 177 81-295 1-195 (213)
75 PRK11629 lolD lipoprotein tran 100.0 8.9E-36 1.9E-40 266.2 15.0 181 80-296 5-211 (233)
76 cd03254 ABCC_Glucan_exporter_l 100.0 2.3E-35 5E-40 262.4 17.4 183 80-296 2-203 (229)
77 cd03235 ABC_Metallic_Cations A 100.0 7.9E-36 1.7E-40 262.8 14.1 177 82-295 1-196 (213)
78 cd03266 ABC_NatA_sodium_export 100.0 9.8E-36 2.1E-40 262.9 13.6 182 80-295 1-200 (218)
79 COG1118 CysA ABC-type sulfate/ 100.0 5.7E-36 1.2E-40 270.3 12.1 179 80-295 2-202 (345)
80 PRK13647 cbiO cobalt transport 100.0 1.3E-35 2.9E-40 271.5 14.5 179 80-295 4-202 (274)
81 cd03292 ABC_FtsE_transporter F 100.0 9.5E-36 2.1E-40 262.1 12.9 178 81-295 1-200 (214)
82 TIGR02315 ABC_phnC phosphonate 100.0 2.3E-35 4.9E-40 264.7 15.6 180 80-295 1-210 (243)
83 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-35 3.9E-40 261.8 14.3 180 81-296 2-207 (221)
84 cd03296 ABC_CysA_sulfate_impor 100.0 2.2E-35 4.8E-40 264.6 15.1 179 80-295 2-201 (239)
85 PRK11153 metN DL-methionine tr 100.0 1.6E-35 3.4E-40 279.2 14.5 180 80-295 1-205 (343)
86 cd03223 ABCD_peroxisomal_ALDP 100.0 4.5E-35 9.7E-40 249.1 15.8 149 81-296 1-153 (166)
87 PRK11247 ssuB aliphatic sulfon 100.0 6.1E-35 1.3E-39 264.9 17.5 173 79-295 11-198 (257)
88 PRK11432 fbpC ferric transport 100.0 2E-35 4.3E-40 279.0 14.8 179 79-295 5-201 (351)
89 cd03253 ABCC_ATM1_transporter 100.0 7.5E-35 1.6E-39 260.3 17.7 182 81-296 1-201 (236)
90 PRK13637 cbiO cobalt transport 100.0 2.8E-35 6.1E-40 271.1 14.9 182 81-295 3-209 (287)
91 cd03268 ABC_BcrA_bacitracin_re 100.0 3.8E-35 8.2E-40 257.5 14.8 173 81-295 1-190 (208)
92 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-35 5.8E-40 259.3 13.8 177 81-295 1-195 (213)
93 KOG0054|consensus 100.0 5.6E-35 1.2E-39 307.8 18.6 240 14-298 1083-1341(1381)
94 PRK10908 cell division protein 100.0 3.8E-35 8.2E-40 260.2 14.7 180 80-296 1-202 (222)
95 cd03256 ABC_PhnC_transporter A 100.0 4.4E-35 9.5E-40 262.4 14.9 179 81-295 1-209 (241)
96 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-35 4.5E-40 279.2 13.2 178 80-295 4-199 (353)
97 cd03225 ABC_cobalt_CbiO_domain 100.0 2.6E-35 5.6E-40 259.0 12.8 178 83-296 2-199 (211)
98 cd03260 ABC_PstB_phosphate_tra 100.0 4E-35 8.7E-40 260.7 14.2 179 81-295 1-204 (227)
99 cd03258 ABC_MetN_methionine_tr 100.0 3E-35 6.6E-40 262.5 13.4 179 80-295 1-205 (233)
100 PRK14257 phosphate ABC transpo 100.0 5.4E-35 1.2E-39 274.0 15.7 188 78-296 78-289 (329)
101 cd03219 ABC_Mj1267_LivG_branch 100.0 2.9E-35 6.3E-40 262.9 13.2 179 81-296 1-208 (236)
102 cd03262 ABC_HisP_GlnQ_permease 100.0 3.8E-35 8.3E-40 258.1 13.5 178 81-295 1-199 (213)
103 PRK13651 cobalt transporter AT 100.0 4E-35 8.6E-40 272.3 14.2 183 80-295 2-229 (305)
104 cd03251 ABCC_MsbA MsbA is an e 100.0 2E-34 4.4E-39 257.2 18.1 183 81-296 1-202 (234)
105 cd03263 ABC_subfamily_A The AB 100.0 4E-35 8.6E-40 259.4 13.4 179 81-295 1-196 (220)
106 PRK10584 putative ABC transpor 100.0 6.7E-35 1.5E-39 259.4 14.9 182 79-296 5-212 (228)
107 PRK13650 cbiO cobalt transport 100.0 6.2E-35 1.3E-39 267.8 15.0 181 80-296 4-206 (279)
108 PRK11248 tauB taurine transpor 100.0 7.2E-35 1.6E-39 264.1 15.2 178 80-295 1-193 (255)
109 PRK13643 cbiO cobalt transport 100.0 6.4E-35 1.4E-39 268.9 14.8 183 80-295 1-208 (288)
110 COG1131 CcmA ABC-type multidru 100.0 4.2E-35 9E-40 270.6 13.6 180 80-296 4-202 (293)
111 PRK13631 cbiO cobalt transport 100.0 8E-35 1.7E-39 271.9 15.5 184 79-295 20-240 (320)
112 PRK10851 sulfate/thiosulfate t 100.0 8E-35 1.7E-39 275.1 15.4 179 80-295 2-201 (353)
113 PRK11831 putative ABC transpor 100.0 5.6E-35 1.2E-39 266.7 13.8 180 79-295 6-208 (269)
114 cd03265 ABC_DrrA DrrA is the A 100.0 5.1E-35 1.1E-39 259.0 13.0 177 81-295 1-196 (220)
115 PRK10247 putative ABC transpor 100.0 1.6E-34 3.4E-39 257.0 16.1 178 79-296 6-203 (225)
116 PRK14250 phosphate ABC transpo 100.0 2.1E-34 4.5E-39 258.8 16.9 174 80-295 3-196 (241)
117 PRK13537 nodulation ABC transp 100.0 6.2E-35 1.4E-39 271.2 13.9 179 79-295 6-202 (306)
118 PRK13634 cbiO cobalt transport 100.0 6.9E-35 1.5E-39 268.9 14.1 182 81-295 3-210 (290)
119 TIGR03258 PhnT 2-aminoethylpho 100.0 4.7E-35 1E-39 277.4 13.2 179 79-295 4-203 (362)
120 cd03264 ABC_drug_resistance_li 100.0 5.3E-35 1.2E-39 257.2 12.6 176 81-295 1-193 (211)
121 cd03288 ABCC_SUR2 The SUR doma 100.0 4.9E-34 1.1E-38 258.7 19.3 186 77-296 16-220 (257)
122 TIGR01288 nodI ATP-binding ABC 100.0 6.5E-35 1.4E-39 270.7 13.8 178 80-295 4-199 (303)
123 cd03290 ABCC_SUR1_N The SUR do 100.0 4.2E-34 9.1E-39 252.8 18.2 180 82-296 2-207 (218)
124 TIGR00972 3a0107s01c2 phosphat 100.0 9.9E-35 2.1E-39 261.6 14.2 179 80-295 1-207 (247)
125 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-34 2.6E-39 256.5 14.5 175 81-295 1-196 (222)
126 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3E-34 6.4E-39 256.9 17.1 182 81-295 1-202 (238)
127 PRK13636 cbiO cobalt transport 100.0 1.2E-34 2.6E-39 266.5 14.8 179 80-295 5-206 (283)
128 cd03257 ABC_NikE_OppD_transpor 100.0 1.5E-34 3.2E-39 256.8 14.9 181 80-295 1-210 (228)
129 PRK13646 cbiO cobalt transport 100.0 1E-34 2.2E-39 267.2 14.2 180 80-295 2-210 (286)
130 cd03231 ABC_CcmA_heme_exporter 100.0 3E-34 6.4E-39 251.0 16.4 170 81-294 1-188 (201)
131 cd03269 ABC_putative_ATPase Th 100.0 9.3E-35 2E-39 255.4 13.3 177 81-295 1-192 (210)
132 PRK09452 potA putrescine/sperm 100.0 1.1E-34 2.3E-39 276.1 14.7 179 79-295 13-209 (375)
133 PRK13635 cbiO cobalt transport 100.0 1.7E-34 3.8E-39 264.9 15.6 180 80-295 5-205 (279)
134 PRK11000 maltose/maltodextrin 100.0 1E-34 2.2E-39 276.1 14.5 178 80-295 3-198 (369)
135 cd03248 ABCC_TAP TAP, the Tran 100.0 3.7E-34 8.1E-39 254.3 17.2 186 78-296 9-214 (226)
136 PRK13538 cytochrome c biogenes 100.0 2.2E-34 4.7E-39 252.3 15.3 176 80-296 1-194 (204)
137 PRK11264 putative amino-acid A 100.0 1.2E-34 2.6E-39 261.2 13.7 179 80-295 3-208 (250)
138 PRK13540 cytochrome c biogenes 100.0 4E-34 8.7E-39 249.9 16.6 174 80-296 1-192 (200)
139 PRK13644 cbiO cobalt transport 100.0 1.7E-34 3.8E-39 264.2 14.8 179 80-295 1-200 (274)
140 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-34 5.3E-39 275.5 16.3 180 80-296 3-204 (402)
141 cd03218 ABC_YhbG The ABC trans 100.0 1.3E-34 2.8E-39 258.1 13.1 177 81-295 1-197 (232)
142 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.6E-34 3.4E-39 259.5 13.7 178 81-295 1-200 (242)
143 PRK09493 glnQ glutamine ABC tr 100.0 2E-34 4.3E-39 258.4 14.4 179 80-295 1-200 (240)
144 PRK11607 potG putrescine trans 100.0 1.4E-34 3.1E-39 275.5 14.2 179 79-295 18-214 (377)
145 PRK10619 histidine/lysine/argi 100.0 2.2E-34 4.7E-39 260.9 14.5 181 79-296 4-217 (257)
146 PRK10895 lipopolysaccharide AB 100.0 2.9E-34 6.2E-39 257.5 15.0 179 80-295 3-201 (241)
147 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.1E-34 4.6E-39 257.7 14.1 178 80-295 1-197 (236)
148 PRK13632 cbiO cobalt transport 100.0 3.1E-34 6.7E-39 262.0 15.1 181 79-295 6-207 (271)
149 PRK09544 znuC high-affinity zi 100.0 7.6E-34 1.7E-38 256.9 17.3 171 80-295 4-185 (251)
150 PRK13641 cbiO cobalt transport 100.0 2.7E-34 5.9E-39 264.5 14.6 180 80-295 2-209 (287)
151 TIGR03608 L_ocin_972_ABC putat 100.0 1.6E-34 3.5E-39 252.9 12.3 175 83-295 1-198 (206)
152 PRK14273 phosphate ABC transpo 100.0 3.2E-34 6.9E-39 259.3 14.5 184 79-295 6-213 (254)
153 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.3E-34 1.1E-38 250.8 15.2 175 81-295 1-193 (211)
154 PRK11124 artP arginine transpo 100.0 3.3E-34 7.2E-39 257.3 14.2 179 80-295 2-205 (242)
155 PRK13649 cbiO cobalt transport 100.0 3.3E-34 7.1E-39 262.9 14.4 183 80-295 2-209 (280)
156 TIGR02769 nickel_nikE nickel i 100.0 3.2E-34 6.8E-39 261.1 14.1 181 80-295 2-215 (265)
157 TIGR03411 urea_trans_UrtD urea 100.0 7.3E-34 1.6E-38 254.9 16.2 180 80-296 2-207 (242)
158 PRK13633 cobalt transporter AT 100.0 5E-34 1.1E-38 261.9 15.4 186 79-296 3-210 (280)
159 PRK14242 phosphate transporter 100.0 4.1E-34 8.8E-39 258.3 14.3 184 79-295 5-212 (253)
160 PRK13536 nodulation factor exp 100.0 3.3E-34 7.1E-39 269.7 14.2 179 79-295 40-236 (340)
161 PRK13539 cytochrome c biogenes 100.0 7.1E-34 1.5E-38 249.8 15.4 175 80-296 2-192 (207)
162 PRK13639 cbiO cobalt transport 100.0 3.6E-34 7.8E-39 262.2 14.0 179 80-295 1-201 (275)
163 PRK13652 cbiO cobalt transport 100.0 5E-34 1.1E-38 261.5 14.9 179 80-295 3-202 (277)
164 TIGR01166 cbiO cobalt transpor 100.0 2.5E-34 5.5E-39 249.0 12.2 162 104-294 7-190 (190)
165 TIGR03005 ectoine_ehuA ectoine 100.0 3.9E-34 8.5E-39 258.4 13.8 178 81-295 1-211 (252)
166 TIGR02982 heterocyst_DevA ABC 100.0 4.2E-34 9.2E-39 253.2 13.7 180 81-295 2-206 (220)
167 TIGR01189 ccmA heme ABC export 100.0 6.8E-34 1.5E-38 248.0 14.7 173 81-295 1-191 (198)
168 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.9E-33 4E-38 246.8 17.6 167 79-295 5-188 (207)
169 PRK13543 cytochrome c biogenes 100.0 8.1E-34 1.8E-38 250.6 15.3 176 79-295 10-201 (214)
170 TIGR01277 thiQ thiamine ABC tr 100.0 7.7E-34 1.7E-38 250.4 15.1 175 81-295 1-193 (213)
171 PRK10744 pstB phosphate transp 100.0 6.7E-34 1.5E-38 258.2 15.1 185 78-295 11-219 (260)
172 PRK15079 oligopeptide ABC tran 100.0 4.8E-34 1.1E-38 267.7 14.4 190 79-296 7-227 (331)
173 TIGR01271 CFTR_protein cystic 100.0 4.7E-33 1E-37 302.9 24.2 239 10-296 340-613 (1490)
174 PRK13638 cbiO cobalt transport 100.0 4.5E-34 9.8E-39 260.9 13.7 178 80-295 1-200 (271)
175 PRK13640 cbiO cobalt transport 100.0 1.4E-33 3.1E-38 259.1 17.2 182 79-296 4-209 (282)
176 PRK13645 cbiO cobalt transport 100.0 5.5E-34 1.2E-38 262.7 14.4 181 79-295 5-215 (289)
177 PRK11231 fecE iron-dicitrate t 100.0 1.2E-33 2.6E-38 255.8 16.2 179 80-295 2-202 (255)
178 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.5E-34 7.6E-39 261.5 12.4 176 82-295 26-225 (269)
179 KOG0054|consensus 100.0 5E-33 1.1E-37 293.2 22.4 241 8-298 460-710 (1381)
180 PRK10575 iron-hydroxamate tran 100.0 1.5E-33 3.2E-38 256.7 16.0 180 79-295 10-212 (265)
181 COG3840 ThiQ ABC-type thiamine 100.0 6.2E-34 1.3E-38 240.2 12.4 176 81-296 2-195 (231)
182 PRK10771 thiQ thiamine transpo 100.0 1.8E-33 3.9E-38 251.1 16.2 176 80-295 1-194 (232)
183 TIGR03410 urea_trans_UrtE urea 100.0 8E-34 1.7E-38 252.8 13.8 174 81-295 1-196 (230)
184 PRK14235 phosphate transporter 100.0 1.3E-33 2.8E-38 257.5 15.4 185 78-295 17-226 (267)
185 PRK11308 dppF dipeptide transp 100.0 9.5E-34 2.1E-38 265.4 15.0 190 79-296 4-220 (327)
186 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-33 2.5E-38 262.1 15.4 178 80-295 2-196 (301)
187 PRK13548 hmuV hemin importer A 100.0 2E-33 4.2E-38 255.0 16.3 178 80-295 2-205 (258)
188 TIGR01186 proV glycine betaine 100.0 5.2E-34 1.1E-38 270.0 12.9 163 104-295 8-194 (363)
189 PRK14269 phosphate ABC transpo 100.0 1.2E-33 2.7E-38 254.4 14.8 183 80-295 2-205 (246)
190 PRK13642 cbiO cobalt transport 100.0 1.3E-33 2.8E-38 258.7 15.1 180 80-295 4-205 (277)
191 PRK11300 livG leucine/isoleuci 100.0 1.9E-33 4E-38 254.2 15.7 179 80-295 5-218 (255)
192 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-33 2.7E-38 250.6 14.2 185 80-295 1-213 (224)
193 TIGR03740 galliderm_ABC gallid 100.0 2E-33 4.3E-38 249.3 15.3 173 81-295 1-188 (223)
194 PRK13648 cbiO cobalt transport 100.0 2E-33 4.4E-38 256.3 15.5 181 79-295 6-207 (269)
195 PRK14251 phosphate ABC transpo 100.0 1.5E-33 3.3E-38 254.3 14.2 183 80-295 4-210 (251)
196 PRK11614 livF leucine/isoleuci 100.0 2.1E-33 4.5E-38 251.4 14.9 176 80-295 5-201 (237)
197 COG4555 NatA ABC-type Na+ tran 100.0 3.1E-34 6.7E-39 245.5 9.0 179 80-295 1-197 (245)
198 PRK14248 phosphate ABC transpo 100.0 2.5E-33 5.3E-38 255.6 15.3 184 79-295 20-227 (268)
199 TIGR03873 F420-0_ABC_ATP propo 100.0 2.7E-33 5.8E-38 253.6 15.4 178 81-295 2-201 (256)
200 PRK15056 manganese/iron transp 100.0 3.5E-33 7.5E-38 255.2 16.3 181 79-295 5-206 (272)
201 PRK14259 phosphate ABC transpo 100.0 2.5E-33 5.5E-38 255.8 15.4 183 78-295 11-217 (269)
202 COG4181 Predicted ABC-type tra 100.0 1.2E-33 2.5E-38 236.4 11.9 184 80-297 6-213 (228)
203 PRK10253 iron-enterobactin tra 100.0 2.6E-33 5.6E-38 255.1 15.3 180 79-295 6-208 (265)
204 PRK13541 cytochrome c biogenes 100.0 4.5E-33 9.6E-38 242.4 15.7 174 80-297 1-189 (195)
205 PRK14240 phosphate transporter 100.0 3.3E-33 7.2E-38 252.0 15.1 183 80-295 3-209 (250)
206 PRK15112 antimicrobial peptide 100.0 2.4E-33 5.2E-38 255.7 14.3 190 79-296 3-215 (267)
207 COG1137 YhbG ABC-type (unclass 100.0 1.6E-33 3.6E-38 240.8 12.2 176 80-292 4-200 (243)
208 PRK11144 modC molybdate transp 100.0 4.9E-33 1.1E-37 263.1 16.7 169 80-295 1-193 (352)
209 PRK14249 phosphate ABC transpo 100.0 4.7E-33 1E-37 251.2 15.8 184 80-296 4-211 (251)
210 PRK14268 phosphate ABC transpo 100.0 2.4E-33 5.2E-38 254.3 14.0 183 79-295 11-217 (258)
211 PRK14237 phosphate transporter 100.0 3.3E-33 7.3E-38 254.7 15.0 185 78-295 18-226 (267)
212 PRK14239 phosphate transporter 100.0 3.3E-33 7.1E-38 252.2 14.6 183 80-295 5-211 (252)
213 PRK14245 phosphate ABC transpo 100.0 3.2E-33 6.9E-38 252.2 14.3 183 80-295 3-209 (250)
214 PRK10070 glycine betaine trans 100.0 3.1E-33 6.8E-38 267.7 14.9 163 104-295 43-229 (400)
215 PRK14256 phosphate ABC transpo 100.0 4.9E-33 1.1E-37 251.2 15.3 184 79-295 3-211 (252)
216 PRK14238 phosphate transporter 100.0 3.2E-33 6.9E-38 255.4 14.2 184 79-295 23-230 (271)
217 TIGR01978 sufC FeS assembly AT 100.0 3.2E-33 7E-38 250.6 13.7 179 81-296 1-209 (243)
218 PRK14247 phosphate ABC transpo 100.0 4.1E-33 9E-38 251.3 14.5 183 80-295 3-209 (250)
219 PRK09984 phosphonate/organopho 100.0 6.1E-33 1.3E-37 252.1 15.5 179 80-295 4-217 (262)
220 PRK14254 phosphate ABC transpo 100.0 7.2E-33 1.6E-37 254.9 15.9 184 78-296 37-244 (285)
221 COG1123 ATPase components of v 100.0 3.7E-33 7.9E-38 271.2 14.6 191 78-296 278-495 (539)
222 cd03234 ABCG_White The White s 100.0 4.7E-33 1E-37 247.5 14.2 177 80-291 3-203 (226)
223 PRK11701 phnK phosphonate C-P 100.0 5.7E-33 1.2E-37 251.7 15.0 179 80-295 6-216 (258)
224 cd03246 ABCC_Protease_Secretio 100.0 7.8E-33 1.7E-37 236.6 15.0 143 81-296 1-161 (173)
225 PRK14270 phosphate ABC transpo 100.0 5.4E-33 1.2E-37 250.8 14.7 183 80-295 4-210 (251)
226 PRK14274 phosphate ABC transpo 100.0 4.7E-33 1E-37 252.4 14.3 184 79-295 11-218 (259)
227 PRK14253 phosphate ABC transpo 100.0 6.7E-33 1.5E-37 249.8 14.7 184 80-296 3-209 (249)
228 cd03247 ABCC_cytochrome_bd The 100.0 8.7E-33 1.9E-37 237.3 14.7 146 81-296 1-162 (178)
229 PRK14262 phosphate ABC transpo 100.0 6.3E-33 1.4E-37 250.1 14.5 183 80-295 3-209 (250)
230 PRK11022 dppD dipeptide transp 100.0 4E-33 8.6E-38 261.1 13.6 186 80-295 3-218 (326)
231 TIGR00968 3a0106s01 sulfate AB 100.0 5.3E-33 1.1E-37 249.1 13.6 177 81-295 1-195 (237)
232 TIGR01188 drrA daunorubicin re 100.0 2.5E-33 5.4E-38 259.9 11.8 163 104-295 8-188 (302)
233 PRK14275 phosphate ABC transpo 100.0 6.8E-33 1.5E-37 255.2 14.6 185 78-295 37-245 (286)
234 cd03300 ABC_PotA_N PotA is an 100.0 4.4E-33 9.6E-38 248.7 13.0 177 81-295 1-195 (232)
235 PRK14267 phosphate ABC transpo 100.0 5.5E-33 1.2E-37 250.9 13.7 183 80-295 4-212 (253)
236 PRK14241 phosphate transporter 100.0 7.1E-33 1.5E-37 251.1 14.4 183 80-295 4-211 (258)
237 cd03297 ABC_ModC_molybdenum_tr 100.0 7.9E-33 1.7E-37 244.0 13.3 170 82-295 3-196 (214)
238 PRK14244 phosphate ABC transpo 100.0 8.7E-33 1.9E-37 249.5 13.8 182 81-295 6-212 (251)
239 PRK14236 phosphate transporter 100.0 1.3E-32 2.7E-37 251.5 14.9 185 78-295 23-231 (272)
240 PRK14260 phosphate ABC transpo 100.0 8.3E-33 1.8E-37 250.9 13.5 183 80-295 7-213 (259)
241 cd03291 ABCC_CFTR1 The CFTR su 100.0 7E-32 1.5E-36 247.9 19.8 179 78-296 37-224 (282)
242 PRK10762 D-ribose transporter 100.0 9.8E-33 2.1E-37 272.3 15.0 180 80-296 4-206 (501)
243 cd03299 ABC_ModC_like Archeal 100.0 1.2E-32 2.6E-37 246.4 13.8 176 81-295 1-194 (235)
244 PRK14255 phosphate ABC transpo 100.0 1.5E-32 3.2E-37 248.0 14.5 184 79-295 4-211 (252)
245 PRK10419 nikE nickel transport 100.0 1.4E-32 3E-37 250.8 14.4 180 80-295 3-216 (268)
246 PRK09473 oppD oligopeptide tra 100.0 1E-32 2.2E-37 258.7 13.9 186 79-296 11-227 (330)
247 PRK14243 phosphate transporter 100.0 2E-32 4.4E-37 249.2 15.2 182 80-296 10-215 (264)
248 PRK15439 autoinducer 2 ABC tra 100.0 2.3E-32 5E-37 270.2 16.7 174 80-295 11-204 (510)
249 TIGR02142 modC_ABC molybdenum 100.0 1.8E-32 3.9E-37 259.4 15.3 169 85-295 4-196 (354)
250 PRK14261 phosphate ABC transpo 100.0 2E-32 4.4E-37 247.3 15.0 183 80-295 6-212 (253)
251 PRK14271 phosphate ABC transpo 100.0 1.8E-32 3.8E-37 251.2 14.7 184 79-295 20-226 (276)
252 PRK13549 xylose transporter AT 100.0 1.3E-32 2.8E-37 271.7 14.7 179 80-295 5-207 (506)
253 PRK14252 phosphate ABC transpo 100.0 2.5E-32 5.3E-37 248.6 15.1 186 77-295 13-224 (265)
254 TIGR02323 CP_lyasePhnK phospho 100.0 2.2E-32 4.8E-37 247.0 14.6 179 80-295 3-213 (253)
255 PRK15093 antimicrobial peptide 100.0 2E-32 4.4E-37 256.8 14.6 185 80-296 3-224 (330)
256 PRK11288 araG L-arabinose tran 100.0 1.8E-32 4E-37 270.3 15.0 179 80-295 4-204 (501)
257 PRK13547 hmuV hemin importer A 100.0 2.9E-32 6.3E-37 249.3 15.2 179 80-295 1-219 (272)
258 PRK14266 phosphate ABC transpo 100.0 3.1E-32 6.6E-37 245.7 14.7 184 80-296 3-210 (250)
259 PRK14258 phosphate ABC transpo 100.0 2.9E-32 6.4E-37 247.6 14.6 183 80-295 7-215 (261)
260 PRK09700 D-allose transporter 100.0 2.8E-32 6.1E-37 269.5 15.4 179 80-295 5-209 (510)
261 PRK11819 putative ABC transpor 100.0 4.3E-32 9.3E-37 270.8 16.8 180 80-296 6-225 (556)
262 PRK14246 phosphate ABC transpo 100.0 2.9E-32 6.3E-37 247.3 14.0 185 78-295 8-216 (257)
263 TIGR03415 ABC_choXWV_ATP choli 100.0 1.5E-32 3.3E-37 261.3 12.6 163 104-295 39-229 (382)
264 PRK14272 phosphate ABC transpo 100.0 2.8E-32 6.1E-37 246.1 13.7 183 80-295 4-211 (252)
265 PRK10261 glutathione transport 100.0 2.7E-32 5.8E-37 275.5 15.0 190 79-296 312-529 (623)
266 PRK14265 phosphate ABC transpo 100.0 5.5E-32 1.2E-36 247.7 15.7 183 78-295 18-224 (274)
267 PRK10418 nikD nickel transport 100.0 6.3E-32 1.4E-36 244.5 15.7 175 80-295 4-205 (254)
268 COG4175 ProV ABC-type proline/ 100.0 1.1E-32 2.3E-37 249.8 9.7 163 104-295 43-229 (386)
269 PRK14264 phosphate ABC transpo 100.0 7.7E-32 1.7E-36 250.3 15.6 185 78-295 43-263 (305)
270 COG4619 ABC-type uncharacteriz 100.0 7.7E-33 1.7E-37 230.8 7.8 162 104-296 18-200 (223)
271 PRK15064 ABC transporter ATP-b 100.0 7.7E-32 1.7E-36 267.6 16.4 179 80-295 1-216 (530)
272 PRK10261 glutathione transport 100.0 4.3E-32 9.4E-37 274.0 14.5 183 78-295 10-233 (623)
273 PTZ00243 ABC transporter; Prov 100.0 3.8E-31 8.2E-36 288.5 22.7 166 103-297 674-848 (1560)
274 TIGR03269 met_CoM_red_A2 methy 100.0 5.3E-32 1.1E-36 268.2 14.2 181 79-296 278-493 (520)
275 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-31 3.1E-36 228.4 14.5 143 81-296 1-160 (171)
276 PRK10982 galactose/methyl gala 100.0 6.3E-32 1.4E-36 265.9 14.1 177 83-296 1-199 (491)
277 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-31 2.7E-36 229.1 14.1 141 81-295 1-159 (173)
278 PRK15064 ABC transporter ATP-b 100.0 2.1E-31 4.5E-36 264.5 17.5 175 79-296 318-500 (530)
279 TIGR02633 xylG D-xylose ABC tr 100.0 1E-31 2.2E-36 265.0 15.0 179 81-296 2-206 (500)
280 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-31 3.7E-36 266.4 16.6 189 80-296 4-223 (552)
281 TIGR03269 met_CoM_red_A2 methy 100.0 6.1E-32 1.3E-36 267.7 13.3 177 81-295 1-233 (520)
282 COG4525 TauB ABC-type taurine 100.0 3.2E-32 6.9E-37 232.2 9.4 180 80-295 3-197 (259)
283 TIGR01184 ntrCD nitrate transp 100.0 7.7E-32 1.7E-36 240.6 12.2 163 105-295 1-179 (230)
284 COG0444 DppD ABC-type dipeptid 100.0 7E-32 1.5E-36 246.4 11.9 186 81-296 2-219 (316)
285 cd03267 ABC_NatA_like Similar 100.0 6.8E-32 1.5E-36 241.8 11.6 163 104-295 36-218 (236)
286 cd03229 ABC_Class3 This class 100.0 2.2E-31 4.9E-36 228.6 14.0 143 81-295 1-165 (178)
287 PRK15134 microcin C ABC transp 100.0 1.4E-31 3E-36 265.7 14.6 181 80-295 5-221 (529)
288 PRK14263 phosphate ABC transpo 100.0 3.4E-31 7.3E-36 240.9 15.5 181 80-295 8-212 (261)
289 PRK13549 xylose transporter AT 100.0 1.2E-31 2.7E-36 264.7 13.7 183 79-296 258-470 (506)
290 PRK15134 microcin C ABC transp 100.0 1.2E-31 2.7E-36 266.0 13.5 182 79-296 274-491 (529)
291 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.9E-31 6.3E-36 239.4 14.4 159 104-296 9-181 (246)
292 PRK10938 putative molybdenum t 100.0 2E-31 4.4E-36 262.2 14.4 170 80-295 3-199 (490)
293 PRK09700 D-allose transporter 100.0 1.9E-31 4.2E-36 263.6 14.1 179 79-296 264-474 (510)
294 CHL00131 ycf16 sulfate ABC tra 100.0 6.3E-31 1.4E-35 237.3 16.2 179 80-295 7-215 (252)
295 cd03213 ABCG_EPDR ABCG transpo 100.0 3.2E-31 7E-36 230.8 13.4 148 80-292 3-172 (194)
296 COG4161 ArtP ABC-type arginine 100.0 9.6E-32 2.1E-36 223.3 8.4 178 80-295 2-205 (242)
297 COG0411 LivG ABC-type branched 100.0 1.1E-30 2.3E-35 230.0 15.4 179 80-295 4-214 (250)
298 TIGR02633 xylG D-xylose ABC tr 100.0 3.4E-31 7.3E-36 261.2 13.7 182 80-296 257-468 (500)
299 cd03215 ABC_Carb_Monos_II This 100.0 6.7E-31 1.5E-35 226.4 13.7 142 80-295 4-168 (182)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-30 3E-35 259.8 17.6 178 79-296 321-505 (552)
301 PRK09580 sufC cysteine desulfu 100.0 1.4E-30 3.1E-35 234.2 15.7 180 80-296 1-210 (248)
302 TIGR02770 nickel_nikD nickel i 100.0 4.5E-31 9.7E-36 235.5 12.3 163 104-295 1-190 (230)
303 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-30 2.7E-35 228.5 14.8 158 80-294 3-183 (202)
304 cd03232 ABC_PDR_domain2 The pl 100.0 9.8E-31 2.1E-35 227.3 13.8 148 80-292 3-169 (192)
305 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4E-31 8.6E-36 235.1 11.6 176 81-295 23-206 (224)
306 PRK11819 putative ABC transpor 100.0 1.7E-30 3.8E-35 259.3 17.4 178 79-296 323-507 (556)
307 COG0410 LivF ABC-type branched 100.0 1.2E-30 2.7E-35 227.9 14.1 177 80-295 3-201 (237)
308 COG1123 ATPase components of v 100.0 6.1E-31 1.3E-35 255.7 13.4 186 80-296 5-220 (539)
309 COG4598 HisP ABC-type histidin 100.0 1.3E-31 2.9E-36 225.8 7.0 179 80-296 6-217 (256)
310 PRK13409 putative ATPase RIL; 100.0 2.3E-30 5E-35 259.4 16.2 172 79-296 339-519 (590)
311 PRK03695 vitamin B12-transport 100.0 1.9E-30 4.1E-35 234.2 13.8 161 104-295 11-197 (248)
312 COG4172 ABC-type uncharacteriz 100.0 1.2E-30 2.5E-35 242.9 12.3 190 79-296 275-492 (534)
313 COG4152 ABC-type uncharacteriz 100.0 5E-31 1.1E-35 231.6 9.3 178 80-295 2-194 (300)
314 cd03214 ABC_Iron-Siderophores_ 100.0 7.4E-31 1.6E-35 225.8 10.2 153 82-294 1-161 (180)
315 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.6E-30 9.9E-35 224.5 14.0 146 81-295 1-168 (200)
316 PLN03073 ABC transporter F fam 100.0 5.9E-30 1.3E-34 261.0 16.1 178 79-296 507-689 (718)
317 PRK11147 ABC transporter ATPas 100.0 8.8E-30 1.9E-34 257.8 17.1 177 79-295 318-501 (635)
318 PRK11288 araG L-arabinose tran 100.0 3.3E-30 7.2E-35 254.3 13.5 165 104-296 268-461 (501)
319 PRK10762 D-ribose transporter 100.0 3.5E-30 7.7E-35 254.1 13.3 165 104-296 267-460 (501)
320 PRK10636 putative ABC transpor 100.0 1.1E-29 2.4E-34 257.0 16.6 179 80-295 1-210 (638)
321 TIGR03771 anch_rpt_ABC anchore 100.0 7.1E-30 1.5E-34 226.9 13.1 158 110-295 1-177 (223)
322 PRK10636 putative ABC transpor 100.0 1.3E-29 2.7E-34 256.6 16.5 173 79-295 311-491 (638)
323 TIGR01257 rim_protein retinal- 100.0 7.5E-30 1.6E-34 279.2 15.1 181 79-295 927-1124(2272)
324 COG1129 MglA ABC-type sugar tr 100.0 1E-29 2.3E-34 245.6 14.2 179 80-295 8-209 (500)
325 PRK13546 teichoic acids export 100.0 1.6E-29 3.4E-34 230.3 14.4 185 80-295 4-207 (264)
326 PRK10938 putative molybdenum t 100.0 1.2E-29 2.7E-34 249.5 14.6 180 79-295 259-466 (490)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.8E-29 3.9E-34 209.9 13.3 127 81-295 1-131 (144)
328 PRK10535 macrolide transporter 100.0 1.4E-29 3E-34 256.8 15.2 182 80-297 4-210 (648)
329 PRK13545 tagH teichoic acids e 100.0 1.9E-29 4E-34 246.2 14.8 180 79-295 20-207 (549)
330 cd03216 ABC_Carb_Monos_I This 100.0 2E-29 4.3E-34 213.8 12.9 139 81-295 1-146 (163)
331 TIGR01257 rim_protein retinal- 100.0 1.5E-29 3.2E-34 276.9 15.3 182 78-295 1935-2134(2272)
332 PRK10982 galactose/methyl gala 100.0 1.5E-29 3.3E-34 248.9 13.5 179 79-296 249-456 (491)
333 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-29 4.7E-34 249.1 13.8 176 79-296 267-468 (510)
334 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-29 4.2E-34 228.6 12.2 168 85-295 5-203 (255)
335 COG4608 AppF ABC-type oligopep 100.0 2.4E-29 5.1E-34 225.4 11.5 163 80-297 4-176 (268)
336 COG3845 ABC-type uncharacteriz 100.0 2.8E-29 6.1E-34 239.0 12.4 180 80-296 4-205 (501)
337 COG4148 ModC ABC-type molybdat 100.0 1.3E-29 2.8E-34 226.5 8.9 156 105-295 14-193 (352)
338 COG0488 Uup ATPase components 100.0 6.1E-29 1.3E-33 244.6 14.1 178 80-295 3-214 (530)
339 COG4559 ABC-type hemin transpo 100.0 8.2E-29 1.8E-33 213.7 12.4 181 80-297 1-207 (259)
340 COG4172 ABC-type uncharacteriz 100.0 8E-29 1.7E-33 230.7 13.1 190 79-297 5-224 (534)
341 PLN03211 ABC transporter G-25; 100.0 4.4E-29 9.6E-34 253.0 12.5 166 103-293 82-268 (659)
342 COG1119 ModF ABC-type molybden 100.0 5.1E-29 1.1E-33 219.5 10.5 180 79-295 30-237 (257)
343 PRK11147 ABC transporter ATPas 100.0 3E-28 6.5E-33 246.6 16.7 177 80-295 3-217 (635)
344 COG4136 ABC-type uncharacteriz 100.0 3.7E-28 8E-33 199.6 10.2 177 80-295 2-199 (213)
345 TIGR00956 3a01205 Pleiotropic 100.0 4.9E-28 1.1E-32 262.0 13.7 183 80-294 759-965 (1394)
346 PRK15177 Vi polysaccharide exp 99.9 7.7E-28 1.7E-32 212.5 12.1 157 104-295 2-167 (213)
347 PRK13409 putative ATPase RIL; 99.9 4.4E-28 9.5E-33 242.9 11.7 165 85-296 78-276 (590)
348 COG4604 CeuD ABC-type enteroch 99.9 2E-28 4.4E-33 209.2 5.6 181 80-297 1-202 (252)
349 TIGR01187 potA spermidine/putr 99.9 7.4E-28 1.6E-32 225.5 9.8 145 130-295 3-165 (325)
350 TIGR00955 3a01204 The Eye Pigm 99.9 2E-27 4.3E-32 239.9 11.5 164 104-292 40-227 (617)
351 cd03222 ABC_RNaseL_inhibitor T 99.9 5.8E-27 1.3E-31 201.3 10.9 125 84-295 4-136 (177)
352 COG0488 Uup ATPase components 99.9 7E-26 1.5E-30 223.0 20.0 175 78-295 319-500 (530)
353 PLN03140 ABC transporter G fam 99.9 8.8E-27 1.9E-31 252.3 14.7 189 80-293 867-1081(1470)
354 cd00267 ABC_ATPase ABC (ATP-bi 99.9 5.2E-26 1.1E-30 191.1 12.5 126 83-296 2-145 (157)
355 cd03238 ABC_UvrA The excision 99.9 4.9E-26 1.1E-30 195.4 12.5 129 104-296 10-154 (176)
356 PLN03073 ABC transporter F fam 99.9 1.9E-25 4.2E-30 228.0 15.8 176 79-296 176-406 (718)
357 COG4107 PhnK ABC-type phosphon 99.9 1.1E-25 2.3E-30 189.3 9.4 175 80-295 6-216 (258)
358 COG4674 Uncharacterized ABC-ty 99.9 4.6E-25 1E-29 188.3 12.4 180 80-296 5-211 (249)
359 COG4133 CcmA ABC-type transpor 99.9 3.5E-25 7.6E-30 188.0 8.3 159 104-294 17-193 (209)
360 TIGR00956 3a01205 Pleiotropic 99.9 6.4E-25 1.4E-29 238.0 11.8 167 103-292 75-271 (1394)
361 KOG0061|consensus 99.9 2.2E-24 4.8E-29 216.9 12.5 186 80-294 25-233 (613)
362 cd03270 ABC_UvrA_I The excisio 99.9 6.6E-24 1.4E-28 189.1 13.4 81 207-296 118-204 (226)
363 COG4167 SapF ABC-type antimicr 99.9 3E-24 6.6E-29 181.8 9.6 190 80-297 4-216 (267)
364 COG4778 PhnL ABC-type phosphon 99.9 4.6E-25 1E-29 184.7 4.1 179 80-294 4-215 (235)
365 COG1101 PhnK ABC-type uncharac 99.9 1.6E-24 3.4E-29 187.6 7.5 165 104-295 21-213 (263)
366 PF00005 ABC_tran: ABC transpo 99.9 1.2E-24 2.5E-29 178.1 6.4 121 105-263 1-137 (137)
367 COG1134 TagH ABC-type polysacc 99.9 6.9E-24 1.5E-28 187.1 10.9 163 103-296 41-212 (249)
368 COG0396 sufC Cysteine desulfur 99.9 2.1E-23 4.5E-28 182.3 13.2 183 80-297 3-210 (251)
369 PLN03140 ABC transporter G fam 99.9 5.8E-24 1.3E-28 230.5 10.5 165 103-292 179-398 (1470)
370 cd03278 ABC_SMC_barmotin Barmo 99.9 2.9E-23 6.3E-28 181.3 9.7 141 106-296 14-181 (197)
371 KOG0059|consensus 99.9 3.6E-23 7.8E-28 216.0 9.8 180 79-295 563-762 (885)
372 KOG0927|consensus 99.9 1.6E-22 3.6E-27 194.2 8.7 177 79-297 388-572 (614)
373 COG4586 ABC-type uncharacteriz 99.9 2.6E-22 5.6E-27 179.2 9.0 158 104-294 39-220 (325)
374 cd03271 ABC_UvrA_II The excisi 99.9 1.1E-21 2.3E-26 178.2 9.3 84 204-296 147-237 (261)
375 KOG0066|consensus 99.9 1.8E-21 4E-26 183.1 9.6 174 79-295 585-765 (807)
376 COG4615 PvdE ABC-type sideroph 99.8 6.9E-20 1.5E-24 170.7 14.5 228 7-293 265-511 (546)
377 COG1129 MglA ABC-type sugar tr 99.8 3.1E-20 6.6E-25 180.0 11.5 165 104-295 274-465 (500)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.8 4.8E-20 1E-24 165.3 12.0 66 231-296 155-226 (243)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.7E-20 3.7E-25 169.5 8.8 163 115-296 25-234 (251)
380 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.7E-20 5.8E-25 164.3 9.7 163 80-296 5-198 (213)
381 KOG0062|consensus 99.8 9E-20 2E-24 174.5 9.1 175 79-295 361-543 (582)
382 cd03240 ABC_Rad50 The catalyti 99.8 3.1E-19 6.8E-24 156.7 8.9 144 108-296 16-188 (204)
383 COG1245 Predicted ATPase, RNas 99.8 8.2E-19 1.8E-23 166.1 11.7 157 104-296 351-521 (591)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2.6E-20 5.7E-25 164.5 1.2 170 81-296 6-195 (212)
385 KOG0927|consensus 99.8 1.4E-18 3E-23 167.4 12.5 184 78-295 73-283 (614)
386 KOG0062|consensus 99.8 1.1E-18 2.3E-23 167.3 10.0 165 79-295 79-259 (582)
387 PRK00635 excinuclease ABC subu 99.8 8.5E-18 1.8E-22 182.5 15.0 106 181-296 763-877 (1809)
388 KOG0065|consensus 99.8 8.5E-19 1.8E-23 182.9 6.6 166 103-294 805-993 (1391)
389 PRK00349 uvrA excinuclease ABC 99.7 1.9E-17 4E-22 172.7 14.0 66 231-296 827-898 (943)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.1E-17 2.3E-22 146.3 9.9 151 104-297 11-182 (198)
391 COG4170 SapD ABC-type antimicr 99.7 3.5E-18 7.5E-23 148.0 6.1 186 82-295 5-223 (330)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.7 6.5E-18 1.4E-22 152.4 7.2 97 201-297 109-225 (247)
393 COG3845 ABC-type uncharacteriz 99.7 2.7E-17 5.9E-22 157.3 11.5 183 78-295 255-467 (501)
394 COG4138 BtuD ABC-type cobalami 99.7 3.9E-18 8.4E-23 143.9 1.9 168 80-295 3-196 (248)
395 TIGR00630 uvra excinuclease AB 99.7 3.7E-16 8E-21 162.8 14.8 67 231-297 825-897 (924)
396 COG2401 ABC-type ATPase fused 99.7 2.1E-16 4.6E-21 148.4 10.1 167 103-296 397-573 (593)
397 COG1245 Predicted ATPase, RNas 99.6 1.3E-16 2.8E-21 151.2 6.0 146 112-295 97-277 (591)
398 KOG2355|consensus 99.6 3.3E-14 7.2E-19 123.0 12.0 168 78-292 11-209 (291)
399 PRK00349 uvrA excinuclease ABC 99.5 1.2E-14 2.6E-19 151.8 8.9 66 231-296 486-556 (943)
400 TIGR00630 uvra excinuclease AB 99.5 1.6E-14 3.5E-19 150.6 9.5 66 231-296 484-554 (924)
401 cd03280 ABC_MutS2 MutS2 homolo 99.5 4.1E-14 8.8E-19 123.7 8.9 65 232-297 89-157 (200)
402 KOG0066|consensus 99.5 2.5E-14 5.4E-19 135.3 7.2 172 80-294 264-472 (807)
403 TIGR00606 rad50 rad50. This fa 99.5 6.5E-14 1.4E-18 152.3 11.4 108 178-296 1153-1275(1311)
404 cd03277 ABC_SMC5_euk Eukaryoti 99.5 1.2E-13 2.5E-18 122.2 8.9 64 231-294 123-195 (213)
405 cd03227 ABC_Class2 ABC-type Cl 99.5 7.4E-14 1.6E-18 118.1 7.0 63 234-296 77-146 (162)
406 PRK00635 excinuclease ABC subu 99.5 1.1E-13 2.3E-18 151.0 9.0 67 230-296 472-543 (1809)
407 cd03239 ABC_SMC_head The struc 99.4 4E-13 8.6E-18 115.6 8.4 62 235-296 95-163 (178)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.4 7.1E-14 1.5E-18 124.3 3.2 127 104-295 19-157 (222)
409 cd03241 ABC_RecN RecN ATPase i 99.4 1E-12 2.2E-17 120.5 7.7 66 232-297 168-239 (276)
410 PHA02562 46 endonuclease subun 99.3 3.1E-12 6.7E-17 128.0 7.6 65 232-296 466-542 (562)
411 cd03243 ABC_MutS_homologs The 99.3 2.9E-12 6.3E-17 112.1 5.9 64 232-296 89-156 (202)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.3 3.7E-12 7.9E-17 111.9 6.3 130 104-296 18-156 (204)
413 cd03283 ABC_MutS-like MutS-lik 99.3 3.4E-12 7.3E-17 111.7 5.6 128 104-296 16-153 (199)
414 TIGR00634 recN DNA repair prot 99.2 1.5E-11 3.3E-16 123.4 7.8 64 233-296 439-508 (563)
415 PRK10869 recombination and rep 99.2 2.3E-11 5E-16 121.6 8.2 63 234-296 430-498 (553)
416 KOG0063|consensus 99.2 4.1E-11 9E-16 113.4 7.6 155 104-294 351-520 (592)
417 KOG0065|consensus 99.2 3E-11 6.6E-16 127.1 5.7 164 104-293 130-323 (1391)
418 TIGR00618 sbcc exonuclease Sbc 99.1 1.1E-10 2.4E-15 124.8 8.3 66 231-296 947-1025(1042)
419 COG0178 UvrA Excinuclease ATPa 99.1 2.3E-10 5E-15 115.5 9.7 84 207-298 803-892 (935)
420 TIGR01069 mutS2 MutS2 family p 99.1 9E-10 1.9E-14 113.9 14.3 63 232-295 383-449 (771)
421 cd03284 ABC_MutS1 MutS1 homolo 99.1 3.4E-10 7.4E-15 100.3 7.6 52 244-295 99-157 (216)
422 PRK03918 chromosome segregatio 99.0 2.9E-10 6.3E-15 119.5 7.6 66 231-296 785-859 (880)
423 PRK10246 exonuclease subunit S 99.0 3.4E-10 7.3E-15 121.0 8.1 64 231-294 946-1020(1047)
424 PRK01156 chromosome segregatio 99.0 3.7E-10 8.1E-15 119.1 8.3 67 231-297 798-876 (895)
425 TIGR02168 SMC_prok_B chromosom 99.0 3.3E-10 7.1E-15 121.6 7.4 66 231-296 1086-1157(1179)
426 cd03242 ABC_RecF RecF is a rec 99.0 7.1E-10 1.5E-14 101.4 6.9 60 233-292 182-250 (270)
427 KOG0063|consensus 99.0 2E-10 4.4E-15 108.8 2.2 83 205-296 193-278 (592)
428 smart00534 MUTSac ATPase domai 99.0 2.1E-10 4.6E-15 99.0 2.0 61 232-295 59-126 (185)
429 cd01128 rho_factor Transcripti 98.9 1.3E-09 2.9E-14 98.5 4.8 75 222-298 116-201 (249)
430 cd03281 ABC_MSH5_euk MutS5 hom 98.9 6.2E-09 1.3E-13 92.0 8.7 59 238-296 94-159 (213)
431 TIGR02169 SMC_prok_A chromosom 98.9 2.2E-09 4.8E-14 115.4 7.0 66 231-296 1071-1142(1164)
432 TIGR00611 recf recF protein. A 98.9 4.9E-09 1.1E-13 99.9 7.1 62 233-294 274-344 (365)
433 PRK00409 recombination and DNA 98.8 9.5E-09 2.1E-13 106.6 9.0 64 232-296 388-455 (782)
434 cd03287 ABC_MSH3_euk MutS3 hom 98.8 6.5E-09 1.4E-13 92.5 6.3 129 104-295 20-158 (222)
435 PRK00064 recF recombination pr 98.8 9E-09 1.9E-13 98.0 7.2 61 233-293 272-341 (361)
436 TIGR02680 conserved hypothetic 98.8 1.3E-08 2.9E-13 111.2 7.6 61 231-291 1244-1316(1353)
437 PRK02224 chromosome segregatio 98.7 1.6E-08 3.5E-13 106.5 6.7 65 232-296 779-859 (880)
438 PF02463 SMC_N: RecF/RecN/SMC 98.7 9.1E-08 2E-12 84.4 9.1 64 233-296 135-204 (220)
439 COG0178 UvrA Excinuclease ATPa 98.6 9E-08 1.9E-12 97.1 8.9 70 229-298 476-550 (935)
440 PRK14079 recF recombination pr 98.5 3.2E-07 6.9E-12 87.0 6.9 62 233-294 262-332 (349)
441 COG0419 SbcC ATPase involved i 98.4 7.3E-07 1.6E-11 94.5 7.9 66 231-296 812-888 (908)
442 PF13304 AAA_21: AAA domain; P 98.4 1.6E-06 3.4E-11 75.6 8.3 63 232-294 234-302 (303)
443 cd03286 ABC_MSH6_euk MutS6 hom 98.4 7.7E-07 1.7E-11 79.0 6.3 57 240-296 97-158 (218)
444 cd00820 PEPCK_HprK Phosphoenol 98.3 5.6E-07 1.2E-11 70.9 3.9 61 104-191 4-79 (107)
445 PF13558 SbcCD_C: Putative exo 98.3 1.6E-06 3.5E-11 66.2 6.1 49 231-279 29-90 (90)
446 PTZ00132 GTP-binding nuclear p 98.1 3.2E-06 6.9E-11 74.2 5.1 47 234-280 150-203 (215)
447 cd01124 KaiC KaiC is a circadi 98.1 1.8E-05 3.9E-10 67.5 9.3 63 231-293 68-142 (187)
448 TIGR02858 spore_III_AA stage I 98.1 1.1E-05 2.3E-10 74.0 7.6 42 248-293 190-231 (270)
449 PRK06793 fliI flagellum-specif 98.0 2.1E-05 4.5E-10 76.4 8.3 141 81-290 131-285 (432)
450 PRK08533 flagellar accessory p 98.0 6.6E-05 1.4E-09 67.2 10.5 58 234-292 95-163 (230)
451 PRK13695 putative NTPase; Prov 97.8 4.7E-05 1E-09 64.8 6.0 61 232-293 76-138 (174)
452 PRK05399 DNA mismatch repair p 97.6 0.0007 1.5E-08 71.4 12.3 62 234-295 666-734 (854)
453 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.00025 5.3E-09 72.8 7.1 63 232-295 549-618 (650)
454 cd01120 RecA-like_NTPases RecA 97.4 0.00094 2E-08 54.7 9.1 62 233-294 66-140 (165)
455 COG1196 Smc Chromosome segrega 97.3 0.00032 7E-09 76.4 6.3 66 232-297 1064-1135(1163)
456 PRK06067 flagellar accessory p 97.3 0.0025 5.5E-08 56.7 11.0 60 234-293 100-167 (234)
457 cd01125 repA Hexameric Replica 97.3 0.00023 4.9E-09 63.8 4.2 43 248-291 107-159 (239)
458 KOG0964|consensus 97.0 0.00036 7.8E-09 72.1 2.7 64 233-296 1096-1165(1200)
459 PF13175 AAA_15: AAA ATPase do 97.0 0.0021 4.6E-08 61.4 7.2 64 231-294 338-415 (415)
460 COG4637 Predicted ATPase [Gene 96.9 0.0023 4.9E-08 59.5 6.7 64 233-296 269-336 (373)
461 TIGR02788 VirB11 P-type DNA tr 96.9 0.0032 6.9E-08 58.7 7.7 48 244-295 210-257 (308)
462 PRK07721 fliI flagellum-specif 96.8 0.0056 1.2E-07 59.9 9.1 38 104-161 148-189 (438)
463 PRK13891 conjugal transfer pro 96.7 0.0024 5.2E-08 67.5 6.1 51 245-295 680-734 (852)
464 TIGR00767 rho transcription te 96.7 0.0014 3.1E-08 63.0 3.4 45 78-138 128-187 (415)
465 PRK06995 flhF flagellar biosyn 96.6 0.0034 7.4E-08 62.0 5.5 59 104-189 245-307 (484)
466 PRK13830 conjugal transfer pro 96.5 0.0042 9.1E-08 65.4 5.8 46 250-295 650-699 (818)
467 PF13166 AAA_13: AAA domain 96.4 0.0089 1.9E-07 61.8 7.6 64 232-295 498-575 (712)
468 KOG0933|consensus 96.3 0.004 8.6E-08 64.9 3.9 58 233-290 1081-1144(1174)
469 PF09818 ABC_ATPase: Predicted 96.0 0.014 3.1E-07 56.5 6.4 78 211-288 298-395 (448)
470 cd01131 PilT Pilus retraction 95.9 0.02 4.3E-07 49.9 6.2 48 244-295 66-113 (198)
471 TIGR01070 mutS1 DNA mismatch r 95.9 0.06 1.3E-06 56.9 10.6 46 250-295 669-719 (840)
472 KOG0962|consensus 95.8 0.012 2.6E-07 63.4 4.9 63 234-296 1183-1259(1294)
473 smart00382 AAA ATPases associa 95.7 0.16 3.5E-06 39.4 10.2 59 232-290 58-125 (148)
474 cd02023 UMPK Uridine monophosp 95.6 0.008 1.7E-07 52.0 2.5 109 117-267 1-113 (198)
475 PRK06002 fliI flagellum-specif 95.6 0.015 3.3E-07 56.9 4.5 70 79-176 138-229 (450)
476 COG3910 Predicted ATPase [Gene 95.5 0.042 9.1E-07 47.8 6.6 61 233-294 128-191 (233)
477 KOG0018|consensus 95.3 0.017 3.7E-07 60.8 4.1 63 232-294 1049-1115(1141)
478 PRK13873 conjugal transfer ATP 95.1 0.033 7.2E-07 58.7 5.6 47 249-295 632-682 (811)
479 TIGR03238 dnd_assoc_3 dnd syst 95.1 0.012 2.5E-07 57.9 2.0 27 104-138 21-51 (504)
480 COG0497 RecN ATPase involved i 94.8 0.083 1.8E-06 52.9 7.2 63 233-295 430-498 (557)
481 KOG0996|consensus 94.7 0.028 6.1E-07 59.7 3.7 62 232-293 1193-1260(1293)
482 PRK08699 DNA polymerase III su 94.1 0.074 1.6E-06 50.1 4.7 39 256-294 116-156 (325)
483 PRK13898 type IV secretion sys 93.9 0.11 2.3E-06 54.8 6.0 48 248-295 638-689 (800)
484 TIGR02903 spore_lon_C ATP-depe 93.4 0.26 5.7E-06 50.4 7.8 48 206-279 244-291 (615)
485 TIGR01420 pilT_fam pilus retra 93.1 0.19 4.1E-06 47.6 5.8 48 244-295 187-234 (343)
486 COG4913 Uncharacterized protei 93.1 0.2 4.3E-06 51.3 6.0 57 233-289 989-1058(1104)
487 TIGR02655 circ_KaiC circadian 92.9 0.014 3.1E-07 57.8 -2.3 52 232-293 113-169 (484)
488 PRK04863 mukB cell division pr 92.9 0.083 1.8E-06 58.9 3.4 56 232-288 1363-1435(1486)
489 PRK07196 fliI flagellum-specif 92.2 0.11 2.4E-06 50.8 2.9 66 103-188 144-234 (434)
490 COG4694 Uncharacterized protei 92.1 0.37 7.9E-06 48.0 6.3 62 232-293 527-599 (758)
491 COG1195 RecF Recombinational D 91.5 0.37 8E-06 46.0 5.5 56 233-289 274-339 (363)
492 PRK15494 era GTPase Era; Provi 90.5 0.11 2.4E-06 49.2 1.0 45 78-138 16-71 (339)
493 PRK01889 GTPase RsgA; Reviewed 90.5 0.088 1.9E-06 50.2 0.4 68 104-190 184-263 (356)
494 PLN03210 Resistant to P. syrin 90.3 0.28 6.1E-06 53.8 4.0 51 237-296 287-339 (1153)
495 cd01130 VirB11-like_ATPase Typ 90.1 0.19 4.2E-06 43.1 2.1 67 104-189 14-95 (186)
496 PRK07594 type III secretion sy 89.6 0.22 4.7E-06 48.8 2.2 54 80-161 129-186 (433)
497 PF00488 MutS_V: MutS domain V 89.3 2 4.4E-05 38.4 8.2 46 250-295 120-170 (235)
498 PRK11098 microcin B17 transpor 88.7 1.5 3.3E-05 42.5 7.4 49 4-52 352-400 (409)
499 cd01122 GP4d_helicase GP4d_hel 88.5 2.5 5.5E-05 38.0 8.4 50 241-290 127-190 (271)
500 PRK14722 flhF flagellar biosyn 87.7 2 4.3E-05 41.3 7.4 23 104-134 126-150 (374)
No 1
>KOG0058|consensus
Probab=100.00 E-value=2e-50 Score=397.43 Aligned_cols=242 Identities=22% Similarity=0.267 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeE
Q psy11400 9 TMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITL 88 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 88 (298)
++.---.++..++.++..+|.++.+..++.+|++++++..+.+... +.......++.|+|+||+|
T Consensus 409 sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~---------------G~~~p~~~~G~IeF~~VsF 473 (716)
T KOG0058|consen 409 SFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT---------------GTLAPDHLQGVIEFEDVSF 473 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC---------------CccccccccceEEEEEeee
Confidence 3333446778999999999999999999999999999976654321 0000012457899999999
Q ss_pred ecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec
Q psy11400 89 GLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK 163 (298)
Q Consensus 89 ~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~ 163 (298)
+||.+. .+ +|+|+||+|+|||++|+| ||| || +..+ | ..+|+|++|+|..
T Consensus 474 aYP~Rp~~~-------Vlk~lsfti~pGe~vALV--------GPSGsGKSTiasL-------L----~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 474 AYPTRPDVP-------VLKNLSFTIRPGEVVALV--------GPSGSGKSTIASL-------L----LRFYDPTSGRILL 527 (716)
T ss_pred ecCCCCCch-------hhcCceeeeCCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCCCeEEE
Confidence 999764 33 999999999999999999 999 99 8888 7 8889999999863
Q ss_pred -----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-
Q psy11400 164 -----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD- 230 (298)
Q Consensus 164 -----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~- 230 (298)
..|++||+|.|+|.+|.+||+|||.|+. ...+++++..+++.++.++++.. |+||+|.++
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-------~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-------DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGE 600 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-------CCCCHHHHHHHHHHhChHHHHHhCccccccccCC
Confidence 2478999999999999999999999986 25788999999999999988755 999999987
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
++.+||||||||+||||||++||.||||||+|||||.++|..+.+.+.+ .++|||+|+||++++++.|
T Consensus 601 kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad 670 (716)
T KOG0058|consen 601 KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHAD 670 (716)
T ss_pred ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhcc
Confidence 8999999999999999999999999999999999999999999999875 4899999999999998754
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.7e-48 Score=390.06 Aligned_cols=248 Identities=20% Similarity=0.231 Sum_probs=218.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++.++.-+...+.+|+.++++.+.+++++..+.+|+.++++...|.+.+.. ........+.|+|
T Consensus 409 lG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~--------------~~~~~~~~g~I~~ 474 (709)
T COG2274 409 LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT--------------LIHLPKLQGEIEF 474 (709)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc--------------cccccccCceEEE
Confidence 56788888889999999999999999999999999999999998766432110 0011234568999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+..+++ +|+|+||+|++||++||+ |+| || |+|+ + .|+|+|++|
T Consensus 475 ~nvsf~y~~~~~~-------vL~~isL~I~~Ge~vaIv--------G~SGsGKSTL~KL-------L----~gly~p~~G 528 (709)
T COG2274 475 ENVSFRYGPDDPP-------VLEDLSLEIPPGEKVAIV--------GRSGSGKSTLLKL-------L----LGLYKPQQG 528 (709)
T ss_pred EEEEEEeCCCCcc-------hhhceeEEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence 9999999766544 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|.. ..|++||||+|++++|++|++|||+++. +..+++++.++++..++++++.. |.||+|
T Consensus 529 ~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-------p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-------PEATDEEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9863 2488999999999999999999999975 35678899999999999988765 999999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~~ 298 (298)
..+ .+.+||||||||++|||||+++|++||||||||+||+++|+.+.+.+.+. |+|+|+||||++++++.|
T Consensus 602 ~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ad 675 (709)
T COG2274 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSAD 675 (709)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhcc
Confidence 976 78899999999999999999999999999999999999999999999874 699999999999998764
No 3
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.3e-46 Score=371.17 Aligned_cols=240 Identities=24% Similarity=0.266 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400 6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (298)
.+.++..++..+..|+..+...+..+++...+.+|+.++++..++..... . ..........+.++|+|
T Consensus 272 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----------~--~~~~~~~~~~~~I~~~~ 339 (529)
T TIGR02868 272 TLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV----------V--PAAGALGLGKPTLELRD 339 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC----------C--CCCcccCCCCceEEEEE
Confidence 44455555667778888888888999999999999999886543211100 0 00000011234699999
Q ss_pred eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
|+|+|+++++ +|+|+||+|++||+++|+ ||| || |+++ + .|+|+|++|+|
T Consensus 340 vsf~Y~~~~~--------vL~~isl~i~~G~~vaIv--------G~SGsGKSTLl~l-------L----~g~~~p~~G~I 392 (529)
T TIGR02868 340 LSFGYPGSPP--------VLDGVSLDLPPGERVAIL--------GPSGSGKSTLLML-------L----TGLLDPLQGEV 392 (529)
T ss_pred EEEecCCCCc--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCcEE
Confidence 9999975444 999999999999999999 999 99 9999 8 99999999998
Q ss_pred ecc----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc
Q psy11400 162 TKP----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD 230 (298)
Q Consensus 162 ~~~----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~ 230 (298)
... .|++|+||||+|++|++|++|||.++. +..+++++.++++.+++++++.+ |+|+||..+
T Consensus 393 ~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGR-------PDATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred EECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccC-------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 643 256899999999999999999999974 24578899999999999988766 899999876
Q ss_pred -cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCc
Q psy11400 231 -WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRK 291 (298)
Q Consensus 231 -~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l 291 (298)
++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+. ++|+|+||||+
T Consensus 466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 78899999999999999999999999999999999999999999998763 79999999995
No 4
>KOG0060|consensus
Probab=100.00 E-value=2e-46 Score=360.09 Aligned_cols=270 Identities=47% Similarity=0.735 Sum_probs=236.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccC-------CCCCCCCcee
Q psy11400 3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG-------VDSLSEGIFI 75 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 75 (298)
....++.+.+++..+.+++++++...+.++++++++.||.++++++.++..+.+++++..+.. ...++.++..
T Consensus 349 L~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~ 428 (659)
T KOG0060|consen 349 LSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAE 428 (659)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccc
Confidence 356788899999999999999999999999999999999999999999876655554422111 0122223344
Q ss_pred ecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 76 YRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 76 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
+.++.|+|++|++..|++..- +++|+||+|+.|+.+.|+ ||| || |+|+ + +
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~-------lie~Ls~~V~~g~~LLIt--------G~sG~GKtSLlRv-------l----g 482 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDL-------LIENLSLEVPSGQNLLIT--------GPSGCGKTSLLRV-------L----G 482 (659)
T ss_pred cccceEEeeeeeecCCCCCce-------eeeeeeeEecCCCeEEEE--------CCCCCchhHHHHH-------H----h
Confidence 556789999999999984331 788999999999999999 999 99 9999 8 9
Q ss_pred cccccCCceeeccCCC---cEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc-
Q psy11400 152 QLWPLFGGTVTKPPRG---KLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT- 227 (298)
Q Consensus 152 ~l~~~~~G~i~~~~r~---~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~- 227 (298)
|+||..+|+++.+.+. .+.||||.||+..||+||++.||....+......+++++.+.|+.+++.+++++.+|||.
T Consensus 483 gLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~ 562 (659)
T KOG0060|consen 483 GLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQ 562 (659)
T ss_pred cccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCch
Confidence 9999999999987654 499999999999999999999997655554566789999999999999999999999995
Q ss_pred -ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400 228 -VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 -~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~ 298 (298)
..+|...||+|||||+++||.++++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++++||+
T Consensus 563 ~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 563 VDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHD 634 (659)
T ss_pred hhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999996
No 5
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.1e-45 Score=376.59 Aligned_cols=245 Identities=19% Similarity=0.176 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
+++++++..+...+..|+..++..+.+++++..+.+|+.++++..++.+.. . .......+.++|
T Consensus 391 iG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---------------~-~~~~~~~~~I~~ 454 (686)
T TIGR03797 391 LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---------------K-TDPGKLSGAIEV 454 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---------------c-CCCCCCCceEEE
Confidence 456677777788889999999999999999999999999998754322110 0 000112346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+.+..+ +|+|+||+|++||+++|+ |+| || |+++ + .|+|+|++|
T Consensus 455 ~nvsf~Y~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~sGsGKSTLlkl-------L----~gl~~p~~G 508 (686)
T TIGR03797 455 DRVTFRYRPDGPL-------ILDDVSLQIEPGEFVAIV--------GPSGSGKSTLLRL-------L----LGFETPESG 508 (686)
T ss_pred EEEEEEcCCCCcc-------ceeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCC
Confidence 9999999744333 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|..+ .|++|+||||+|++|++|++|||.++. + .+++++.++++.++++++++. |.|+||
T Consensus 509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-------~-~~~e~i~~al~~a~l~~~i~~lp~G~dt 580 (686)
T TIGR03797 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGA-------P-LTLDEAWEAARMAGLAEDIRAMPMGMHT 580 (686)
T ss_pred EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCC-------C-CCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 98532 367899999999999999999999864 2 568899999999999987765 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++.++|+|+||||+++++..|
T Consensus 581 ~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D 652 (686)
T TIGR03797 581 VISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNAD 652 (686)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCC
Confidence 876 78899999999999999999999999999999999999999999999888899999999999887654
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.3e-45 Score=368.30 Aligned_cols=234 Identities=20% Similarity=0.200 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCcee-ecCCcEEEeeeeEecCCC
Q psy11400 15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFI-YRNNLRGRLGITLGLRSG 93 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~~~~ 93 (298)
..+..|+..+...+..++++..+.+|+.++++..++.... ...... .....++|+||+|.|+++
T Consensus 298 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---------------~~~~~~~~~~~~i~~~~vsf~~~~~ 362 (588)
T PRK11174 298 PEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ---------------GEKELASNDPVTIEAEDLEILSPDG 362 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---------------CccccCCCCCceEEEEeeEEeccCC
Confidence 4567889999999999999999999999998653211100 000000 112359999999877654
Q ss_pred CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----
Q psy11400 94 GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----- 164 (298)
Q Consensus 94 ~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----- 164 (298)
.+ +|+|+||+|++|++++|+ |+| || |+++ + .|+| |++|+|...
T Consensus 363 ~~--------vL~~i~l~i~~G~~vaIv--------G~SGsGKSTL~~l-------L----~g~~-p~~G~I~i~g~~i~ 414 (588)
T PRK11174 363 KT--------LAGPLNFTLPAGQRIALV--------GPSGAGKTSLLNA-------L----LGFL-PYQGSLKINGIELR 414 (588)
T ss_pred Ce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC-CCCcEEEECCEecc
Confidence 44 999999999999999999 999 99 9999 8 9999 899998632
Q ss_pred ------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCC
Q psy11400 165 ------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLS 236 (298)
Q Consensus 165 ------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LS 236 (298)
.|++|+||||+|++|++|++|||.++. +..+++++.++++.+++++++++ |+|+||..+ .+.+||
T Consensus 415 ~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-------~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-------PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-------CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 367899999999999999999999974 34678999999999999988765 899999876 788999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+||||+++++..|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD 551 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCC
Confidence 9999999999999999999999999999999999999998876 4799999999999987654
No 7
>KOG0055|consensus
Probab=100.00 E-value=3.8e-46 Score=384.83 Aligned_cols=249 Identities=20% Similarity=0.266 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400 5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL 84 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 84 (298)
.+++.....+..-+..++......+++.++..+..+++++++..+.++... +.........+.|+|+
T Consensus 925 ~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~-------------~~~~~~~~~~G~I~~~ 991 (1228)
T KOG0055|consen 925 EDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS-------------TSGGKLPNVKGDIEFR 991 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC-------------CCCCccccceeEEEEe
Confidence 456666677777788888888999999999999999999999765443210 0111122335679999
Q ss_pred eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
||+|+||..... ++++|+||+|++|+.+||| ||| || ++.+ | .++|.|++|.
T Consensus 992 ~V~F~YPsRP~~------~Il~~l~l~i~~GqTvALV--------G~SGsGKSTvI~L-------L----eRfYdp~~G~ 1046 (1228)
T KOG0055|consen 992 NVSFAYPTRPDV------PVLNNLSLSIRAGQTVALV--------GPSGSGKSTVISL-------L----ERFYDPDAGK 1046 (1228)
T ss_pred eeEeeCCCCCCc------hhhcCCcEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCCCe
Confidence 999999965421 2999999999999999999 999 99 8888 5 6666677777
Q ss_pred eec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccc
Q psy11400 161 VTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTV 228 (298)
Q Consensus 161 i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~ 228 (298)
|.. ..|++||.|.|+|.||++|++|||+|+. ..++.+++.++++.+++++++.. |+||||.
T Consensus 1047 V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-------~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1047 VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-------EEVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-------CCCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 643 2488999999999999999999999983 13788999999999999988754 9999999
Q ss_pred cc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 229 AD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 229 ~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
++ ++.+||||||||+|||||+++||+||+|||+|||||.++|+.+.+.+.+ .|+|.|+|+||+++++..|
T Consensus 1120 vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD 1192 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNAD 1192 (1228)
T ss_pred cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCC
Confidence 87 8999999999999999999999999999999999999999999999986 4999999999999998764
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.1e-45 Score=374.72 Aligned_cols=254 Identities=21% Similarity=0.236 Sum_probs=211.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++.++..++..+..|+..+...+.+++++..+.+|+.++++..++....... . .. ..........+.|++
T Consensus 409 ~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~------~-~~-~~~~~~~~~~~~I~~ 480 (710)
T TIGR03796 409 IGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE------A-PA-AGSEPSPRLSGYVEL 480 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc------c-cc-cccccCCCCCCeEEE
Confidence 456677777888899999999999999999999999999998764332111000 0 00 000000112356999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+....+ +|+|+||+|++||+++|+ |+| || |+++ + .|+|+|++|
T Consensus 481 ~~vsf~y~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~sGsGKSTLlkl-------L----~gl~~p~~G 534 (710)
T TIGR03796 481 RNITFGYSPLEPP-------LIENFSLTLQPGQRVALV--------GGSGSGKSTIAKL-------V----AGLYQPWSG 534 (710)
T ss_pred EEEEEecCCCCCC-------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence 9999999854333 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .|++|+||||+|++|++|++|||.++. +..+++++.++++.++++++++. |+|++|
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-------~~~~~~~i~~al~~~~l~~~i~~lp~gl~t 607 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-------PTIPDADLVRACKDAAIHDVITSRPGGYDA 607 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-------CCCCHHHHHHHHHHhCCHHHHHhCcCcccc
Confidence 98632 377899999999999999999998863 24678899999999999987765 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~ 298 (298)
..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++.++|+|+||||+++++..|
T Consensus 608 ~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D 679 (710)
T TIGR03796 608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679 (710)
T ss_pred eeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 876 78899999999999999999999999999999999999999999999888999999999999887654
No 9
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4e-45 Score=365.17 Aligned_cols=245 Identities=22% Similarity=0.279 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++..+...+..+..|+..+...+..++....+.+|+.++++..++..... . ......+.|+|
T Consensus 268 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--------------~--~~~~~~~~I~f 331 (567)
T COG1132 268 VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP--------------D--PLKDTIGSIEF 331 (567)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC--------------C--CCCCCCCeEEE
Confidence 5667888888889999999999999999999999999999998743322110 0 01112346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++++ +++|+||++++||++||+ ||| || ++++ + .++|+|++|
T Consensus 332 ~~vsf~y~~~~~--------vl~~is~~i~~Ge~vaiV--------G~sGsGKSTl~~L-------L----~r~~~~~~G 384 (567)
T COG1132 332 ENVSFSYPGKKP--------VLKDISFSIEPGEKVAIV--------GPSGSGKSTLIKL-------L----LRLYDPTSG 384 (567)
T ss_pred EEEEEEcCCCCc--------cccCceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCCCCC
Confidence 999999985444 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|..+ .|++|+||||+|++|++|++|||.++. +..+++++.++++.+++++++.+ |+||||
T Consensus 385 ~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-------~~at~eei~~a~k~a~~~d~I~~lp~g~dt 457 (567)
T COG1132 385 EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR-------PDATDEEIEEALKLANAHEFIANLPDGYDT 457 (567)
T ss_pred eEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC-------CCCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 98642 378899999999999999999999986 34678999999999999987755 889999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
..+ .+.+||||||||++||||++++|+++|||||||+||+++|..+.+.+++ .++|+|+|+||+++++..|
T Consensus 458 ~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD 531 (567)
T COG1132 458 IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD 531 (567)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCC
Confidence 987 7889999999999999999999999999999999999999999998864 4789999999999988764
No 10
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-45 Score=372.82 Aligned_cols=247 Identities=21% Similarity=0.252 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++..+......+..|+..+...+.++++..++.+|+.++++..++.... .........+.|+|
T Consensus 417 ~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---------------~~~~~~~~~~~I~~ 481 (711)
T TIGR00958 417 SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---------------GTLAPLNLEGLIEF 481 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---------------CCCCCCCCCCeEEE
Confidence 355666677778899999999999999999999999999998754322110 00000112346999
Q ss_pred eeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 84 LGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 84 ~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
+||+|+||+.. .+ +|+|+||+|++||+++|+ ||| || |+++ + .|+|+|++
T Consensus 482 ~nVsf~Y~~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~SGsGKSTLl~l-------L----~gl~~p~~ 535 (711)
T TIGR00958 482 QDVSFSYPNRPDVP-------VLKGLTFTLHPGEVVALV--------GPSGSGKSTVAAL-------L----QNLYQPTG 535 (711)
T ss_pred EEEEEECCCCCCCc-------cccCceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCC
Confidence 99999998532 22 999999999999999999 999 99 9999 8 99999999
Q ss_pred ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400 159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD 226 (298)
Q Consensus 159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d 226 (298)
|+|..+ .+++|+||||+|++|++|++|||.++. ...+++++.++++.+++++++++ |+|+|
T Consensus 536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-------~~~~~e~i~~al~~a~l~~~i~~lp~Gld 608 (711)
T TIGR00958 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-------TDTPDEEIMAAAKAANAHDFIMEFPNGYD 608 (711)
T ss_pred CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-------CCCCHHHHHHHHHHcCCHHHHHhCCCccC
Confidence 998642 357899999999999999999999975 24567889999999999998876 88999
Q ss_pred cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400 227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~ 298 (298)
|..+ ++.+||||||||++||||++++|+++|||||||+||+++++.+.+.....++|+|+||||+++++.+|
T Consensus 609 T~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD 681 (711)
T TIGR00958 609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERAD 681 (711)
T ss_pred CcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCC
Confidence 9876 77899999999999999999999999999999999999999999843335899999999999987664
No 11
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3e-44 Score=364.20 Aligned_cols=268 Identities=58% Similarity=0.985 Sum_probs=220.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCC--------C-CCCCCce
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV--------D-SLSEGIF 74 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~ 74 (298)
+..|+.+..++.++..|+++++..+.+++++.++.+|+.++++..++................ . .......
T Consensus 366 ~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (659)
T TIGR00954 366 MQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIV 445 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 456888899999999999999999999999999999999999987765421110000000000 0 0000011
Q ss_pred eecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400 75 IYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR 150 (298)
Q Consensus 75 ~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~ 150 (298)
....+.++++||+|.|+++.. +++|+||+|++||+++|+ ||| || |+++ +
T Consensus 446 ~~~~~~i~~~nv~~~~~~~~~--------il~~isl~i~~Ge~~~Iv--------G~nGsGKSTLl~l-------L---- 498 (659)
T TIGR00954 446 EYQDNGIKFENIPLVTPNGDV--------LIESLSFEVPSGNHLLIC--------GPNGCGKSSLFRI-------L---- 498 (659)
T ss_pred ccCCCeEEEEeeEEECCCCCe--------eeecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----
Confidence 112356999999999975444 999999999999999999 999 99 9999 8
Q ss_pred ccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc
Q psy11400 151 DQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD 230 (298)
Q Consensus 151 ~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~ 230 (298)
+|+|+|++|++..+.+++++||||+|+++++|++||+.++............++++.++++.+++.++.+++.|+|+..+
T Consensus 499 ~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~ 578 (659)
T TIGR00954 499 GELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD 578 (659)
T ss_pred hCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc
Confidence 99999999999877778899999999999999999999875322111123456788999999999998888889999988
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~ 298 (298)
|+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++.++|+|+||||++++++||
T Consensus 579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCC
Confidence 99999999999999999999999999999999999999999999999888999999999999998875
No 12
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.1e-45 Score=372.43 Aligned_cols=248 Identities=18% Similarity=0.204 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++.++..+...+..|+.+++..+.+++++..+.+|+.++++..++..... .........+.|++
T Consensus 411 ~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--------------~~~~~~~~~~~I~~ 476 (708)
T TIGR01193 411 LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK--------------KRTELNNLNGDIVI 476 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc--------------cccCCCCCCCcEEE
Confidence 4566777777788899999999999999999999999999987543322100 00001112346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+.+.+ +|+|+||+|++|++++|+ |+| || |+++ + .|+|+|++|
T Consensus 477 ~~vsf~y~~~~~--------iL~~isl~i~~G~~vaIv--------G~SGsGKSTLlkl-------L----~gl~~p~~G 529 (708)
T TIGR01193 477 NDVSYSYGYGSN--------ILSDISLTIKMNSKTTIV--------GMSGSGKSTLAKL-------L----VGFFQARSG 529 (708)
T ss_pred EEEEEEcCCCCc--------ceeceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCCCCc
Confidence 999999974444 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .|++|+||||+|++|++|++|||.++.. +..+++++.++++.+++++++.. |.|+|+
T Consensus 530 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt 603 (708)
T TIGR01193 530 EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK------ENVSQDEIWAACEIAEIKDDIENMPLGYQT 603 (708)
T ss_pred EEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC------CCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence 98642 3678999999999999999999998731 24578899999999999988765 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-~~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++|||||+++|++||||||||+||+++++.+.+.+++ .++|+|+||||+++++..|
T Consensus 604 ~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D 676 (708)
T TIGR01193 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSD 676 (708)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCC
Confidence 876 7889999999999999999999999999999999999999999998876 3799999999999887654
No 13
>KOG0064|consensus
Probab=100.00 E-value=2.5e-45 Score=348.94 Aligned_cols=270 Identities=44% Similarity=0.760 Sum_probs=243.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCC---------CCCCC-
Q psy11400 2 SNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV---------DSLSE- 71 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~- 71 (298)
+|++.|++..++|.+.+.++.+++.++.+++++++++.|+.++++.+++...+.++++.+.+... ..+..
T Consensus 393 srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~ 472 (728)
T KOG0064|consen 393 SRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPT 472 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCc
Confidence 57999999999999999999999999999999999999999999999998877666543221110 00000
Q ss_pred CceeecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccc
Q psy11400 72 GIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLG 147 (298)
Q Consensus 72 ~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~ 147 (298)
...+...+.|.++||.+-.|.++. ++..++|+|++|-.+.|+ ||| || |+|+ +
T Consensus 473 ~~~i~~~~gI~lenIpvItP~~~v--------vv~~Ltf~i~~G~hLLIt--------GPNGCGKSSLfRI-------L- 528 (728)
T KOG0064|consen 473 TDAIRNFNGIILENIPVITPAGDV--------LVPKLTFQIEPGMHLLIT--------GPNGCGKSSLFRI-------L- 528 (728)
T ss_pred cchhhcccceEEecCceeccCcce--------eecceeEEecCCceEEEE--------CCCCccHHHHHHH-------H-
Confidence 112233457999999999998887 899999999999999999 999 99 9999 8
Q ss_pred cccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 148 TLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 148 ~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
+|+||.+.|....|.+.+|.|+||.||+.-||+||+|.||...++..+++..++++...|+.+.|++++++..|||.
T Consensus 529 ---ggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da 605 (728)
T KOG0064|consen 529 ---GGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDA 605 (728)
T ss_pred ---hccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhh
Confidence 99999999999999888999999999999999999999999888877788899999999999999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~ 298 (298)
+.+|-..||||||||+++||.++|+|++.+|||+|||+.++.|..+++.++..|.+.|.||||+++|++|+
T Consensus 606 ~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~ 676 (728)
T KOG0064|consen 606 VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHT 676 (728)
T ss_pred hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984
No 14
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-44 Score=369.27 Aligned_cols=248 Identities=21% Similarity=0.209 Sum_probs=209.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++..+..++..+..|+..+...+.+++....+.+|+.++++..++.... ..........+.|+|
T Consensus 401 ~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--------------~~~~~~~~~~~~I~~ 466 (694)
T TIGR03375 401 MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--------------TRFLHRPRLQGEIEF 466 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--------------CCCCCCCCccceEEE
Confidence 456677777778889999999999999999999999999998764321100 000000112346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++..+ +|+|+||+|++||+++|+ |+| || |+++ + .|+|+|++|
T Consensus 467 ~~vsf~Y~~~~~~-------vL~~i~l~i~~G~~iaIv--------G~sGsGKSTLlkl-------L----~gl~~p~~G 520 (694)
T TIGR03375 467 RNVSFAYPGQETP-------ALDNVSLTIRPGEKVAII--------GRIGSGKSTLLKL-------L----LGLYQPTEG 520 (694)
T ss_pred EEEEEEeCCCCcc-------ceeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence 9999999754433 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .|++|+||||+|++|++|++|||.++. +..+++++.++++.+++.++++. |+|+||
T Consensus 521 ~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-------~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T 593 (694)
T TIGR03375 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-------PYADDEEILRAAELAGVTEFVRRHPDGLDM 593 (694)
T ss_pred eEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-------CCCCHHHHHHHHHHcChHHHHHhCcccccc
Confidence 98632 367899999999999999999999874 24678899999999999987765 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+. ++|+|+||||+++++.+|
T Consensus 594 ~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D 667 (694)
T TIGR03375 594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667 (694)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 876 78899999999999999999999999999999999999999999988763 799999999999987654
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=361.83 Aligned_cols=247 Identities=19% Similarity=0.236 Sum_probs=206.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++..+..++..+..|+.++...+..++....+.+|+.++++..++...+ ........+.+++
T Consensus 281 ~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~----------------~~~~~~~~~~i~~ 344 (582)
T PRK11176 281 AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG----------------KRVIERAKGDIEF 344 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC----------------CcCCCCCCCeEEE
Confidence 355666777778888999999999999999999999998887642211100 0000112246999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++..+ +|+|+||+|++||+++|+ |+| || |+++ + .|+++|++|
T Consensus 345 ~~vsf~y~~~~~~-------il~~i~l~i~~G~~~aIv--------G~sGsGKSTLl~l-------l----~gl~~p~~G 398 (582)
T PRK11176 345 RNVTFTYPGKEVP-------ALRNINFKIPAGKTVALV--------GRSGSGKSTIANL-------L----TRFYDIDEG 398 (582)
T ss_pred EEEEEecCCCCCc-------cccCceEEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCc
Confidence 9999999754333 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .+++|+||||+|++|++|++|||.++.. ...+++++.++++.+++++++++ |+|+||
T Consensus 399 ~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~~~~~~i~~al~~~~l~~~i~~lp~Gldt 472 (582)
T PRK11176 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART------EQYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_pred eEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC------CCCCHHHHHHHHHHhCcHHHHHhcccccCc
Confidence 98532 2578999999999999999999998641 13578899999999999988765 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++|||||+++|+++|||||||+||++++..+.+.+++ .++|+|+||||++.++..|
T Consensus 473 ~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D 546 (582)
T PRK11176 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKAD 546 (582)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 866 7889999999999999999999999999999999999999999998876 3799999999999887654
No 16
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.6e-44 Score=352.77 Aligned_cols=244 Identities=20% Similarity=0.236 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400 6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (298)
.+..+..+...+..|+..+...+..++....+.+|+.++++..++... ..... ....+.++++|
T Consensus 262 ~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---------------~~~~~-~~~~~~i~~~~ 325 (529)
T TIGR02857 262 TGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---------------KAPVT-AAPAPSLEFSG 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---------------CcCCC-CCCCCeEEEEE
Confidence 344445555667788888888888999999999999998863211000 00000 01123699999
Q ss_pred eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
|+|+|+++..+ +++|+||+|++|++++|+ |+| || |+++ + .|+|+|++|+|
T Consensus 326 v~f~y~~~~~~-------il~~i~l~i~~G~~~~iv--------G~sGsGKSTL~~l-------l----~g~~~~~~G~I 379 (529)
T TIGR02857 326 LSVAYPGRRAP-------ALRPVSFTVPPGERVALV--------GPSGAGKSTLLNL-------L----LGFVDPTEGSI 379 (529)
T ss_pred EEEECCCCCcc-------cccceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCcEE
Confidence 99999865422 999999999999999999 999 99 9999 8 99999999998
Q ss_pred ecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc
Q psy11400 162 TKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA 229 (298)
Q Consensus 162 ~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~ 229 (298)
... .+++++||||+|++|++|++||+.++. +..+++++.++++.+++.+++++ |+|+||..
T Consensus 380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~-------~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR-------PDASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred EECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC-------CCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 532 256899999999999999999999864 23567889999999999988766 88999987
Q ss_pred c-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 230 D-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 230 ~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+||||+++++.+|
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERAD 524 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCC
Confidence 6 7889999999999999999999999999999999999999999998876 4899999999999987654
No 17
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.5e-44 Score=356.31 Aligned_cols=247 Identities=17% Similarity=0.197 Sum_probs=207.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++.... . .......+.+++
T Consensus 270 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---------------~-~~~~~~~~~i~~ 333 (571)
T TIGR02203 270 AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---------------T-RAIERARGDVEF 333 (571)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---------------C-CCCCCCCCeEEE
Confidence 345666667778889999999999999999999999999887643221100 0 000112346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|++...+ +++|+||++++||+++|+ |+| || |+++ + .|+|+|++|
T Consensus 334 ~~v~f~y~~~~~~-------il~~inl~i~~G~~v~Iv--------G~sGsGKSTLl~l-------L----~gl~~~~~G 387 (571)
T TIGR02203 334 RNVTFRYPGRDRP-------ALDSISLVIEPGETVALV--------GRSGSGKSTLVNL-------I----PRFYEPDSG 387 (571)
T ss_pred EEEEEEcCCCCCc-------cccCeeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCC
Confidence 9999999754333 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .+++|+|+||+|++|++|++|||.++.. ...+++++.++++.+++++++++ |+|+|+
T Consensus 388 ~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt 461 (571)
T TIGR02203 388 QILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT------EQADRAEIERALAAAYAQDFVDKLPLGLDT 461 (571)
T ss_pred eEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC------CCCCHHHHHHHHHHcChHHHHHhCcCcccc
Confidence 98632 3578999999999999999999998741 14678899999999999988766 889999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++||||++++|++++||||||+||+.+++.+.+.+++. ++|+|+||||++..+.+|
T Consensus 462 ~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D 535 (571)
T TIGR02203 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD 535 (571)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCC
Confidence 876 78899999999999999999999999999999999999999999988763 799999999999887664
No 18
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.1e-44 Score=357.02 Aligned_cols=241 Identities=21% Similarity=0.211 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400 6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (298)
.+..+...+..+..|+..+...+..+++...+.+|+.++++..++... .. ......+.++|+|
T Consensus 283 ~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---------------~~--~~~~~~~~i~~~~ 345 (592)
T PRK10790 283 VLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---------------ND--DRPLQSGRIDIDN 345 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---------------CC--ccCCCCCeEEEEE
Confidence 445555556678888889999999999999999999988764321100 00 0011234699999
Q ss_pred eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
|+|+|+++.+ +|+|+||+|++||+++|+ |+| || |+++ + .|+|+|++|+|
T Consensus 346 v~f~y~~~~~--------il~~i~l~i~~Ge~iaIv--------G~SGsGKSTLl~l-------L----~gl~~p~~G~I 398 (592)
T PRK10790 346 VSFAYRDDNL--------VLQNINLSVPSRGFVALV--------GHTGSGKSTLASL-------L----MGYYPLTEGEI 398 (592)
T ss_pred EEEEeCCCCc--------eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCCCCceE
Confidence 9999975443 999999999999999999 999 99 9999 8 99999999998
Q ss_pred ecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc
Q psy11400 162 TKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA 229 (298)
Q Consensus 162 ~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~ 229 (298)
... .+++|+||||+|++|++|++|||.++. ..+++++.++++.+++++++++ |+|+|+..
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i 470 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--------DISEEQVWQALETVQLAELARSLPDGLYTPL 470 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--------CCCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 532 367899999999999999999999864 3567889999999999998866 89999987
Q ss_pred c-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 230 D-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 230 ~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
+ .+.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++..+..|
T Consensus 471 ~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D 542 (592)
T PRK10790 471 GEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542 (592)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 6 7789999999999999999999999999999999999999999998876 3799999999999887654
No 19
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.4e-43 Score=353.83 Aligned_cols=247 Identities=21% Similarity=0.235 Sum_probs=201.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+.++..++..+..|+.++...+..+.....+..|+.++++..++.+.. ..........+.+++
T Consensus 272 ~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--------------~~~~~~~~~~~~I~~ 337 (588)
T PRK13657 272 VGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--------------PGAIDLGRVKGAVEF 337 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--------------CCCCCcCCCCCeEEE
Confidence 345566666677788888888888888888888888877775532211100 000000112246999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++.. +|+|+||++++|++++|+ |+| || |+++ + .|+|+|++|
T Consensus 338 ~~vsf~y~~~~~--------iL~~inl~i~~G~~v~Iv--------G~sGsGKSTLl~l-------L----~gl~~p~~G 390 (588)
T PRK13657 338 DDVSFSYDNSRQ--------GVEDVSFEAKPGQTVAIV--------GPTGAGKSTLINL-------L----QRVFDPQSG 390 (588)
T ss_pred EEEEEEeCCCCc--------eecceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCCCCC
Confidence 999999975444 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .+++|+||||+|++|++|++|||.++. +..+++++.++++.+++++++++ |+|+|+
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-------~~~~d~~i~~al~~~~l~~~i~~lp~gldt 463 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-------PDATDEEMRAAAERAQAHDFIERKPDGYDT 463 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-------CCCCHHHHHHHHHHhCHHHHHHhCcccccc
Confidence 98532 257899999999999999999999864 24568889999999999988765 889999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.+|
T Consensus 464 ~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D 537 (588)
T PRK13657 464 VVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNAD 537 (588)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCC
Confidence 865 7889999999999999999999999999999999999999999998876 3799999999999887664
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.2e-43 Score=383.73 Aligned_cols=250 Identities=16% Similarity=0.209 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400 6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (298)
+++.+...++....+++.++..+.+++++.++.+|+.++++..++.+... .... ... ......+.|+|+|
T Consensus 1101 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~-------~~~~--~~~-~~~~~~g~I~f~n 1170 (1466)
T PTZ00265 1101 DFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRD-------NGGI--RIK-NKNDIKGKIEIMD 1170 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC-------Cccc--ccc-cCCCCCceEEEEE
Confidence 34444333444445677888888999999999999999987543221100 0000 000 0011234699999
Q ss_pred eeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc----
Q psy11400 86 ITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL---- 156 (298)
Q Consensus 86 v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~---- 156 (298)
|+|+||++. .+ +|+|+||+|++|+++||| |+| || |+++ | .|+|+|
T Consensus 1171 VsF~Y~~~~~~~-------vL~~lsl~i~~G~~vAIV--------G~SGsGKSTl~~L-------L----~r~ydp~~~~ 1224 (1466)
T PTZ00265 1171 VNFRYISRPNVP-------IYKDLTFSCDSKKTTAIV--------GETGSGKSTVMSL-------L----MRFYDLKNDH 1224 (1466)
T ss_pred EEEECCCCCCCc-------cccCeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhCCCcccc
Confidence 999998532 22 999999999999999999 999 99 9999 6 777776
Q ss_pred --------------------------------------------------CCceeec-----------cCCCcEEEEcCc
Q psy11400 157 --------------------------------------------------FGGTVTK-----------PPRGKLFYVPQR 175 (298)
Q Consensus 157 --------------------------------------------------~~G~i~~-----------~~r~~i~~v~Q~ 175 (298)
++|+|.. ..|++|+||||+
T Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe 1304 (1466)
T PTZ00265 1225 HIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE 1304 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC
Confidence 5888853 247889999999
Q ss_pred CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCC
Q psy11400 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRP 253 (298)
Q Consensus 176 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P 253 (298)
|++|++||+|||.|+. +..+++++.++++.+++++++.. |+||||.++ .+.+||||||||++|||||+++|
T Consensus 1305 p~LF~gTIreNI~~g~-------~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1305 PMLFNMSIYENIKFGK-------EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred CccccccHHHHHhcCC-------CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999974 24678899999999999998765 899999987 78899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcchhhhcC
Q psy11400 254 QFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 254 ~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~~~~~~ 298 (298)
+|||||||||+||+++++.+.+.+.+. ++|+|+||||+++++..|
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD 1426 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSD 1426 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCC
Confidence 999999999999999999999888763 799999999999988754
No 21
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.9e-43 Score=351.43 Aligned_cols=233 Identities=21% Similarity=0.255 Sum_probs=193.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCCCC
Q psy11400 18 AEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGF 97 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 97 (298)
..++..+...+..+++..++.+|+.++++..++.... ... ......+.++|+||+|+|+++..+
T Consensus 291 ~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--------------~~~-~~~~~~~~i~~~~v~f~y~~~~~~- 354 (574)
T PRK11160 291 FEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--------------TTS-TAAADQVSLTLNNVSFTYPDQPQP- 354 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--------------ccc-CCCCCCCeEEEEEEEEECCCCCCc-
Confidence 4566667777788889999999999988753321100 000 001123469999999999764332
Q ss_pred CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------
Q psy11400 98 DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------- 164 (298)
Q Consensus 98 ~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------- 164 (298)
+|+|+||++++|++++|+ ||| || |+++ + .|+|+|++|+|...
T Consensus 355 ------il~~i~~~i~~G~~~aiv--------G~sGsGKSTL~~l-------l----~g~~~p~~G~I~i~g~~i~~~~~ 409 (574)
T PRK11160 355 ------VLKGLSLQIKAGEKVALL--------GRTGCGKSTLLQL-------L----TRAWDPQQGEILLNGQPIADYSE 409 (574)
T ss_pred ------ceecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCceEEECCEEhhhCCH
Confidence 999999999999999999 999 99 9999 8 99999999998632
Q ss_pred --CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc-cCCCCChhHHH
Q psy11400 165 --PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD-WIDVLSGGEKQ 241 (298)
Q Consensus 165 --~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~-~~~~LSgGqkQ 241 (298)
.|++|+||||+|++|++|++||+.++. +..+++++.++++.+++++++++|+|+||..+ ++.+|||||||
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-------~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrq 482 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSATLRDNLLLAA-------PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQR 482 (574)
T ss_pred HHHHhheeEEcccchhhcccHHHHhhcCC-------CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHH
Confidence 367899999999999999999999875 24578899999999999987755999999876 78899999999
Q ss_pred HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 242 RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 242 RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||+++++..|
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d 541 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFD 541 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCC
Confidence 99999999999999999999999999999999998876 3899999999999887543
No 22
>KOG0057|consensus
Probab=100.00 E-value=4.1e-43 Score=336.07 Aligned_cols=244 Identities=20% Similarity=0.271 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++.-+..++.++..|+..+...|+++.++..-..-+....+...+.... ..++...++.|+|
T Consensus 291 vgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~----------------~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 291 VGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA----------------ALPIELFGGSIEF 354 (591)
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc----------------cCCcccCCCcEEE
Confidence 345666677777778888888877777766655444444333333222210 0012233467999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++++ +|+++||+|++||++||+ |+| || ++|+ | .+++. ++|
T Consensus 355 ~dV~f~y~~k~~--------iL~gvsf~I~kGekVaIv--------G~nGsGKSTilr~-------L----lrF~d-~sG 406 (591)
T KOG0057|consen 355 DDVHFSYGPKRK--------VLKGVSFTIPKGEKVAIV--------GSNGSGKSTILRL-------L----LRFFD-YSG 406 (591)
T ss_pred EeeEEEeCCCCc--------eecceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HHHhc-cCC
Confidence 999999976555 999999999999999999 999 99 9999 7 77777 888
Q ss_pred eeec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|.. ..|+-||||||+..||++||.+||.|+. ...+++++.++++.+++++...+ |+||+|
T Consensus 407 ~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T 479 (591)
T KOG0057|consen 407 SILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-------PSASDEEVVEACKRAGLHDVISRLPDGYQT 479 (591)
T ss_pred cEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC-------CCcCHHHHHHHHHHcCcHHHHHhccccchh
Confidence 8753 2478899999999999999999999986 46788999999999999986655 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
.++ ++..|||||||||+||||++++|+|+++|||||+||.++|..+.+.+.+ .++|+|+|.||+++++++|
T Consensus 480 ~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~D 553 (591)
T KOG0057|consen 480 LVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFD 553 (591)
T ss_pred hHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCC
Confidence 987 8899999999999999999999999999999999999999999999876 4899999999999998875
No 23
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.2e-42 Score=347.55 Aligned_cols=248 Identities=21% Similarity=0.265 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400 5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL 84 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 84 (298)
+.+..+...+..+..|+..+...+.++.+...+.+|+.++++..++..... . ... ......+.++++
T Consensus 275 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-----------~-~~~-~~~~~~~~i~~~ 341 (576)
T TIGR02204 275 GTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA-----------H-PKT-LPVPLRGEIEFE 341 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC-----------C-Ccc-CCcCCCceEEEE
Confidence 456666667788899999999999999999999999999877533211000 0 000 000112469999
Q ss_pred eeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 85 GITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 85 ~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
||+|+|+.+. .+ +|+|+||++++||+++|+ |+| || |+++ + .|+|+|++|
T Consensus 342 ~v~f~y~~~~~~~-------iL~~inl~i~~Ge~i~Iv--------G~sGsGKSTLlkl-------L----~gl~~p~~G 395 (576)
T TIGR02204 342 QVNFAYPARPDQP-------ALDGLNLTVRPGETVALV--------GPSGAGKSTLFQL-------L----LRFYDPQSG 395 (576)
T ss_pred EEEEECCCCCCCc-------cccceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCC
Confidence 9999997532 22 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .+++|+|+||+|++|++|++||+.++. +..+++++.++++.+++.+++++ |.|+++
T Consensus 396 ~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-------~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 396 RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-------PDATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred EEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-------CCCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence 98532 256799999999999999999999875 23467889999999999988876 789999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++||||++++|+++|||||||+||+.+++.+.+.+++ .++|+|+||||++..+.+|
T Consensus 469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 865 7889999999999999999999999999999999999999999988876 3899999999999887654
No 24
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-42 Score=353.83 Aligned_cols=247 Identities=19% Similarity=0.202 Sum_probs=208.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
+++++.+..+...+..|+..+...+..++++..+.+|+.++++..++.... .........+.+++
T Consensus 394 ~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---------------~~~~~~~~~~~i~~ 458 (694)
T TIGR01846 394 PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA---------------GLAALPELRGAITF 458 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---------------CCCCCCCCCCeEEE
Confidence 456667777778889999999999999999999999999998754322100 00001112356999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++..+ +++|+||+|++|++++|+ |+| || |+++ + .|+++|++|
T Consensus 459 ~~vsf~y~~~~~~-------il~~i~l~i~~G~~vaiv--------G~sGsGKSTL~~l-------l----~g~~~p~~G 512 (694)
T TIGR01846 459 ENIRFRYAPDSPE-------VLSNLNLDIKPGEFIGIV--------GPSGSGKSTLTKL-------L----QRLYTPQHG 512 (694)
T ss_pred EEEEEEcCCCCcc-------ccccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence 9999999754333 899999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .|++|+||||++++|++|++||+.++. +..+++++.++++.+++++++++ |.|+|+
T Consensus 513 ~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-------~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t 585 (694)
T TIGR01846 513 QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-------PGAPFEHVIHAAKLAGAHDFISELPQGYNT 585 (694)
T ss_pred eEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-------CCCCHHHHHHHHHHcChHHHHHhCcCccCc
Confidence 98532 357899999999999999999999864 24578899999999999988765 889999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++ .++|+|+||||+++++..|
T Consensus 586 ~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d 659 (694)
T TIGR01846 586 EVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD 659 (694)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCC
Confidence 876 7789999999999999999999999999999999999999999998876 3799999999999886543
No 25
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3.8e-42 Score=337.57 Aligned_cols=252 Identities=29% Similarity=0.476 Sum_probs=220.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceee---cCC
Q psy11400 3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIY---RNN 79 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 79 (298)
..++++....++.++.++++|+++.|..++.+++...|+.++...++........... +. ..... .+.
T Consensus 321 ~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~--------~~-~~~~~~~~~~~ 391 (604)
T COG4178 321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPAR--------TG-RRIDFDDNADH 391 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCc--------cc-ccccccccccc
Confidence 3578899999999999999999999999999999999999999988744321100000 00 01111 146
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++..|+++. .+++++|++++|+.+.|. |+| || |+|. + +|+||
T Consensus 392 ~i~~~nl~l~~p~~~~--------ll~~l~~~v~~G~~llI~--------G~SG~GKTsLlRa-------i----aGLWP 444 (604)
T COG4178 392 GITLENLSLRTPDGQT--------LLSELNFEVRPGERLLIT--------GESGAGKTSLLRA-------L----AGLWP 444 (604)
T ss_pred eeEEeeeeEECCCCCe--------eeccceeeeCCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCc
Confidence 7999999999998876 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~L 235 (298)
..+|+|..+....+.|+||.||++.||+||.++||.... ..+++++.++|.+++|+++.++ ++...+|...|
T Consensus 445 ~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~r---l~~~~~W~~vL 516 (604)
T COG4178 445 WGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAER---LDEEDRWDRVL 516 (604)
T ss_pred cCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHH---HhccCcHhhhc
Confidence 999999988777799999999999999999999998532 3678999999999999999988 46667799999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|+||||||++||+++++|++++|||+|||||++++..+++++++ .+.|+|.|+||..+.++|+
T Consensus 517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~ 581 (604)
T COG4178 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHS 581 (604)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHh
Confidence 99999999999999999999999999999999999999999998 6999999999999999885
No 26
>KOG0055|consensus
Probab=100.00 E-value=1.7e-43 Score=365.19 Aligned_cols=238 Identities=21% Similarity=0.243 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400 15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG 94 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 94 (298)
+....+++........+..+.++..+|.++++..+..+... ..........+.++|+||+|+||.+.
T Consensus 298 l~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-------------~~~~~~~~~~g~ief~nV~FsYPsRp 364 (1228)
T KOG0055|consen 298 LIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-------------KGGRVLSSIKGEIEFRNVCFSYPSRP 364 (1228)
T ss_pred hhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-------------ccCCcccccccceEEEEEEecCCCCC
Confidence 33445566666677778888999999999888765544211 00011122356899999999999764
Q ss_pred -CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec------
Q psy11400 95 -LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------ 163 (298)
Q Consensus 95 -~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------ 163 (298)
.+ +|+|+||.|++|+.+||| |+| || ++.+ + .++|.|++|+|..
T Consensus 365 dv~-------Il~g~sl~i~~G~~valV--------G~SGsGKST~i~L-------L----~RfydP~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 365 DVK-------ILKGVSLKIPSGQTVALV--------GPSGSGKSTLIQL-------L----ARFYDPTSGEVLIDGEDIR 418 (1228)
T ss_pred cch-------hhCCeEEEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCCceEEEcCccch
Confidence 22 999999999999999999 999 99 8888 7 9999999999863
Q ss_pred -----cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCC
Q psy11400 164 -----PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLS 236 (298)
Q Consensus 164 -----~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LS 236 (298)
..|++||.|.|+|.+|..|++|||.|+. ++++.+++.++++.++.++++.. |+||+|..+ .+.+||
T Consensus 419 ~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~-------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 419 NLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK-------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred hcchHHHHhhcCeeeechhhhcccHHHHHhcCC-------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 2478999999999999999999999986 46788999999999999988765 899999977 778999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|||||||||||||+++|+||+|||||||||+++++.+.+.+++ .|+|.|+|+||+++++..|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD 555 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNAD 555 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccC
Confidence 9999999999999999999999999999999999999999876 4999999999999998754
No 27
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.2e-42 Score=340.26 Aligned_cols=244 Identities=20% Similarity=0.258 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++++.++..++..+..|+.++...+..++++..+.+|+.++++..++.... . .....++.+++
T Consensus 257 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--------------~---~~~~~~~~i~~ 319 (544)
T TIGR01842 257 PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--------------M---PLPEPEGHLSV 319 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--------------C---CCCCCCCeEEE
Confidence 345666667777889999999999999999999999999998653321100 0 00111346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++..+ +++|+||++++|++++|+ |+| || |+++ + .|+++|++|
T Consensus 320 ~~v~~~y~~~~~~-------~l~~~~~~i~~G~~~~iv--------G~sGsGKSTL~~l-------l----~g~~~~~~G 373 (544)
T TIGR01842 320 ENVTIVPPGGKKP-------TLRGISFRLQAGEALAII--------GPSGSGKSTLARL-------I----VGIWPPTSG 373 (544)
T ss_pred EEEEEEcCCCCcc-------ccccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCc
Confidence 9999999754332 899999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .++.++||||+|++|++|++||+.+.. ...+++++.++++.+++++++++ |+|+++
T Consensus 374 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t 446 (544)
T TIGR01842 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG-------ENADPEKIIEAAKLAGVHELILRLPDGYDT 446 (544)
T ss_pred eEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC-------CCCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 98532 256899999999999999999998643 23567889999999999888766 789999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~ 297 (298)
..+ ++.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++..+..
T Consensus 447 ~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~ 520 (544)
T TIGR01842 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520 (544)
T ss_pred ccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence 866 7889999999999999999999999999999999999999999998765 379999999999877654
No 28
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=334.61 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceee-cCCcEEEeeeeEecCCCC
Q psy11400 16 KLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIY-RNNLRGRLGITLGLRSGG 94 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~~~~~~ 94 (298)
.+..|+..+...|..-....++.+.+..+.+........ ........ .+..++.+|++|.||+++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~--------------~~~~~~~~~~~~ei~~~~l~~~y~~g~ 334 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGS--------------GEKAEVANEPPIEISLENLSFRYPDGK 334 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC--------------ccccccccCCCceeeecceEEecCCCC
Confidence 456677777777776666677777777776654321110 00000011 112456679999999887
Q ss_pred CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-------
Q psy11400 95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------- 163 (298)
Q Consensus 95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------- 163 (298)
+ +++|+||++++|+.++|+ |+| || |+.+ + .|+.+|++|+|..
T Consensus 335 ~--------~l~~l~~t~~~g~~talv--------G~SGaGKSTLl~l-------L----~G~~~~~~G~I~vng~~l~~ 387 (559)
T COG4988 335 P--------ALSDLNLTIKAGQLTALV--------GASGAGKSTLLNL-------L----LGFLAPTQGEIRVNGIDLRD 387 (559)
T ss_pred c--------ccCCceeEecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCcCCCCCceEEECCccccc
Confidence 5 999999999999999999 999 99 9999 8 9999999999863
Q ss_pred ----cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc-cCCCCChh
Q psy11400 164 ----PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD-WIDVLSGG 238 (298)
Q Consensus 164 ----~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~-~~~~LSgG 238 (298)
.++++++||+|+|++|.+|++|||.++. ...+++++.++++.+++.++++.|+|+|+..+ .+..||||
T Consensus 388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~-------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgG 460 (559)
T COG4988 388 LSPEAWRKQISWVSQNPYLFAGTIRENILLAR-------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGG 460 (559)
T ss_pred cCHHHHHhHeeeeCCCCccccccHHHHhhccC-------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHH
Confidence 2478999999999999999999999975 35688999999999999999988999999876 78899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 239 qkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|+|||++||||++++++++||||||+||.++|+.+.+.+.+ +++|+|+||||+..++..|
T Consensus 461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADAD 522 (559)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCC
Confidence 99999999999999999999999999999999999998876 4899999999999877543
No 29
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-41 Score=340.19 Aligned_cols=246 Identities=19% Similarity=0.185 Sum_probs=203.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+.++..++..+..|+..+...+..++....+.+|+.++++..++.... . ......++.+++
T Consensus 253 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--------------~--~~~~~~~~~I~~ 316 (569)
T PRK10789 253 LGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--------------S--EPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--------------C--CCCCCCCCcEEE
Confidence 345566666677788899999999999999999999999988643221100 0 000112346999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+|++|+|+.+..+ +|+|+||++++|++++|+ ||| || |+++ + .|+++|++|
T Consensus 317 ~~v~~~y~~~~~~-------~l~~i~~~i~~G~~~~iv--------G~sGsGKSTLl~l-------l----~g~~~p~~G 370 (569)
T PRK10789 317 NIRQFTYPQTDHP-------ALENVNFTLKPGQMLGIC--------GPTGSGKSTLLSL-------I----QRHFDVSEG 370 (569)
T ss_pred EEEEEECCCCCCc-------cccCeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCCCCC
Confidence 9999999754332 899999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .+++++|+||+|++|++|++||+.++. ...+++++.++++.+++.+++.+ |+|+++
T Consensus 371 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-------~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t 443 (569)
T PRK10789 371 DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR-------PDATQQEIEHVARLASVHDDILRLPQGYDT 443 (569)
T ss_pred EEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCC-------CCCCHHHHHHHHHHcCCHHHHHhCcCcccc
Confidence 98532 256799999999999999999999864 23567889999999999876654 899999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
..+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.++..|
T Consensus 444 ~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d 517 (569)
T PRK10789 444 EVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEAS 517 (569)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCC
Confidence 876 7789999999999999999999999999999999999999999998876 4899999999998876543
No 30
>KOG0056|consensus
Probab=100.00 E-value=5.3e-43 Score=330.72 Aligned_cols=248 Identities=21% Similarity=0.230 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEE
Q psy11400 3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRG 82 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 82 (298)
-+++|.-+..-++++..|++|+.-.|+.+|....-++++.++++..++... .+...+....++.|+
T Consensus 474 tVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--------------~P~a~pl~~~~G~i~ 539 (790)
T KOG0056|consen 474 TVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--------------LPGAPPLKVTQGKIE 539 (790)
T ss_pred cccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--------------CCCCCCccccCCeEE
Confidence 367888888889999999999999999999999999999999887655432 122223333467899
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
|+||+|+|..+++ +|+|+||++.+|+.+|+| ||| || ++|+ + -++++..+
T Consensus 540 fsnvtF~Y~p~k~--------vl~disF~v~pGktvAlV--------G~SGaGKSTimRl-------L----fRffdv~s 592 (790)
T KOG0056|consen 540 FSNVTFAYDPGKP--------VLSDISFTVQPGKTVALV--------GPSGAGKSTIMRL-------L----FRFFDVNS 592 (790)
T ss_pred EEEeEEecCCCCc--------eeecceEEecCCcEEEEE--------CCCCCchhHHHHH-------H----HHHhhccC
Confidence 9999999977776 999999999999999999 999 99 9999 7 78888888
Q ss_pred ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcc
Q psy11400 159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWD 226 (298)
Q Consensus 159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d 226 (298)
|.|+.+ .|+.||.||||..+|+.|+..||.|+. ..++++++.++.+.+++++- +.-|+||+
T Consensus 593 GsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak-------~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 593 GSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK-------PSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred ceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC-------CCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 988642 478899999999999999999999975 46788999999999999874 55699999
Q ss_pred cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
+.++ ++-.|||||||||||||++++.|.+++|||+|||||..+|+.|...+.+ .++|.|+|+||+|++-+.|
T Consensus 666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheeccc
Confidence 9887 8899999999999999999999999999999999999999999988876 4899999999999886543
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-41 Score=370.46 Aligned_cols=239 Identities=19% Similarity=0.201 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400 15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG 94 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 94 (298)
..+..++.+++..+.+++....+.+|+.++.+..++..... .. .......+..+.|+|+||+|+|+.+.
T Consensus 1180 ~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~--------~~---~~~~~~~p~~g~I~f~nVsf~Y~~~~ 1248 (1495)
T PLN03232 1180 LNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAII--------EN---NRPVSGWPSRGSIKFEDVHLRYRPGL 1248 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--------cC---CCCCCCCCCCCcEEEEEEEEEECCCC
Confidence 34566778888888888899999999999886543321100 00 00000012235699999999996543
Q ss_pred CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------
Q psy11400 95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------ 164 (298)
Q Consensus 95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------ 164 (298)
++ +|+|+||+|++||++||+ |+| || |+++ | .|+++|++|+|..+
T Consensus 1249 ~~-------vL~~isl~I~~GekvaIV--------G~SGSGKSTL~~l-------L----~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1249 PP-------VLHGLSFFVSPSEKVGVV--------GRTGAGKSSMLNA-------L----FRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred Cc-------ccccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCcCCCceEEECCEEhhh
Confidence 33 999999999999999999 999 99 9999 8 99999999998532
Q ss_pred -----CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400 165 -----PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG 237 (298)
Q Consensus 165 -----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg 237 (298)
.|++|+||||+|++|++|++|||.+.. ..+++++.++++.+++.++++. |+|+|+..+ .+.+|||
T Consensus 1303 i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1374 (1495)
T PLN03232 1303 FGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSV 1374 (1495)
T ss_pred CCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCH
Confidence 378899999999999999999998742 3578899999999999988765 889999876 7789999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|||||++|||||+++|+|||||||||+||+++++.|.+.+++ .++|+|+||||+++++.+|
T Consensus 1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999999999886 3899999999999988764
No 32
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4e-41 Score=337.55 Aligned_cols=246 Identities=20% Similarity=0.214 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400 5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL 84 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 84 (298)
+.+..+...+..+..|+..+...+.+++....+.+|+.++++..++.... ..........+.++++
T Consensus 273 g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~ 338 (585)
T TIGR01192 273 GEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP--------------ADAPELPNVKGAVEFR 338 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC--------------ccCCCCCCCCCeEEEE
Confidence 44555566666778888888888888888888888988877643221100 0000001123469999
Q ss_pred eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
||+|+|+++.. +++|+||++++|++++|+ ||| || |+++ + .|+++|++|+
T Consensus 339 ~v~~~y~~~~~--------~l~~i~~~i~~G~~~~iv--------G~sGsGKSTL~~l-------l----~g~~~~~~G~ 391 (585)
T TIGR01192 339 HITFEFANSSQ--------GVFDVSFEAKAGQTVAIV--------GPTGAGKTTLINL-------L----QRVYDPTVGQ 391 (585)
T ss_pred EEEEECCCCCc--------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----ccCCCCCCCE
Confidence 99999975444 899999999999999999 999 99 9999 8 9999999999
Q ss_pred eecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh-hcCCcccc
Q psy11400 161 VTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN-REKGWDTV 228 (298)
Q Consensus 161 i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~d~~ 228 (298)
|... .++.++||||+|++|++|++||+.++. +..+++++.++++.+++.+++. .|+|+++.
T Consensus 392 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-------~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~ 464 (585)
T TIGR01192 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-------EGATDEEVYEAAKAAAAHDFILKRSNGYDTL 464 (585)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhccccccch
Confidence 8532 356899999999999999999999864 2346788899999999988765 48899997
Q ss_pred cc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 229 AD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 229 ~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
.+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.++.+|
T Consensus 465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d 537 (585)
T TIGR01192 465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNAD 537 (585)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCC
Confidence 65 7889999999999999999999999999999999999999999998875 3899999999999886543
No 33
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-41 Score=369.33 Aligned_cols=239 Identities=20% Similarity=0.190 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400 15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG 94 (298)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 94 (298)
..+..++.+++..+.++.....+.+|+.++++..++..... . . ......-+.++.|+|+||+|+|+++.
T Consensus 1183 ~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~------~-~----~~~~~~wp~~g~I~f~nVsf~Y~~~~ 1251 (1622)
T PLN03130 1183 LNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVI------E-N----NRPPPGWPSSGSIKFEDVVLRYRPEL 1251 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccc------c-C----CCCCCCCCCCCcEEEEEEEEEeCCCC
Confidence 34556666677777777888888899888875433221000 0 0 00000012245799999999996543
Q ss_pred CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------
Q psy11400 95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------ 164 (298)
Q Consensus 95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------ 164 (298)
++ +|+|+||+|++||++||+ |+| || |+++ | .|+++|++|+|..+
T Consensus 1252 ~~-------VL~~is~~I~~GekVaIV--------GrSGSGKSTLl~l-------L----~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1252 PP-------VLHGLSFEISPSEKVGIV--------GRTGAGKSSMLNA-------L----FRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred Cc-------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCcCCCCCceEEECCEeccc
Confidence 33 999999999999999999 999 99 9999 8 99999999998632
Q ss_pred -----CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400 165 -----PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG 237 (298)
Q Consensus 165 -----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg 237 (298)
.|++|++|||+|.+|+||++|||.+.. ..+++++.++++.+++.++++. |+|+|+..+ .+.+|||
T Consensus 1306 i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1306 FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred CCHHHHHhccEEECCCCccccccHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 378899999999999999999998753 3578899999999999988765 889999876 7789999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|||||++|||||+++|+|||||||||+||.++++.|.+.+++ .++|+|+|+||+++++.+|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~D 1440 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1440 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCC
Confidence 999999999999999999999999999999999999999886 4899999999999998764
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-41 Score=367.94 Aligned_cols=245 Identities=18% Similarity=0.114 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeE
Q psy11400 9 TMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITL 88 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 88 (298)
.....+..+..++.+++..+.++.....+.+|+.++.+..++..... .. ......-+.++.|+|+||+|
T Consensus 1224 ~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~--------~~---~~~~~~wp~~g~I~f~nVsf 1292 (1522)
T TIGR00957 1224 LSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI--------QE---TAPPSGWPPRGRVEFRNYCL 1292 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--------cC---CCCCCCCCCCCcEEEEEEEE
Confidence 34444567788899999999999999999999999986543211000 00 00000002245799999999
Q ss_pred ecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc
Q psy11400 89 GLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP 164 (298)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~ 164 (298)
+|+.+..+ +|+|+||+|++||++||+ |+| || |+++ | .++++|++|+|..+
T Consensus 1293 ~Y~~~~~~-------vL~~is~~I~~GekiaIV--------GrTGsGKSTL~~l-------L----~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957 1293 RYREDLDL-------VLRHINVTIHGGEKVGIV--------GRTGAGKSSLTLG-------L----FRINESAEGEIIID 1346 (1522)
T ss_pred EeCCCCcc-------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCccCCCCeEEEC
Confidence 99755333 999999999999999999 999 99 9998 8 99999999998632
Q ss_pred -----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-c
Q psy11400 165 -----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-W 231 (298)
Q Consensus 165 -----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~ 231 (298)
.|++|++|||+|++|++|+++||.... ..+++++.++++.+++.+++.. |+|+|+.++ .
T Consensus 1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS--------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc--------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 378899999999999999999997321 3578899999999999988766 799999876 7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
+.+||||||||++|||||+++|+|||||||||+||.++++.|.+.+++ .++|+|+||||++++..+|
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~D 1487 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT 1487 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence 789999999999999999999999999999999999999999999876 4899999999999988765
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-42 Score=328.67 Aligned_cols=234 Identities=22% Similarity=0.249 Sum_probs=191.3
Q ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400 16 KLAEAIGRLV-LAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG 94 (298)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 94 (298)
..+.++.-+. ..+.++.+...+..|+.++.+..++... + .......+..++++||+|+||+.+
T Consensus 287 ~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~---------------~-~~~~~~~~~~l~~~~vsF~y~~~~ 350 (573)
T COG4987 287 AALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF---------------P-DEQTATTGQALELRNVSFTYPGQQ 350 (573)
T ss_pred HHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC---------------C-ccccCCccceeeeccceeecCCCc
Confidence 3344454455 5556677777777777776665433211 0 001111112689999999999776
Q ss_pred CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------
Q psy11400 95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------ 164 (298)
Q Consensus 95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------ 164 (298)
++ +|+|+||++++||++||+ |+| || ++.+ + .|.|+|++|+|+..
T Consensus 351 ~~-------~L~~~~l~l~~GEkvAIl--------G~SGsGKSTllqL-------l----~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 351 TK-------ALKNFNLTLAQGEKVAIL--------GRSGSGKSTLLQL-------L----AGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred cc-------hhhccceeecCCCeEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCCeeeECCcChhh
Confidence 54 999999999999999999 999 99 8888 8 99999999998632
Q ss_pred -----CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400 165 -----PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG 237 (298)
Q Consensus 165 -----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg 237 (298)
.++.|++++|++.+|.+|+++|+.... ++.+++++.+++++++|++++.. |+|+++..+ .+..|||
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSG 477 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLAN-------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSG 477 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCc
Confidence 255799999999999999999999875 46789999999999999987754 889999876 6789999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|||||++|||+|+++.+++||||||.|||+.+|+++++.+.+ .|+|+|+||||+.-+.+.|
T Consensus 478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~d 540 (573)
T COG4987 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540 (573)
T ss_pred hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcC
Confidence 999999999999999999999999999999999999998876 4999999999998776654
No 36
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-42 Score=297.06 Aligned_cols=180 Identities=24% Similarity=0.275 Sum_probs=149.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++||+++|.+ .. +|++||++|++||+++|+ ||| || |+|+ + .++.+
T Consensus 2 mi~i~~l~K~fg~--~~-------VLkgi~l~v~~Gevv~ii--------GpSGSGKSTlLRc-------l----N~LE~ 53 (240)
T COG1126 2 MIEIKNLSKSFGD--KE-------VLKGISLSVEKGEVVVII--------GPSGSGKSTLLRC-------L----NGLEE 53 (240)
T ss_pred eEEEEeeeEEeCC--eE-------EecCcceeEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HCCcC
Confidence 5899999999953 22 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .|+++|+|||+..||+ .|+.||+.++...-....+....+.+.++|+.+||.+..+.
T Consensus 54 ~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~- 132 (240)
T COG1126 54 PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA- 132 (240)
T ss_pred CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-
Confidence 999998642 2678999999999875 79999999864211000111224556788999999776654
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~ 296 (298)
+|.+|||||||||||||||+.+|+++++|||||||||+...++.+.++ +.|.|+|+|||.+..++.
T Consensus 133 --------yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 133 --------YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred --------CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 578999999999999999999999999999999999998888777655 359999999999988763
No 37
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.7e-40 Score=361.44 Aligned_cols=256 Identities=17% Similarity=0.151 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------c--hhccc-------cCCCCCCCC
Q psy11400 9 TMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYV-------R--TMVTQ-------NGVDSLSEG 72 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~-------~--~~~~~-------~~~~~~~~~ 72 (298)
........+..++.+++..+.++.....+.+|+.++++..++.+..... + ....+ .....+...
T Consensus 1221 ~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1300 (1560)
T PTZ00243 1221 LSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAA 1300 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccC
Confidence 3344456778889999999999999999999999998643221100000 0 00000 000000000
Q ss_pred ceeecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccc
Q psy11400 73 IFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGT 148 (298)
Q Consensus 73 ~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~ 148 (298)
...+..+.|+|+||+|+|+++.++ +|+|+||+|++||++||+ |+| || |+++ +
T Consensus 1301 ~~~~~~G~I~f~nVsf~Y~~~~~~-------vL~~vsf~I~~GekVaIV--------GrTGSGKSTLl~l-------L-- 1356 (1560)
T PTZ00243 1301 PHPVQAGSLVFEGVQMRYREGLPL-------VLRGVSFRIAPREKVGIV--------GRTGSGKSTLLLT-------F-- 1356 (1560)
T ss_pred CCCCCCCeEEEEEEEEEeCCCCCc-------eeecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H--
Confidence 001123579999999999765443 999999999999999999 999 99 9998 8
Q ss_pred ccccccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 149 LRDQLWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 149 ~~~~l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
.|+++|++|+|..+ .|++|+||||+|++|++||++||.... ..+++++.++++.+++.+
T Consensus 1357 --lrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--------~~sdeeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243 1357 --MRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--------EASSAEVWAALELVGLRE 1426 (1560)
T ss_pred --hCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc--------CCCHHHHHHHHHHCCChH
Confidence 99999999998632 378899999999999999999996532 457889999999999998
Q ss_pred hhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcC-CCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400 218 ILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHR-PQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS 292 (298)
Q Consensus 218 ~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~-P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~ 292 (298)
++.. |+|+|+..+ .+.+||||||||++|||||+++ |+|||||||||+||+++++.+.+.+++ .++|+|+||||++
T Consensus 1427 ~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1427 RVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred HHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHH
Confidence 7765 899999876 7889999999999999999996 899999999999999999999998876 3899999999999
Q ss_pred hhhhcC
Q psy11400 293 LWTHHE 298 (298)
Q Consensus 293 ~~~~~~ 298 (298)
++..+|
T Consensus 1507 ti~~~D 1512 (1560)
T PTZ00243 1507 TVAQYD 1512 (1560)
T ss_pred HHHhCC
Confidence 998765
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.2e-40 Score=312.93 Aligned_cols=238 Identities=21% Similarity=0.227 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEe
Q psy11400 10 MGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLG 89 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 89 (298)
-.=++.....|+-..+..|+++..+..+..|+.+++...+.... .| ..+.-++.+.++++++.
T Consensus 281 ~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~m------------~LP~P~g~L~Ve~l~~~ 343 (580)
T COG4618 281 GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----RM------------PLPAPQGALSVERLTAA 343 (580)
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----CC------------CCCCCCceeeEeeeeec
Confidence 33455667788999999999999999999999999987654321 11 11222467999999998
Q ss_pred cCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-
Q psy11400 90 LRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP- 164 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~- 164 (298)
-|..+.+ +++++||++.+|+.++|+ ||| || |.|+ + .|+|+|.+|.|..+
T Consensus 344 PPg~~~p-------il~~isF~l~~G~~lgII--------GPSgSGKSTLaR~-------l----vG~w~p~~G~VRLDg 397 (580)
T COG4618 344 PPGQKKP-------ILKGISFALQAGEALGII--------GPSGSGKSTLARL-------L----VGIWPPTSGSVRLDG 397 (580)
T ss_pred CCCCCCc-------ceecceeEecCCceEEEE--------CCCCccHHHHHHH-------H----HcccccCCCcEEecc
Confidence 7765544 999999999999999999 999 99 9999 8 99999999998642
Q ss_pred ----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400 165 ----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI 232 (298)
Q Consensus 165 ----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~ 232 (298)
..++|||+||+..+|.|||.|||+-.. ...+.+.+.++.+..+.++++-+ |+||||..+ -+
T Consensus 398 a~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~-------~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G 470 (580)
T COG4618 398 ADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG-------EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470 (580)
T ss_pred hhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc-------ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCC
Confidence 246899999999999999999997432 24677889999999999997755 999999987 66
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhhc
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~~ 297 (298)
..||||||||+++||||+.+|.+++||||-|+||.+.|..+.+.+. +.|.|+|+||||++.....
T Consensus 471 ~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 8999999999999999999999999999999999999999887654 4699999999999987653
No 39
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=296.99 Aligned_cols=181 Identities=25% Similarity=0.306 Sum_probs=154.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++|++|+|.+. + +|+|+||+|++|++++|+ ||| || |+|+ + .|+.+
T Consensus 4 ~i~v~nl~v~y~~~-~--------vl~~i~l~v~~G~~~~ii--------GPNGaGKSTLlK~-------i----LGll~ 55 (254)
T COG1121 4 MIEVENLTVSYGNR-P--------VLEDISLSVEKGEITALI--------GPNGAGKSTLLKA-------I----LGLLK 55 (254)
T ss_pred EEEEeeeEEEECCE-e--------eeeccEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence 58999999999644 4 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC--------CCcEEEEcCcCC---CCCCCHHHHHccCCcchh-hhh--cCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTKPP--------RGKLFYVPQRPY---MTLGTLRDQVIYPHTKED-MIQ--KGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~~--------r~~i~~v~Q~~~---l~~~tv~eni~~~~~~~~-~~~--~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|+|.... +.+||||||... -|+.||+|-+.++..... ... ...+.+++.++|+.+++.++.++
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r 135 (254)
T COG1121 56 PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR 135 (254)
T ss_pred CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC
Confidence 9999987421 357999999763 467899999988743221 110 11235789999999999998887
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~ 297 (298)
+ ..+|||||+|||.|||||+++|++|+|||||+|+|+.++..+++++++ .|+||++||||++.+..|
T Consensus 136 ~---------i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 136 Q---------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred c---------ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 5 679999999999999999999999999999999999999999988765 499999999999987654
No 40
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-41 Score=304.47 Aligned_cols=184 Identities=23% Similarity=0.267 Sum_probs=155.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|++++|++.|+.... ....+++|+||+|++||+++|+ |.| || |+|+ + .++..
T Consensus 1 mI~l~~vsK~~~~~~~----~~~~al~~vsL~I~~GeI~GII--------G~SGAGKSTLiR~-------i----N~Le~ 57 (339)
T COG1135 1 MIELENVSKTFGQTGT----GTVTALDDVSLEIPKGEIFGII--------GYSGAGKSTLLRL-------I----NLLER 57 (339)
T ss_pred CeEEEeeeeeeccCCC----CceeeeccceEEEcCCcEEEEE--------cCCCCcHHHHHHH-------H----hccCC
Confidence 5899999999975210 0112999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|.. ..|++||++||++.+++ .||.+|+.||...... .+....+++.++|+.+||.+..+
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~-~k~ei~~RV~elLelVgL~dk~~ 136 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PKAEIKQRVAELLELVGLSDKAD 136 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC-CHHHHHHHHHHHHHHcCChhhhc
Confidence 99999853 23788999999999876 7999999999754321 11223467889999999987665
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+ ++.+|||||||||+|||||+.+|++|+.|||||||||++-+.|++++++ .|.||++|||.++.++.
T Consensus 137 ~---------yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ 207 (339)
T COG1135 137 R---------YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKR 207 (339)
T ss_pred c---------CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH
Confidence 5 4789999999999999999999999999999999999999999988764 59999999999998874
No 41
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-39 Score=351.72 Aligned_cols=243 Identities=17% Similarity=0.135 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400 5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL 84 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 84 (298)
....+...++..+..|+..+...+..+.++..+.+|+.++++..++.... . . ........++++
T Consensus 555 g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~---------~----~---~~~~~~~~I~~~ 618 (1495)
T PLN03232 555 ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ---------N----P---PLQPGAPAISIK 618 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc---------c----C---CcCCCCCcEEEE
Confidence 44556666777888888889999999999999999999998754321100 0 0 000112369999
Q ss_pred eeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 85 GITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 85 ~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
|++|+|+.. ..+ +|+|+||+|++|+.++|+ ||| || |+++ + .|.++|.+|
T Consensus 619 ~vsF~y~~~~~~~-------vL~~inl~i~~Ge~vaIv--------G~sGSGKSTLl~l-------L----lG~~~~~~G 672 (1495)
T PLN03232 619 NGYFSWDSKTSKP-------TLSDINLEIPVGSLVAIV--------GGTGEGKTSLISA-------M----LGELSHAET 672 (1495)
T ss_pred eeEEEcCCCCCCc-------eeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCcccCC
Confidence 999999753 222 899999999999999999 999 99 9999 8 999999998
Q ss_pred eeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400 160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG 237 (298)
Q Consensus 160 ~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg 237 (298)
.+. ..+++|+||+|+|++|++||+|||.|+. ..+++++.++++.+++.+.++. |+|++|.++ .+.+|||
T Consensus 673 ~i~-~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG 743 (1495)
T PLN03232 673 SSV-VIRGSVAYVPQVSWIFNATVRENILFGS--------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG 743 (1495)
T ss_pred CEE-EecCcEEEEcCccccccccHHHHhhcCC--------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH
Confidence 764 3567899999999999999999999975 2467789999999999876654 899999876 7889999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH-HHh--cCcEEEEEecCcchhhhcC
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-CRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~-l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
||||||+||||++++|+++||||||||||+.+++++.+. ++. .++|+|+|||+++.++..|
T Consensus 744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD 807 (1495)
T PLN03232 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMD 807 (1495)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCC
Confidence 999999999999999999999999999999999988764 343 4899999999999877653
No 42
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=291.24 Aligned_cols=178 Identities=24% Similarity=0.226 Sum_probs=150.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+.+++|++.|.. .. +|+|+||+|.+||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~i~~v~~~f~~-~~--------vl~~i~L~v~~GEfvsil--------GpSGcGKSTLLri-------i----AGL~~ 54 (248)
T COG1116 3 LLEIEGVSKSFGG-VE--------VLEDINLSVEKGEFVAIL--------GPSGCGKSTLLRL-------I----AGLEK 54 (248)
T ss_pred eEEEEeeEEEeCc-eE--------EeccceeEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5789999999964 33 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400 156 LFGGTVTKP------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228 (298)
Q Consensus 156 ~~~G~i~~~------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~ 228 (298)
|++|+|... +...++||||++.++ ..|++||+.++...... ......+.+.++++.+||..+.++
T Consensus 55 p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~-~~~e~~~~a~~~L~~VgL~~~~~~------- 126 (248)
T COG1116 55 PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK-SKAEARERAKELLELVGLAGFEDK------- 126 (248)
T ss_pred CCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc-chHhHHHHHHHHHHHcCCcchhhc-------
Confidence 999998642 356799999999876 57999999998743211 112234578899999999887766
Q ss_pred cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchhh
Q psy11400 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~~ 295 (298)
|+.+|||||||||+|||||+.+|++|+||||++|||..++..+.+. +++.++|+++|||+.+.+-
T Consensus 127 --~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 127 --YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred --CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 5899999999999999999999999999999999999988877665 4456899999999998654
No 43
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4e-40 Score=279.26 Aligned_cols=180 Identities=22% Similarity=0.201 Sum_probs=153.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+|+||+++|+.+.. +|+|+||+|++||++-++ ||| || ++|+ + .+...
T Consensus 1 mI~f~~V~k~Y~~g~~--------aL~~vs~~i~~Gef~fl~--------GpSGAGKSTllkL-------i----~~~e~ 53 (223)
T COG2884 1 MIRFENVSKAYPGGRE--------ALRDVSFHIPKGEFVFLT--------GPSGAGKSTLLKL-------I----YGEER 53 (223)
T ss_pred CeeehhhhhhcCCCch--------hhhCceEeecCceEEEEE--------CCCCCCHHHHHHH-------H----Hhhhc
Confidence 5899999999998854 999999999999999999 999 99 9999 7 88888
Q ss_pred cCCceeec--------------cCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTK--------------PPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|+.|+|.. ..|++||+||||.-+ ...|++||++||....... +..-.+++.++|+.+||.+-.+
T Consensus 54 pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~-~~~i~~rV~~~L~~VgL~~k~~ 132 (223)
T COG2884 54 PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP-PREIRRRVSEVLDLVGLKHKAR 132 (223)
T ss_pred CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC-HHHHHHHHHHHHHHhccchhhh
Confidence 99999852 137899999999875 5679999999987543211 1122467889999999987554
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
. .+.+||||||||++||||++++|++||.||||.+|||.....|++++.+ .|.||++.||+.+++..
T Consensus 133 ~---------lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 133 A---------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred c---------CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 4 3789999999999999999999999999999999999999999888765 59999999999998764
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.7e-39 Score=348.43 Aligned_cols=250 Identities=17% Similarity=0.161 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccc-hhcccc--CCCCCCCCceeecCCcEEEeeeeEec
Q psy11400 14 LVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVR-TMVTQN--GVDSLSEGIFIYRNNLRGRLGITLGL 90 (298)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~i~~~~v~~~~ 90 (298)
+..+..++.+++..+.++.....+.+|+.++.+..++........ ...... ..........-+..+.|+|+||+|+|
T Consensus 1148 ~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y 1227 (1490)
T TIGR01271 1148 AMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKY 1227 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEe
Confidence 456677788888888888898999999999886543321100000 000000 00000000001224579999999999
Q ss_pred CCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---
Q psy11400 91 RSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--- 163 (298)
Q Consensus 91 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--- 163 (298)
+.+.++ +|+|+||+|++||++||+ |+| || |+++ | .|+++ .+|+|..
T Consensus 1228 ~~~~~~-------vL~~is~~I~~GekvaIv--------GrSGsGKSTLl~l-------L----~rl~~-~~G~I~IdG~ 1280 (1490)
T TIGR01271 1228 TEAGRA-------VLQDLSFSVEGGQRVGLL--------GRTGSGKSTLLSA-------L----LRLLS-TEGEIQIDGV 1280 (1490)
T ss_pred CCCCcc-------eeeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhhcC-CCcEEEECCE
Confidence 754433 999999999999999999 999 99 8888 7 88886 7899853
Q ss_pred --------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCC
Q psy11400 164 --------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WID 233 (298)
Q Consensus 164 --------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~ 233 (298)
..|++|+||||+|++|+||+|+||.... ..+++++.++++.+++.+++.. |+|+|+..+ .+.
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~ 1352 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCC
Confidence 2478899999999999999999996421 3578899999999999987755 789999876 678
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
+||||||||++|||||+++|+|||||||||+||.+++..|.+.+++ .++|+|+||||++++..+|
T Consensus 1353 nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~D 1419 (1490)
T TIGR01271 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQ 1419 (1490)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence 9999999999999999999999999999999999999999999886 3899999999999988764
No 45
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-40 Score=288.70 Aligned_cols=184 Identities=24% Similarity=0.218 Sum_probs=150.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|..+.. ...+|+++||+|++||+++|+ ||| || |+++ + +++..|
T Consensus 2 i~~~~v~k~y~~~~~-----~~~~L~~v~l~i~~Ge~vaI~--------GpSGSGKSTLLni-------i----g~ld~p 57 (226)
T COG1136 2 IELKNVSKIYGLGGE-----KVEALKDVNLEIEAGEFVAIV--------GPSGSGKSTLLNL-------L----GGLDKP 57 (226)
T ss_pred cEEeeeEEEeccCCc-----ceEecccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCC
Confidence 578999999965431 013999999999999999999 999 99 9999 8 999999
Q ss_pred CCceeec---------------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 157 FGGTVTK---------------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 157 ~~G~i~~---------------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
++|.+.. ..+++||||||+..|. ..|+.||+.+|....... .....+.+.++++.+++.+...
T Consensus 58 t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~-~~~~~~~~~~l~~~lgl~~~~~ 136 (226)
T COG1136 58 TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS-AGRRKRAAEELLEVLGLEDRLL 136 (226)
T ss_pred CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC-hhHHHHHHHHHHHhcCChhhhc
Confidence 9999642 1356799999999875 579999999764221110 0122456778888999986554
Q ss_pred -hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 221 -REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 -~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+ ++.+|||||||||||||||+.+|++++.||||++||.++.+.+++++++ .|+|+|+||||+.++.
T Consensus 137 ~~---------~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 137 KK---------KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred cC---------CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 3 3789999999999999999999999999999999999999999888765 4889999999999887
Q ss_pred hcC
Q psy11400 296 HHE 298 (298)
Q Consensus 296 ~~~ 298 (298)
+.+
T Consensus 208 ~~d 210 (226)
T COG1136 208 YAD 210 (226)
T ss_pred hCC
Confidence 653
No 46
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.4e-39 Score=348.52 Aligned_cols=241 Identities=19% Similarity=0.148 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400 6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (298)
..++...++..+..|+..+...+..+.++..+..|+.++++..+..... + + ........|+++|
T Consensus 556 ~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~---------~----~---~~~~~~~~I~~~n 619 (1622)
T PLN03130 556 RAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP---------N----P---PLEPGLPAISIKN 619 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc---------C----C---cccCCCCceEEEe
Confidence 3445555667777888888888899999999999999998643221100 0 0 0001123599999
Q ss_pred eeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC-c
Q psy11400 86 ITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG-G 159 (298)
Q Consensus 86 v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~-G 159 (298)
++|+|+.. ..+ +|+|+||+|++|+.++|+ ||| || |+++ + .|.++|.+ |
T Consensus 620 vsf~y~~~~~~~-------vL~~inl~i~~Ge~vaIv--------G~sGSGKSTLl~l-------L----lG~~~~~~GG 673 (1622)
T PLN03130 620 GYFSWDSKAERP-------TLSNINLDVPVGSLVAIV--------GSTGEGKTSLISA-------M----LGELPPRSDA 673 (1622)
T ss_pred eEEEccCCCCCc-------eeeceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhhccCCCc
Confidence 99999743 222 899999999999999999 999 99 9999 8 99999999 8
Q ss_pred eeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400 160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG 237 (298)
Q Consensus 160 ~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg 237 (298)
+|. .+++|+||+|+|++|++||+|||.|+. ..++++..++++.+++.+.++. |+|++|.++ .+.+|||
T Consensus 674 ~I~--l~~~Iayv~Q~p~LfngTIreNI~fg~--------~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG 743 (1622)
T PLN03130 674 SVV--IRGTVAYVPQVSWIFNATVRDNILFGS--------PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743 (1622)
T ss_pred eEE--EcCeEEEEcCccccCCCCHHHHHhCCC--------cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence 987 467899999999999999999999975 2457789999999999876655 899999876 7889999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH-HHh--cCcEEEEEecCcchhhhcC
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-CRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~-l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
||||||+||||++++|+++||||||||||+.+++++.+. ++. .++|+|+|||+++.+++.|
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD 807 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVD 807 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCC
Confidence 999999999999999999999999999999999887653 443 4899999999999877654
No 47
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=302.95 Aligned_cols=246 Identities=22% Similarity=0.268 Sum_probs=212.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCcee-ecCCcEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFI-YRNNLRG 82 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 82 (298)
+++|.....++.+++.|++.+...|+++.+...-++++.++++...+....+ ...... ...+.+.
T Consensus 199 vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p--------------da~~L~~~~~g~v~ 264 (497)
T COG5265 199 VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP--------------DAPPLWPVRLGAVA 264 (497)
T ss_pred chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC--------------CCccccccccceEE
Confidence 4677778888999999999999999999999999999999998876654321 111111 2345699
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
|+||+|.|...++ +|+++||.+++|+.++++ |+| || +.++ + -++|++++
T Consensus 265 F~~V~F~y~~~r~--------iL~~isf~i~~g~tvAiV--------g~SG~gKsTI~rl-------l----fRFyD~~s 317 (497)
T COG5265 265 FINVSFAYDPRRP--------ILNGISFTIPLGKTVAIV--------GESGAGKSTILRL-------L----FRFYDVNS 317 (497)
T ss_pred EEEEEeeccccch--------hhcCccccccCccEEEEE--------eCCCCcHHHHHHH-------H----HHHhCCcC
Confidence 9999999965555 999999999999999999 999 99 8888 7 78888899
Q ss_pred ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400 159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD 226 (298)
Q Consensus 159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d 226 (298)
|.|..+ .|+-||.|||+..||+.|+..|+.|+. +..+++++..+++.++++++... |+||+
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-------~~at~eev~aaa~~aqi~~fi~~lP~gy~ 390 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-------PDATAEEVGAAAEAAQIHDFIQSLPEGYD 390 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-------ccccHHHHHHHHHHhhhhHHHHhCchhhh
Confidence 998642 367799999999999999999999985 45678899999999999988765 99999
Q ss_pred cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
+.++ ++-.|||||||||+|||+++++|++++|||+||+||..+|+.|...+++ .|.|.++|+||++++-..
T Consensus 391 t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~a 464 (497)
T COG5265 391 TGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDA 464 (497)
T ss_pred cccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCC
Confidence 9987 7889999999999999999999999999999999999999999999886 599999999999987543
No 48
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-38 Score=344.49 Aligned_cols=242 Identities=18% Similarity=0.218 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC-
Q psy11400 16 KLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG- 94 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~- 94 (298)
..+..++.+...+..++...++..|+.++++..++.+.. ...... .....|+|+||+|+|+...
T Consensus 333 ~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~--------------~~~~~~-~~~~~I~~~nVsf~Y~~~~~ 397 (1466)
T PTZ00265 333 ISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN--------------DDGKKL-KDIKKIQFKNVRFHYDTRKD 397 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--------------CCCccC-CCCCcEEEEEEEEEcCCCCC
Confidence 334445566667788889999999999998754432210 000000 1113599999999998532
Q ss_pred CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-c-----
Q psy11400 95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-P----- 164 (298)
Q Consensus 95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-~----- 164 (298)
.+ +|+|+||+|++|++++|+ ||| || |+++ + .|+++|++|+|.. .
T Consensus 398 ~~-------vL~~isl~i~~Ge~vaIv--------G~SGsGKSTLl~l-------L----~gl~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 398 VE-------IYKDLNFTLTEGKTYAFV--------GESGCGKSTILKL-------I----ERLYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred Cc-------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhccCCCCeEEEeCCcchh
Confidence 22 999999999999999999 999 99 9999 8 9999999999864 1
Q ss_pred ------CCCcEEEEcCcCCCCCCCHHHHHccCCcch--------------------------------------------
Q psy11400 165 ------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKE-------------------------------------------- 194 (298)
Q Consensus 165 ------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-------------------------------------------- 194 (298)
.|++|+||||+|.+|++|++|||.++....
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531 (1466)
T ss_pred hCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccch
Confidence 256799999999999999999999863100
Q ss_pred -hhh-----hcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCC
Q psy11400 195 -DMI-----QKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266 (298)
Q Consensus 195 -~~~-----~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD 266 (298)
+.. ....+++++.++++.+++++++.+ |+|++|..+ .+.+||||||||++|||||+++|++||||||||+||
T Consensus 532 ~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD 611 (1466)
T PTZ00265 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611 (1466)
T ss_pred hhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 000 012456789999999999988755 899999876 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CcEEEEEecCcchhhhcC
Q psy11400 267 VDVEGSMYEYCREV----GITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 267 ~~~~~~i~~~l~~~----~~TiIiitH~l~~~~~~~ 298 (298)
+.++..+.+.+++. |+|+|+||||+++++..|
T Consensus 612 ~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD 647 (1466)
T PTZ00265 612 NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYAN 647 (1466)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCC
Confidence 99999999888753 799999999999887543
No 49
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.6e-38 Score=315.44 Aligned_cols=247 Identities=12% Similarity=0.085 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400 5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL 84 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 84 (298)
..+..+.-.+..+..|+..+...+.+++...++.+|+.++++...+..... . ................+.++++
T Consensus 268 g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~i~~~ 341 (555)
T TIGR01194 268 AAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL--E----LSDADNVLLLAHDKSVDSIELK 341 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--c----ccccccccccccCCCCceEEEE
Confidence 345555566677889999999999999999999999999987532211000 0 0000000000000112469999
Q ss_pred eeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 85 GITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 85 ~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
||+|+|++. ..+ +|+|+||++++|++++|+ ||| || |+++ + .|+++|+
T Consensus 342 ~v~f~y~~~~~~~~~-------~l~~vs~~i~~G~~~aiv--------G~sGsGKSTl~~l-------l----~g~~~p~ 395 (555)
T TIGR01194 342 DVHMNPKAPEGSEGF-------ALGPIDLRIAQGDIVFIV--------GENGCGKSTLAKL-------F----CGLYIPQ 395 (555)
T ss_pred EEEEEeCCCCCCcCc-------eeccceEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCC
Confidence 999999742 112 899999999999999999 999 99 9999 8 9999999
Q ss_pred Cceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCc
Q psy11400 158 GGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGW 225 (298)
Q Consensus 158 ~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 225 (298)
+|+|... .+++++||+|++++|++|+++|. . +..+++++.++++.++++++.+. |+|+
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-G---------EHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc-c---------cchhHHHHHHHHHHcCCchhhccccccc
Confidence 9998531 25679999999999999999984 1 12456778999999999987765 8888
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-H---hcCcEEEEEecCcchhhhc
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-R---EVGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~---~~~~TiIiitH~l~~~~~~ 297 (298)
++. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+ + ..++|+|+||||+++++..
T Consensus 466 ~t~----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~ 537 (555)
T TIGR01194 466 STT----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537 (555)
T ss_pred CCc----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 874 789999999999999999999999999999999999999987643 2 3489999999999877654
No 50
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.9e-38 Score=310.78 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCC
Q psy11400 16 KLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGL 95 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 95 (298)
.+..|+..+...+.+++....+.+|+.++.+...+.+. ..... ....+.++++||+|+|+++.+
T Consensus 274 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~---------------~~~~~-~~~~~~i~~~~v~f~y~~~~~ 337 (547)
T PRK10522 274 FLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF---------------PRPQA-FPDWQTLELRNVTFAYQDNGF 337 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc---------------ccccc-cCcCceEEEEEEEEEeCCCCe
Confidence 45678888888888999999999999987643211100 00000 011236999999999985444
Q ss_pred CCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------
Q psy11400 96 GFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-------- 163 (298)
Q Consensus 96 ~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-------- 163 (298)
+|+|+||+|++|++++|+ ||| || |+++ + .|+++|++|+|..
T Consensus 338 --------~l~~i~~~i~~G~~~aiv--------G~sGsGKSTL~~l-------l----~g~~~~~~G~i~~~g~~~~~~ 390 (547)
T PRK10522 338 --------SVGPINLTIKRGELLFLI--------GGNGSGKSTLAML-------L----TGLYQPQSGEILLDGKPVTAE 390 (547)
T ss_pred --------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCeEEEECCEECCCC
Confidence 899999999999999999 999 99 9999 8 9999999999853
Q ss_pred ---cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHH
Q psy11400 164 ---PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEK 240 (298)
Q Consensus 164 ---~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqk 240 (298)
..+++|+||||++++|++|+++| +. ..+++++.++++.+++.+..+.+++.. .+.+||||||
T Consensus 391 ~~~~~~~~i~~v~q~~~lf~~ti~~n---~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~----~G~~LSgGq~ 455 (547)
T PRK10522 391 QPEDYRKLFSAVFTDFHLFDQLLGPE---GK--------PANPALVEKWLERLKMAHKLELEDGRI----SNLKLSKGQK 455 (547)
T ss_pred CHHHHhhheEEEecChhHHHHhhccc---cC--------chHHHHHHHHHHHcCCchhhhccccCC----CCCCCCHHHH
Confidence 13578999999999999999988 11 234667888999999876554332211 2578999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhhcC
Q psy11400 241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~~~ 298 (298)
||++||||++++|+++|||||||+||+++++.+.+.+.+ .++|+|+||||++..+..|
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 999999999999999999999999999999998876642 3899999999998876543
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-39 Score=275.49 Aligned_cols=182 Identities=23% Similarity=0.189 Sum_probs=143.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|.+ .. +|+|||++|++++++|++ ||| || ++|+ + .++.
T Consensus 6 ~~~~~~~l~~yYg~-~~--------aL~~i~l~i~~~~VTAlI--------GPSGcGKST~LR~-------l----NRmn 57 (253)
T COG1117 6 PAIEVRDLNLYYGD-KH--------ALKDINLDIPKNKVTALI--------GPSGCGKSTLLRC-------L----NRMN 57 (253)
T ss_pred ceeEecceeEEECc-hh--------hhccCceeccCCceEEEE--------CCCCcCHHHHHHH-------H----Hhhc
Confidence 35889999999963 33 999999999999999999 999 99 8888 4 4444
Q ss_pred ccCC-----ceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 PLFG-----GTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~~~~-----G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
.... |+|.. ..|++||+|||.|..|+.||+||+.|+....+... ..-++.+++.|+.+.|.
T Consensus 58 dl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLW 136 (253)
T COG1117 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALW 136 (253)
T ss_pred ccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhH
Confidence 3333 55531 23789999999999999999999999875433222 22345678888888886
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~ 294 (298)
+.++ |.+.+.+..||||||||+||||||+.+|++|+||||||||||.+..+|-+++.+ .+.|||+|||++.-+
T Consensus 137 dEVK-----DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 137 DEVK-----DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred HHhH-----HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 5442 122234668999999999999999999999999999999999887777776654 378999999998644
No 52
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.9e-38 Score=282.69 Aligned_cols=181 Identities=27% Similarity=0.281 Sum_probs=152.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|++|.|+ +.. +++|+||+|++|++++|+ ||| || |+|+ + .|+.+
T Consensus 2 ~L~~~~ls~~y~-~~~--------il~~ls~~i~~G~i~~ii--------GpNG~GKSTLLk~-------l----~g~l~ 53 (258)
T COG1120 2 MLEVENLSFGYG-GKP--------ILDDLSFSIPKGEITGIL--------GPNGSGKSTLLKC-------L----AGLLK 53 (258)
T ss_pred eeEEEEEEEEEC-Cee--------EEecceEEecCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 478999999996 344 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhc--C-CCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQK--G-ITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~--~-~~~~~i~~~l~~~~l~~~~~ 220 (298)
|.+|+|... ..++++||||.+.. +..||+|-+.++..+...... . .+.+.+.++++.+++.++.+
T Consensus 54 p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~ 133 (258)
T COG1120 54 PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133 (258)
T ss_pred CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc
Confidence 999998642 24689999999865 456999999988654211111 1 12346888999999999988
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
++ ..+||||||||+.|||||+++|++|+||||||+||...+-++++++++ .|+|+|+|.||++.+..
T Consensus 134 r~---------~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r 204 (258)
T COG1120 134 RP---------VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR 204 (258)
T ss_pred Cc---------ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 75 679999999999999999999999999999999999999888887764 48999999999997765
Q ss_pred c
Q psy11400 297 H 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 205 y 205 (258)
T COG1120 205 Y 205 (258)
T ss_pred h
Confidence 4
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=279.22 Aligned_cols=178 Identities=21% Similarity=0.197 Sum_probs=148.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+|+|||+.|. +.. +++|+||+|++||++.++ ||| || ++|+ + .++.+
T Consensus 1 MI~~~nvsk~y~-~~~--------av~~v~l~I~~gef~vli--------GpSGsGKTTtLkM-------I----NrLie 52 (309)
T COG1125 1 MIEFENVSKRYG-NKK--------AVDDVNLTIEEGEFLVLI--------GPSGSGKTTTLKM-------I----NRLIE 52 (309)
T ss_pred CceeeeeehhcC-Cce--------eeeeeeEEecCCeEEEEE--------CCCCCcHHHHHHH-------H----hcccC
Confidence 589999999996 333 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec-----------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch--hhhh
Q psy11400 156 LFGGTVTK-----------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY--ILNR 221 (298)
Q Consensus 156 ~~~G~i~~-----------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~ 221 (298)
|++|+|.. ..|++||||-|..-+| +.||.|||.+-.....+ .+...+++++++++.++|+. +.+|
T Consensus 53 pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w-~k~~i~~r~~ELl~lvgL~p~~~~~R 131 (309)
T COG1125 53 PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW-DKERIKKRADELLDLVGLDPSEYADR 131 (309)
T ss_pred CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHhCCCHHHHhhc
Confidence 99999853 2478999999999876 57999999864322111 11223567889999999973 6666
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~l~~~~ 295 (298)
++++|||||||||.+||||+.+|++++||||++||||.++..+.+.++ +.++|+|+||||++.+-
T Consensus 132 ---------yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~ 200 (309)
T COG1125 132 ---------YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL 200 (309)
T ss_pred ---------CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH
Confidence 478999999999999999999999999999999999998888776543 46999999999998653
No 54
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=273.69 Aligned_cols=181 Identities=26% Similarity=0.293 Sum_probs=151.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. ++++++||||+|.+||+++|+ |+| || |.++ + +|+.+
T Consensus 3 ~l~v~nl~~~y~~~~~-----~~~~l~~VS~~i~~Ge~lgiv--------GeSGsGKSTL~r~-------l----~Gl~~ 58 (252)
T COG1124 3 LLSVRNLSIVYGGGKF-----AFHALNNVSLEIERGETLGIV--------GESGSGKSTLARL-------L----AGLEK 58 (252)
T ss_pred eEEEeceEEEecCCcc-----hhhhhcceeEEecCCCEEEEE--------cCCCCCHHHHHHH-------H----hcccC
Confidence 5899999999976542 224999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCC---CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYM---TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-IL 219 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~ 219 (298)
|+.|+|... .++.|.+|||||+- +..||++.|.-|..... ......++.++++.+|+.. ++
T Consensus 59 p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~~l 135 (252)
T COG1124 59 PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPSFL 135 (252)
T ss_pred CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHHHH
Confidence 999998642 25679999999973 34699998877654311 1223456899999999974 55
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++ ++.+|||||+||+||||||..+|++||||||||+||...+..+++++.+ .+.|+|+||||++++.
T Consensus 136 ~R---------~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~ 206 (252)
T COG1124 136 DR---------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVE 206 (252)
T ss_pred hc---------CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHH
Confidence 55 4789999999999999999999999999999999999999999887654 5889999999999887
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
|
T Consensus 207 ~ 207 (252)
T COG1124 207 H 207 (252)
T ss_pred H
Confidence 6
No 55
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=274.78 Aligned_cols=182 Identities=18% Similarity=0.201 Sum_probs=153.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++||+..||++.. +|+||||+|++||+++|+ |+| || |+|+ + .|+++
T Consensus 3 ~i~~~nl~k~yp~~~~--------aL~~Vnl~I~~GE~VaiI--------G~SGaGKSTLLR~-------l----ngl~d 55 (258)
T COG3638 3 MIEVKNLSKTYPGGHQ--------ALKDVNLEINQGEMVAII--------GPSGAGKSTLLRS-------L----NGLVD 55 (258)
T ss_pred eEEEeeeeeecCCCce--------eeeeEeEEeCCCcEEEEE--------CCCCCcHHHHHHH-------H----hcccC
Confidence 6899999999997666 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec--------------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhh-----hh--cCCCHHHHHHHHHHc
Q psy11400 156 LFGGTVTK--------------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDM-----IQ--KGITDADLTEYLQKV 213 (298)
Q Consensus 156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~-----~~--~~~~~~~i~~~l~~~ 213 (298)
|++|+|.. ..|++|||+||++.+. ..|+.+|++.+...+.. .. ...+...+.++|+.+
T Consensus 56 ~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv 135 (258)
T COG3638 56 PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135 (258)
T ss_pred CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999852 2367899999999886 46999999876432110 00 112345677889999
Q ss_pred CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH 289 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH 289 (298)
|+.+..-.+ .++|||||||||+|||||+++|++++.|||+++|||.+.+.+++.+++ .|.|+|+.-|
T Consensus 136 gi~~~A~qr---------a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH 206 (258)
T COG3638 136 GILDKAYQR---------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206 (258)
T ss_pred CcHHHHHHH---------hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEec
Confidence 997655332 579999999999999999999999999999999999999999988765 4899999999
Q ss_pred Ccchhhhc
Q psy11400 290 RKSLWTHH 297 (298)
Q Consensus 290 ~l~~~~~~ 297 (298)
++++++.|
T Consensus 207 ~vdlA~~Y 214 (258)
T COG3638 207 QVDLAKKY 214 (258)
T ss_pred hHHHHHHH
Confidence 99998765
No 56
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-38 Score=275.22 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=146.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|++++|+++|.+ +. +++|+||+|++||+++|+ |+| || |+|+ + .|++
T Consensus 7 ~~I~vr~v~~~fG~-~~--------Ild~v~l~V~~Gei~~ii--------GgSGsGKStlLr~-------I----~Gll 58 (263)
T COG1127 7 PLIEVRGVTKSFGD-RV--------ILDGVDLDVPRGEILAIL--------GGSGSGKSTLLRL-------I----LGLL 58 (263)
T ss_pred ceEEEeeeeeecCC-EE--------EecCceeeecCCcEEEEE--------CCCCcCHHHHHHH-------H----hccC
Confidence 46999999999953 34 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-
Q psy11400 155 PLFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI- 218 (298)
Q Consensus 155 ~~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~- 218 (298)
+|++|+|.. ..++++|++||...||. .||+||+.||........+..-++-+...++.+||...
T Consensus 59 ~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~ 138 (263)
T COG1127 59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA 138 (263)
T ss_pred CCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh
Confidence 999999853 13678999999999885 69999999987432211111112334456788888754
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.++ .+++|||||++|++||||++.+|+++++|||||||||.+...+-+++++ .+.|+|+||||++.+
T Consensus 139 ~~~---------~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 139 ADL---------YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL 209 (263)
T ss_pred hhh---------CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH
Confidence 444 4789999999999999999999999999999999999877766665543 599999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 210 ~ 210 (263)
T COG1127 210 L 210 (263)
T ss_pred H
Confidence 4
No 57
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-38 Score=279.49 Aligned_cols=180 Identities=25% Similarity=0.291 Sum_probs=153.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++.++|++|.|+++.. +++|+||+|++|+.++|+ |+| || |+++ + +|+.+
T Consensus 3 ~i~~~~l~~~y~~~~~--------~l~~v~~~i~~Ge~~~i~--------G~nGsGKSTL~~~-------l----~GLl~ 55 (235)
T COG1122 3 MIEAENLSFRYPGRKA--------ALKDVSLEIEKGERVLLI--------GPNGSGKSTLLKL-------L----NGLLK 55 (235)
T ss_pred eEEEEEEEEEcCCCce--------eeeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCcCc
Confidence 5889999999986633 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec------------cCCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTK------------PPRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~------------~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|.|.. ..++++|||+|+| .+|..||.|.+.|+........ ...++++.++++.+++.++.++
T Consensus 56 p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~-~e~~~rv~~~l~~vgl~~~~~r 134 (235)
T COG1122 56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR-EEIEERVAEALELVGLEELLDR 134 (235)
T ss_pred CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH-HHHHHHHHHHHHHcCchhhccC
Confidence 99999842 2367899999999 4678899999999864221111 1124668899999999888766
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+ +.+|||||||||+||.+|+.+|++||||||||+||+...+.+.+.+++ .|+|+|++|||++.+..
T Consensus 135 ~---------p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 135 P---------PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred C---------ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence 4 789999999999999999999999999999999999999999888765 26899999999987754
No 58
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-37 Score=291.16 Aligned_cols=179 Identities=23% Similarity=0.255 Sum_probs=150.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||+++|. +.. +++|+||+|++||+++++ ||| || ++|+ | +|+.
T Consensus 4 ~~l~i~~v~k~yg-~~~--------av~~isl~i~~Gef~~lL--------GPSGcGKTTlLR~-------I----AGfe 55 (352)
T COG3842 4 PALEIRNVSKSFG-DFT--------AVDDISLDIKKGEFVTLL--------GPSGCGKTTLLRM-------I----AGFE 55 (352)
T ss_pred ceEEEEeeeeecC-Cee--------EEecceeeecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 3589999999996 334 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeec---------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 155 PLFGGTVTK---------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 155 ~~~~G~i~~---------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
.|++|+|.. +.++.|++|||+..|| +.||+|||.||.............+++.++++.+++.++.++.
T Consensus 56 ~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-- 133 (352)
T COG3842 56 QPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-- 133 (352)
T ss_pred CCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC--
Confidence 999999853 2367899999999887 5799999999985211101111235789999999999888774
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLW 294 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~ 294 (298)
+.+|||||||||||||||+.+|++|+||||.|+||...+..+... .++.|+|.|+||||.+.+
T Consensus 134 -------p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA 200 (352)
T COG3842 134 -------PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA 200 (352)
T ss_pred -------hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 789999999999999999999999999999999999877666544 445699999999998754
No 59
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.9e-37 Score=270.08 Aligned_cols=180 Identities=21% Similarity=0.219 Sum_probs=147.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+++..+ +++|+||++++|++++|+ ||| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~~~~~-------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 54 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP-------ALDNLNFHITKGEMVFLV--------GHSGAGKSTFLKL-------I----LGIEK 54 (216)
T ss_pred CeEEEEEEEEecCCCee-------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 37899999999643222 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .+++++|+||++.++. .|++||+.++...... ......+++.++++.+++.+..+
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~ 133 (216)
T TIGR00960 55 PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAH 133 (216)
T ss_pred CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhh
Confidence 999997531 1346999999998775 6999999875311000 00112356788899999977665
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
++ +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+.
T Consensus 134 ~~---------~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 134 AL---------PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred CC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 53 579999999999999999999999999999999999999999888765 3899999999998765
No 60
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-37 Score=284.86 Aligned_cols=177 Identities=22% Similarity=0.228 Sum_probs=149.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++||++.|.+. . +++|+||+|+.||+++++ ||| || ++|+ + +|+.+
T Consensus 3 ~i~l~~v~K~yg~~-~--------~l~~i~l~i~~Gef~vll--------GPSGcGKSTlLr~-------I----AGLe~ 54 (338)
T COG3839 3 ELELKNVRKSFGSF-E--------VLKDVNLDIEDGEFVVLL--------GPSGCGKSTLLRM-------I----AGLEE 54 (338)
T ss_pred EEEEeeeEEEcCCc-e--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 58999999999532 2 799999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec---------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTK---------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~---------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|.. +..++|++|||+..+| .+||+|||.||...... .+...++++.++++.+++.+++++.
T Consensus 55 ~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~-~k~ei~~rV~eva~~L~l~~lL~r~--- 130 (338)
T COG3839 55 PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV-PKAEIDKRVKEVAKLLGLEHLLNRK--- 130 (338)
T ss_pred CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC-chHHHHHHHHHHHHHcCChhHHhcC---
Confidence 99999853 3467899999999876 57999999999753211 1122357889999999999999874
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLW 294 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~ 294 (298)
+.+|||||||||||||||+++|++++||||+|+||...+..+... .++.+.|+|.||||...+
T Consensus 131 ------P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA 197 (338)
T COG3839 131 ------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA 197 (338)
T ss_pred ------cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH
Confidence 789999999999999999999999999999999999877665544 344689999999998654
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9e-37 Score=287.12 Aligned_cols=181 Identities=25% Similarity=0.270 Sum_probs=149.4
Q ss_pred cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+|+++||++.|+.+ ... +|+|+||+|++||+++|+ |+| || |+++ + .|+
T Consensus 1 mI~~~~lsk~y~~~~~~~~-------~L~~vsl~i~~Gei~gIi--------G~sGaGKSTLlr~-------I----~gl 54 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQ-------ALNNVSLHVPAGQIYGVI--------GASGAGKSTLIRC-------V----NLL 54 (343)
T ss_pred CEEEEEEEEEECCCCcceE-------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence 47899999999632 122 999999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 154 WPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
++|++|+|... .+++|+|+||++.++. .|++||+.++...... ......+++.++++.+++.+.
T Consensus 55 ~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~e~l~~vgL~~~ 133 (343)
T TIGR02314 55 ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEIKRKVTELLALVGLGDK 133 (343)
T ss_pred CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchh
Confidence 99999997521 2567999999998874 7999999886421100 011123467788999999877
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.+++ +.+|||||||||+|||||+.+|++||||||||+||+.+...+++++++ .|+|+|+|||+++.+
T Consensus 134 ~~~~---------~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 134 HDSY---------PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV 204 (343)
T ss_pred hhCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 6653 689999999999999999999999999999999999999999888765 389999999999987
Q ss_pred hh
Q psy11400 295 TH 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 205 ~~ 206 (343)
T TIGR02314 205 KR 206 (343)
T ss_pred HH
Confidence 53
No 62
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.4e-36 Score=273.77 Aligned_cols=182 Identities=19% Similarity=0.178 Sum_probs=156.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++|+++.|+.+..+ +|+|+||+|++||+++|+ |+| || |+++ | .|+++
T Consensus 2 ~i~~~nls~~~~~~~~~-------~l~~isl~I~~Ge~~~Iv--------G~nGsGKSTLl~~-------L----~gl~~ 55 (275)
T cd03289 2 QMTVKDLTAKYTEGGNA-------VLENISFSISPGQRVGLL--------GRTGSGKSTLLSA-------F----LRLLN 55 (275)
T ss_pred eEEEEEEEEEeCCCCCc-------ceeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhhcC
Confidence 48899999999754432 899999999999999999 999 99 9999 8 88887
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~ 223 (298)
.+|+|... .++.|+|+||+|.+|++|+++|+.+.. ...++++.++++.+++.++.++ +.
T Consensus 56 -~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~--------~~~~~~~~~~l~~~gL~~~~~~~p~ 126 (275)
T cd03289 56 -TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG--------KWSDEEIWKVAEEVGLKSVIEQFPG 126 (275)
T ss_pred -CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc--------CCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 78987531 256799999999999999999996321 1345678899999999887766 67
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
++++... .+..||||||||++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|+||||++.+..
T Consensus 127 ~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~ 202 (275)
T cd03289 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE 202 (275)
T ss_pred cccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence 7888754 6789999999999999999999999999999999999999999998875 37999999999987754
No 63
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-35 Score=321.41 Aligned_cols=236 Identities=19% Similarity=0.173 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCcee-ecCCcEEEeeeeEec
Q psy11400 12 RMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFI-YRNNLRGRLGITLGL 90 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 90 (298)
.++..+..|+..+......+.++..+..|+.++++..++..... . ..... .....++++|++|.|
T Consensus 581 ~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-------------~-~~~~~~~~~~~i~~~~~~~~~ 646 (1522)
T TIGR00957 581 ALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI-------------E-RRTIKPGEGNSITVHNATFTW 646 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-------------c-ccccCCCCCCcEEEEEeEEEc
Confidence 44556678888999999999999999999999986543211000 0 00000 011369999999999
Q ss_pred CCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCC
Q psy11400 91 RSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPR 166 (298)
Q Consensus 91 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r 166 (298)
+....+ +|+|+||+|++|+.++|+ ||| || |+++ + .|+++|++|+|...
T Consensus 647 ~~~~~~-------~l~~isl~i~~G~~v~Iv--------G~~GsGKSTLl~~-------l----~g~~~~~~G~i~~~-- 698 (1522)
T TIGR00957 647 ARDLPP-------TLNGITFSIPEGALVAVV--------GQVGCGKSSLLSA-------L----LAEMDKVEGHVHMK-- 698 (1522)
T ss_pred CCCCCc-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCccCCcEEEEC--
Confidence 754332 999999999999999999 999 99 9999 8 99999999999764
Q ss_pred CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHH
Q psy11400 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVA 244 (298)
Q Consensus 167 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRla 244 (298)
.+|+||||+|+++++|++|||.++.. .++++..++++.+++.+.++. |.|++|..+ .+.+||||||||++
T Consensus 699 g~i~yv~Q~~~l~~~Ti~eNI~~g~~--------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRia 770 (1522)
T TIGR00957 699 GSVAYVPQQAWIQNDSLRENILFGKA--------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVS 770 (1522)
T ss_pred CEEEEEcCCccccCCcHHHHhhcCCc--------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHH
Confidence 47999999999999999999998742 234556777888888765554 778888765 78899999999999
Q ss_pred HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-----cCcEEEEEecCcchhhhc
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-----VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-----~~~TiIiitH~l~~~~~~ 297 (298)
||||++++|++++||||||+||+.+++.+.+.+.+ .++|+|+|||+++.++..
T Consensus 771 LARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 771 LARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 99999999999999999999999999999987742 379999999999887654
No 64
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-36 Score=263.19 Aligned_cols=173 Identities=21% Similarity=0.241 Sum_probs=144.8
Q ss_pred EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
+++|+++.|+++.. +++|+||++++|++++|+ ||| || |+++ + +|+.+|+
T Consensus 1 ~~~~l~~~~~~~~~--------~l~~v~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p~ 53 (205)
T cd03226 1 RIENISFSYKKGTE--------ILDDLSLDLYAGEIIALT--------GKNGAGKTTLAKI-------L----AGLIKES 53 (205)
T ss_pred CcccEEEEeCCcCc--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCC
Confidence 36789999964233 899999999999999999 999 99 9999 8 9999999
Q ss_pred Cceeecc--------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 158 GGTVTKP--------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 158 ~G~i~~~--------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
+|+|... .+++++|+||++. ++..|++||+.++... .....+++.++++.+++.++.+++
T Consensus 54 ~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~----- 123 (205)
T cd03226 54 SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-----LDAGNEQAETVLKDLDLYALKERH----- 123 (205)
T ss_pred ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh-----cCccHHHHHHHHHHcCCchhcCCC-----
Confidence 9998532 2357999999983 5678999999875421 112235688899999997765543
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+.
T Consensus 124 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 124 ----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999888765 3899999999998764
No 65
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=285.46 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=148.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~i~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~ll--------G~sGsGKSTLLr~-------i----aGl~~ 55 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQ--------VIKGIDLDVADGEFIVLV--------GPSGCGKSTLLRM-------V----AGLER 55 (356)
T ss_pred EEEEEeEEEEeCCCCE--------EEeeeeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HCCCC
Confidence 4899999999953334 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .++.|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.++.
T Consensus 56 p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~--- 131 (356)
T PRK11650 56 ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM-PKAEIEERVAEAARILELEPLLDRK--- 131 (356)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhHhhCC---
Confidence 999998532 2467999999998875 6999999987531100 0011135678899999998877764
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|+||||||+||+.+++.+.+.+++ .++|+|+|||+++.+.
T Consensus 132 ------~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 199 (356)
T PRK11650 132 ------PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAM 199 (356)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988876654 4899999999998654
No 66
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-36 Score=269.34 Aligned_cols=178 Identities=23% Similarity=0.200 Sum_probs=144.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~p 52 (235)
T cd03261 1 IELRGLTKSFGG-RT--------VLKGVDLDVRRGEILAII--------GPSGSGKSTLLRL-------I----VGLLRP 52 (235)
T ss_pred CeEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999953 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 157 FGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 157 ~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
++|+|... .++.|+|+||++.++. .|++||+.++.............+++.++++.+++.+..++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 132 (235)
T cd03261 53 DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL 132 (235)
T ss_pred CceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 99997521 1356999999998876 59999998753110000000113456788999998766554
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+ +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|||+|||+++.+.
T Consensus 133 ~---------~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 133 Y---------PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred C---------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 3 679999999999999999999999999999999999999999888765 3799999999998764
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.2e-36 Score=266.00 Aligned_cols=178 Identities=25% Similarity=0.263 Sum_probs=145.2
Q ss_pred EEEeeeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 81 RGRLGITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 81 i~~~~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
++++||++.|+++ .. +++|+||++++|++++|+ ||| || |+++ + +|+
T Consensus 1 l~~~~l~~~~~~~~~~~~--------il~~~s~~i~~G~~~~l~--------G~nGsGKSTLl~~-------i----~Gl 53 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQ--------ALKGVSLSIEKGEFVAIV--------GPSGSGKSTLLNI-------L----GGL 53 (218)
T ss_pred CeEeeeEEEecCCCccee--------EEeeeEEEEcCCCEEEEE--------cCCCCCHHHHHHH-------H----hCC
Confidence 4689999999642 23 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 154 WPLFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 154 ~~~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
++|++|+|... .++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+
T Consensus 54 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~ 132 (218)
T cd03255 54 DRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGV-PKKERRERAEELLERVGLGD 132 (218)
T ss_pred cCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCch
Confidence 99999998521 1346999999998876 4999999875321100 00012346788899999977
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
..++. +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.
T Consensus 133 ~~~~~---------~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 133 RLNHY---------PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred hhhcC---------hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 66553 679999999999999999999999999999999999999999887764 37899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 204 ~~ 205 (218)
T cd03255 204 AE 205 (218)
T ss_pred Hh
Confidence 64
No 68
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.6e-35 Score=264.95 Aligned_cols=182 Identities=21% Similarity=0.285 Sum_probs=148.9
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+.+..+ +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 i~~~~l~~~~~~~~~~-------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 54 (237)
T cd03252 1 ITFEHVRFRYKPDGPV-------ILDNISLRIKPGEVVGIV--------GRSGSGKSTLTKL-------I----QRFYVP 54 (237)
T ss_pred CEEEEEEEecCCCCcc-------ceeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCC
Confidence 4689999999643322 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG 224 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 224 (298)
++|+|... .++.++|+||++.++..|+.||+.++.. ......+.+.++..++.++++. +.+
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~-------~~~~~~~~~~~~~~~~~~~l~~l~~~ 127 (237)
T cd03252 55 ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADP-------GMSMERVIEAAKLAGAHDFISELPEG 127 (237)
T ss_pred CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCC-------CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99998532 1456999999998888899999987532 1223445566666777666554 334
Q ss_pred ccccc-ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 225 WDTVA-DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~-~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
+++.. ..+.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+.
T Consensus 128 ~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 128 YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred ccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 55443 36789999999999999999999999999999999999999999988865 3799999999998764
No 69
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-35 Score=258.71 Aligned_cols=180 Identities=25% Similarity=0.302 Sum_probs=149.7
Q ss_pred EEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 81 RGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 81 i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
++++||++.|++.. .. +++|+||+|++|++++|+ ||| || |+++ + +|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~-------il~~~s~~i~~G~~~~i~--------G~nG~GKSTLl~~-------i----~G~ 54 (204)
T cd03250 1 ISVEDASFTWDSGEQETSF-------TLKDINLEVPKGELVAIV--------GPVGSGKSSLLSA-------L----LGE 54 (204)
T ss_pred CEEeEEEEecCCCCccccc-------eeeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCc
Confidence 46899999996532 12 999999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-c
Q psy11400 154 WPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-W 231 (298)
Q Consensus 154 ~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~ 231 (298)
++|++|+|.... +|+|+||+|.+++.|++||+.++.. ...+...++++.+++.+.++. +.|+++..+ +
T Consensus 55 ~~~~~G~i~~~g--~i~~~~q~~~l~~~t~~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 124 (204)
T cd03250 55 LEKLSGSVSVPG--SIAYVSQEPWIQNGTIRENILFGKP--------FDEERYEKVIKACALEPDLEILPDGDLTEIGEK 124 (204)
T ss_pred CCCCCCeEEEcC--EEEEEecCchhccCcHHHHhccCCC--------cCHHHHHHHHHHcCcHHHHHhccCcccceecCC
Confidence 999999997654 7999999999999999999998642 123445667777788766654 456666544 6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH-HHHh---cCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE-YCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~-~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+.+||+|||||++|||||+.+|+++||||||++||+...+.+.+ ++++ .+.|+|++||+++.+..
T Consensus 125 ~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 78999999999999999999999999999999999999888876 3432 37999999999987654
No 70
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-35 Score=260.97 Aligned_cols=183 Identities=23% Similarity=0.298 Sum_probs=155.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|+.+..+ +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~~~~~-------~l~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 55 (221)
T cd03244 2 DIEFKNVSLRYRPNLPP-------VLKNISFSIKPGEKVGIV--------GRTGSGKSSLLLA-------L----FRLVE 55 (221)
T ss_pred cEEEEEEEEecCCCCcc-------cccceEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCCC
Confidence 47899999999754322 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~ 223 (298)
|++|+|... .++.++|+||++.++..|++||+.+.. ....+++.++++.+++.+.+++ +.
T Consensus 56 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~--------~~~~~~~~~~~~~~~l~~~~~~l~~ 127 (221)
T cd03244 56 LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG--------EYSDEELWQALERVGLKEFVESLPG 127 (221)
T ss_pred CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCC--------CCCHHHHHHHHHHhCcHHHHHhccc
Confidence 999998531 246799999999988889999997532 1235567888899999877665 66
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
|+++... ++..||+|||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..
T Consensus 128 ~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred ccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 7777654 7889999999999999999999999999999999999999999998876 37899999999987653
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-36 Score=265.38 Aligned_cols=178 Identities=25% Similarity=0.204 Sum_probs=145.6
Q ss_pred EEEeeeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 81 RGRLGITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 81 i~~~~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
++++|+++.|++. .. +++|+||+|++|++++|+ ||| || |+++ + +|+
T Consensus 1 l~~~~l~~~~~~~~~~~~--------il~~vs~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl 53 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVT--------ALEDISLSVEEGEFVALV--------GPSGCGKSTLLRI-------I----AGL 53 (220)
T ss_pred CeEEEEEEEcCCCCcceE--------EEeceeEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 4689999999642 23 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 154 WPLFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 154 ~~~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|++|+|... .++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+..+++
T Consensus 54 ~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---- 128 (220)
T cd03293 54 ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAY---- 128 (220)
T ss_pred CCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCC----
Confidence 99999998642 2467999999998776 6999999865311000 0011235677889999997666553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .++|+|++||+++.+.
T Consensus 129 -----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (220)
T cd03293 129 -----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAV 196 (220)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 578999999999999999999999999999999999999999888764 3789999999998653
No 72
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.1e-35 Score=260.10 Aligned_cols=183 Identities=26% Similarity=0.323 Sum_probs=152.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|+++... +++|+||+|++|++++|+ ||| || |+++ + .|+.+
T Consensus 2 ~l~~~~l~~~~~~~~~~-------~l~~i~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------i----~G~~~ 55 (220)
T cd03245 2 RIEFRNVSFSYPNQEIP-------ALDNVSLTIRAGEKVAII--------GRVGSGKSTLLKL-------L----AGLYK 55 (220)
T ss_pred eEEEEEEEEEcCCCCcc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcC
Confidence 37899999999643222 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~ 223 (298)
|++|+|... .++.++|+||++.++..|+.||+.+... .....++.++++.+++.+.+++ +.
T Consensus 56 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~ 128 (220)
T cd03245 56 PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP-------LADDERILRAAELAGVTDFVNKHPN 128 (220)
T ss_pred CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCC-------CCCHHHHHHHHHHcCcHHHHHhccc
Confidence 999998532 1346999999998887899999987532 1234567788899999877765 45
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
++++... .+.+||||||||++||||++.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+.
T Consensus 129 ~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred cccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 6666543 56899999999999999999999999999999999999999999988763 479999999998754
No 73
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.4e-36 Score=263.89 Aligned_cols=179 Identities=23% Similarity=0.254 Sum_probs=146.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. +++|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~~~~--------il~~is~~i~~G~~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~ 53 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA--------ALHDVSLHIRKGEFLFLT--------GPSGAGKTTLLKL-------L----YGALT 53 (214)
T ss_pred CEEEEeeeEEeCCCce--------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999953333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.+..+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~ 132 (214)
T TIGR02673 54 PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKAD 132 (214)
T ss_pred CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhh
Confidence 999997521 1357999999998775 699999986421100 000112356788899999876555
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
++ +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+.
T Consensus 133 ~~---------~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 133 AF---------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred CC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 43 579999999999999999999999999999999999999999888765 4899999999998765
No 74
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-36 Score=264.22 Aligned_cols=177 Identities=27% Similarity=0.262 Sum_probs=144.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~p 52 (213)
T cd03259 1 LELKGLSKTYGS-VR--------ALDDLSLTVEPGEFLALL--------GPSGCGKTTLLRL-------I----AGLERP 52 (213)
T ss_pred CeeeeeEEEeCC-ee--------eecceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+..+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---- 127 (213)
T cd03259 53 DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-PKAEIRARVRELLELVGLEGLLNRY---- 127 (213)
T ss_pred CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhcC----
Confidence 99998532 2357999999998764 6999999864311000 0011234577889999997766553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|||++||+++.+.
T Consensus 128 -----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 128 -----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL 195 (213)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 578999999999999999999999999999999999999999888765 3899999999998654
No 75
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-36 Score=266.16 Aligned_cols=181 Identities=23% Similarity=0.241 Sum_probs=146.8
Q ss_pred cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+++++||++.|+.+. .+ +++|+||+|++|++++|+ ||| || |+++ + +|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~~-------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl 58 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTD-------VLHNVSFSIGEGEMMAIV--------GSSGSGKSTLLHL-------L----GGL 58 (233)
T ss_pred eEEEEeEEEEcCCCCccee-------eEEeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence 589999999997432 22 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 154 WPLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 154 ~~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
++|++|+|.... ++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+
T Consensus 59 ~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~ 137 (233)
T PRK11629 59 DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRALEMLAAVGLEH 137 (233)
T ss_pred CCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCch
Confidence 999999975311 246999999998775 5999999864211000 00112346788899999976
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
..++. +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.
T Consensus 138 ~~~~~---------~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 138 RANHR---------PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred hhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 65543 678999999999999999999999999999999999999999887764 37999999999987
Q ss_pred hhh
Q psy11400 294 WTH 296 (298)
Q Consensus 294 ~~~ 296 (298)
+..
T Consensus 209 ~~~ 211 (233)
T PRK11629 209 AKR 211 (233)
T ss_pred HHh
Confidence 654
No 76
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-35 Score=262.44 Aligned_cols=183 Identities=23% Similarity=0.282 Sum_probs=152.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++... +++|+||++++|++++|+ ||| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~~~~--------~l~~isl~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 54 (229)
T cd03254 2 EIEFENVNFSYDEKKP--------VLKDINFSIKPGETVAIV--------GPTGAGKTTLINL-------L----MRFYD 54 (229)
T ss_pred eEEEEEEEEecCCCCc--------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcC
Confidence 4789999999964334 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~ 223 (298)
|++|+|... .++.++|+||++.++..|++||+.++.. .....++.++++.+++.++.++ +.
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (229)
T cd03254 55 PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP-------NATDEEVIEAAKEAGAHDFIMKLPN 127 (229)
T ss_pred CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCC-------CCCHHHHHHHHHHhChHHHHHhCcc
Confidence 999998532 2456999999998888899999987532 1234566777888888777665 34
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
|+++..+ ++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..
T Consensus 128 ~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred cccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 5665543 6789999999999999999999999999999999999999999888765 37999999999987643
No 77
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.9e-36 Score=262.78 Aligned_cols=177 Identities=28% Similarity=0.365 Sum_probs=144.4
Q ss_pred EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
+++||++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+++|+
T Consensus 1 ~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~p~ 52 (213)
T cd03235 1 EVEDLTVSYGG-HP--------VLEDVSFEVKPGEFLAIV--------GPNGAGKSTLLKA-------I----LGLLKPT 52 (213)
T ss_pred CcccceeEECC-EE--------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCCCC
Confidence 36789999963 33 899999999999999999 999 99 9999 8 9999999
Q ss_pred CceeeccC------CCcEEEEcCcCCC---CCCCHHHHHccCCcchhhh---hcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 158 GGTVTKPP------RGKLFYVPQRPYM---TLGTLRDQVIYPHTKEDMI---QKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 158 ~G~i~~~~------r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
+|+|.... +++++|+||++.+ +..|++||+.++....... ......+++.++++.+++.+..+++
T Consensus 53 ~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--- 129 (213)
T cd03235 53 SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ--- 129 (213)
T ss_pred CCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC---
Confidence 99986432 4679999999875 4579999998754211000 0011234678889999997666553
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+.
T Consensus 130 ------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 130 ------IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVL 196 (213)
T ss_pred ------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999998887764 4789999999998764
No 78
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=9.8e-36 Score=262.95 Aligned_cols=182 Identities=22% Similarity=0.226 Sum_probs=146.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++... ..++++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~v~~~~~~~~~-----~~~il~~~sl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (218)
T cd03266 1 MITADALTKRFRDVKK-----TVQAVDGVSFTVKPGEVTGLL--------GPNGAGKTTTLRM-------L----AGLLE 56 (218)
T ss_pred CeEEEEEEEecCCCCc-----cceeecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence 3789999999964310 001899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+|... .++.++|+||++.++. .|++||+.+....... ......+++.++++.+++.+..+++
T Consensus 57 ~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-- 133 (218)
T cd03266 57 PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRR-- 133 (218)
T ss_pred CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhh--
Confidence 999998532 2457999999998876 5999999764211000 0011234677889999997766553
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|+|||+++.+.
T Consensus 134 -------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 134 -------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred -------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999888765 3799999999998654
No 79
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-36 Score=270.30 Aligned_cols=179 Identities=22% Similarity=0.230 Sum_probs=150.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++|+++.|+. .. +++||||+|+.||.+|+. ||| || |+|+ + +|+..
T Consensus 2 ~i~i~~~~~~~~~-~~--------a~~di~l~i~~Ge~vaLl--------GpSGaGKsTlLRi-------I----AGLe~ 53 (345)
T COG1118 2 SIRINNVKKRFGA-FG--------ALDDISLDIKSGELVALL--------GPSGAGKSTLLRI-------I----AGLET 53 (345)
T ss_pred ceeehhhhhhccc-cc--------ccccceeeecCCcEEEEE--------CCCCCcHHHHHHH-------H----hCcCC
Confidence 4788899888853 22 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhh-hhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDM-IQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|+.|.|... ..++||||||+..+| .+||.+||.|+...... ......+.++.++|+.++|+.+.++
T Consensus 54 p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r 133 (345)
T COG1118 54 PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR 133 (345)
T ss_pred CCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc
Confidence 999998531 246799999999876 58999999999754311 1112235678899999999988877
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
. +.+||||||||||+||||+.+|++|+||||+++||...++.+.+.+++ .|.|+++||||.+.+.
T Consensus 134 y---------P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~ 202 (345)
T COG1118 134 Y---------PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202 (345)
T ss_pred C---------chhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH
Confidence 4 789999999999999999999999999999999999888877766654 5999999999998664
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=271.55 Aligned_cols=179 Identities=21% Similarity=0.243 Sum_probs=147.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|+.+.. +++|+||+|++||+++|+ |+| || |+++ + .|+++
T Consensus 4 ~l~~~~l~~~~~~~~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK--------ALKGLSLSIPEGSKTALL--------GPNGAGKSTLLLH-------L----NGIYL 56 (274)
T ss_pred eEEEEEEEEEeCCCCe--------eeeeEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCC
Confidence 5899999999964334 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .++.|+|+||+| .++..|+.+|+.++...... ......+++.++++.+++.+..+++
T Consensus 57 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~ 135 (274)
T PRK13647 57 PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL-DKDEVERRVEEALKAVRMWDFRDKP 135 (274)
T ss_pred CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHHHhcCC
Confidence 999998532 135699999998 46778999999875311000 0011134577889999997766553
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|+|||++||+++.+.
T Consensus 136 ---------~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 136 ---------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred ---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999888764 3899999999999764
No 81
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9.5e-36 Score=262.14 Aligned_cols=178 Identities=21% Similarity=0.207 Sum_probs=145.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+++.. +++|+||++++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~~~~--------~l~~~sl~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 53 (214)
T cd03292 1 IEFINVTKTYPNGTA--------ALDGINISISAGEFVFLV--------GPSGAGKSTLLKL-------I----YKEELP 53 (214)
T ss_pred CEEEEEEEEeCCCce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence 468999999964334 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 157 FGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 157 ~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
++|+|... .++.++|+||++.++. .|++||+.++..... .......+++.++++.+++.+..++
T Consensus 54 ~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~ 132 (214)
T cd03292 54 TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHRA 132 (214)
T ss_pred CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhC
Confidence 99997421 1346999999998876 599999987531100 0001123457788999998766554
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+ +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 133 ~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 133 L---------PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred C---------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3 578999999999999999999999999999999999999999888764 3799999999998765
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.3e-35 Score=264.72 Aligned_cols=180 Identities=19% Similarity=0.227 Sum_probs=145.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+.+.. +++|+||++++|++++|+ ||| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~~~~--------il~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 53 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ--------ALKNINLNINPGEFVAII--------GPSGAGKSTLLRC-------I----NRLVE 53 (243)
T ss_pred CeEEEeeeeecCCCcc--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence 3789999999962333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-----hh--hcCCCHHHHHHHHHHc
Q psy11400 156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-----MI--QKGITDADLTEYLQKV 213 (298)
Q Consensus 156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-----~~--~~~~~~~~i~~~l~~~ 213 (298)
|++|+|... .+++++|+||++.++. .|++||+.++..... .. ......+++.++++.+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (243)
T TIGR02315 54 PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133 (243)
T ss_pred CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc
Confidence 999997531 1356999999998765 699999987532100 00 0011234677888999
Q ss_pred CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH 289 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH 289 (298)
++.+..+++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||
T Consensus 134 ~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 134 GLADKAYQR---------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred CcHhhhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 887665543 679999999999999999999999999999999999999988887764 3789999999
Q ss_pred Ccchhh
Q psy11400 290 RKSLWT 295 (298)
Q Consensus 290 ~l~~~~ 295 (298)
+++.+.
T Consensus 205 ~~~~~~ 210 (243)
T TIGR02315 205 QVDLAK 210 (243)
T ss_pred CHHHHH
Confidence 998764
No 83
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-35 Score=261.78 Aligned_cols=180 Identities=22% Similarity=0.199 Sum_probs=145.0
Q ss_pred EEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 81 RGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 81 i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
++++||++.|+++. .+ +++|+||++++|++++|+ ||| || |+++ + +|++
T Consensus 2 l~~~~v~~~~~~~~~~~~-------~l~~isl~i~~G~~~~i~--------G~nGsGKSTLl~~-------i----~G~~ 55 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTR-------VLKGVSLSIGKGEIVAIV--------GSSGSGKSTLLHL-------L----GGLD 55 (221)
T ss_pred EEEEeeeEEccCCCcceE-------eEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 68999999996421 22 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 155 PLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 155 ~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
+|++|+|.... ++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+.
T Consensus 56 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~ 134 (221)
T TIGR02211 56 NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK-SVKEAKERAYEMLEKVGLEHR 134 (221)
T ss_pred CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhh
Confidence 99999985310 146999999998774 6999999764211000 000113456788999998766
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.+++ +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+
T Consensus 135 ~~~~---------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 135 INHR---------PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred hhCC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 5553 579999999999999999999999999999999999999999887764 379999999999876
Q ss_pred hh
Q psy11400 295 TH 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 206 ~~ 207 (221)
T TIGR02211 206 KK 207 (221)
T ss_pred hh
Confidence 54
No 84
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-35 Score=264.56 Aligned_cols=179 Identities=22% Similarity=0.228 Sum_probs=145.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +++|+||++++|++++|+ ||| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 53 (239)
T cd03296 2 SIEVRNVSKRFGD-FV--------ALDDVSLDIPSGELVALL--------GPSGSGKTTLLRL-------I----AGLER 53 (239)
T ss_pred EEEEEeEEEEECC-EE--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4789999999964 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh---hcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI---QKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .++.++|+||+|.++. .|+.||+.++....... ......+.+.++++.+++.+..+++
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 133 (239)
T cd03296 54 PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133 (239)
T ss_pred CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 999997531 1356999999998775 69999998753211000 0001124567889999987665553
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 134 ---------~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 201 (239)
T cd03296 134 ---------PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEAL 201 (239)
T ss_pred ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999888764 3789999999998654
No 85
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=279.17 Aligned_cols=180 Identities=24% Similarity=0.266 Sum_probs=147.2
Q ss_pred cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+++++||+++|+.+ ..+ +++|+||+|++|++++|+ ||| || |+++ + +|+
T Consensus 1 mi~i~~l~~~y~~~~~~~~-------il~~vsl~i~~Gei~~ii--------G~nGsGKSTLlk~-------L----~Gl 54 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIH-------ALNNVSLHIPAGEIFGVI--------GASGAGKSTLIRC-------I----NLL 54 (343)
T ss_pred CEEEEeEEEEeCCCCCceE-------EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCC
Confidence 47899999999621 222 999999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 154 WPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
++|++|+|... .+++|+|+||++.++. .|++||+.++...... ......+++.++++.+++.+.
T Consensus 55 ~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~ 133 (343)
T PRK11153 55 ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDK 133 (343)
T ss_pred CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchh
Confidence 99999997531 1457999999998775 7999999875321100 000113467788999999776
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.+++ +.+||||||||++|||||+++|++|||||||++||+.+...+.+++++ .|+|+|++||+++.+
T Consensus 134 ~~~~---------~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i 204 (343)
T PRK11153 134 ADRY---------PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV 204 (343)
T ss_pred hhCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 6553 679999999999999999999999999999999999999999888765 379999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 205 ~ 205 (343)
T PRK11153 205 K 205 (343)
T ss_pred H
Confidence 4
No 86
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.5e-35 Score=249.09 Aligned_cols=149 Identities=45% Similarity=0.820 Sum_probs=134.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|++++|+++.. +++|+||++++|++++|+ |+| || |+++ + .|+++|
T Consensus 1 i~~~~~~~~~~~~~~--------~l~~i~l~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 53 (166)
T cd03223 1 IELENLSLATPDGRV--------LLKDLSFEIKPGDRLLIT--------GPSGTGKSSLFRA-------L----AGLWPW 53 (166)
T ss_pred CEEEEEEEEcCCCCe--------eeecCeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence 468999999964434 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS 236 (298)
++|+|....+++++|++|++.++..|++||+.++ ++.+||
T Consensus 54 ~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----------------------------------------~~~~LS 93 (166)
T cd03223 54 GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----------------------------------------WDDVLS 93 (166)
T ss_pred CCceEEECCCceEEEECCCCccccccHHHHhhcc----------------------------------------CCCCCC
Confidence 9999987766789999999988888999998752 135899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+++.+.|+|++||+++....
T Consensus 94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~ 153 (166)
T cd03223 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKF 153 (166)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhh
Confidence 999999999999999999999999999999999999999998888999999999876543
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=264.92 Aligned_cols=173 Identities=23% Similarity=0.160 Sum_probs=147.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|+++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|++
T Consensus 11 ~~l~i~~l~~~~~~-~~--------il~~isl~i~~Ge~~~I~--------G~NGsGKSTLlk~-------l----~Gl~ 62 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RT--------VLNQLDLHIPAGQFVAVV--------GRSGCGKSTLLRL-------L----AGLE 62 (257)
T ss_pred CcEEEEEEEEEECC-cc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 45899999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 155 PLFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 155 ~~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
+|++|+|... .++.++|+||++.++. .|++||+.++.. ....+++.++++.+++.+..+++
T Consensus 63 ~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~----- 130 (257)
T PRK11247 63 TPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK-------GQWRDAALQALAAVGLADRANEW----- 130 (257)
T ss_pred CCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc-------chHHHHHHHHHHHcCChhHhcCC-----
Confidence 9999998632 2467999999998776 699999987531 11245678889999997665543
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+.
T Consensus 131 ----~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~ 198 (257)
T PRK11247 131 ----PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAV 198 (257)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988887754 3799999999998754
No 88
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-35 Score=279.00 Aligned_cols=179 Identities=25% Similarity=0.249 Sum_probs=149.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+|+++|+++.|++ .. +|+|+||+|++||+++|+ ||| || |+++ | +|+.
T Consensus 5 ~~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------I----aGl~ 56 (351)
T PRK11432 5 NFVVLKNITKRFGS-NT--------VIDNLNLTIKQGTMVTLL--------GPSGCGKTTVLRL-------V----AGLE 56 (351)
T ss_pred cEEEEEeEEEEECC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HCCC
Confidence 36899999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 155 PLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 155 ~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
+|++|+|... .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.++.
T Consensus 57 ~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~-- 133 (351)
T PRK11432 57 KPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRY-- 133 (351)
T ss_pred CCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCC--
Confidence 9999998532 2467999999998875 6999999987521100 0111235678899999998777663
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|+||||||+||+..+..+.+.+++ .++|+|+|||+++.+.
T Consensus 134 -------~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~ 201 (351)
T PRK11432 134 -------VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAF 201 (351)
T ss_pred -------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 4899999999998753
No 89
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-35 Score=260.26 Aligned_cols=182 Identities=27% Similarity=0.361 Sum_probs=151.3
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+++.. +++|+||+|++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~~~~--------~l~~i~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~~ 53 (236)
T cd03253 1 IEFENVTFAYDPGRP--------VLKDVSFTIPAGKKVAIV--------GPSGSGKSTILRL-------L----FRFYDV 53 (236)
T ss_pred CEEEEEEEEeCCCCc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCC
Confidence 468999999964444 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG 224 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 224 (298)
++|+|... .++.++|+||++.++..|++||+.++.. ......+.+.++.+++.+..+. +.+
T Consensus 54 ~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~ 126 (236)
T cd03253 54 SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP-------DATDEEVIEAAKAAQIHDKIMRFPDG 126 (236)
T ss_pred CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCC-------CCCHHHHHHHHHHcCcHHHHHhcccc
Confidence 99998532 1356999999999888999999987642 1234456667777787766554 446
Q ss_pred cccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
+++... ++.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+..
T Consensus 127 ~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 127 YDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred ccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 666544 67899999999999999999999999999999999999999998887653 7899999999987643
No 90
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-35 Score=271.13 Aligned_cols=182 Identities=20% Similarity=0.161 Sum_probs=144.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|+.... ...++|+|+||+|++||+++|+ |+| || |+++ + .|+.+|
T Consensus 3 l~~~~l~~~y~~~~~----~~~~~l~~vs~~i~~Ge~~~i~--------G~nGaGKSTLl~~-------l----~Gl~~p 59 (287)
T PRK13637 3 IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLI--------GHTGSGKSTLIQH-------L----NGLLKP 59 (287)
T ss_pred EEEEEEEEECCCCCc----cccceeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCC
Confidence 789999999964210 0002999999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc--hhh
Q psy11400 157 FGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG--YIL 219 (298)
Q Consensus 157 ~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~ 219 (298)
++|+|... .+++|+||||+| .++..|++||+.++...... ......+++.++++.+++. ++.
T Consensus 60 ~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~ 138 (287)
T PRK13637 60 TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIENRVKRAMNIVGLDYEDYK 138 (287)
T ss_pred CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC-CHHHHHHHHHHHHHHcCCCchhhc
Confidence 99998421 135799999998 45678999999875311000 0011124577889999986 344
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++ .+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|.|||++||+++.+.
T Consensus 139 ~~---------~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~ 209 (287)
T PRK13637 139 DK---------SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVA 209 (287)
T ss_pred cC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 43 3689999999999999999999999999999999999999999888754 3899999999998764
No 91
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.8e-35 Score=257.53 Aligned_cols=173 Identities=22% Similarity=0.163 Sum_probs=146.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|++++|++ .. +++|+||++++|++++|+ |+| || |+++ + +|+.+|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~~~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 52 (208)
T cd03268 1 LKTNDLTKTYGK-KR--------VLDDISLHVKKGEIYGFL--------GPNGAGKTTTMKI-------I----LGLIKP 52 (208)
T ss_pred CEEEEEEEEECC-eE--------eEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcCC
Confidence 468999999953 33 999999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++ ..|++||+.++... .....+++.++++.+++.+..+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~---- 123 (208)
T cd03268 53 DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL-----LGIRKKRIDEVLDVVGLKDSAKKK---- 123 (208)
T ss_pred CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh-----cCCcHHHHHHHHHHcCCHHHHhhh----
Confidence 99998542 135699999999776 57999999775311 112356788899999998766553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 124 -----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 124 -----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred -----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 678999999999999999999999999999999999999999888765 4799999999998764
No 92
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.7e-35 Score=259.27 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=144.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+. .. +++|+||+|++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 i~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (213)
T cd03301 1 VELENVTKRFGN-VT--------ALDDLNLDIADGEFVVLL--------GPSGCGKTTTLRM-------I----AGLEEP 52 (213)
T ss_pred CEEEeeEEEECC-ee--------eeeceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++. .|++||+.++..... .......+++.++++.+++.+..+++
T Consensus 53 ~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~---- 127 (213)
T cd03301 53 TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRK---- 127 (213)
T ss_pred CceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCC----
Confidence 99997531 2346999999998774 699999987531100 00011234567888999987666553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 128 -----~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 128 -----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999887764 3799999999998754
No 93
>KOG0054|consensus
Probab=100.00 E-value=5.6e-35 Score=307.82 Aligned_cols=240 Identities=19% Similarity=0.194 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCC
Q psy11400 14 LVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSG 93 (298)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~ 93 (298)
.+++.+.+.|++....++..-..+.+|+.+..+.+++ . +.... .. ...+-=+.++.|+|+|++.+|..+
T Consensus 1083 al~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~--p~~~~----~~----~pp~~WP~~G~I~f~~~~~RYrp~ 1151 (1381)
T KOG0054|consen 1083 ALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-A--PLEIE----ES----RPPPSWPSKGEIEFEDLSLRYRPN 1151 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-C--CCCCc----CC----CCCCCCCCCCeEEEEEeEEEeCCC
Confidence 3566777888888888888888888999888886654 1 11000 00 000111346789999999999655
Q ss_pred CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec------
Q psy11400 94 GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------ 163 (298)
Q Consensus 94 ~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------ 163 (298)
.+. ||+|+||+|++||+++|| |.+ || |... | -++..|.+|+|..
T Consensus 1152 lp~-------VLk~is~~I~p~eKVGIV--------GRTGaGKSSL~~a-------L----FRl~e~~~G~I~IDgvdI~ 1205 (1381)
T KOG0054|consen 1152 LPL-------VLKGISFTIKPGEKVGIV--------GRTGAGKSSLILA-------L----FRLVEPAEGEILIDGVDIS 1205 (1381)
T ss_pred Ccc-------hhcCceEEEcCCceEEEe--------CCCCCCHHHHHHH-------H----HHhcCccCCeEEEcCeecc
Confidence 443 999999999999999999 999 99 7666 5 6677788999853
Q ss_pred -----cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCC
Q psy11400 164 -----PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLS 236 (298)
Q Consensus 164 -----~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LS 236 (298)
+.|++++++||||.+|+||+|.|+--. ...+|+++.++|+.++|.+.+.+ |.|+|..+. .|.++|
T Consensus 1206 ~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1206 KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred cccHHHHHhcCeeeCCCCceecCccccccCcc--------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 248899999999999999999998532 25689999999999999987754 888999865 788999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
-||||.+|+||||+++++||+|||+|+++|+++...|.+.+++ .++|||.|+||++++-..|
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~D 1341 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSD 1341 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcC
Confidence 9999999999999999999999999999999999999999987 4999999999999886543
No 94
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.8e-35 Score=260.16 Aligned_cols=180 Identities=21% Similarity=0.195 Sum_probs=145.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. +++|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 53 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ--------ALQGVTFHMRPGEMAFLT--------GHSGAGKSTLLKL-------I----CGIER 53 (222)
T ss_pred CEEEEeeEEEecCCCe--------EEeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999953333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc--------------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP--------------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.++|+||++.+ +..|++||+.++...... ......+++.++++.+++.+..+
T Consensus 54 ~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~ 132 (222)
T PRK10908 54 PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA-SGDDIRRRVSAALDKVGLLDKAK 132 (222)
T ss_pred CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCChhhhh
Confidence 999997521 13579999999976 457999999875311000 00011235677888998876655
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
++ +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..
T Consensus 133 ~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 133 NF---------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred CC---------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 43 679999999999999999999999999999999999999988887764 37899999999987653
No 95
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-35 Score=262.41 Aligned_cols=179 Identities=20% Similarity=0.209 Sum_probs=144.5
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|+++.. +++|+||++++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~~~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 53 (241)
T cd03256 1 IEVENLSKTYPNGKK--------ALKDVSLSINPGEFVALI--------GPSGAGKSTLLRC-------L----NGLVEP 53 (241)
T ss_pred CEEeeEEEecCCccE--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcCC
Confidence 468999999964233 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch-----hhh--hcCCCHHHHHHHHHHcC
Q psy11400 157 FGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-----DMI--QKGITDADLTEYLQKVQ 214 (298)
Q Consensus 157 ~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~--~~~~~~~~i~~~l~~~~ 214 (298)
++|+|... .++.++|+||++.++. .|+++|+.++.... ... ......+++.++++.++
T Consensus 54 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (241)
T cd03256 54 TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG 133 (241)
T ss_pred CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcC
Confidence 99987521 1346999999998765 69999998753210 000 00112345778889998
Q ss_pred CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR 290 (298)
Q Consensus 215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~ 290 (298)
+.+..++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+
T Consensus 134 l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 134 LLDKAYQ---------RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred ChhhhCC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8765544 3679999999999999999999999999999999999999998887764 38999999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
++.+.
T Consensus 205 ~~~~~ 209 (241)
T cd03256 205 VDLAR 209 (241)
T ss_pred HHHHH
Confidence 98765
No 96
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.1e-35 Score=279.17 Aligned_cols=178 Identities=24% Similarity=0.229 Sum_probs=149.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +|+|+||++++||+++|+ ||| || |+++ | +|+.+
T Consensus 4 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------GpsGsGKSTLLr~-------i----aGl~~ 55 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FT--------ALKDISLSVKKGEFVCLL--------GPSGCGKTTLLRI-------I----AGLER 55 (353)
T ss_pred EEEEEEEEEEeCC-eE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HCCCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .++.|+||||++.+|+ .|++||+.|+...... ......+++.++++.++|.++.++.
T Consensus 56 p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~--- 131 (353)
T TIGR03265 56 QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKY--- 131 (353)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCC---
Confidence 999998632 2467999999998875 7999999987421100 0011245688999999998877764
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++++||||||+||+.++..+.+.+++ .+.|+|+|||+++.+.
T Consensus 132 ------~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~ 199 (353)
T TIGR03265 132 ------PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEAL 199 (353)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 4899999999998653
No 97
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-35 Score=258.98 Aligned_cols=178 Identities=25% Similarity=0.293 Sum_probs=142.5
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
++|+++.|+++... +++|+||++++|++++|+ ||| || |+++ + .|+++|++
T Consensus 2 ~~~l~~~~~~~~~~-------il~~vs~~i~~G~~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~~~ 55 (211)
T cd03225 2 LKNLSFSYPDGARP-------ALDDISLTIKKGEFVLIV--------GPNGSGKSTLLRL-------L----NGLLGPTS 55 (211)
T ss_pred ceeEEEecCCCCee-------eecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCC
Confidence 67899999642222 899999999999999999 999 99 9999 8 99999999
Q ss_pred ceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 159 GTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 159 G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|+|... .++.|+|+||++. ++..|++||+.++..... .......+++.++++.+++.+..+++
T Consensus 56 G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~--- 131 (211)
T cd03225 56 GEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEALELVGLEGLRDRS--- 131 (211)
T ss_pred ceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCcHhhhcCC---
Confidence 998531 1357999999983 567899999976421100 00001134567788899987665543
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+..
T Consensus 132 ------~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 132 ------PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred ------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 679999999999999999999999999999999999999999888764 37899999999987653
No 98
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4e-35 Score=260.68 Aligned_cols=179 Identities=24% Similarity=0.227 Sum_probs=144.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW-- 154 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~-- 154 (298)
++++||++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|++
T Consensus 1 i~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~ 52 (227)
T cd03260 1 IELRDLNVYYGD-KH--------ALKDISLDIPKGEITALI--------GPSGCGKSTLLRL-------L----NRLNDL 52 (227)
T ss_pred CEEEEEEEEcCC-ce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhccc
Confidence 468999999963 33 899999999999999999 999 99 9999 8 9998
Q ss_pred ---ccCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 155 ---PLFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 155 ---~~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
+|++|+|... .+++++|+||++.++..|++||+.++.............+++.++++.+++.+.
T Consensus 53 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 132 (227)
T cd03260 53 IPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE 132 (227)
T ss_pred ccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH
Confidence 8999997421 135699999999888789999998753211000000023467788999998765
Q ss_pred hhhcCCccccccc-CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 219 LNREKGWDTVADW-IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 219 ~~~~~g~d~~~~~-~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
.++. . +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++. .+|+|++||+++.+.
T Consensus 133 ~~~~--------~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 204 (227)
T cd03260 133 VKDR--------LHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAA 204 (227)
T ss_pred Hhcc--------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHH
Confidence 5442 1 4799999999999999999999999999999999999999999888753 379999999998754
No 99
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-35 Score=262.45 Aligned_cols=179 Identities=22% Similarity=0.257 Sum_probs=146.1
Q ss_pred cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
+++++|+++.|++.. + +++|+||+|++||+++|+ ||| || |+++ + +|
T Consensus 1 ~i~~~~l~~~~~~~~~~~~--------il~~~s~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G 53 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVT--------ALKDVSLSVPKGEIFGII--------GRSGAGKSTLIRC-------I----NG 53 (233)
T ss_pred CeEEecceEEccCCCCcee--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hC
Confidence 378999999996431 3 999999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 153 LWPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 153 l~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
+++|++|+|... .++.++|+||++.++. .|++||+.++..... .......+.+.++++.+++.+
T Consensus 54 ~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~ 132 (233)
T cd03258 54 LERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG-VPKAEIEERVLELLELVGLED 132 (233)
T ss_pred CCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChh
Confidence 999999997521 1356999999998876 699999976421100 000111345778899999876
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
..+++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.
T Consensus 133 ~~~~~---------~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 133 KADAY---------PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred hhhcC---------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 65553 679999999999999999999999999999999999999999888764 37999999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 204 ~~ 205 (233)
T cd03258 204 VK 205 (233)
T ss_pred HH
Confidence 64
No 100
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-35 Score=273.98 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=145.7
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.+.++++|+++.|+.+..+ +|+|+||+|++||+++|+ |+| || |+++ | .|+
T Consensus 78 ~~~i~~~nls~~y~~~~~~-------~L~~is~~I~~Ge~v~Iv--------G~~GsGKSTLl~~-------L----~g~ 131 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKH-------VLHDLNLDIKRNKVTAFI--------GPSGCGKSTFLRN-------L----NQL 131 (329)
T ss_pred CceEEEEeeEEEecCCCce-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 4579999999999643332 899999999999999999 999 99 9998 7 777
Q ss_pred cc-----cCCceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WP-----LFGGTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~-----~~~G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
.+ |++|+|.. ..++.++||||+|++|++|++||+.|+.............+.+.++++.+++
T Consensus 132 ~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L 211 (329)
T PRK14257 132 NDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL 211 (329)
T ss_pred ccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC
Confidence 75 46888642 2356799999999999999999998752110000000011235667888877
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
.+.++ +.....+.+||||||||++||||++.+|+++||||||+|||+.+...+.+.+++ .++|+|+|||+++.
T Consensus 212 ~~~l~-----~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~ 286 (329)
T PRK14257 212 WDEVK-----DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286 (329)
T ss_pred cchhh-----hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 43221 112235789999999999999999999999999999999999999998888765 37999999999998
Q ss_pred hhh
Q psy11400 294 WTH 296 (298)
Q Consensus 294 ~~~ 296 (298)
+..
T Consensus 287 i~~ 289 (329)
T PRK14257 287 AQR 289 (329)
T ss_pred HHH
Confidence 754
No 101
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.9e-35 Score=262.93 Aligned_cols=179 Identities=23% Similarity=0.249 Sum_probs=144.3
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~~ 52 (236)
T cd03219 1 LEVRGLTKRFGG-LV--------ALDDVSFSVRPGEIHGLI--------GPNGAGKTTLFNL-------I----SGFLRP 52 (236)
T ss_pred CeeeeeEEEECC-EE--------EecCceEEecCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh---------hcCCCHHHHHHHHHHcC
Q psy11400 157 FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI---------QKGITDADLTEYLQKVQ 214 (298)
Q Consensus 157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~---------~~~~~~~~i~~~l~~~~ 214 (298)
++|+|... .+..++|+||++.++. .|++||+.++....... ......+.+.++++.++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (236)
T cd03219 53 TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG 132 (236)
T ss_pred CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcC
Confidence 99997531 1346999999998876 49999998753211000 00011345678888888
Q ss_pred CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK 291 (298)
Q Consensus 215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l 291 (298)
+.+..+++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||++
T Consensus 133 l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 133 LADLADRP---------AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred ccchhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 87655443 679999999999999999999999999999999999999999888764 479999999999
Q ss_pred chhhh
Q psy11400 292 SLWTH 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
+.+..
T Consensus 204 ~~~~~ 208 (236)
T cd03219 204 DVVMS 208 (236)
T ss_pred HHHHH
Confidence 87643
No 102
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.8e-35 Score=258.13 Aligned_cols=178 Identities=23% Similarity=0.236 Sum_probs=144.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|++ .. +++++||++++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~~s~~i~~G~~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (213)
T cd03262 1 IEIKNLHKSFGD-FH--------VLKGIDLTVKKGEVVVII--------GPSGSGKSTLLRC-------I----NLLEEP 52 (213)
T ss_pred CEEEEEEEEECC-eE--------eecCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999964 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 157 FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 157 ~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
++|+|... .++.++|+||++.++. .|++||+.++.............+++.++++.+++.+..+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 132 (213)
T cd03262 53 DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY 132 (213)
T ss_pred CCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC
Confidence 99987521 1356999999998775 699999987531000000011234567888888887666553
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 133 ---------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 133 ---------PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred ---------ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999888765 3789999999998764
No 103
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-35 Score=272.32 Aligned_cols=183 Identities=20% Similarity=0.161 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++||++.|+++.. ...++|+|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 2 ~i~~~~l~~~y~~~~~----~~~~~l~~vsl~i~~Ge~v~ii--------G~nGsGKSTLl~~-------L----~Gl~~ 58 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP----TELKALDNVSVEINQGEFIAII--------GQTGSGKTTFIEH-------L----NALLL 58 (305)
T ss_pred EEEEEEEEEEECCCCC----ccccceeeeEEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence 3789999999974321 0001899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------------------------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhh
Q psy11400 156 LFGGTVTKP-----------------------------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQ 198 (298)
Q Consensus 156 ~~~G~i~~~-----------------------------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~ 198 (298)
|++|+|... .++.||||||+| .++..|++||+.|+...... .
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~-~ 137 (305)
T PRK13651 59 PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGV-S 137 (305)
T ss_pred CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCC-C
Confidence 999997431 134699999987 46677999999876321100 0
Q ss_pred cCCCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH
Q psy11400 199 KGITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277 (298)
Q Consensus 199 ~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l 277 (298)
.....+++.++++.+++. ++.+++ +.+||||||||++|||||+.+|++|||||||++||+.....+.+.+
T Consensus 138 ~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l 208 (305)
T PRK13651 138 KEEAKKRAAKYIELVGLDESYLQRS---------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF 208 (305)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 011234678889999996 555553 6799999999999999999999999999999999999999988877
Q ss_pred Hh---cCcEEEEEecCcchhh
Q psy11400 278 RE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 278 ~~---~~~TiIiitH~l~~~~ 295 (298)
++ .|+|||+|||+++.+.
T Consensus 209 ~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 209 DNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred HHHHHCCCEEEEEeeCHHHHH
Confidence 54 4899999999998653
No 104
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-34 Score=257.18 Aligned_cols=183 Identities=23% Similarity=0.326 Sum_probs=149.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++...+ +++|+||++++|++++|+ ||| || |+++ + +|+.+|
T Consensus 1 i~~~~l~~~~~~~~~~-------~l~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p 54 (234)
T cd03251 1 VEFKNVTFRYPGDGPP-------VLRDISLDIPAGETVALV--------GPSGSGKSTLVNL-------I----PRFYDV 54 (234)
T ss_pred CEEEEEEEEeCCCCcc-------ceeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccccC
Confidence 4689999999643222 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG 224 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 224 (298)
++|+|... .++.++|+||++.++..|++||+.++.. .....++.+.++..++.++++. +.+
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (234)
T cd03251 55 DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP-------GATREEVEEAARAANAHEFIMELPEG 127 (234)
T ss_pred CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCC-------CCCHHHHHHHHHHcCcHHHHHhcccC
Confidence 99998531 1456999999999888899999987642 1223445566666677666554 335
Q ss_pred cccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
+++..+ ++.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+..
T Consensus 128 l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 555433 6789999999999999999999999999999999999999999988875 38899999999987653
No 105
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4e-35 Score=259.40 Aligned_cols=179 Identities=20% Similarity=0.186 Sum_probs=145.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|+++..+ +++|+||++++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~~~~~-------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 54 (220)
T cd03263 1 LQIRNLTKTYKKGTKP-------AVDDLSLNVYKGEIFGLL--------GHNGAGKTTTLKM-------L----TGELRP 54 (220)
T ss_pred CEEEeeEEEeCCCCce-------eecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 4689999999643122 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|+|... .+++++|+||++.++ ..|+++|+.++...... ......+++.++++.+++.+..+++
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~--- 130 (220)
T cd03263 55 TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL-PKSEIKEEVELLLRVLGLTDKANKR--- 130 (220)
T ss_pred CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhCh---
Confidence 99998531 245699999999877 57999999864211000 0001134577889999987655543
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 131 ------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 131 ------ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 578999999999999999999999999999999999999999988875 3689999999998764
No 106
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.7e-35 Score=259.43 Aligned_cols=182 Identities=23% Similarity=0.219 Sum_probs=146.8
Q ss_pred CcEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 79 NLRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
.+++++|+++.|+++. .+ +++|+||+|++|++++|+ |+| || |+++ + +|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~-------~l~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G 58 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELS-------ILTGVELVVKRGETIALI--------GESGSGKSTLLAI-------L----AG 58 (228)
T ss_pred ceEEEeeeEEEccCCCcceE-------EEeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hc
Confidence 3689999999996432 12 899999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 153 LWPLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 153 l~~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+++|++|+|.... ++.++|+||++.++. .|+.||+.++...... ......+++.++++.+++.
T Consensus 59 l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~ 137 (228)
T PRK10584 59 LDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE-SSRQSRNGAKALLEQLGLG 137 (228)
T ss_pred CCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCH
Confidence 9999999975210 246999999998776 5999999764211000 0011235678889999997
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS 292 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~ 292 (298)
+..++. +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|||++||+++
T Consensus 138 ~~~~~~---------~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 138 KRLDHL---------PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred hHhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 665543 678999999999999999999999999999999999999999888754 3789999999998
Q ss_pred hhhh
Q psy11400 293 LWTH 296 (298)
Q Consensus 293 ~~~~ 296 (298)
.+..
T Consensus 209 ~~~~ 212 (228)
T PRK10584 209 LAAR 212 (228)
T ss_pred HHHh
Confidence 7643
No 107
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-35 Score=267.81 Aligned_cols=181 Identities=24% Similarity=0.249 Sum_probs=147.2
Q ss_pred cEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 80 LRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+++++||+++|+... .. +|+|+||+|++||+++|+ |+| || |+++ + +|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 57 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKY-------TLNDVSFHVKQGEWLSII--------GHNGSGKSTTVRL-------I----DGLL 57 (279)
T ss_pred eEEEEeEEEEcCCCCcCe-------eeeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 589999999996422 22 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|++|+|... .+++++|+||+|. ++..|++||+.++..... .......+++.++++.+++.++.++
T Consensus 58 ~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~ 136 (279)
T PRK13650 58 EAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG-IPHEEMKERVNEALELVGMQDFKER 136 (279)
T ss_pred CCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCCHhHhhC
Confidence 9999997531 1357999999983 456799999987632110 0001113467888999999877665
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+ +.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+..
T Consensus 137 ~---------~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~ 206 (279)
T PRK13650 137 E---------PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL 206 (279)
T ss_pred C---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 3 679999999999999999999999999999999999999998887654 38999999999987643
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-35 Score=264.10 Aligned_cols=178 Identities=22% Similarity=0.203 Sum_probs=145.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 1 ml~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 52 (255)
T PRK11248 1 MLQISHLYADYGG-KP--------ALEDINLTLESGELLVVL--------GPSGCGKTTLLNL-------I----AGFVP 52 (255)
T ss_pred CEEEEEEEEEeCC-ee--------eEeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400 156 LFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228 (298)
Q Consensus 156 ~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~ 228 (298)
|++|+|... .+..++|+||++.++. .|+.+|+.++...... ......+++.++++.+++.+..+++
T Consensus 53 p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~------ 125 (255)
T PRK11248 53 YQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV-EKMQRLEIAHQMLKKVGLEGAEKRY------ 125 (255)
T ss_pred CCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCChhHhhCC------
Confidence 999998642 2346999999998775 6999999875311000 0011134578889999997665543
Q ss_pred cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+.
T Consensus 126 ---~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~ 193 (255)
T PRK11248 126 ---IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV 193 (255)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999887764 3799999999998764
No 109
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-35 Score=268.89 Aligned_cols=183 Identities=23% Similarity=0.209 Sum_probs=145.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++||+|.|+.+... . ..+|+|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 mi~~~~v~~~y~~~~~~--~--~~~l~~vsl~i~~Ge~v~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 57 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPF--A--SRALFDIDLEVKKGSYTALI--------GHTGSGKSTLLQH-------L----NGLLQ 57 (288)
T ss_pred CEEEEEEEEEeCCCCcc--c--ccceeeeEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCC
Confidence 47899999999643210 0 01899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-h
Q psy11400 156 LFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-Y 217 (298)
Q Consensus 156 ~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~ 217 (298)
|++|+|... .++.++||||+| .++..|+.||+.|+...... .......++.++++.+++. .
T Consensus 58 p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~ 136 (288)
T PRK13643 58 PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI-PKEKAEKIAAEKLEMVGLADE 136 (288)
T ss_pred CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCChh
Confidence 999997431 135699999998 67778999999875321000 0011134577888999985 3
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
+.+++ +..||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|+|||++||+++.+
T Consensus 137 ~~~~~---------~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~ 207 (288)
T PRK13643 137 FWEKS---------PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDV 207 (288)
T ss_pred hccCC---------cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 54443 679999999999999999999999999999999999999998887754 489999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 208 ~ 208 (288)
T PRK13643 208 A 208 (288)
T ss_pred H
Confidence 4
No 110
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.2e-35 Score=270.65 Aligned_cols=180 Identities=25% Similarity=0.303 Sum_probs=149.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||++.|..+.. +|+|+||+|++|++++++ ||| || |+++ + .|+..
T Consensus 4 ~i~~~~l~k~~~~~~~--------~l~~vs~~i~~Gei~gll--------G~NGAGKTTllk~-------l----~gl~~ 56 (293)
T COG1131 4 VIEVRNLTKKYGGDKT--------ALDGVSFEVEPGEIFGLL--------GPNGAGKTTLLKI-------L----AGLLK 56 (293)
T ss_pred eeeecceEEEeCCCCE--------EEeceeEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence 4788999999963334 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+|... .+++|||+||+|.++. .|++||+.|....... ......+++.++++.++|.+..++
T Consensus 57 p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~--- 132 (293)
T COG1131 57 PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDKANK--- 132 (293)
T ss_pred CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchhhCc---
Confidence 999998532 2467999999998764 6999999875422110 001235678999999999864333
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC-cEEEEEecCcchhhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG-ITLFTVSHRKSLWTH 296 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~-~TiIiitH~l~~~~~ 296 (298)
...+||+|||||++||+||+++|+++||||||+|||+.....+++++++ .+ +||+++||.++.+..
T Consensus 133 ------~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 133 ------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred ------chhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 3679999999999999999999999999999999999999999988775 34 899999999987654
No 111
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-35 Score=271.92 Aligned_cols=184 Identities=20% Similarity=0.172 Sum_probs=146.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|+++|++|.|+.... ...++|+|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 20 ~~l~~~nl~~~y~~~~~----~~~~~L~~vsl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------L----~Gl~ 76 (320)
T PRK13631 20 IILRVKNLYCVFDEKQE----NELVALNNISYTFEKNKIYFII--------GNSGSGKSTLVTH-------F----NGLI 76 (320)
T ss_pred ceEEEEeEEEEeCCCCc----ccccceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 46999999999964210 0001999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc---------------------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHH
Q psy11400 155 PLFGGTVTKP---------------------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDAD 205 (298)
Q Consensus 155 ~~~~G~i~~~---------------------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~ 205 (298)
+|++|+|... .+++|+||||+| .++..|++||+.++...... ........
T Consensus 77 ~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~ 155 (320)
T PRK13631 77 KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGV-KKSEAKKL 155 (320)
T ss_pred CCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCC-CHHHHHHH
Confidence 9999987531 135699999998 57788999999876311000 00011235
Q ss_pred HHHHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC
Q psy11400 206 LTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG 281 (298)
Q Consensus 206 i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~ 281 (298)
+.++++.+++. .+.++ .+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+
T Consensus 156 ~~~~l~~~gL~~~~~~~---------~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g 226 (320)
T PRK13631 156 AKFYLNKMGLDDSYLER---------SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN 226 (320)
T ss_pred HHHHHHHcCCChhHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC
Confidence 67788888885 45444 3679999999999999999999999999999999999999999888764 48
Q ss_pred cEEEEEecCcchhh
Q psy11400 282 ITLFTVSHRKSLWT 295 (298)
Q Consensus 282 ~TiIiitH~l~~~~ 295 (298)
+|||+|||+++.+.
T Consensus 227 ~TiiivtHd~~~~~ 240 (320)
T PRK13631 227 KTVFVITHTMEHVL 240 (320)
T ss_pred CEEEEEecCHHHHH
Confidence 99999999998653
No 112
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8e-35 Score=275.15 Aligned_cols=179 Identities=24% Similarity=0.237 Sum_probs=148.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +++|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 2 ~L~i~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------I----aGl~~ 53 (353)
T PRK10851 2 SIEIANIKKSFGR-TQ--------VLNDISLDIPSGQMVALL--------GPSGSGKTTLLRI-------I----AGLEH 53 (353)
T ss_pred EEEEEEEEEEeCC-eE--------EEEEeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh---hhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED---MIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .+++|+||||++.+|+ .|++||+.|+..... ........+++.++++.+++.++.+++
T Consensus 54 p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 133 (353)
T PRK10851 54 QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY 133 (353)
T ss_pred CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence 999998531 2457999999998875 699999998753110 000011235678899999998776653
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+.
T Consensus 134 ---------~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~ 201 (353)
T PRK10851 134 ---------PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM 201 (353)
T ss_pred ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 689999999999999999999999999999999999999888877654 3899999999998754
No 113
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.6e-35 Score=266.67 Aligned_cols=180 Identities=21% Similarity=0.187 Sum_probs=145.0
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 6 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 57 (269)
T PRK11831 6 NLVDMRGVSFTRGN-RC--------IFDNISLTVPRGKITAIM--------GPSGIGKTTLLRL-------I----GGQI 57 (269)
T ss_pred ceEEEeCeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 36899999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 155 PLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 155 ~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
+|++|+|... .++.++|+||++.++. .|+.||+.++.............+.+.++++.+++.+..
T Consensus 58 ~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 137 (269)
T PRK11831 58 APDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA 137 (269)
T ss_pred CCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh
Confidence 9999987521 1346999999998876 499999976421100000001124566788899987655
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++. +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+.
T Consensus 138 ~~~---------~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 138 KLM---------PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred hCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 543 679999999999999999999999999999999999999988887765 2789999999987654
No 114
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-35 Score=258.97 Aligned_cols=177 Identities=21% Similarity=0.189 Sum_probs=144.5
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 i~~~~~~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~ 52 (220)
T cd03265 1 IEVENLVKKYGD-FE--------AVRGVSFRVRRGEIFGLL--------GPNGAGKTTTIKM-------L----TTLLKP 52 (220)
T ss_pred CEEEEEEEEECC-EE--------eeeceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999953 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|+|... .+++++|+||++.++. .|+++|+.++...... ......+++.++++.+++.+..+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~--- 128 (220)
T cd03265 53 TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRL--- 128 (220)
T ss_pred CceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCC---
Confidence 99998532 1356999999998765 5999999764211000 0011234678889999997666553
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 129 ------~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 129 ------VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999998887764 3789999999998764
No 115
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.6e-34 Score=257.03 Aligned_cols=178 Identities=26% Similarity=0.329 Sum_probs=146.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++||++.|++ .. +++|+||+|++||+++|+ ||| || |+++ + +|+.
T Consensus 6 ~~i~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~ 57 (225)
T PRK10247 6 PLLQLQNVGYLAGD-AK--------ILNNISFSLRAGEFKLIT--------GPSGCGKSTLLKI-------V----ASLI 57 (225)
T ss_pred ceEEEeccEEeeCC-ce--------eeeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence 46899999999953 34 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhc
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNRE 222 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~ 222 (298)
+|++|+|... .++.++|+||++.++..|++||+.++.... ......+++.++++.+++. ...+++
T Consensus 58 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (225)
T PRK10247 58 SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR---NQQPDPAIFLDDLERFALPDTILTKN 134 (225)
T ss_pred CCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhc---CCChHHHHHHHHHHHcCCChHHhcCC
Confidence 9999998532 135799999999888889999998642110 0111234567889999885 344443
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .+.|+|++||+++.+..
T Consensus 135 ---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~ 203 (225)
T PRK10247 135 ---------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203 (225)
T ss_pred ---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence 679999999999999999999999999999999999999988887664 37899999999987654
No 116
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=258.77 Aligned_cols=174 Identities=26% Similarity=0.289 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 54 (241)
T PRK14250 3 EIEFKEVSYSSFG-KE--------ILKDISVKFEGGAIYTIV--------GPSGAGKSTLIKL-------I----NRLID 54 (241)
T ss_pred eEEEEeEEEEeCC-ee--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4889999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~ 223 (298)
|++|+|... .++.++|+||++.++..|++||+.++... ......++.++++.+++. ++.++
T Consensus 55 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~-- 127 (241)
T PRK14250 55 PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML-----KGEKNVDVEYYLSIVGLNKEYATR-- 127 (241)
T ss_pred CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhh-----cCcHHHHHHHHHHHcCCCHHHhhC--
Confidence 999998532 14579999999988888999999875321 112235677889999986 44444
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+.
T Consensus 128 -------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 128 -------DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAK 196 (241)
T ss_pred -------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 3679999999999999999999999999999999999999998887764 3899999999998754
No 117
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.2e-35 Score=271.15 Aligned_cols=179 Identities=21% Similarity=0.193 Sum_probs=147.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++||++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + .|++
T Consensus 6 ~~i~i~~l~k~~~~-~~--------~l~~vsl~i~~Gei~gll--------GpNGaGKSTLl~~-------l----~Gl~ 57 (306)
T PRK13537 6 APIDFRNVEKRYGD-KL--------VVDGLSFHVQRGECFGLL--------GPNGAGKTTTLRM-------L----LGLT 57 (306)
T ss_pred ceEEEEeEEEEECC-eE--------EEecceEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 46899999999963 33 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 155 PLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
+|++|+|... .+++|||+||++.++. .|++||+.+....... .......++.++++.+++.+..+++
T Consensus 58 ~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~- 135 (306)
T PRK13537 58 HPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-SAAAARALVPPLLEFAKLENKADAK- 135 (306)
T ss_pred CCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhcCc-
Confidence 9999998531 2467999999998775 6999999863211100 0001124567888899987665553
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+++|++|||||||+|||+.+...+++++++ .|+|||++||+++.+.
T Consensus 136 --------~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~ 202 (306)
T PRK13537 136 --------VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAE 202 (306)
T ss_pred --------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 678999999999999999999999999999999999999999888765 3899999999998764
No 118
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-35 Score=268.91 Aligned_cols=182 Identities=23% Similarity=0.194 Sum_probs=144.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|++++|+.... ...++|+|+||+|++||+++|+ |+| || |+++ + .|+.+|
T Consensus 3 l~~~~l~~~y~~~~~----~~~~~L~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p 59 (290)
T PRK13634 3 ITFQKVEHRYQYKTP----FERRALYDVNVSIPSGSYVAII--------GHTGSGKSTLLQH-------L----NGLLQP 59 (290)
T ss_pred EEEEEEEEEECCCCc----ccccceeeEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCC
Confidence 789999999964210 0002999999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hh
Q psy11400 157 FGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YI 218 (298)
Q Consensus 157 ~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~ 218 (298)
++|+|... .++.|+||||+| .++..|++||+.++...... ......+.+.++++.++|. .+
T Consensus 60 ~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~ 138 (290)
T PRK13634 60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGV-SEEDAKQKAREMIELVGLPEEL 138 (290)
T ss_pred CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCChhh
Confidence 99997431 134699999998 56778999999875311000 0001124577889999996 44
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.+++ +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+|||+++.+
T Consensus 139 ~~~~---------~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~ 209 (290)
T PRK13634 139 LARS---------PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA 209 (290)
T ss_pred hhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4443 679999999999999999999999999999999999999998887754 389999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 210 ~ 210 (290)
T PRK13634 210 A 210 (290)
T ss_pred H
Confidence 4
No 119
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.7e-35 Score=277.44 Aligned_cols=179 Identities=21% Similarity=0.210 Sum_probs=148.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.++++||++.|+. .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.
T Consensus 4 ~~l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl~ 55 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NT--------VLDDLSLEIEAGELLALI--------GKSGCGKTTLLRA-------I----AGFV 55 (362)
T ss_pred eEEEEEEEEEEECC-eE--------EEeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 35899999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCC--ceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 155 PLFG--GTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 155 ~~~~--G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
+|++ |+|... .++.|+||||++.+|. .|++||+.|+...... .......++.++++.++|.++.++.
T Consensus 56 ~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~~~ 134 (362)
T TIGR03258 56 KAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM-PKADIAERVADALKLVGLGDAAAHL 134 (362)
T ss_pred CCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCchhhCC
Confidence 9999 998531 2457999999998875 5999999986421100 0011234678899999998877664
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----c-CcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----V-GITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~-~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|+||||||+||+.....+.+.+++ . |+|+|+|||+++.+.
T Consensus 135 ---------~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 135 ---------PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203 (362)
T ss_pred ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988877653 3 789999999998754
No 120
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-35 Score=257.15 Aligned_cols=176 Identities=22% Similarity=0.208 Sum_probs=144.3
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||++++| +++|+ ||| || |+++ + +|+++|
T Consensus 1 i~~~~~~~~~~~-~~--------~l~~vs~~i~~g-~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 51 (211)
T cd03264 1 LQLENLTKRYGK-KR--------ALDGVSLTLGPG-MYGLL--------GPNGAGKTTLMRI-------L----ATLTPP 51 (211)
T ss_pred CEEEEEEEEECC-EE--------EEcceeEEEcCC-cEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999953 33 899999999999 99999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|+|... .++.++|+||++.++. .|+.||+.+....... ......+++.++++.+++.+..+++
T Consensus 52 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~--- 127 (211)
T cd03264 52 SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKK--- 127 (211)
T ss_pred CccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCc---
Confidence 99998632 1457999999998876 4999999764211000 0011134577889999997665543
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++. +.|+|++||+++.+.
T Consensus 128 ------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~ 193 (211)
T cd03264 128 ------IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE 193 (211)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 6789999999999999999999999999999999999999999988753 689999999998764
No 121
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.9e-34 Score=258.73 Aligned_cols=186 Identities=20% Similarity=0.203 Sum_probs=155.2
Q ss_pred cCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 77 RNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 77 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
..+.++++|+++.|+..... +++|+||+|++|++++|+ |+| || |+++ + +|
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~-------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G 69 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKP-------VLKHVKAYIKPGQKVGIC--------GRTGSGKSSLSLA-------F----FR 69 (257)
T ss_pred CCceEEEEEEEEEeCCCCCc-------ceeEEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hc
Confidence 45679999999999753222 899999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+++|++|+|... .++.++|+||++.++.+|+++|+.... ......+.++++.+++.+.++.
T Consensus 70 l~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~--------~~~~~~~~~~l~~~~l~~~~~~ 141 (257)
T cd03288 70 MVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC--------KCTDDRLWEALEIAQLKNMVKS 141 (257)
T ss_pred ccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC--------CCCHHHHHHHHHHhCcHHHHhh
Confidence 999999997531 245799999999988889999986431 1124456677777888777665
Q ss_pred -cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 222 -EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 -~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
+.|+++..+ ++.+||+|||||++|||||+++|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..
T Consensus 142 ~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 142 LPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD 220 (257)
T ss_pred cccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh
Confidence 446777654 7789999999999999999999999999999999999999999888775 48999999999987653
No 122
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.5e-35 Score=270.65 Aligned_cols=178 Identities=22% Similarity=0.232 Sum_probs=145.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 4 ~i~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~l~--------G~NGaGKSTLl~~-------l----~Gl~~ 55 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KV--------VVNDLSFTIARGECFGLL--------GPNGAGKSTIARM-------L----LGMIS 55 (303)
T ss_pred EEEEEeEEEEeCC-eE--------EEcceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+|... .+++++|+||++.++. .|++||+.+....... ......+.+.++++.+++.+..+++
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~~~~~~-- 132 (303)
T TIGR01288 56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM-STREIEAVIPSLLEFARLESKADVR-- 132 (303)
T ss_pred CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCChhHhcCc--
Confidence 999998532 2467999999998764 6999999753211000 0000123466788888887665543
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++ .|+|||++||+++.+.
T Consensus 133 -------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~ 199 (303)
T TIGR01288 133 -------VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE 199 (303)
T ss_pred -------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 679999999999999999999999999999999999999999888765 3899999999998764
No 123
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.2e-34 Score=252.79 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=146.1
Q ss_pred EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
.+.|+.|.|+.+.. +++|+||+|++|++++|+ |+| || |+++ + +|+++|+
T Consensus 2 ~~~~~~~~~~~~~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~~ 54 (218)
T cd03290 2 QVTNGYFSWGSGLA--------TLSNINIRIPTGQLTMIV--------GQVGCGKSSLLLA-------I----LGEMQTL 54 (218)
T ss_pred eeeeeEEecCCCCc--------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCCC
Confidence 46788999975444 999999999999999999 999 99 9999 8 9999999
Q ss_pred Cceeecc---------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400 158 GGTVTKP---------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR- 221 (298)
Q Consensus 158 ~G~i~~~---------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~- 221 (298)
+|+|... .++.++|++|++.++..|++||+.++.. ...++..++++.+++.+.++.
T Consensus 55 ~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~--------~~~~~~~~~~~~~~l~~~~~~~ 126 (218)
T cd03290 55 EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP--------FNKQRYKAVTDACSLQPDIDLL 126 (218)
T ss_pred CCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCc--------CCHHHHHHHHHHhCcHHHHHhC
Confidence 9987531 1356999999998888899999987531 123445667788888765543
Q ss_pred cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH--H---HHhcCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE--Y---CREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~--~---l~~~~~TiIiitH~l~~~~ 295 (298)
+.++++..+ ++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+ + +++.+.|+|++||+++.+.
T Consensus 127 ~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred cCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 445555433 678999999999999999999999999999999999998887766 3 3345799999999998765
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 207 ~ 207 (218)
T cd03290 207 H 207 (218)
T ss_pred h
Confidence 4
No 124
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.9e-35 Score=261.57 Aligned_cols=179 Identities=24% Similarity=0.218 Sum_probs=144.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 52 (247)
T TIGR00972 1 AIEIENLNLFYGE-KE--------ALKNINLDIPKNQVTALI--------GPSGCGKSTLLRS-------L----NRMND 52 (247)
T ss_pred CEEEEEEEEEECC-ee--------eecceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cC-----Cceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-
Q psy11400 156 LF-----GGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG- 216 (298)
Q Consensus 156 ~~-----~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~- 216 (298)
|+ +|+|... .++.++|+||++.++..|++||+.++.............+.+.++++.+++.
T Consensus 53 p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 132 (247)
T TIGR00972 53 LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWD 132 (247)
T ss_pred CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 88 9987531 1356999999998877999999987431110000011134577889999987
Q ss_pred ---hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCc
Q psy11400 217 ---YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRK 291 (298)
Q Consensus 217 ---~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l 291 (298)
+..++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++. ++|+|++||++
T Consensus 133 ~~~~~~~~---------~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 133 EVKDRLHD---------SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred chhhHhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 33333 36799999999999999999999999999999999999999999887652 58999999999
Q ss_pred chhh
Q psy11400 292 SLWT 295 (298)
Q Consensus 292 ~~~~ 295 (298)
+.+.
T Consensus 204 ~~~~ 207 (247)
T TIGR00972 204 QQAA 207 (247)
T ss_pred HHHH
Confidence 8664
No 125
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-34 Score=256.53 Aligned_cols=175 Identities=21% Similarity=0.286 Sum_probs=140.7
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|++ .. +++|+||++++|++++|+ ||| || |+++ + +|+.+|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 52 (222)
T cd03224 1 LEVENLNAGYGK-SQ--------ILFGVSLTVPEGEIVALL--------GRNGAGKTTLLKT-------I----MGLLPP 52 (222)
T ss_pred CEEeeEEeecCC-ee--------EeeeeeEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc-CCchhhhhc
Q psy11400 157 FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV-QLGYILNRE 222 (298)
Q Consensus 157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~~ 222 (298)
++|+|... .++.++|+||++.++. .|++||+.++..... .....+.+.++++.+ ++.+..++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~- 128 (222)
T cd03224 53 RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQ- 128 (222)
T ss_pred CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhC-
Confidence 99997531 1346999999998776 499999987532110 011233455666666 35444333
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.++..+.+++++ .++|+|++||+++.+.
T Consensus 129 --------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 129 --------LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred --------chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3678999999999999999999999999999999999999999988765 3789999999998754
No 126
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3e-34 Score=256.85 Aligned_cols=182 Identities=24% Similarity=0.333 Sum_probs=148.7
Q ss_pred EEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 81 RGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 81 i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++++|+++.|+... .+ +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 1 l~i~~l~~~~~~~~~~~-------~l~~i~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~ 54 (238)
T cd03249 1 IEFKNVSFRYPSRPDVP-------ILKGLSLTIPPGKTVALV--------GSSGCGKSTVVSL-------L----ERFYD 54 (238)
T ss_pred CeEEEEEEecCCCCCcc-------ceeceEEEecCCCEEEEE--------eCCCCCHHHHHHH-------H----hccCC
Confidence 46899999996432 22 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC-----------CCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400 156 LFGGTVTKPP-----------RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK 223 (298)
Q Consensus 156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~ 223 (298)
|++|+|.... ++.++|+||++.++..|++||+.++.. ....+++.+.++..++.++.+. +.
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (238)
T cd03249 55 PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-------DATDEEVEEAAKKANIHDFIMSLPD 127 (238)
T ss_pred CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCC-------CCCHHHHHHHHHHcChHHHHHhhcc
Confidence 9999985321 356999999998887899999987542 1123445566677777666544 44
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
++++..+ ++.+||||||||++|||||+.+|+++||||||++||+...+.+.+.+++ .++|+|++||+++.+.
T Consensus 128 ~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 128 GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred ccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 5555433 6789999999999999999999999999999999999999999988765 4789999999998765
No 127
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=266.45 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=146.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++++|+.+.. +++|+||+|++||+++|+ |+| || |+++ + +|+.+
T Consensus 5 ~l~~~~l~~~~~~~~~--------~l~~vs~~i~~Ge~~~i~--------G~nGaGKSTLl~~-------i----~Gl~~ 57 (283)
T PRK13636 5 ILKVEELNYNYSDGTH--------ALKGININIKKGEVTAIL--------GGNGAGKSTLFQN-------L----NGILK 57 (283)
T ss_pred eEEEEeEEEEeCCCCe--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 6899999999964344 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.++|+||++ .++..|++||+.++...... ......+.+.++++.+++.++.+
T Consensus 58 p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~ 136 (283)
T PRK13636 58 PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL-PEDEVRKRVDNALKRTGIEHLKD 136 (283)
T ss_pred CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHCCChhhhh
Confidence 999997531 135699999998 45678999999875311000 00011245788889999977665
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++ +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|+|||++||+++.+.
T Consensus 137 ~~---------~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~ 206 (283)
T PRK13636 137 KP---------THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP 206 (283)
T ss_pred CC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 53 679999999999999999999999999999999999999988887754 3899999999998765
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.5e-34 Score=256.76 Aligned_cols=181 Identities=27% Similarity=0.355 Sum_probs=140.5
Q ss_pred cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+++++||++.|+... .+ +++|+||++++|++++|+ ||| || |+++ + +|+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~-------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~ 54 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVK-------ALDDVSFSIKKGETLGLV--------GESGSGKSTLARA-------I----LGL 54 (228)
T ss_pred CeEEEeeeEeccCCCccee-------eecCceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 378999999996431 12 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc--------------CCCcEEEEcCcC--CCC-CCCHHHHHccCCcchhhhhcCCCHHH-HHHHHHHcCC
Q psy11400 154 WPLFGGTVTKP--------------PRGKLFYVPQRP--YMT-LGTLRDQVIYPHTKEDMIQKGITDAD-LTEYLQKVQL 215 (298)
Q Consensus 154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~-i~~~l~~~~l 215 (298)
++|++|+|... .++.++|+||++ .++ ..|+++|+.++............... ..++++.+++
T Consensus 55 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 134 (228)
T cd03257 55 LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGL 134 (228)
T ss_pred CCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCC
Confidence 99999987521 135799999998 344 47999999764211000000001112 2467788888
Q ss_pred c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecC
Q psy11400 216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHR 290 (298)
Q Consensus 216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~ 290 (298)
. ...++ .+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ . ++|||++||+
T Consensus 135 ~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 135 PEEVLNR---------YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred ChhHhhC---------CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4 44444 2678999999999999999999999999999999999999999888764 2 7999999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
++.+.
T Consensus 206 ~~~~~ 210 (228)
T cd03257 206 LGVVA 210 (228)
T ss_pred HHHHH
Confidence 98765
No 129
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=267.25 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=144.9
Q ss_pred cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
.++++||++.|+.+. .+ +|+|+||+|++||+++|+ |+| || |+++ | .|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~-------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------L----~G 55 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQ-------AIHDVNTEFEQGKYYAIV--------GQTGSGKSTLIQN-------I----NA 55 (286)
T ss_pred EEEEEEEEEEECCCCccccC-------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence 378999999996432 12 999999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 153 LWPLFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 153 l~~~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
+++|++|+|... .+++|+||||+| .++..|+.||+.++...... ......+.+.++++.+++
T Consensus 56 l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~~gL 134 (286)
T PRK13646 56 LLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKM-NLDEVKNYAHRLLMDLGF 134 (286)
T ss_pred CCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHcCC
Confidence 999999987421 145799999997 46777999999875311000 001123456788888888
Q ss_pred c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400 216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR 290 (298)
Q Consensus 216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~ 290 (298)
. +..++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .|+|||+|||+
T Consensus 135 ~~~~~~~---------~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 135 SRDVMSQ---------SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred ChhhhhC---------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 6 44444 3679999999999999999999999999999999999999999888764 38999999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
++.+.
T Consensus 206 ~~~~~ 210 (286)
T PRK13646 206 MNEVA 210 (286)
T ss_pred HHHHH
Confidence 98764
No 130
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3e-34 Score=251.04 Aligned_cols=170 Identities=24% Similarity=0.269 Sum_probs=143.5
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 l~i~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (201)
T cd03231 1 LEADELTCERDG-RA--------LFSGLSFTLAAGEALQVT--------GPNGSGKTTLLRI-------L----AGLSPP 52 (201)
T ss_pred CEEEEEEEEeCC-ce--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|+|... .+++++|+||++.++ ..|++||+.+... ....+++.++++.+++.++.+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~--- 122 (201)
T cd03231 53 LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-------DHSDEQVEEALARVGLNGFEDRP--- 122 (201)
T ss_pred CCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcc-------cccHHHHHHHHHHcCChhhhcCc---
Confidence 99998531 235799999999775 5799999987531 12456788899999997655443
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
+.+||||||||++|||||+.+|+++||||||++||+...+.+.+.+++ .+.|+|++||+....
T Consensus 123 ------~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~ 188 (201)
T cd03231 123 ------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL 188 (201)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh
Confidence 678999999999999999999999999999999999999999988764 389999999987643
No 131
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-35 Score=255.42 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=144.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||++++|++++|+ |+| || |+++ + +|+.+|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~v~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (210)
T cd03269 1 LEVENVTKRFGR-VT--------ALDDISFSVEKGEIFGLL--------GPNGAGKTTTIRM-------I----LGIILP 52 (210)
T ss_pred CEEEEEEEEECC-EE--------EEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999953 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400 157 FGGTVTKP-------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228 (298)
Q Consensus 157 ~~G~i~~~-------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~ 228 (298)
++|+|... .++.++|+||++.++. .|++||+.+....... ......+++.++++.+++.+..+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~------ 125 (210)
T cd03269 53 DSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKR------ 125 (210)
T ss_pred CceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCc------
Confidence 99998643 2457999999998776 5999999764211000 0011234677889999987655543
Q ss_pred cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 126 ---~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 126 ---VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred ---HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 578999999999999999999999999999999999999999888765 3789999999998764
No 132
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-34 Score=276.08 Aligned_cols=179 Identities=22% Similarity=0.235 Sum_probs=148.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|++ .. +++|+||++++||+++|+ ||| || |+++ | +|+.
T Consensus 13 ~~L~l~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~Ll--------GpsGsGKSTLLr~-------I----aGl~ 64 (375)
T PRK09452 13 PLVELRGISKSFDG-KE--------VISNLDLTINNGEFLTLL--------GPSGCGKTTVLRL-------I----AGFE 64 (375)
T ss_pred ceEEEEEEEEEECC-eE--------EEeeeEEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 36899999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 155 PLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 155 ~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
+|++|+|... .++.|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.++.
T Consensus 65 ~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-- 141 (375)
T PRK09452 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRK-- 141 (375)
T ss_pred CCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCC--
Confidence 9999998531 2467999999998875 6999999987531100 0011134678889999998877663
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|+||||||+||+..+..+.+.+++ .++|+|+|||++..+.
T Consensus 142 -------p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 142 -------PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL 209 (375)
T ss_pred -------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 4899999999998754
No 133
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=264.89 Aligned_cols=180 Identities=27% Similarity=0.287 Sum_probs=147.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+....+ +++|+||+|++||+++|+ |+| || |+++ + +|+.+
T Consensus 5 ~l~~~~l~~~~~~~~~~-------~l~~vsl~i~~Ge~~~i~--------G~nGaGKSTLl~~-------i----~G~~~ 58 (279)
T PRK13635 5 IIRVEHISFRYPDAATY-------ALKDVSFSVYEGEWVAIV--------GHNGSGKSTLAKL-------L----NGLLL 58 (279)
T ss_pred eEEEEEEEEEeCCCCcc-------ceeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCC
Confidence 58999999999643322 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .++.|+|+||++ .++..|+.||+.++...... ......+++.++++.+++.++.+++
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~ 137 (279)
T PRK13635 59 PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMVERVDQALRQVGMEDFLNRE 137 (279)
T ss_pred CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCC-CHHHHHHHHHHHHHHcCChhhhhCC
Confidence 999998531 135699999998 35667999999875321100 0011134578889999998766653
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+..||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .++|||++||+++.+.
T Consensus 138 ---------~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 138 ---------PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred ---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 679999999999999999999999999999999999999999988764 2799999999998764
No 134
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=276.13 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=146.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 3 ~l~i~~l~~~~~~-~~--------vl~~vsl~i~~Ge~~~l~--------G~nGsGKSTLL~~-------i----aGl~~ 54 (369)
T PRK11000 3 SVTLRNVTKAYGD-VV--------ISKDINLDIHEGEFVVFV--------GPSGCGKSTLLRM-------I----AGLED 54 (369)
T ss_pred EEEEEEEEEEeCC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence 4889999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .++.|+||||++.+|. .|++||+.|+...... ......+++.++++.+++.++.++.
T Consensus 55 p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~--- 130 (369)
T PRK11000 55 ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRK--- 130 (369)
T ss_pred CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCC---
Confidence 999998531 2457999999998875 6999999886421100 0011134678889999998766653
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|+|||+++.+.
T Consensus 131 ------~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~ 198 (369)
T PRK11000 131 ------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 198 (369)
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 3899999999998654
No 135
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.7e-34 Score=254.30 Aligned_cols=186 Identities=26% Similarity=0.310 Sum_probs=144.1
Q ss_pred CCcEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
.++++++|+++.|++.. .+ +++|+||+|++|++++|+ ||| || |+++ + +|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~-------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G 62 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTL-------VLQDVSFTLHPGEVTALV--------GPSGSGKSTVVAL-------L----EN 62 (226)
T ss_pred CceEEEEEEEEEeCCCCCCc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence 35799999999997532 22 899999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+.+|++|+|... .++.++|+||++.++..|++||+.++... ....++.+..+..++..+++.
T Consensus 63 l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~~~l~~ 135 (226)
T cd03248 63 FYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS-------CSFECVKEAAQKAHAHSFISE 135 (226)
T ss_pred CcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCC-------CCHHHHHHHHHHcCcHHHHHh
Confidence 999999997532 13569999999988888999999875421 111122222223333333333
Q ss_pred c-CCcccc-cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 222 E-KGWDTV-ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 ~-~g~d~~-~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
. .|+++. ...+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..
T Consensus 136 l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 214 (226)
T cd03248 136 LASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER 214 (226)
T ss_pred ccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 1 133332 235789999999999999999999999999999999999999999988875 36899999999987753
No 136
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-34 Score=252.34 Aligned_cols=176 Identities=21% Similarity=0.217 Sum_probs=147.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+. .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~ 52 (204)
T PRK13538 1 MLEARNLACERDE-RI--------LFSGLSFTLNAGELVQIE--------GPNGAGKTSLLRI-------L----AGLAR 52 (204)
T ss_pred CeEEEEEEEEECC-EE--------EEecceEEECCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+|... .+++++|++|++.++. .|+.||+.++.... .....+++.++++.+++.++.+++
T Consensus 53 p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~-- 126 (204)
T PRK13538 53 PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH----GPGDDEALWEALAQVGLAGFEDVP-- 126 (204)
T ss_pred CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc----CccHHHHHHHHHHHcCCHHHhhCC--
Confidence 999997532 2457999999987764 69999998753111 112346788899999997665543
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+++|+++||||||++||+.+.+.+.+++++ .+.|+|++||+++.+..
T Consensus 127 -------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 127 -------VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred -------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 679999999999999999999999999999999999999999888765 37899999999998754
No 137
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-34 Score=261.24 Aligned_cols=179 Identities=24% Similarity=0.218 Sum_probs=144.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 54 (250)
T PRK11264 3 AIEVKNLVKKFHG-QT--------VLHGIDLEVKPGEVVAII--------GPSGSGKTTLLRC-------I----NLLEQ 54 (250)
T ss_pred cEEEeceEEEECC-ee--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 156 LFGGTVTKP-------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 156 ~~~G~i~~~-------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
|++|+|... .++.++|+||++.++. .|+.||+.++.............+.+.++++.+++
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 134 (250)
T PRK11264 55 PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL 134 (250)
T ss_pred CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 999987421 1356999999998775 69999997642100000000112456778888888
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
....++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++
T Consensus 135 ~~~~~~---------~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~ 205 (250)
T PRK11264 135 AGKETS---------YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205 (250)
T ss_pred cchhhC---------ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 765444 3679999999999999999999999999999999999999999887764 4899999999998
Q ss_pred hhh
Q psy11400 293 LWT 295 (298)
Q Consensus 293 ~~~ 295 (298)
.+.
T Consensus 206 ~~~ 208 (250)
T PRK11264 206 FAR 208 (250)
T ss_pred HHH
Confidence 764
No 138
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-34 Score=249.93 Aligned_cols=174 Identities=19% Similarity=0.220 Sum_probs=145.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++++|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ml~~~~l~~~~~~-~~--------il~~~s~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~ 52 (200)
T PRK13540 1 MLDVIELDFDYHD-QP--------LLQQISFHLPAGGLLHLK--------GSNGAGKTTLLKL-------I----AGLLN 52 (200)
T ss_pred CEEEEEEEEEeCC-ee--------EEeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|++... .+++++|+||++.++ ..|+++|+.++... ......+.++++.+++.+..+++
T Consensus 53 ~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~-- 124 (200)
T PRK13540 53 PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF------SPGAVGITELCRLFSLEHLIDYP-- 124 (200)
T ss_pred CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc------CcchHHHHHHHHHcCCchhhhCC--
Confidence 999987532 145799999999875 57999999875311 11234678889998887655543
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
..+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+.+.+..
T Consensus 125 -------~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 125 -------CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred -------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 568999999999999999999999999999999999999999888775 48999999999987654
No 139
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=264.21 Aligned_cols=179 Identities=20% Similarity=0.178 Sum_probs=145.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++++|+.+.. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ml~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 53 (274)
T PRK13644 1 MIRLENVSYSYPDGTP--------ALENINLVIKKGEYIGII--------GKNGSGKSTLALH-------L----NGLLR 53 (274)
T ss_pred CEEEEEEEEEcCCCCc--------eeeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 3789999999964333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|+|... .++.++|+||+|. ++..|+.||+.++..... .......+.+.++++.+++.+..++
T Consensus 54 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~ 132 (274)
T PRK13644 54 PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHR 132 (274)
T ss_pred CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcC
Confidence 999987421 1346999999985 456799999987531100 0001113457788899999776655
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+ +..||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+.
T Consensus 133 ~---------~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 133 S---------PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred C---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 3 679999999999999999999999999999999999999999888754 4899999999998764
No 140
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-34 Score=275.47 Aligned_cols=180 Identities=21% Similarity=0.238 Sum_probs=149.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +|+|+||+|++||+++|+ ||| || |+++ + .|+++
T Consensus 3 ~L~~~nls~~y~~-~~--------vL~~vs~~i~~Geiv~li--------GpNGaGKSTLLk~-------L----aGll~ 54 (402)
T PRK09536 3 MIDVSDLSVEFGD-TT--------VLDGVDLSVREGSLVGLV--------GPNGAGKTTLLRA-------I----NGTLT 54 (402)
T ss_pred eEEEeeEEEEECC-EE--------EEEeeEEEECCCCEEEEE--------CCCCchHHHHHHH-------H----hcCCC
Confidence 5899999999963 34 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchh-hhh--cCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKED-MIQ--KGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~-~~~--~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .+++|+||+|++.+ +..|++||+.++..... ... .....+.+.++++.+++.++.+
T Consensus 55 p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~ 134 (402)
T PRK09536 55 PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD 134 (402)
T ss_pred CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc
Confidence 999998531 24579999999976 56899999987642210 000 1112456889999999987776
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
++ +.+||||||||++|||||+++|++|||||||++||+..+..+++++++ .++|+|++||+++.+..
T Consensus 135 ~~---------~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~ 204 (402)
T PRK09536 135 RP---------VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAAR 204 (402)
T ss_pred CC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 64 679999999999999999999999999999999999999988887765 37899999999998743
No 141
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.3e-34 Score=258.13 Aligned_cols=177 Identities=20% Similarity=0.240 Sum_probs=142.9
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|++ .. +++|+||++++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~p 52 (232)
T cd03218 1 LRAENLSKRYGK-RK--------VVNGVSLSVKQGEIVGLL--------GPNGAGKTTTFYM-------I----VGLVKP 52 (232)
T ss_pred CeEEEEEEEeCC-EE--------eeccceeEecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 157 FGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
++|+|... .++.++|+||++.++.. |++||+.++..... .........+.++++.+++.+..++.
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~- 130 (232)
T cd03218 53 DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG-LSKKEREEKLEELLEEFHITHLRKSK- 130 (232)
T ss_pred CCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCC-
Confidence 99997531 12469999999988764 99999986431100 00001124567788888887655443
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 131 --------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 197 (232)
T cd03218 131 --------ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL 197 (232)
T ss_pred --------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999998887764 4789999999997554
No 142
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=259.50 Aligned_cols=178 Identities=21% Similarity=0.204 Sum_probs=143.7
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||+++|++... +++|+||+|++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~~~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 53 (242)
T cd03295 1 IEFENVTKRYGGGKK--------AVNNLNLEIAKGEFLVLI--------GPSGSGKTTTMKM-------I----NRLIEP 53 (242)
T ss_pred CEEEEEEEEeCCcce--------EeeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence 468999999964233 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch--hhhhc
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY--ILNRE 222 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~ 222 (298)
++|+|... .++.++|+||++.++. .|++||+.++...... ......+.+.++++.+++.. +.++
T Consensus 54 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~- 131 (242)
T cd03295 54 TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW-PKEKIRERADELLALVGLDPAEFADR- 131 (242)
T ss_pred CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCCcHHHHhc-
Confidence 99997531 1357999999998875 6999999864211000 00112345778899999874 4444
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+.
T Consensus 132 --------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~ 200 (242)
T cd03295 132 --------YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAF 200 (242)
T ss_pred --------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 3679999999999999999999999999999999999999998887765 2799999999998653
No 143
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-34 Score=258.41 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=144.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~-~~--------il~~~s~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~ 52 (240)
T PRK09493 1 MIEFKNVSKHFGP-TQ--------VLHNIDLNIDQGEVVVII--------GPSGSGKSTLLRC-------I----NKLEE 52 (240)
T ss_pred CEEEEeEEEEECC-eE--------EeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|+|... .++.++|+||++.++. .|+++|+.++.............+.+.++++.+++.+..++
T Consensus 53 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 132 (240)
T PRK09493 53 ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH 132 (240)
T ss_pred CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc
Confidence 999997521 1346999999997765 69999998742100000001123456788899988766554
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
. +..||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .++|+|++||+++.+.
T Consensus 133 ~---------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 200 (240)
T PRK09493 133 Y---------PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAE 200 (240)
T ss_pred C---------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3 679999999999999999999999999999999999999999888754 4899999999998764
No 144
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=275.48 Aligned_cols=179 Identities=21% Similarity=0.240 Sum_probs=147.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+.
T Consensus 18 ~~l~l~~v~~~~~~-~~--------~l~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------I----aGl~ 69 (377)
T PRK11607 18 PLLEIRNLTKSFDG-QH--------AVDDVSLTIYKGEIFALL--------GASGCGKSTLLRM-------L----AGFE 69 (377)
T ss_pred ceEEEEeEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 46999999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 155 PLFGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 155 ~~~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
+|++|+|.. +.++.||||||++.+|+ .|+.||+.|+...... ......+++.++++.+++.++.++.
T Consensus 70 ~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~-- 146 (377)
T PRK11607 70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRK-- 146 (377)
T ss_pred CCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC--
Confidence 999999853 12467999999998875 6999999987431100 0011234677889999998776653
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|+||||||+||+..+..+.+.+ ++.+.|+|+|||+++.+.
T Consensus 147 -------~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 214 (377)
T PRK11607 147 -------PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAM 214 (377)
T ss_pred -------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 6799999999999999999999999999999999999988776544 445899999999998653
No 145
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.2e-34 Score=260.92 Aligned_cols=181 Identities=20% Similarity=0.210 Sum_probs=146.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 4 ~~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~ 55 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HE--------VLKGVSLQANAGDVISII--------GSSGSGKSTFLRC-------I----NFLE 55 (257)
T ss_pred ccEEEeeeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 56999999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400 155 PLFGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEY 209 (298)
Q Consensus 155 ~~~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~ 209 (298)
+|++|+|... .++.++|+||++.++. .|++||+.++.............+++.++
T Consensus 56 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~ 135 (257)
T PRK10619 56 KPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY 135 (257)
T ss_pred CCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999987421 1346999999998876 59999997632100000001123457788
Q ss_pred HHHcCCchhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEE
Q psy11400 210 LQKVQLGYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLF 285 (298)
Q Consensus 210 l~~~~l~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiI 285 (298)
++.+++.+.. ++ .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .|+|+|
T Consensus 136 l~~~gl~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tii 206 (257)
T PRK10619 136 LAKVGIDERAQGK---------YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206 (257)
T ss_pred HHHcCCChhhhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 9999987653 33 3679999999999999999999999999999999999999999888664 389999
Q ss_pred EEecCcchhhh
Q psy11400 286 TVSHRKSLWTH 296 (298)
Q Consensus 286 iitH~l~~~~~ 296 (298)
+|||+++.+..
T Consensus 207 ivsH~~~~~~~ 217 (257)
T PRK10619 207 VVTHEMGFARH 217 (257)
T ss_pred EEeCCHHHHHH
Confidence 99999987653
No 146
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=257.52 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=144.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~~sl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~ 54 (241)
T PRK10895 3 TLTAKNLAKAYKG-RR--------VVEDVSLTVNSGEIVGLL--------GPNGAGKTTTFYM-------V----VGIVP 54 (241)
T ss_pred eEEEeCcEEEeCC-EE--------EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5889999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .++.++|+||++.++. .|+.||+.+................+.++++.+++.+..++
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~- 133 (241)
T PRK10895 55 RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS- 133 (241)
T ss_pred CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc-
Confidence 999997531 1356999999998776 59999998753211000011123457788888888765444
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|++||+++.+.
T Consensus 134 --------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 201 (241)
T PRK10895 134 --------MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETL 201 (241)
T ss_pred --------chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHH
Confidence 3679999999999999999999999999999999999999888777653 4899999999997553
No 147
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.1e-34 Score=257.75 Aligned_cols=178 Identities=21% Similarity=0.316 Sum_probs=143.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++++|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 52 (236)
T TIGR03864 1 ALEVAGLSFAYGA-RR--------ALDDVSFTVRPGEFVALL--------GPNGAGKSTLFSL-------L----TRLYV 52 (236)
T ss_pred CEEEEeeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+|... .++.++|+||++.+ +..|+++|+.++...... ......+.+.++++.+++.+..++
T Consensus 53 p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~--- 128 (236)
T TIGR03864 53 AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL-SRAEARERIAALLARLGLAERADD--- 128 (236)
T ss_pred CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhcC---
Confidence 999997531 12469999999977 467999999764311100 000123456788888888765544
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+.
T Consensus 129 ------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 129 ------KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred ------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 3679999999999999999999999999999999999999999887754 3789999999998764
No 148
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=262.03 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=146.3
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|+++..+ +++|+||+|++|++++|+ ||| || |+++ + +|++
T Consensus 6 ~~l~~~nl~~~~~~~~~~-------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~ 59 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN-------ALKNVSFEINEGEYVAIL--------GHNGSGKSTISKI-------L----TGLL 59 (271)
T ss_pred eEEEEEeEEEEcCCCCcc-------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 368999999999643322 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|++|+|... .++.++|+||++ .++..|++||+.++...... ......+.+.++++.+++.++.++
T Consensus 60 ~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~ 138 (271)
T PRK13632 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKV-PPKKMKDIIDDLAKKVGMEDYLDK 138 (271)
T ss_pred CCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhC
Confidence 9999997521 245799999998 35567999999875311000 000112346788899999776655
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~~~ 295 (298)
. +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++. ++|+|++||+++.+.
T Consensus 139 ~---------~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 207 (271)
T PRK13632 139 E---------PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI 207 (271)
T ss_pred C---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh
Confidence 3 6799999999999999999999999999999999999999999887652 489999999998764
No 149
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.6e-34 Score=256.89 Aligned_cols=171 Identities=27% Similarity=0.382 Sum_probs=146.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~~~~-~~--------vl~~vs~~i~~Ge~~~I~--------G~NGsGKSTLl~~-------i----~Gl~~ 55 (251)
T PRK09544 4 LVSLENVSVSFGQ-RR--------VLSDVSLELKPGKILTLL--------GPNGAGKSTLVRV-------V----LGLVA 55 (251)
T ss_pred EEEEeceEEEECC-ce--------EEEeEEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCC---CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTL---GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWI 232 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~ 232 (298)
|++|+|....+..++|+||++.++. .|+.+++.+.. ...++++.++++.+++.+..+++ +
T Consensus 56 p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~---------~ 118 (251)
T PRK09544 56 PDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRP--------GTKKEDILPALKRVQAGHLIDAP---------M 118 (251)
T ss_pred CCceEEEECCccCEEEeccccccccccChhHHHHHhccc--------cccHHHHHHHHHHcCChHHHhCC---------h
Confidence 9999998766668999999987653 37888775421 12345678899999998766553 6
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 119 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM 185 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 79999999999999999999999999999999999999998887754 2899999999998764
No 150
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=264.54 Aligned_cols=180 Identities=21% Similarity=0.220 Sum_probs=144.5
Q ss_pred cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
.++++|+++.|+.+. .+ +++|+||+|++||+++|+ ||| || |+++ | +|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~ii--------G~NGaGKSTLl~~-------l----~G 55 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKK-------GLDNISFELEEGSFVALV--------GHTGSGKSTLMQH-------F----NA 55 (287)
T ss_pred EEEEEEEEEEcCCCCCcccc-------ceeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence 478999999996321 22 899999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 153 LWPLFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 153 l~~~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
+.+|++|+|... .++.|+|+||+| .++..|+.||+.++...... ......+.+.++++.+++
T Consensus 56 l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL 134 (287)
T PRK13641 56 LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGF-SEDEAKEKALKWLKKVGL 134 (287)
T ss_pred CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC
Confidence 999999987531 124699999998 46678999999864211000 001113456788999998
Q ss_pred c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400 216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK 291 (298)
Q Consensus 216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l 291 (298)
. ++.+++ +.+||||||||++|||||+.+|++|||||||++||+.....+.+.+++ .|.|||++||++
T Consensus 135 ~~~~~~~~---------~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 135 SEDLISKS---------PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred ChhHhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6 455543 679999999999999999999999999999999999999988887764 479999999999
Q ss_pred chhh
Q psy11400 292 SLWT 295 (298)
Q Consensus 292 ~~~~ 295 (298)
+.+.
T Consensus 206 ~~~~ 209 (287)
T PRK13641 206 DDVA 209 (287)
T ss_pred HHHH
Confidence 8764
No 151
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.6e-34 Score=252.86 Aligned_cols=175 Identities=24% Similarity=0.251 Sum_probs=142.6
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
++||++.|++ .. +++|+||++++||+++|+ ||| || |+++ + +|+++|++
T Consensus 1 i~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~~~ 52 (206)
T TIGR03608 1 LKNISKKFGD-KI--------ILDDLNLTIEKGKMYAII--------GESGSGKSTLLNI-------I----GLLEKFDS 52 (206)
T ss_pred CcceEEEECC-EE--------EEeceEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCC
Confidence 4689999963 33 899999999999999999 999 99 9999 8 99999999
Q ss_pred ceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 159 GTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 159 G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|+|... .++.++|++|++.++. .|++||+.++..... .......+++.++++.+++.+..++.
T Consensus 53 G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~ 131 (206)
T TIGR03608 53 GQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQK 131 (206)
T ss_pred eEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCC
Confidence 987421 1346999999998875 699999987421100 00111235677889999987665543
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+.
T Consensus 132 ---------~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 132 ---------IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred ---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 578999999999999999999999999999999999999999988865 3799999999998654
No 152
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=259.28 Aligned_cols=184 Identities=22% Similarity=0.194 Sum_probs=143.7
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|++
T Consensus 6 ~~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 57 (254)
T PRK14273 6 AIIETENLNLFYTD-FK--------ALNNINIKILKNSITALI--------GPSGCGKSTFLRT-------L----NRMN 57 (254)
T ss_pred ceEEEeeeEEEeCC-ce--------eecceeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence 36899999999963 33 899999999999999999 999 99 9999 8 8988
Q ss_pred cc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 PL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+| ++|+|... .++.++|+||++.++..|++||+.++.............+.+.++++.+++.
T Consensus 58 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 137 (254)
T PRK14273 58 DLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW 137 (254)
T ss_pred cCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCc
Confidence 86 48887421 1456999999998888999999987531110000001234567788888874
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~ 294 (298)
+.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+
T Consensus 138 ~~l~~-----~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~ 212 (254)
T PRK14273 138 NEVKD-----KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA 212 (254)
T ss_pred hhhHH-----HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 32110 01124679999999999999999999999999999999999999999888765 368999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 213 ~ 213 (254)
T PRK14273 213 G 213 (254)
T ss_pred H
Confidence 4
No 153
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-34 Score=250.80 Aligned_cols=175 Identities=19% Similarity=0.161 Sum_probs=142.8
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ . . .|+||+|++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 i~~~~l~~~~~~-~---------~-~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~gl~~~ 50 (211)
T cd03298 1 VRLDKIRFSYGE-Q---------P-MHFDLTFAQGEITAIV--------GPSGSGKSTLLNL-------I----AGFETP 50 (211)
T ss_pred CEEEeEEEEeCC-E---------e-cceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999952 2 2 3999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++. .|++||+.++...... .....++++.++++.+++.+..+++
T Consensus 51 ~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---- 125 (211)
T cd03298 51 QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAGLEKRL---- 125 (211)
T ss_pred CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHHHHhCC----
Confidence 99997532 1356999999998876 5999999875421100 0011245678899999997666553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.++..+.+++++ .++|+|++||+++.+.
T Consensus 126 -----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 126 -----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 679999999999999999999999999999999999999999888764 3799999999998764
No 154
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-34 Score=257.27 Aligned_cols=179 Identities=26% Similarity=0.261 Sum_probs=144.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+. .. +++|+||++++||+++|+ ||| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 53 (242)
T PRK11124 2 SIQLNGINCFYGA-HQ--------ALFDITLDCPQGETLVLL--------GPSGAGKSSLLRV-------L----NLLEM 53 (242)
T ss_pred EEEEEeeEEEECC-ee--------eEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 LFGGTVTKP-----------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~~~G~i~~~-----------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
|++|+|... .+++++|+||++.++. .|+.||+.+..............+++.++++.+++..
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 133 (242)
T PRK11124 54 PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP 133 (242)
T ss_pred CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 999997531 1346999999998875 5999999742110000000011345677888888876
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
+.++. +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+
T Consensus 134 ~~~~~---------~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 134 YADRF---------PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred hhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 66553 679999999999999999999999999999999999999999888764 489999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 205 ~ 205 (242)
T PRK11124 205 R 205 (242)
T ss_pred H
Confidence 4
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-34 Score=262.90 Aligned_cols=183 Identities=21% Similarity=0.231 Sum_probs=143.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||++.|+.... ...++++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~~~~----~~~~~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~ 58 (280)
T PRK13649 2 GINLQNVSYTYQAGTP----FEGRALFDVNLTIEDGSYTAFI--------GHTGSGKSTIMQL-------L----NGLHV 58 (280)
T ss_pred eEEEEEEEEEcCCCCc----cccceeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999964320 0001899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-
Q psy11400 156 LFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY- 217 (298)
Q Consensus 156 ~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~- 217 (298)
|++|+|... .++.|+|+||++ .++..|++||+.++...... ......+.+.++++.+++..
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~ 137 (280)
T PRK13649 59 PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGV-SQEEAEALAREKLALVGISES 137 (280)
T ss_pred CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCChh
Confidence 999997521 134699999997 56778999999864211000 00001234667788888863
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
..++ .+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .++|||++||+++.+
T Consensus 138 ~~~~---------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 138 LFEK---------NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV 208 (280)
T ss_pred hhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 4443 3679999999999999999999999999999999999999999888765 379999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 209 ~ 209 (280)
T PRK13649 209 A 209 (280)
T ss_pred H
Confidence 4
No 156
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.2e-34 Score=261.11 Aligned_cols=181 Identities=23% Similarity=0.233 Sum_probs=143.3
Q ss_pred cEEEeeeeEecCCC-------CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccc
Q psy11400 80 LRGRLGITLGLRSG-------GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGT 148 (298)
Q Consensus 80 ~i~~~~v~~~~~~~-------~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~ 148 (298)
+++++||++.|+.+ .. .+++|+||+|++||+++|+ |+| || |+++ +
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~-------~il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l-- 57 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRA-------PVLTNVSLSIEEGETVGLL--------GRSGCGKSTLARL-------L-- 57 (265)
T ss_pred eEEEEeEEEEeccCccccccCce-------EEeeCceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H--
Confidence 47899999999632 12 2899999999999999999 999 99 9999 8
Q ss_pred ccccccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400 149 LRDQLWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211 (298)
Q Consensus 149 ~~~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 211 (298)
+|+++|++|+|... .++.|+|+||++. ++ ..|++||+.++.............+++.++++
T Consensus 58 --~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 135 (265)
T TIGR02769 58 --LGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLD 135 (265)
T ss_pred --hCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999997521 1346999999973 43 46999998754210000001112356778899
Q ss_pred HcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEE
Q psy11400 212 KVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFT 286 (298)
Q Consensus 212 ~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIi 286 (298)
.+++. ...+++ +.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++ .++|+|+
T Consensus 136 ~~gl~~~~~~~~---------~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 136 MVGLRSEDADKL---------PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred HcCCChhhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99985 444442 678999999999999999999999999999999999999888887764 3899999
Q ss_pred EecCcchhh
Q psy11400 287 VSHRKSLWT 295 (298)
Q Consensus 287 itH~l~~~~ 295 (298)
+||+++.+.
T Consensus 207 vsH~~~~~~ 215 (265)
T TIGR02769 207 ITHDLRLVQ 215 (265)
T ss_pred EeCCHHHHH
Confidence 999998764
No 157
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.3e-34 Score=254.91 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=146.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 2 ~i~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~ 53 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FK--------ALNDLSLYVDPGELRVII--------GPNGAGKTTMMDV-------I----TGKTR 53 (242)
T ss_pred eEEEEeeEEEcCC-eE--------EeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhh-------hhcCCCHHHHHHHHHHcCC
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDM-------IQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~-------~~~~~~~~~i~~~l~~~~l 215 (298)
|++|+|... .+..++|+||++.++.. |++||+.++...... .......+++.++++.+++
T Consensus 54 p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 133 (242)
T TIGR03411 54 PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL 133 (242)
T ss_pred CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC
Confidence 999987531 12459999999988764 999999875321100 0001123467788888888
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
.+..++ .+.+||||||||++|||||+.+|++++|||||++||+.+...+.+++++ .++|+|++||+++.
T Consensus 134 ~~~~~~---------~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 204 (242)
T TIGR03411 134 ADEADR---------LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204 (242)
T ss_pred chhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 765544 3679999999999999999999999999999999999999999998875 36899999999987
Q ss_pred hhh
Q psy11400 294 WTH 296 (298)
Q Consensus 294 ~~~ 296 (298)
+..
T Consensus 205 ~~~ 207 (242)
T TIGR03411 205 VRS 207 (242)
T ss_pred HHH
Confidence 753
No 158
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-34 Score=261.90 Aligned_cols=186 Identities=22% Similarity=0.196 Sum_probs=147.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++... .+ ...+|+|+||+|++||+++|+ |+| || |+++ + .|++
T Consensus 3 ~~l~~~~l~~~~~~~~~-~~--~~~vl~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~ 60 (280)
T PRK13633 3 EMIKCKNVSYKYESNEE-ST--EKLALDDVNLEVKKGEFLVIL--------GRNGSGKSTIAKH-------M----NALL 60 (280)
T ss_pred ceEEEeeeEEEcCCCCC-CC--CcceeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 36899999999974210 00 001999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 155 PLFGGTVTKP------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 155 ~~~~G~i~~~------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
+|++|+|... .++.++|+||+|. ++..|+.+|+.++...... .....++.+.++++.+++.++.+
T Consensus 61 ~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~ 139 (280)
T PRK13633 61 IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI-PPEEIRERVDESLKKVGMYEYRR 139 (280)
T ss_pred CCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHCCCHhHhh
Confidence 9999987521 1457999999984 5556899999875321100 01112356788899999987766
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+..
T Consensus 140 ~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 140 HA---------PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred CC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 53 679999999999999999999999999999999999999999888764 38999999999987653
No 159
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=258.31 Aligned_cols=184 Identities=18% Similarity=0.184 Sum_probs=143.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||+++|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 5 ~~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 56 (253)
T PRK14242 5 PKMEARGLSFFYGD-FQ--------ALHDISLEFEQNQVTALI--------GPSGCGKSTFLRC-------L----NRMN 56 (253)
T ss_pred cEEEEeeeEEEECC-ee--------eecceeEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhc
Confidence 35899999999963 33 899999999999999999 999 99 9999 7 8875
Q ss_pred c-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 P-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+ |++|+|... .++.++|+||++.++..|++||+.++.............+++.++++.+++.
T Consensus 57 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (253)
T PRK14242 57 DLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALW 136 (253)
T ss_pred ccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc
Confidence 3 578987421 1357999999998887899999987531100000001234577788888885
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~ 294 (298)
+.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|||++||+++.+
T Consensus 137 ~~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~ 211 (253)
T PRK14242 137 DEVKD-----RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA 211 (253)
T ss_pred hhhhH-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence 42211 01123679999999999999999999999999999999999999999888775 368999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 212 ~ 212 (253)
T PRK14242 212 A 212 (253)
T ss_pred H
Confidence 4
No 160
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.3e-34 Score=269.75 Aligned_cols=179 Identities=21% Similarity=0.215 Sum_probs=146.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+|+++||++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + .|++
T Consensus 40 ~~i~i~nl~k~y~~-~~--------~l~~is~~i~~Gei~gLl--------GpNGaGKSTLl~~-------L----~Gl~ 91 (340)
T PRK13536 40 VAIDLAGVSKSYGD-KA--------VVNGLSFTVASGECFGLL--------GPNGAGKSTIARM-------I----LGMT 91 (340)
T ss_pred eeEEEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCC
Confidence 36999999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 155 PLFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
+|++|+|... .++.|||+||++.++ ..|+.||+.+....... ......+.+.++++.+++.+..+++
T Consensus 92 ~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~L~~~~~~~- 169 (340)
T PRK13536 92 SPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-STREIEAVIPSLLEFARLESKADAR- 169 (340)
T ss_pred CCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhCCC-
Confidence 9999998531 246799999999875 56999999753211100 0001123466788888887665543
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+++|+++||||||+|||+.++..+++++++ .|+|||++||+++.+.
T Consensus 170 --------~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~ 236 (340)
T PRK13536 170 --------VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE 236 (340)
T ss_pred --------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 679999999999999999999999999999999999999999988765 4899999999999764
No 161
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.1e-34 Score=249.76 Aligned_cols=175 Identities=23% Similarity=0.254 Sum_probs=145.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + .|+++
T Consensus 2 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 53 (207)
T PRK13539 2 MLEGEDLACVRGG-RV--------LFSGLSFTLAAGEALVLT--------GPNGSGKTTLLRL-------I----AGLLP 53 (207)
T ss_pred EEEEEeEEEEECC-eE--------EEeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc--------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 156 LFGGTVTKP--------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 156 ~~~G~i~~~--------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
|++|+|... .++.++|++|++.++ ..|+++|+.+.... .....+++.++++.+++.++.+++
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~---- 124 (207)
T PRK13539 54 PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAF-----LGGEELDIAAALEAVGLAPLAHLP---- 124 (207)
T ss_pred CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHh-----cCCcHHHHHHHHHHcCCHHHHcCC----
Confidence 999998532 245699999888664 57999999764211 112345688899999997655443
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..
T Consensus 125 -----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 125 -----FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred -----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 578999999999999999999999999999999999999999888764 38999999999987653
No 162
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=262.20 Aligned_cols=179 Identities=22% Similarity=0.276 Sum_probs=145.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||+++|+.... +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~ 53 (275)
T PRK13639 1 ILETRDLKYSYPDGTE--------ALKGINFKAEKGEMVALL--------GPNGAGKSTLFLH-------F----NGILK 53 (275)
T ss_pred CEEEEEEEEEeCCCCe--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999963333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.|+|+||++ .++..|+.||+.++..... .......+++.++++.+++.++.+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~ 132 (275)
T PRK13639 54 PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSKEEVEKRVKEALKAVGMEGFEN 132 (275)
T ss_pred CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchhhc
Confidence 999998421 135699999997 4567899999986421100 000011245778899999976665
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .+.|||++||+++.+.
T Consensus 133 ~~---------~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 133 KP---------PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred CC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 53 679999999999999999999999999999999999999999888765 3899999999998765
No 163
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-34 Score=261.48 Aligned_cols=179 Identities=21% Similarity=0.251 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. +++|+||+|++||+++|+ |+| || |+++ | +|+++
T Consensus 3 ~l~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~i~--------G~NGsGKSTLl~~-------l----~Gl~~ 55 (277)
T PRK13652 3 LIETRDLCYSYSGSKE--------ALNNINFIAPRNSRIAVI--------GPNGAGKSTLFRH-------F----NGILK 55 (277)
T ss_pred eEEEEEEEEEeCCCCc--------eeeEeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 4789999999964344 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|... .++.++|+||++. ++..|+.+|+.++..... .......+.+.++++.+++.+..++.
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~ 134 (277)
T PRK13652 56 PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG-LDEETVAHRVSSALHMLGLEELRDRV 134 (277)
T ss_pred CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCC
Confidence 999998531 1346999999983 567899999986431100 00011124577889999997766553
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+..||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .+.|+|++||+++.+.
T Consensus 135 ---------~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 135 ---------PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred ---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 679999999999999999999999999999999999999999887764 3799999999998764
No 164
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.5e-34 Score=249.03 Aligned_cols=162 Identities=25% Similarity=0.279 Sum_probs=132.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-------------CC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-------------PR 166 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-------------~r 166 (298)
+++|+||+|++||+++|+ ||| || |+++ + .|+++|++|+|... .+
T Consensus 7 il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 67 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALL--------GANGAGKSTLLLH-------L----NGLLRPQSGAVLIDGEPLDYSRKGLLERR 67 (190)
T ss_pred eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceeEEECCEEccccccchHHHH
Confidence 899999999999999999 999 99 9999 8 99999999997521 13
Q ss_pred CcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400 167 GKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA 244 (298)
Q Consensus 167 ~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla 244 (298)
+.++|+||++ .++..|++||+.++...... ......+++.++++.+++.+..+++ +.+||||||||++
T Consensus 68 ~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~ 137 (190)
T TIGR01166 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL-SEAEVERRVREALTAVGASGLRERP---------THCLSGGEKKRVA 137 (190)
T ss_pred hhEEEEecChhhccccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCchhhhhCC---------hhhCCHHHHHHHH
Confidence 4699999998 35678999999874211000 0001124567888999987665553 6799999999999
Q ss_pred HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+
T Consensus 138 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 138 IAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 99999999999999999999999999999888765 379999999998753
No 165
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.9e-34 Score=258.40 Aligned_cols=178 Identities=24% Similarity=0.247 Sum_probs=143.9
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
|+++||++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 i~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (252)
T TIGR03005 1 VRFSDVTKRFGI-LT--------VLDGLNFSVAAGEKVALI--------GPSGSGKSTILRI-------L----MTLEPI 52 (252)
T ss_pred CEEEEEEEEeCC-ee--------EEeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400 157 FGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211 (298)
Q Consensus 157 ~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 211 (298)
++|+|... .++.++|+||++.++. .|+.||+.++.............+.+.++++
T Consensus 53 ~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~ 132 (252)
T TIGR03005 53 DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLD 132 (252)
T ss_pred CceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99987421 1456999999998764 7999999874210000000112345778899
Q ss_pred HcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 212 ~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
.+++.+..++. +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++
T Consensus 133 ~~gl~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv 203 (252)
T TIGR03005 133 MVGLADKADHM---------PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV 203 (252)
T ss_pred HcCChhHhhcC---------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 99987665543 678999999999999999999999999999999999999988887764 38999999
Q ss_pred ecCcchhh
Q psy11400 288 SHRKSLWT 295 (298)
Q Consensus 288 tH~l~~~~ 295 (298)
||+++.+.
T Consensus 204 sH~~~~~~ 211 (252)
T TIGR03005 204 THEMGFAR 211 (252)
T ss_pred eCCHHHHH
Confidence 99998763
No 166
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.2e-34 Score=253.22 Aligned_cols=180 Identities=24% Similarity=0.291 Sum_probs=145.0
Q ss_pred EEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 81 RGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 81 i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
++++|+++.|+.+. .. +++|+||++++|++++|+ |+| || |+++ | +|++
T Consensus 2 l~~~~l~~~~~~~~~~~~-------il~~vs~~i~~G~~~~I~--------G~nGsGKStLl~~-------l----~G~~ 55 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQ-------VLFDINLEINPGEIVILT--------GPSGSGKTTLLTL-------I----GGLR 55 (220)
T ss_pred EEEEEEEEEccCCCccee-------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 68999999996431 22 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 155 PLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 155 ~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
+|++|+|... .++.++|+||++.++. .|+.+|+.++.............+.+.++++.+++.+..
T Consensus 56 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 135 (220)
T TIGR02982 56 SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL 135 (220)
T ss_pred CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh
Confidence 9999997531 1357999999998776 699999986431110000001124577889999997666
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++. +.+||+|||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++...
T Consensus 136 ~~~---------~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~ 206 (220)
T TIGR02982 136 DYY---------PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD 206 (220)
T ss_pred hcC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 553 578999999999999999999999999999999999999888887754 3799999999998654
No 167
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.8e-34 Score=248.01 Aligned_cols=173 Identities=21% Similarity=0.238 Sum_probs=143.3
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + .|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (198)
T TIGR01189 1 LAARNLACSRGE-RM--------LFEGLSFTLNAGEALQVT--------GPNGIGKTTLLRI-------L----AGLLRP 52 (198)
T ss_pred CEEEEEEEEECC-EE--------EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999953 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|+|... .++.++|++|++.++. .|+.+|+.+.... .......+.++++.+++.+..+++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~--- 124 (198)
T TIGR01189 53 DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAI-----HGGAQRTIEDALAAVGLTGFEDLP--- 124 (198)
T ss_pred CccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHH-----cCCcHHHHHHHHHHcCCHHHhcCC---
Confidence 99997531 1357999999988765 6999999764211 111234678889999998766543
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++||||++.+|++++|||||++||+.+...+.+.+++ .+.|+|++||+...+.
T Consensus 125 ------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 125 ------AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred ------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 678999999999999999999999999999999999999999888765 3889999999986443
No 168
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-33 Score=246.76 Aligned_cols=167 Identities=21% Similarity=0.254 Sum_probs=138.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.++++|+++.|+....+ +++|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 5 ~~l~~~~l~~~~~~~~~~-------~l~~isl~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 58 (207)
T cd03369 5 GEIEVENLSVRYAPDLPP-------VLKNVSFKVKAGEKIGIV--------GRTGAGKSTLILA-------L----FRFL 58 (207)
T ss_pred CeEEEEEEEEEeCCCCcc-------cccCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence 458999999999743222 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
+|++|+|... .++.|+|+||++.++.+|+++|+.+.. ....+++.++++ + +
T Consensus 59 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~--------~~~~~~~~~~l~---~----~--- 120 (207)
T cd03369 59 EAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD--------EYSDEEIYGALR---V----S--- 120 (207)
T ss_pred CCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccC--------CCCHHHHHHHhh---c----c---
Confidence 9999998532 246799999999988889999997532 122333444443 1 1
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
.++..|||||+||++|||||+.+|+++||||||++||+.+.+.+.+++++. ++|+|++||+++.+.
T Consensus 121 ------~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 121 ------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred ------CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 246799999999999999999999999999999999999999999988763 789999999998764
No 169
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.1e-34 Score=250.58 Aligned_cols=176 Identities=18% Similarity=0.162 Sum_probs=145.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++++||+|++||+++|+ |+| || |+++ + +|++
T Consensus 10 ~~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~ 61 (214)
T PRK13543 10 PLLAAHALAFSRNE-EP--------VFGPLDFHVDAGEALLVQ--------GDNGAGKTTLLRV-------L----AGLL 61 (214)
T ss_pred ceEEEeeEEEecCC-ce--------eeecceEEECCCCEEEEE--------cCCCCCHHHHHHH-------H----hCCC
Confidence 46899999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc--------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 155 PLFGGTVTKP--------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 155 ~~~~G~i~~~--------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
+|++|+|... .++.++|++|++.++.. |++||+.+..... .....+.+.++++.+++.+..++
T Consensus 62 ~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~---- 133 (214)
T PRK13543 62 HVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH----GRRAKQMPGSALAIVGLAGYEDT---- 133 (214)
T ss_pred CCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc----CCcHHHHHHHHHHHcCChhhccC----
Confidence 9999998542 13459999999987764 9999997642110 11123456778888888765444
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++||||++.+|+++||||||++||+...+.+.+.+++ .+.|+|++||+++.+.
T Consensus 134 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 134 -----LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 3678999999999999999999999999999999999999999888764 3899999999998765
No 170
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.7e-34 Score=250.38 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=143.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|+ . .++|+||++++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 ~~~~~l~~~~~---~--------~~~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 50 (213)
T TIGR01277 1 LALDKVRYEYE---H--------LPMEFDLNVADGEIVAIM--------GPSGAGKSTLLNL-------I----AGFIEP 50 (213)
T ss_pred CeEEeeeEEeC---C--------cceeeEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence 36899999995 1 567999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++. .|+.||+.++.... ........+++.++++.+++.+..+++
T Consensus 51 ~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~---- 125 (213)
T TIGR01277 51 ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG-LKLNAEQQEKVVDAAQQVGIADYLDRL---- 125 (213)
T ss_pred CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc-CCccHHHHHHHHHHHHHcCcHHHhhCC----
Confidence 99987531 2456999999998876 59999997653110 000111245677889999997766553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .+.|+|++||+++.+.
T Consensus 126 -----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 126 -----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988887764 3789999999998754
No 171
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-34 Score=258.20 Aligned_cols=185 Identities=19% Similarity=0.180 Sum_probs=144.2
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.+.++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+
T Consensus 11 ~~~l~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl 62 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FH--------ALKNINLDIAKNQVTAFI--------GPSGCGKSTLLRT-------F----NRM 62 (260)
T ss_pred CceEEEEEEEEEeCC-eE--------EeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 357999999999963 33 899999999999999999 999 99 9999 8 888
Q ss_pred cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
++ |++|+|... .+++++|+||++.++..|+++|+.++.............+++.++++.+++
T Consensus 63 ~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l 142 (260)
T PRK10744 63 YELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL 142 (260)
T ss_pred cccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 75 478987421 145799999999888899999998753110000000112457788888887
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
...+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.
T Consensus 143 ~~~~~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 143 WNEVKD-----KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred ChhhHH-----HHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 432110 01123679999999999999999999999999999999999999999888875 36899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 218 ~~ 219 (260)
T PRK10744 218 AA 219 (260)
T ss_pred HH
Confidence 64
No 172
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.8e-34 Score=267.74 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=145.7
Q ss_pred CcEEEeeeeEecCCCCC-CC---CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400 79 NLRGRLGITLGLRSGGL-GF---DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR 150 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~-~~---~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~ 150 (298)
..++++|+++.|+.+.. .+ .....++++|+||+|++||+++|+ |+| || |+++ +
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lv--------G~sGsGKSTLlk~-------i---- 67 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVV--------GESGCGKSTFARA-------I---- 67 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----
Confidence 46899999999963210 00 000123899999999999999999 999 99 9999 8
Q ss_pred ccccccCCceeecc--------------CCCcEEEEcCcC--CCC-CCCHHHHHccCCcchh-hhhcCCCHHHHHHHHHH
Q psy11400 151 DQLWPLFGGTVTKP--------------PRGKLFYVPQRP--YMT-LGTLRDQVIYPHTKED-MIQKGITDADLTEYLQK 212 (298)
Q Consensus 151 ~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~i~~~l~~ 212 (298)
.|+.+|++|+|... .+++|+||||+| .++ ..|+.+|+.++..... ........+.+.++++.
T Consensus 68 ~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 147 (331)
T PRK15079 68 IGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK 147 (331)
T ss_pred HCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 99999999987521 245799999998 355 5799999976421100 00011123456788999
Q ss_pred cCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 213 ~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
+++. +..++ ++.+|||||||||+|||||+.+|++||+||||++||+.++..+.+++++ .+.|+|+|
T Consensus 148 vgl~~~~~~~---------~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~i 218 (331)
T PRK15079 148 VGLLPNLINR---------YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI 218 (331)
T ss_pred cCCChHHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 9984 34443 4789999999999999999999999999999999999999998887754 38999999
Q ss_pred ecCcchhhh
Q psy11400 288 SHRKSLWTH 296 (298)
Q Consensus 288 tH~l~~~~~ 296 (298)
||+++.+..
T Consensus 219 THdl~~~~~ 227 (331)
T PRK15079 219 AHDLAVVKH 227 (331)
T ss_pred eCCHHHHHH
Confidence 999998764
No 173
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.7e-33 Score=302.87 Aligned_cols=239 Identities=16% Similarity=0.177 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeE
Q psy11400 10 MGRMLVKLAEAIG-RLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITL 88 (298)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 88 (298)
...++..+..++. .+......+.++.++..||.+++...+..... .. .....+.++|++|
T Consensus 340 ~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--------------~~-----~~~~~i~~~~~~f 400 (1490)
T TIGR01271 340 TISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--------------YN-----LTTTEVEMVNVTA 400 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--------------cc-----CCCCceEEecceE
Confidence 3344444444543 46666777888999999999998653221100 00 0012477777777
Q ss_pred ecCCCC----------C-----C----------CCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecC
Q psy11400 89 GLRSGG----------L-----G----------FDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVP 139 (298)
Q Consensus 89 ~~~~~~----------~-----~----------~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~ 139 (298)
.|+... . . ....+.++|+|+||+|++|+.++|+ ||| || |+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~--------G~~GsGKSTLl~~- 471 (1490)
T TIGR01271 401 SWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVA--------GSTGSGKSSLLMM- 471 (1490)
T ss_pred ecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-
Confidence 774210 0 0 0000123899999999999999999 999 99 9999
Q ss_pred ccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 140 QRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
+ .|+++|++|+|... .+|+||||+|+++++|++|||.|+.. .+.++..++++.+++.+.+
T Consensus 472 ------l----~G~~~~~~G~i~~~--g~iayv~Q~~~l~~~Ti~eNI~~g~~--------~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 472 ------I----MGELEPSEGKIKHS--GRISFSPQTSWIMPGTIKDNIIFGLS--------YDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred ------H----hCCCCCCCceEEEC--CEEEEEeCCCccCCccHHHHHHhccc--------cchHHHHHHHHHHhHHHHH
Confidence 8 99999999999754 36999999999999999999998742 1233455666767776655
Q ss_pred hh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH-HHh--cCcEEEEEecCcchh
Q psy11400 220 NR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-CRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 220 ~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~-l~~--~~~TiIiitH~l~~~ 294 (298)
+. +.|.+|..+ .+.+|||||||||+||||++.+|+++||||||||||+.+++.+++. +++ .++|+|+|||+++.+
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~ 611 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHL 611 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHH
Confidence 54 667777655 7889999999999999999999999999999999999999999874 333 389999999999876
Q ss_pred hh
Q psy11400 295 TH 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 612 ~~ 613 (1490)
T TIGR01271 612 KK 613 (1490)
T ss_pred Hh
Confidence 54
No 174
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-34 Score=260.89 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=143.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 1 ml~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 52 (271)
T PRK13638 1 MLATSDLWFRYQD-EP--------VLKGLNLDFSLSPVTGLV--------GANGCGKSTLFMN-------L----SGLLR 52 (271)
T ss_pred CeEEEEEEEEcCC-cc--------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.|+|+||++. ++..++.+|+.++...... ......+++.++++.+++.++.+
T Consensus 53 p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~ 131 (271)
T PRK13638 53 PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGV-PEAEITRRVDEALTLVDAQHFRH 131 (271)
T ss_pred CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHhHhc
Confidence 999997421 1346999999985 4567899999764211000 00011235677888888876655
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .++|+|++||+++.+.
T Consensus 132 ~~---------~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 132 QP---------IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred CC---------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 43 679999999999999999999999999999999999999999888765 3789999999998764
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=259.12 Aligned_cols=182 Identities=21% Similarity=0.209 Sum_probs=146.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|+....+ +++|+||+|++||+++|+ |+| || |+++ + +|++
T Consensus 4 ~~l~i~~l~~~~~~~~~~-------~l~~v~l~i~~Ge~~~I~--------G~nGaGKSTLl~~-------l----~G~~ 57 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKP-------ALNDISFSIPRGSWTALI--------GHNGSGKSTISKL-------I----NGLL 57 (282)
T ss_pred ceEEEEEEEEEcCCCCcc-------ceeeEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hccc
Confidence 468999999999643322 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCC---ceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 155 PLFG---GTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 155 ~~~~---G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
+|++ |+|... .+++++|+||++. ++..|+.||+.++...... ......+++.++++.+++.++
T Consensus 58 ~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~ 136 (282)
T PRK13640 58 LPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIKIVRDVLADVGMLDY 136 (282)
T ss_pred CCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCC-CHHHHHHHHHHHHHHCCChhH
Confidence 9987 787521 2457999999984 5678999999875311000 000112457788999999876
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.+++ +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|||++||+++.+
T Consensus 137 ~~~~---------~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 137 IDSE---------PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA 207 (282)
T ss_pred hcCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 6553 679999999999999999999999999999999999999998888764 379999999999876
Q ss_pred hh
Q psy11400 295 TH 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 208 ~~ 209 (282)
T PRK13640 208 NM 209 (282)
T ss_pred Hh
Confidence 53
No 176
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-34 Score=262.66 Aligned_cols=181 Identities=18% Similarity=0.107 Sum_probs=143.0
Q ss_pred CcEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 79 NLRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
+.++++|+++.|++.. .+ +++|+||+|++||+++|+ |+| || |+++ + +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~-------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~ 58 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFK-------ALNNTSLTFKKNKVTCVI--------GTTGSGKSTMIQL-------T----N 58 (289)
T ss_pred ceEEEEEEEEEeCCCCccccc-------eeeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence 4689999999996432 12 899999999999999999 999 99 9999 8 9
Q ss_pred cccccCCceeecc----------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400 152 QLWPLFGGTVTKP----------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213 (298)
Q Consensus 152 ~l~~~~~G~i~~~----------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 213 (298)
|+++|++|+|... .++.|+|+||++. ++..|++||+.++...... ......+.+.++++.+
T Consensus 59 Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~ll~~~ 137 (289)
T PRK13645 59 GLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE-NKQEAYKKVPELLKLV 137 (289)
T ss_pred cCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 9999999987421 1346999999983 5667999999875311000 0000123466778888
Q ss_pred CCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400 214 QLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS 288 (298)
Q Consensus 214 ~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit 288 (298)
++. .+.++ .+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .++|+|+||
T Consensus 138 ~L~~~~~~~---------~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiis 208 (289)
T PRK13645 138 QLPEDYVKR---------SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208 (289)
T ss_pred CCChhHhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 884 44444 3679999999999999999999999999999999999999998887654 379999999
Q ss_pred cCcchhh
Q psy11400 289 HRKSLWT 295 (298)
Q Consensus 289 H~l~~~~ 295 (298)
|+++.+.
T Consensus 209 H~~~~~~ 215 (289)
T PRK13645 209 HNMDQVL 215 (289)
T ss_pred cCHHHHH
Confidence 9998654
No 177
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=255.79 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=145.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++++|++ .. +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 53 (255)
T PRK11231 2 TLRTENLTVGYGT-KR--------ILNDLSLSLPTGKITALI--------GPNGCGKSTLLKC-------F----ARLLT 53 (255)
T ss_pred EEEEEeEEEEECC-EE--------EEeeeeeEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCC-CHHHHHccCCcch-hhhh--cCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKE-DMIQ--KGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~--~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.++|+||++.++.. |+.||+.++.... .... .....+++.++++.+++.+..+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (255)
T PRK11231 54 PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD 133 (255)
T ss_pred CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc
Confidence 999987532 13469999999987754 9999998753110 0000 0112345778889999876655
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+. +.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 134 ~~---------~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~ 202 (255)
T PRK11231 134 RR---------LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAS 202 (255)
T ss_pred CC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 43 679999999999999999999999999999999999999999888764 3799999999998764
No 178
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-34 Score=261.49 Aligned_cols=176 Identities=22% Similarity=0.193 Sum_probs=142.2
Q ss_pred EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
.++|+++.|.+ .. +++|+||+|++|++++|+ ||| || |+++ | +|+++|+
T Consensus 26 ~~~~~~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------L----~Gl~~p~ 77 (269)
T cd03294 26 SKEEILKKTGQ-TV--------GVNDVSLDVREGEIFVIM--------GLSGSGKSTLLRC-------I----NRLIEPT 77 (269)
T ss_pred hhhhhhhhcCC-ce--------EeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCC
Confidence 56788888853 33 899999999999999999 999 99 9999 8 9999999
Q ss_pred Cceeecc---------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 158 GGTVTKP---------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 158 ~G~i~~~---------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|+|... .+++++|+||++.++ ..|+.||+.++...... ......+++.++++.+++.+..++
T Consensus 78 ~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~ 156 (269)
T cd03294 78 SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHK 156 (269)
T ss_pred CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhC
Confidence 9987531 124699999999877 46999999874211000 001123457788999999776655
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+ +.+||||||||++|||||+++|++|||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.
T Consensus 157 ~---------~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 157 Y---------PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred C---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3 679999999999999999999999999999999999999999887754 2799999999998754
No 179
>KOG0054|consensus
Probab=100.00 E-value=5e-33 Score=293.17 Aligned_cols=241 Identities=22% Similarity=0.247 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeee
Q psy11400 8 YTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGIT 87 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 87 (298)
++...++..+..|+..+-.....+.++..+..|+.+++...+-... ...+ ......+..++++|.+
T Consensus 460 F~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~-~~~~-------------~~~~~~~~~i~i~~~s 525 (1381)
T KOG0054|consen 460 FTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD-SVER-------------SPDEAGENAIEIKNGS 525 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc-cccc-------------CCCCCCCceEEEeeee
Confidence 3455666777788888888888899999999999999986432211 0000 0011223569999999
Q ss_pred EecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400 88 LGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT 162 (298)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~ 162 (298)
|++... ..+ .|+||||+|++|+.+||+ |+. || |+.. + .|-.+..+|++.
T Consensus 526 fsW~~~~~~~-------tL~dIn~~i~~G~lvaVv--------G~vGsGKSSLL~A-------i----LGEm~~~sG~v~ 579 (1381)
T KOG0054|consen 526 FSWDSESPEP-------TLKDINFEIKKGQLVAVV--------GPVGSGKSSLLSA-------I----LGEMPKLSGSVA 579 (1381)
T ss_pred EecCCCCCcc-------cccceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcccccceEE
Confidence 998542 222 899999999999999999 999 99 7777 6 777788899887
Q ss_pred ccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHH
Q psy11400 163 KPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEK 240 (298)
Q Consensus 163 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqk 240 (298)
.. ..++||||.||++++||||||+|+. ..++++.+++++.+.|...++. |.|-.|.++ +|-+||||||
T Consensus 580 v~--gsiaYv~Q~pWI~ngTvreNILFG~--------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 580 VN--GSVAYVPQQPWIQNGTVRENILFGS--------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred Ec--CeEEEeccccHhhCCcHHHhhhcCc--------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 64 4599999999999999999999985 3567788899999999876655 777777766 8999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhcC
Q psy11400 241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~~ 298 (298)
||+++|||++++.++++||.|.||+|..+.++|++.+-. .++|+|+|||.++..++.|
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad 710 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHAD 710 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCC
Confidence 999999999999999999999999999999999886543 3799999999999887654
No 180
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=256.72 Aligned_cols=180 Identities=21% Similarity=0.201 Sum_probs=145.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 10 ~~l~i~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 61 (265)
T PRK10575 10 TTFALRNVSFRVPG-RT--------LLHPLSLTFPAGKVTGLI--------GHNGSGKSTLLKM-------L----GRHQ 61 (265)
T ss_pred ceEEEeeEEEEECC-EE--------EEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence 36899999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hhh--hcCCCHHHHHHHHHHcCCchhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DMI--QKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~--~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
+|++|+|... .++.++|+||++.++ ..|+.||+.++.... ... ......+++.++++.+++.+..
T Consensus 62 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 141 (265)
T PRK10575 62 PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA 141 (265)
T ss_pred CCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence 9999998532 135699999998665 459999998753210 000 0011234678889999987665
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++. +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 142 ~~~---------~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 142 HRL---------VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred cCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 543 678999999999999999999999999999999999999988887754 3799999999998764
No 181
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.2e-34 Score=240.17 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=147.8
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
+.+++|.|.|.. . =-.++++|+.||++||+ ||| || |+++ + +|+..|
T Consensus 2 l~L~~V~~~y~~--~---------~~~fdl~v~~ge~vAi~--------GpSGaGKSTLLnL-------I----AGF~~P 51 (231)
T COG3840 2 LALDDVRFSYGH--L---------PMRFDLTVPAGEIVAIL--------GPSGAGKSTLLNL-------I----AGFETP 51 (231)
T ss_pred ccccceEEeeCc--c---------eEEEEEeecCCcEEEEE--------CCCCccHHHHHHH-------H----HhccCC
Confidence 678899999952 2 24589999999999999 999 99 9999 8 999999
Q ss_pred CCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
.+|.|.. +..+-++++||+..+|. .||.+|+.++..+.-.. .....++++.++.++|+..+.++.
T Consensus 52 ~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~~RL---- 126 (231)
T COG3840 52 ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFLKRL---- 126 (231)
T ss_pred CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHhhhC----
Confidence 9999853 34567999999999985 69999999986542111 123457889999999999998885
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchhhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||+++||+|+++-+|++||||+|+|||..+.++..+ +.+.+.|+++|||.++.++.
T Consensus 127 -----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ 195 (231)
T COG3840 127 -----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195 (231)
T ss_pred -----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH
Confidence 679999999999999999999999999999999999888777655 45579999999999987653
No 182
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=251.09 Aligned_cols=176 Identities=21% Similarity=0.214 Sum_probs=143.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+. . ..|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~--~---------~~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 50 (232)
T PRK10771 1 MLKLTDITWLYHH--L---------PMRFDLTVERGERVAIL--------GPSGAGKSTLLNL-------I----AGFLT 50 (232)
T ss_pred CeEEEEEEEEECC--c---------cceeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999952 2 23899999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .++.++|+||++.++. .|+.||+.++.... .......++++.++++.+++.+..+++
T Consensus 51 ~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~--- 126 (232)
T PRK10771 51 PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIEDLLARL--- 126 (232)
T ss_pred CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHHHHhCC---
Confidence 999998532 1356999999998876 59999998753210 000111245678899999998766653
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 127 ------~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 127 ------PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred ------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 679999999999999999999999999999999999999988887754 3789999999998764
No 183
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8e-34 Score=252.81 Aligned_cols=174 Identities=20% Similarity=0.211 Sum_probs=139.9
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+.+|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SH--------ILRGVSLEVPKGEVTCVL--------GRNGVGKTTLLKT-------L----MGLLPV 52 (230)
T ss_pred CEEEeEEEEeCC-eE--------EecceeeEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcC-Cchhhhhc
Q psy11400 157 FGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNRE 222 (298)
Q Consensus 157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~~ 222 (298)
++|+|... .++.++|+||++.++.. |+.+|+.++.... .....+...++++.++ +.+..++
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~- 127 (230)
T TIGR03410 53 KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL----PRRSRKIPDEIYELFPVLKEMLGR- 127 (230)
T ss_pred CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc----CcchHHHHHHHHHHHHhHHHHhhC-
Confidence 99997531 13469999999988764 9999998653211 0111233455666665 3333333
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 128 --------~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 128 --------RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAR 196 (230)
T ss_pred --------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 3679999999999999999999999999999999999999999888765 2789999999998765
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=257.47 Aligned_cols=185 Identities=20% Similarity=0.207 Sum_probs=145.4
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+..|+++||++.|++ .. +|+|+||+|++|++++|+ |+| || |+++ + .|+
T Consensus 17 ~~~l~~~nl~~~~~~-~~--------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl 68 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQ--------ALFDVDLDIPEKTVTAFI--------GPSGCGKSTFLRC-------L----NRM 68 (267)
T ss_pred CceEEEEeEEEEECC-EE--------EEEEEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhh
Confidence 347999999999963 33 899999999999999999 999 99 9999 8 898
Q ss_pred ccc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcC
Q psy11400 154 WPL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQ 214 (298)
Q Consensus 154 ~~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~ 214 (298)
++| ++|+|... .++.++|+||++.++..|+.||+.++....... ......+++.++++.++
T Consensus 69 ~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (267)
T PRK14235 69 NDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG 148 (267)
T ss_pred cccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 874 88987521 135699999999888789999998753111000 00111345678889999
Q ss_pred CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS 292 (298)
Q Consensus 215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~ 292 (298)
+.+.+.. .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .+.|+|++||+++
T Consensus 149 l~~~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~ 223 (267)
T PRK14235 149 LWEEVKD-----RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223 (267)
T ss_pred CchhhhH-----HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence 8642210 01123679999999999999999999999999999999999999999988875 3689999999998
Q ss_pred hhh
Q psy11400 293 LWT 295 (298)
Q Consensus 293 ~~~ 295 (298)
.+.
T Consensus 224 ~~~ 226 (267)
T PRK14235 224 QAA 226 (267)
T ss_pred HHH
Confidence 764
No 185
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-34 Score=265.41 Aligned_cols=190 Identities=22% Similarity=0.275 Sum_probs=145.2
Q ss_pred CcEEEeeeeEecCCCCCCCC-CCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFD-SRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~-~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
..|+++|+++.|+.....+. .....+++|+||+|++||+++|+ |+| || |+++ + .|+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~Iv--------G~sGsGKSTLl~~-------l----~gl 64 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVV--------GESGCGKSTLARL-------L----TMI 64 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----HcC
Confidence 36899999999963210000 00113899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc--------------CCCcEEEEcCcCC--CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 154 WPLFGGTVTKP--------------PRGKLFYVPQRPY--MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
.+|++|+|... .+++|+||||+|+ +.+ .|+.+++..+.............+++.++++.+++.
T Consensus 65 ~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 144 (327)
T PRK11308 65 ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR 144 (327)
T ss_pred CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC
Confidence 99999987421 2457999999984 443 599998864321100000111235678899999996
Q ss_pred h-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCc
Q psy11400 217 Y-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRK 291 (298)
Q Consensus 217 ~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l 291 (298)
+ ..++ ++.+||||||||++|||||+.+|++||+||||++||..+...+++++++ .|.|+|+|||++
T Consensus 145 ~~~~~~---------~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 215 (327)
T PRK11308 145 PEHYDR---------YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215 (327)
T ss_pred hHHhcC---------CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3 4443 3789999999999999999999999999999999999999999887754 389999999999
Q ss_pred chhhh
Q psy11400 292 SLWTH 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
+.+..
T Consensus 216 ~~~~~ 220 (327)
T PRK11308 216 SVVEH 220 (327)
T ss_pred HHHHH
Confidence 98763
No 186
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-33 Score=262.09 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=146.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|++++|++ .. +|+|+||+|++||+++|+ ||| || |+++ + .|+++
T Consensus 2 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Gei~~l~--------G~NGaGKTTLl~~-------l----~Gl~~ 53 (301)
T TIGR03522 2 SIRVSSLTKLYGT-QN--------ALDEVSFEAQKGRIVGFL--------GPNGAGKSTTMKI-------I----TGYLP 53 (301)
T ss_pred EEEEEEEEEEECC-EE--------EEEEeEEEEeCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+|... .+++++|+||++.++. .|+.||+.+....... ......+++.++++.+++.+..++.
T Consensus 54 ~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~-- 130 (301)
T TIGR03522 54 PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM-KGQLLKQRVEEMIELVGLRPEQHKK-- 130 (301)
T ss_pred CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCc--
Confidence 999998531 1457999999998875 5999999763211000 0011134678889999998766553
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
+..||||||||++|||||+++|+++||||||+|||+.+.+.+++.+++. ++|||++||+++.+.
T Consensus 131 -------~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 131 -------IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred -------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 6789999999999999999999999999999999999999999888763 799999999998654
No 187
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=255.03 Aligned_cols=178 Identities=24% Similarity=0.290 Sum_probs=144.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 2 ~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~ 53 (258)
T PRK13548 2 MLEARNLSVRLGG-RT--------LLDDVSLTLRPGEVVAIL--------GPNGAGKSTLLRA-------L----SGELS 53 (258)
T ss_pred eEEEEeEEEEeCC-ee--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
|++|+|... .++.++|+||++.+ +..|++||+.++...... ......+.+.++++.+++.+..++.
T Consensus 54 p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~- 131 (258)
T PRK13548 54 PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL-SRAEDDALVAAALAQVDLAHLAGRD- 131 (258)
T ss_pred CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC-CcHHHHHHHHHHHHHcCCHhHhcCC-
Confidence 999997531 13569999999977 567999999875321100 0011234577889999987655543
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHh------cCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFY------HRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~------~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
+.+||||||||++|||||+ .+|+++||||||++||+.+...+.+++++ .+.|||++||+++.
T Consensus 132 --------~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 203 (258)
T PRK13548 132 --------YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL 203 (258)
T ss_pred --------cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 6799999999999999999 59999999999999999999888877653 47899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 204 ~~ 205 (258)
T PRK13548 204 AA 205 (258)
T ss_pred HH
Confidence 64
No 188
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.2e-34 Score=270.05 Aligned_cols=163 Identities=21% Similarity=0.162 Sum_probs=136.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------C---
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------P--- 165 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~--- 165 (298)
+++|+||+|++||+++|+ |+| || |+++ | .|+++|++|+|... .
T Consensus 8 ~l~~vs~~i~~Gei~~l~--------G~sGsGKSTLLr~-------L----~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~ 68 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIM--------GLSGSGKSTTVRM-------L----NRLIEPTAGQIFIDGENIMKQSPVELREV 68 (363)
T ss_pred eEEeeEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 899999999999999999 999 99 9999 8 99999999998531 1
Q ss_pred -CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400 166 -RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV 243 (298)
Q Consensus 166 -r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl 243 (298)
+++|+||||++.+|+ .|++||+.++...... ......+++.++++.++|..+.++. +.+|||||||||
T Consensus 69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~-~~~~~~~~~~~~l~~vgL~~~~~~~---------p~~LSGGq~QRV 138 (363)
T TIGR01186 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-PEQERKEKALELLKLVGLEEYEHRY---------PDELSGGMQQRV 138 (363)
T ss_pred HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCchhhhCC---------hhhCCHHHHHHH
Confidence 568999999999886 6999999875321100 0011235678899999998776653 679999999999
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+|||||+.+|+++|||||||+||+.+...+.+.+.+ .++|+|+|||+++.+.
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~ 194 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI 194 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999887653 3899999999998653
No 189
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=254.39 Aligned_cols=183 Identities=22% Similarity=0.277 Sum_probs=144.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+++
T Consensus 2 ~~~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 53 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQ--------ALFDINMQIEQNKITALI--------GASGCGKSTFLRC-------F----NRMND 53 (246)
T ss_pred ceeeeeeEEEECC-Ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccC
Confidence 4789999999963 33 899999999999999999 999 99 9999 8 88874
Q ss_pred ---cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhh-cCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 ---LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQ-KGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ---~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .++.++|+||++.++..|++||+.++........ .....+++.++++.+++.+.+.
T Consensus 54 ~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 54 KIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred CCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 689987531 2457999999998888899999987531111000 0112345678899999854321
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
. .....+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 134 ~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 134 D-----KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred H-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 1 01124679999999999999999999999999999999999999999888865 3899999999998654
No 190
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=258.74 Aligned_cols=180 Identities=23% Similarity=0.265 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 80 LRGRLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+++++||++.|+.. ..+ +++|+||+|++||+++|+ |+| || |+++ + +|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~-------~l~~v~l~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl~ 57 (277)
T PRK13642 4 ILEVENLVFKYEKESDVN-------QLNGVSFSITKGEWVSII--------GQNGSGKSTTARL-------I----DGLF 57 (277)
T ss_pred eEEEEEEEEEcCCCCcCe-------eeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence 58999999999742 222 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|++|+|... .++.++|+||++. ++..|+.||+.++...... ......+.+.++++.+++.++.++
T Consensus 58 ~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~ 136 (277)
T PRK13642 58 EEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTR 136 (277)
T ss_pred CCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhC
Confidence 9999998531 2456999999983 5678999999875311000 000012456788899999776655
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+ +..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+.
T Consensus 137 ~---------~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 137 E---------PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA 205 (277)
T ss_pred C---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3 679999999999999999999999999999999999999999888753 3899999999998865
No 191
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-33 Score=254.16 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=144.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 5 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (255)
T PRK11300 5 LLSVSGLMMRFGG-LL--------AVNNVNLEVREQEIVSLI--------GPNGAGKTTVFNC-------L----TGFYK 56 (255)
T ss_pred eEEEeeEEEEECC-EE--------EEEeeeeEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence 6899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch-------hhhh----cC---CCHHHHHH
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-------DMIQ----KG---ITDADLTE 208 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-------~~~~----~~---~~~~~i~~ 208 (298)
|++|+|... .+..++|+||++.++. .|+.||+.++.... .... .. ...+.+.+
T Consensus 57 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (255)
T PRK11300 57 PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT 136 (255)
T ss_pred CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH
Confidence 999987531 1235899999998876 59999998752100 0000 00 11235667
Q ss_pred HHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEE
Q psy11400 209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITL 284 (298)
Q Consensus 209 ~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~Ti 284 (298)
+++.+++.+..+++ +.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .++||
T Consensus 137 ~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 207 (255)
T PRK11300 137 WLERVGLLEHANRQ---------AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTV 207 (255)
T ss_pred HHHhCChhhhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEE
Confidence 78888887655543 679999999999999999999999999999999999999998887754 37899
Q ss_pred EEEecCcchhh
Q psy11400 285 FTVSHRKSLWT 295 (298)
Q Consensus 285 IiitH~l~~~~ 295 (298)
|++||+++.+.
T Consensus 208 i~~sH~~~~~~ 218 (255)
T PRK11300 208 LLIEHDMKLVM 218 (255)
T ss_pred EEEeCCHHHHH
Confidence 99999998764
No 192
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-33 Score=250.65 Aligned_cols=185 Identities=19% Similarity=0.163 Sum_probs=143.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.... +.....+++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ml~~~~l~~~~~~~~~--~~~~~~il~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~ 59 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQ--GGVRLPVLKNVSLTVNAGECVALS--------GPSGAGKSTLLKS-------L----YANYL 59 (224)
T ss_pred CEEEEeeEEEeecccC--CCcceEEEecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999963100 000001899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc--C-----------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 156 LFGGTVTKP--P-----------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 156 ~~~G~i~~~--~-----------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
|++|+|... . ++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++
T Consensus 60 ~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l 138 (224)
T TIGR02324 60 PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNI 138 (224)
T ss_pred CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC
Confidence 999987532 0 246999999997764 599999976421100 0001123466778888888
Q ss_pred chh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400 216 GYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK 291 (298)
Q Consensus 216 ~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l 291 (298)
.+. .++ .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||++
T Consensus 139 ~~~~~~~---------~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 139 PERLWHL---------PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred chhhhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 653 333 3679999999999999999999999999999999999999999888765 389999999999
Q ss_pred chhh
Q psy11400 292 SLWT 295 (298)
Q Consensus 292 ~~~~ 295 (298)
+.+.
T Consensus 210 ~~~~ 213 (224)
T TIGR02324 210 EVRE 213 (224)
T ss_pred HHHH
Confidence 8764
No 193
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2e-33 Score=249.27 Aligned_cols=173 Identities=21% Similarity=0.182 Sum_probs=145.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++||+++|+. .. +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 l~l~~v~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (223)
T TIGR03740 1 LETKNLSKRFGK-QT--------AVNNISLTVPKNSVYGLL--------GPNGAGKSTLLKM-------I----TGILRP 52 (223)
T ss_pred CEEEeEEEEECC-EE--------EEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeeccC-------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400 157 FGGTVTKPP-------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228 (298)
Q Consensus 157 ~~G~i~~~~-------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~ 228 (298)
++|+|.... .+.++|+||++.++. .|++||+.++... ......++.++++.+++.+..++.
T Consensus 53 ~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~------ 121 (223)
T TIGR03740 53 TSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTL-----LGLPDSRIDEVLNIVDLTNTGKKK------ 121 (223)
T ss_pred CceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHH-----cCCCHHHHHHHHHHcCCcHHHhhh------
Confidence 999985321 247999999998765 6999999764211 122356778889999998766553
Q ss_pred cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++||||++.+|++++|||||++||+.+.+.+.+.+++ .+.|+|++||+++.+.
T Consensus 122 ---~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 122 ---AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred ---HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 578999999999999999999999999999999999999999888764 3789999999998764
No 194
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=256.35 Aligned_cols=181 Identities=20% Similarity=0.208 Sum_probs=145.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++.... +++|+||+|++||+++|+ ||| || |+++ + +|++
T Consensus 6 ~~l~i~~l~~~~~~~~~~-------~l~~isl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------i----~Gl~ 59 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASF-------TLKDVSFNIPKGQWTSIV--------GHNGSGKSTIAKL-------M----IGIE 59 (269)
T ss_pred ceEEEEEEEEEcCCCCCc-------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 368999999999753222 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|++|+|... .++.++|+||+|. ++..|+.+|+.++...... ......+++.++++.+++.++.++
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~ 138 (269)
T PRK13648 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADY 138 (269)
T ss_pred CCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhC
Confidence 9999997532 1456999999984 4456899999875311000 000113456788899988765554
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 139 ---------~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 139 ---------EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM 207 (269)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh
Confidence 3679999999999999999999999999999999999999998887764 3789999999998764
No 195
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=254.29 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=142.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+. .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~~~~-~~--------~l~~~sl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 55 (251)
T PRK14251 4 IISAKDVHLSYGN-YE--------ALHGISLDFEEKELTALI--------GPSGCGKSTFLRC-------L----NRMND 55 (251)
T ss_pred eEEEEeeEEEECC-ee--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhccc
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 88886
Q ss_pred -----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 -----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 -----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
|++|+|... .++.++|++|++.++..|++||+.++.............+++.++++.+++..
T Consensus 56 ~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 135 (251)
T PRK14251 56 DIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK 135 (251)
T ss_pred cccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 478987421 14569999999988888999999875311100000011245667788888742
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
... +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|+|||+++.+.
T Consensus 136 ~~~-----~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 136 ETK-----DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred chH-----HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 110 0011236799999999999999999999999999999999999999998888753 789999999998754
No 196
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-33 Score=251.35 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=140.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 5 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 56 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQ--------ALHEVSLHINQGEIVTLI--------GANGAGKTTLLGT-------L----CGDPR 56 (237)
T ss_pred EEEEEeEEEeeCC-ce--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc-CCchhhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV-QLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~ 221 (298)
|++|+|... .++.++|+||++.++. .|+.+|+.++..... .....+.+.++++.+ ++.+..++
T Consensus 57 p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~ 133 (237)
T PRK11614 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE---RDQFQERIKWVYELFPRLHERRIQ 133 (237)
T ss_pred CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC---hhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999987521 1346999999998876 599999987531100 011123455566665 34433332
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+.
T Consensus 134 ---------~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 134 ---------RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred ---------chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 3678999999999999999999999999999999999999998887754 4899999999998543
No 197
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-34 Score=245.47 Aligned_cols=179 Identities=22% Similarity=0.208 Sum_probs=150.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++++.+++++|++-.. +++|+||+++.|++++|. |+| || ++|+ + ++++.
T Consensus 1 Ml~v~~l~K~y~~~v~--------AvrdVSF~ae~Gei~GlL--------G~NGAGKTT~LRm-------i----atlL~ 53 (245)
T COG4555 1 MLEVTDLTKSYGSKVQ--------AVRDVSFEAEEGEITGLL--------GENGAGKTTLLRM-------I----ATLLI 53 (245)
T ss_pred CeeeeehhhhccCHHh--------hhhheeEEeccceEEEEE--------cCCCCCchhHHHH-------H----HHhcc
Confidence 4788999999975333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 156 LFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|++|+++.. .|++||.++.+.-++ ..|++|||.|.....+.. .....+++.++.+.+++.+.+++.
T Consensus 54 P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~-~~~~kari~~l~k~l~l~~~~~rR-- 130 (245)
T COG4555 54 PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS-RKEIKARIAELSKRLQLLEYLDRR-- 130 (245)
T ss_pred CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhChHHHHHHH--
Confidence 999998632 378899999665565 579999999864333221 122356788999999998888774
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
..+||.||||||+|||||+++|++++|||||||||..+...+.+.+++ .|+++|++||.++.++
T Consensus 131 -------v~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eve 197 (245)
T COG4555 131 -------VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVE 197 (245)
T ss_pred -------HhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHH
Confidence 678999999999999999999999999999999999999888887654 5999999999998776
No 198
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=255.57 Aligned_cols=184 Identities=18% Similarity=0.188 Sum_probs=142.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+.
T Consensus 20 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 71 (268)
T PRK14248 20 HILEVKDLSIYYGE-KR--------AVNDISMDIEKHAVTALI--------GPSGCGKSTFLRS-------I----NRMN 71 (268)
T ss_pred ceEEEEEEEEEeCC-ce--------eeeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhcc
Confidence 46999999999963 33 899999999999999999 999 99 9999 7 8875
Q ss_pred c-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 P-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+ |++|+|... .++.++|+||++.++..|++||+.++............++.+.++++.+++.
T Consensus 72 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 151 (268)
T PRK14248 72 DLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW 151 (268)
T ss_pred cccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC
Confidence 4 688987421 1457999999998888899999986531100000001134466778888774
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~ 294 (298)
..+. +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++. +.|||++||+++.+
T Consensus 152 ~~~~-----~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 226 (268)
T PRK14248 152 DEVK-----DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQA 226 (268)
T ss_pred cchH-----HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHH
Confidence 2110 0011246799999999999999999999999999999999999999999888753 68999999999865
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 227 ~ 227 (268)
T PRK14248 227 L 227 (268)
T ss_pred H
Confidence 4
No 199
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.7e-33 Score=253.62 Aligned_cols=178 Identities=23% Similarity=0.234 Sum_probs=144.8
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 2 l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~ 53 (256)
T TIGR03873 2 LRLSRVSWSAGG-RL--------IVDGVDVTAPPGSLTGLL--------GPNGSGKSTLLRL-------L----AGALRP 53 (256)
T ss_pred ceEEeEEEEECC-EE--------EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC
Confidence 678999999963 33 999999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcch-hhhh--cCCCHHHHHHHHHHcCCchhhhh
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKE-DMIQ--KGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~-~~~~--~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
++|+|... .++.++|+||++.+ +..|++||+.++.... .... .....+++.++++.+++.+..++
T Consensus 54 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 133 (256)
T TIGR03873 54 DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR 133 (256)
T ss_pred CCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC
Confidence 99987531 13469999999864 4679999998753111 0000 01123467888999998766554
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
. +..||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+.
T Consensus 134 ~---------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 134 D---------MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred C---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3 679999999999999999999999999999999999999998888765 3789999999998774
No 200
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-33 Score=255.25 Aligned_cols=181 Identities=26% Similarity=0.265 Sum_probs=144.0
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.|+++.. +++|+||+|++|++++|+ ||| || |+++ + +|++
T Consensus 5 ~~l~~~~l~~~~~~~~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~ 57 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHT--------ALRDASFTVPGGSIAALV--------GVNGSGKSTLFKA-------L----MGFV 57 (272)
T ss_pred ceEEEEeEEEEecCCcE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 35899999999964444 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccC--------CCcEEEEcCcCCC---CCCCHHHHHccCCcch-hhhh-c-CCCHHHHHHHHHHcCCchhhh
Q psy11400 155 PLFGGTVTKPP--------RGKLFYVPQRPYM---TLGTLRDQVIYPHTKE-DMIQ-K-GITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 155 ~~~~G~i~~~~--------r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~l~~~~~ 220 (298)
+|++|+|.... +..++|+||++.+ +..++++|+.++.... .... . ....+.+.++++.+++.+..+
T Consensus 58 ~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 137 (272)
T PRK15056 58 RLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH 137 (272)
T ss_pred CCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc
Confidence 99999986321 2369999999864 3447888886542110 0000 0 112345677889999876655
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+ .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.
T Consensus 138 ~---------~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~ 206 (272)
T PRK15056 138 R---------QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVT 206 (272)
T ss_pred C---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4 3678999999999999999999999999999999999999999888764 3899999999998654
No 201
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=255.81 Aligned_cols=183 Identities=19% Similarity=0.171 Sum_probs=143.8
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+.+++++||++.|++ .. +|+|+||+|++||+++|+ |+| || |+++ + +|+
T Consensus 11 ~~~l~i~nl~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl 62 (269)
T PRK14259 11 NIIISLQNVTISYGT-FE--------AVKNVFCDIPRGKVTALI--------GPSGCGKSTVLRS-------L----NRM 62 (269)
T ss_pred CceEEEEeEEEEECC-EE--------EEcceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 457999999999963 33 899999999999999999 999 99 9999 8 888
Q ss_pred cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
++ |++|+|... .++.++|+||++.++..|++||+.+....... ....++.+.++++.+++
T Consensus 63 ~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l 140 (269)
T PRK14259 63 NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY--TGDMDELVERSLRKAAV 140 (269)
T ss_pred ccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCC--cHHHHHHHHHHHHHhCC
Confidence 76 588987521 13469999999988878999999875421100 01113456677888876
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
...+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .+.|+|++||+++.
T Consensus 141 ~~~l~~-----~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 215 (269)
T PRK14259 141 WDECKD-----KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ 215 (269)
T ss_pred cchhhh-----hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 421110 11224679999999999999999999999999999999999999999988875 36899999999986
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 216 ~~ 217 (269)
T PRK14259 216 AV 217 (269)
T ss_pred HH
Confidence 64
No 202
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-33 Score=236.44 Aligned_cols=184 Identities=26% Similarity=0.221 Sum_probs=148.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++++++..+++.- ...+|++++|.|++||.++|+ ||| || |+-+ + +|+-.
T Consensus 6 ii~~~~l~ktvg~~~~-----~l~IL~~V~L~v~~Ge~vaiV--------G~SGSGKSTLl~v-------l----AGLd~ 61 (228)
T COG4181 6 IIEVHHLSKTVGQGEG-----ELSILKGVELVVKRGETVAIV--------GPSGSGKSTLLAV-------L----AGLDD 61 (228)
T ss_pred eeehhhhhhhhcCCCc-----ceeEeecceEEecCCceEEEE--------cCCCCcHHhHHHH-------H----hcCCC
Confidence 5788888887765431 112999999999999999999 999 99 7777 7 99999
Q ss_pred cCCceeec---------------cCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTK---------------PPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~---------------~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|+|.. -..+++|||||...+ ++.|-.||+..|...... ......+...+.++.+|+.+-+
T Consensus 62 ~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCccccc
Confidence 99999853 125689999999865 678999999998643221 0112345578899999997644
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~ 295 (298)
.. ++.+|||||||||+|||||+..|++||.||||.+||..+-+++.+++ ++.|.|+|+||||+.++.
T Consensus 141 ~H---------yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~ 211 (228)
T COG4181 141 TH---------YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211 (228)
T ss_pred cc---------CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH
Confidence 33 47899999999999999999999999999999999999888877664 456999999999998876
Q ss_pred hc
Q psy11400 296 HH 297 (298)
Q Consensus 296 ~~ 297 (298)
..
T Consensus 212 Rc 213 (228)
T COG4181 212 RC 213 (228)
T ss_pred hh
Confidence 43
No 203
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=255.11 Aligned_cols=180 Identities=19% Similarity=0.176 Sum_probs=146.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.|++ .. +++|+||++++|++++|+ |+| || |+++ + +|++
T Consensus 6 ~~l~i~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~ 57 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YT--------VAENLTVEIPDGHFTAII--------GPNGCGKSTLLRT-------L----SRLM 57 (265)
T ss_pred cEEEEEEEEEEECC-EE--------EeeecceEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence 46899999999963 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hhh--hcCCCHHHHHHHHHHcCCchhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DMI--QKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~--~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
+|++|+|... .++.++|+||++.++ ..|++||+.++.... ... ......+.+.++++.+++.+..
T Consensus 58 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (265)
T PRK10253 58 TPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA 137 (265)
T ss_pred CCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence 9999998532 134699999999876 469999998653111 000 0011234577889999997665
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++. +.+||||||||++||||++.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+.
T Consensus 138 ~~~---------~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 138 DQS---------VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred cCC---------cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 543 679999999999999999999999999999999999999998887754 3789999999998653
No 204
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-33 Score=242.41 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=143.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+. .. ++ ++||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 1 ~l~~~~l~~~~~~-~~--------l~-~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~ 51 (195)
T PRK13541 1 MLSLHQLQFNIEQ-KN--------LF-DLSITFLPSAITYIK--------GANGCGKSSLLRM-------I----AGIMQ 51 (195)
T ss_pred CeEEEEeeEEECC-cE--------EE-EEEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 3789999999953 22 45 599999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC-------CCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 156 LFGGTVTKPP-------RGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 156 ~~~G~i~~~~-------r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
|++|++.... ++.++|++|++.+ +..|++||+.+.... . ...+.+.++++.+++.+..+++
T Consensus 52 ~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~-----~-~~~~~~~~~l~~~~l~~~~~~~----- 120 (195)
T PRK13541 52 PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI-----Y-NSAETLYAAIHYFKLHDLLDEK----- 120 (195)
T ss_pred CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh-----c-ccHHHHHHHHHHcCCHhhhccC-----
Confidence 9999986422 2458999998855 568999999874311 1 1245677888998887655543
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~ 297 (298)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.++..
T Consensus 121 ----~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 121 ----CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence 679999999999999999999999999999999999999999887753 589999999999877643
No 205
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=251.96 Aligned_cols=183 Identities=21% Similarity=0.174 Sum_probs=141.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~ 54 (250)
T PRK14240 3 KISVKDLDLFYGD-FQ--------ALKKINLDIEENQVTALI--------GPSGCGKSTFLRT-------L----NRMND 54 (250)
T ss_pred eEEEEEEEEEECC-ce--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 88765
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
+ ++|+|... .++.++|+||++.++..|+++|+.+..............+.+.++++.+++.+
T Consensus 55 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14240 55 LIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD 134 (250)
T ss_pred ccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch
Confidence 2 68987521 14569999999988778999999874211000000012345667788887743
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+.
T Consensus 135 ~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14240 135 EVKD-----RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQAS 209 (250)
T ss_pred hhHH-----HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 2110 01123679999999999999999999999999999999999999999888765 3789999999998654
No 206
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.4e-33 Score=255.68 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=143.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+|+++||++.|+......+....++++|+||+|++|++++|+ ||| || |+++ + +|++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~--------G~NGsGKSTLl~~-------l----~Gl~ 63 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAII--------GENGSGKSTLAKM-------L----AGMI 63 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEE--------cCCCCCHHHHHHH-------H----hCCC
Confidence 3689999999995210000000002999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhh
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YIL 219 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~ 219 (298)
+|++|+|... .++.++|+||++. ++ ..|+.+++.++.............+++.++++.+++. ...
T Consensus 64 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 143 (267)
T PRK15112 64 EPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA 143 (267)
T ss_pred CCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH
Confidence 9999997531 1246999999984 33 3488898865321100000011234677889999984 444
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++ .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|||++||+++.+.
T Consensus 144 ~~---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 144 SY---------YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred hc---------CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 33 2578999999999999999999999999999999999999988887765 3889999999998775
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 215 ~ 215 (267)
T PRK15112 215 H 215 (267)
T ss_pred H
Confidence 3
No 207
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=240.75 Aligned_cols=176 Identities=20% Similarity=0.241 Sum_probs=143.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+..+|+.++|.. +. +++++||++++||++++. ||| || .|.+ + .|+.+
T Consensus 4 ~L~a~~l~K~y~k-r~--------Vv~~Vsl~v~~GEiVGLL--------GPNGAGKTT~Fym-------i----~Glv~ 55 (243)
T COG1137 4 TLVAENLAKSYKK-RK--------VVNDVSLEVNSGEIVGLL--------GPNGAGKTTTFYM-------I----VGLVR 55 (243)
T ss_pred EEEehhhhHhhCC-ee--------eeeeeeEEEcCCcEEEEE--------CCCCCCceeEEEE-------E----EEEEe
Confidence 4788999999953 33 999999999999999999 999 99 8888 7 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|+|... .|..|||+||+|.+|. .||.|||..-....+.. .......+++++++.+++.++.+.
T Consensus 56 ~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~ 135 (243)
T COG1137 56 PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS 135 (243)
T ss_pred cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC
Confidence 999998531 2556999999999996 59999997543211100 011223457799999999988877
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH---HHHhcCcEEEEEecCcc
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE---YCREVGITLFTVSHRKS 292 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~---~l~~~~~TiIiitH~l~ 292 (298)
+ +.+||||||+|+.|||||+.+|++++||||++|+||.+...|.+ .+++.|..|+++-|+..
T Consensus 136 ~---------a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 136 K---------AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred c---------ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 5 67999999999999999999999999999999999976665554 55667999999999864
No 208
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=263.09 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=142.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++++ |+++.|.+ . .+ |+||+|++||+++|+ ||| || |+++ + +|+++
T Consensus 1 ~l~~-~l~k~~~~--~--------~~-~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----aGl~~ 49 (352)
T PRK11144 1 MLEL-NFKQQLGD--L--------CL-TVNLTLPAQGITAIF--------GRSGAGKTSLINA-------I----SGLTR 49 (352)
T ss_pred CeEE-EEEEEeCC--E--------EE-EEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3667 89999952 2 33 899999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|+|... .+++++|+||++.+|+ .|++||+.++.. ....+++.++++.+++.++.
T Consensus 50 p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~ 122 (352)
T PRK11144 50 PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLL 122 (352)
T ss_pred CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhh
Confidence 999987521 1457999999998875 699999988642 12345688899999998766
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++. +.+||||||||++|||||+.+|+++||||||++||+..+..+.+.+++ .++|+|+|||+++.+.
T Consensus 123 ~~~---------~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~ 193 (352)
T PRK11144 123 DRY---------PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEIL 193 (352)
T ss_pred hCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 653 679999999999999999999999999999999999999988887764 3799999999998654
No 209
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=251.25 Aligned_cols=184 Identities=19% Similarity=0.164 Sum_probs=142.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~~~~-~~--------il~~~s~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 55 (251)
T PRK14249 4 KIKIRGVNFFYHK-HQ--------VLKNINMDFPERQITAII--------GPSGCGKSTLLRA-------L----NRMND 55 (251)
T ss_pred eEEEEEEEEEECC-ee--------EecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccC
Confidence 5889999999963 33 899999999999999999 999 99 9999 8 89988
Q ss_pred cC-----Cceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 LF-----GGTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~~-----~G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
|+ +|+|.. ..++.++|+||++.+++.|++||+.++............++.+.++++.+++.+
T Consensus 56 ~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 135 (251)
T PRK14249 56 IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD 135 (251)
T ss_pred ccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch
Confidence 86 588642 124579999999988888999999875321000000011234566677777653
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .++|+|++||+++.+.
T Consensus 136 ~l~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~ 210 (251)
T PRK14249 136 EVKD-----NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAA 210 (251)
T ss_pred hhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2211 01224679999999999999999999999999999999999999998888765 3789999999998765
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 211 ~ 211 (251)
T PRK14249 211 R 211 (251)
T ss_pred h
Confidence 3
No 210
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=254.28 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=142.7
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +|+|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 11 ~~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~ 62 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQ--------ALKNVSMQIPKNSVTALI--------GPSGCGKSTFIRC-------L----NRMN 62 (258)
T ss_pred eeEEEeeeEEEeCC-ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 46999999999953 33 899999999999999999 999 99 9999 8 8888
Q ss_pred cc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 PL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+| ++|+|... .++.++|+||++.++..|++||+.++...... ......+.+.++++.+++.
T Consensus 63 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK14268 63 DLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGA-NKKDLDGVVENALRSAALW 141 (258)
T ss_pred CcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCC
Confidence 74 78987421 14569999999988779999999864211000 0001123567788888874
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~ 294 (298)
..... .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+
T Consensus 142 ~~~~~-----~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~ 216 (258)
T PRK14268 142 DETSD-----RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA 216 (258)
T ss_pred cchhh-----hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH
Confidence 22110 01123679999999999999999999999999999999999999999888765 378999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 217 ~ 217 (258)
T PRK14268 217 A 217 (258)
T ss_pred H
Confidence 4
No 211
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=254.70 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=144.5
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
..+++++|+++.|++ .. +|+|+||++++||+++|+ |+| || |+++ + +|+
T Consensus 18 ~~~l~~~nl~~~~~~-~~--------il~~vsl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl 69 (267)
T PRK14237 18 EIALSTKDLHVYYGK-KE--------AIKGIDMQFEKNKITALI--------GPSGSGKSTYLRS-------L----NRM 69 (267)
T ss_pred CeEEEEeeEEEEECC-ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhc
Confidence 357999999999953 33 899999999999999999 999 99 9999 8 888
Q ss_pred cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
++ |++|+|... .++.|+|+||++.++..|++||+.++............++++.++++.+++
T Consensus 70 ~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l 149 (267)
T PRK14237 70 NDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL 149 (267)
T ss_pred cCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 86 478987421 145699999999888789999998753210000000123456777888888
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
.+.+.. .....+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.
T Consensus 150 ~~~i~~-----~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 224 (267)
T PRK14237 150 WDQVKD-----DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224 (267)
T ss_pred Cchhhh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 532211 11124679999999999999999999999999999999999999999888765 36899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 225 ~~ 226 (267)
T PRK14237 225 AA 226 (267)
T ss_pred HH
Confidence 63
No 212
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=252.16 Aligned_cols=183 Identities=19% Similarity=0.193 Sum_probs=141.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc-
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW- 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~- 154 (298)
+++++||++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + .|+.
T Consensus 5 ~l~~~~l~~~~~~-~~--------~l~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (252)
T PRK14239 5 ILQVSDLSVYYNK-KK--------ALNSVSLDFYPNEITALI--------GPSGSGKSTLLRS-------I----NRMND 56 (252)
T ss_pred eEEEEeeEEEECC-ee--------eeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence 6899999999963 33 899999999999999999 999 99 9999 7 8874
Q ss_pred -cc---CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 155 -PL---FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 155 -~~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
+| ++|+|... .++.++|+||++.++..|++||+.++............++++.++++.+++..
T Consensus 57 ~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (252)
T PRK14239 57 LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD 136 (252)
T ss_pred cCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch
Confidence 35 48887421 14569999999988889999999864211000000111345667788888743
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .++|+|++||+++.+.
T Consensus 137 ~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 211 (252)
T PRK14239 137 EVKD-----RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211 (252)
T ss_pred hHHH-----HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHH
Confidence 2110 01124679999999999999999999999999999999999999999988875 3689999999998654
No 213
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=252.16 Aligned_cols=183 Identities=18% Similarity=0.205 Sum_probs=141.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-- 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-- 153 (298)
+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+
T Consensus 3 ~l~~~~~~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~~ 54 (250)
T PRK14245 3 KIDARDVNFWYGD-FH--------ALKGISMEIEEKSVVAFI--------GPSGCGKSTFLRL-------F----NRMND 54 (250)
T ss_pred EEEEEEEEEEECC-Ee--------EEeeeeEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hhhhc
Confidence 5899999999963 33 899999999999999999 999 99 9999 7 775
Q ss_pred -ccc--CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 154 -WPL--FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 154 -~~~--~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
.+| ++|+|... .++.++|+||++.++..|+.||+.++.............+.+.++++.+++.+
T Consensus 55 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14245 55 LIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWD 134 (250)
T ss_pred ccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc
Confidence 354 48887421 13469999999988878999999864211000000012345678888888854
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|||++||+++.+.
T Consensus 135 ~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~ 209 (250)
T PRK14245 135 EVKD-----KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAA 209 (250)
T ss_pred chhh-----hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 2211 01123679999999999999999999999999999999999999999988875 3789999999998764
No 214
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-33 Score=267.66 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=135.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------------
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------------- 164 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------------- 164 (298)
+++|+||+|++||+++|+ ||| || |+++ + .|+++|++|+|...
T Consensus 43 ~L~~isl~i~~Gei~~Lv--------G~NGsGKSTLLr~-------I----~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~ 103 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIM--------GLSGSGKSTMVRL-------L----NRLIEPTRGQVLIDGVDIAKISDAELREV 103 (400)
T ss_pred EEEeEEEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----HcCCCCCCCEEEECCEECCcCCHHHHHHH
Confidence 799999999999999999 999 99 9999 8 99999999998531
Q ss_pred CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400 165 PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV 243 (298)
Q Consensus 165 ~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl 243 (298)
.+++++|+||++.+|. .|++||+.++...... ......+++.++++.+++.++.++. +.+||||||||+
T Consensus 104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~-~~~~~~~~~~e~L~~~gL~~~~~~~---------~~~LSgGq~QRv 173 (400)
T PRK10070 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSY---------PDELSGGMRQRV 173 (400)
T ss_pred HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhcC---------cccCCHHHHHHH
Confidence 1247999999998875 6999999875321100 0011235677889999998766553 679999999999
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+|||||+.+|++|||||||++||+.++..+.+.+++ .++|+|++||+++.+.
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~ 229 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM 229 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 999999999999999999999999999998887754 4899999999998764
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=251.23 Aligned_cols=184 Identities=19% Similarity=0.181 Sum_probs=142.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|++
T Consensus 3 ~~l~~~nl~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 54 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NH--------AVKDVSMDFPENSVTAII--------GPSGCGKSTVLRS-------I----NRMH 54 (252)
T ss_pred cEEEEEEEEEEeCC-ee--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhcc
Confidence 46899999999963 33 899999999999999999 999 99 9999 8 8887
Q ss_pred c--c---CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 155 P--L---FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 155 ~--~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
+ | ++|+|... .++.++|+||++.++. .|++||+.++............++.+.++++.+++
T Consensus 55 ~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14256 55 DLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVAL 134 (252)
T ss_pred cCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 5 3 58886421 1456999999998876 69999997643110000001113456778888888
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~ 293 (298)
...... .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.
T Consensus 135 ~~~~~~-----~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 209 (252)
T PRK14256 135 WDEVKD-----RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209 (252)
T ss_pred chhhhH-----HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence 542211 011236799999999999999999999999999999999999999998887753 6899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 210 ~~ 211 (252)
T PRK14256 210 AA 211 (252)
T ss_pred HH
Confidence 64
No 216
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=255.41 Aligned_cols=184 Identities=20% Similarity=0.193 Sum_probs=140.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|++
T Consensus 23 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------i----~Gl~ 74 (271)
T PRK14238 23 VVFDTQNLNLWYGE-DH--------ALKNINLDIHENEVTAII--------GPSGCGKSTYIKT-------L----NRMV 74 (271)
T ss_pred eEEEEeeeEEEECC-cc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhc
Confidence 47999999999963 33 899999999999999999 999 99 9999 8 8887
Q ss_pred c-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 P-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+ |++|+|... .++.++|+||++.++..|++||+.++.............+.+.++++.+++.
T Consensus 75 ~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (271)
T PRK14238 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW 154 (271)
T ss_pred cCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc
Confidence 6 688987421 1456999999998888899999986421100000000123345666666543
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~ 294 (298)
+.+. +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++. ++|+|++||+++.+
T Consensus 155 ~~l~-----~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i 229 (271)
T PRK14238 155 DELK-----DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA 229 (271)
T ss_pred chHH-----HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH
Confidence 2111 0112246799999999999999999999999999999999999999999887653 78999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 230 ~ 230 (271)
T PRK14238 230 A 230 (271)
T ss_pred H
Confidence 4
No 217
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.2e-33 Score=250.62 Aligned_cols=179 Identities=19% Similarity=0.151 Sum_probs=140.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW-- 154 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~-- 154 (298)
++++|+++.|++ .. +++|+||+|++||+++|+ ||| || |+++ + +|+.
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~ 52 (243)
T TIGR01978 1 LKIKDLHVSVED-KE--------ILKGVNLTVKKGEIHAIM--------GPNGSGKSTLSKT-------I----AGHPSY 52 (243)
T ss_pred CeEeeEEEEECC-EE--------EEeccceEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 8884
Q ss_pred ccCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhh------hhcCCCHHHHHHHHHHcCC
Q psy11400 155 PLFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDM------IQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~------~~~~~~~~~i~~~l~~~~l 215 (298)
+|++|+|... .+..++|+||++.++. .|+.+|+.+....... .......+++.++++.+++
T Consensus 53 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 132 (243)
T TIGR01978 53 EVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132 (243)
T ss_pred CCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC
Confidence 7899998531 1234899999998775 5999998764211000 0000012456788888888
Q ss_pred c-hhhhhcCCcccccccCC-CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11400 216 G-YILNREKGWDTVADWID-VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR 290 (298)
Q Consensus 216 ~-~~~~~~~g~d~~~~~~~-~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~ 290 (298)
. ...+++ +. .||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+
T Consensus 133 ~~~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 133 DEEFLNRS---------VNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203 (243)
T ss_pred chhhcccc---------cccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence 6 343332 44 5999999999999999999999999999999999999999988765 37899999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
++.+..
T Consensus 204 ~~~~~~ 209 (243)
T TIGR01978 204 QRLLNY 209 (243)
T ss_pred HHHHHh
Confidence 997753
No 218
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=251.32 Aligned_cols=183 Identities=19% Similarity=0.167 Sum_probs=143.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~ 54 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VE--------VLDGVNLEIPDNTITALM--------GPSGSGKSTLLRV-------F----NRLIE 54 (250)
T ss_pred eEEEEeeEEEECC-ee--------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 4889999999963 33 899999999999999999 999 99 9999 8 89887
Q ss_pred c-----CCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~ 217 (298)
| ++|+|... .++.|+|+||++.++ ..|+.||+.++....... ......+.+.++++.+++.+
T Consensus 55 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14247 55 LYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD 134 (250)
T ss_pred CCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc
Confidence 4 68987421 245799999999754 579999998753211000 00111345778889998854
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 135 ~~~~-----~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14247 135 EVKD-----RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA 209 (250)
T ss_pred chhh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2210 01123679999999999999999999999999999999999999999988875 3789999999998764
No 219
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.1e-33 Score=252.07 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=143.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||++++||+++|+ |+| || |+++ | +|+++
T Consensus 4 ~l~~~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~ 55 (262)
T PRK09984 4 IIRVEKLAKTFNQ-HQ--------ALHAVDLNIHHGEMVALL--------GPSGSGKSTLLRH-------L----SGLIT 55 (262)
T ss_pred EEEEeeEEEEeCC-eE--------EEecceEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 6899999999963 33 899999999999999999 999 99 9999 8 99998
Q ss_pred cC---Cceeecc----------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-h------hhcCCCHHHHHH
Q psy11400 156 LF---GGTVTKP----------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-M------IQKGITDADLTE 208 (298)
Q Consensus 156 ~~---~G~i~~~----------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-~------~~~~~~~~~i~~ 208 (298)
|+ +|+|... .++.++|+||++.++. .|+.+|+.++..... . ........++.+
T Consensus 56 p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (262)
T PRK09984 56 GDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ 135 (262)
T ss_pred CCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHH
Confidence 76 4876421 1346999999998766 699999987531100 0 000112346788
Q ss_pred HHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEE
Q psy11400 209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITL 284 (298)
Q Consensus 209 ~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~Ti 284 (298)
+++.+++.+..++. +.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|+|+
T Consensus 136 ~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv 206 (262)
T PRK09984 136 ALTRVGMVHFAHQR---------VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206 (262)
T ss_pred HHHHcCCHHHHhCC---------ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 99999997665553 678999999999999999999999999999999999999988888764 37999
Q ss_pred EEEecCcchhh
Q psy11400 285 FTVSHRKSLWT 295 (298)
Q Consensus 285 IiitH~l~~~~ 295 (298)
|++||+++.+.
T Consensus 207 ii~tH~~~~~~ 217 (262)
T PRK09984 207 VVTLHQVDYAL 217 (262)
T ss_pred EEEeCCHHHHH
Confidence 99999998653
No 220
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-33 Score=254.92 Aligned_cols=184 Identities=19% Similarity=0.206 Sum_probs=145.4
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
...++++|+++.|++ .. +|+|+||+|++|++++|+ |+| || |+++ + +|+
T Consensus 37 ~~~l~i~~l~~~~~~-~~--------il~~is~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl 88 (285)
T PRK14254 37 ETVIEARDLNVFYGD-EQ--------ALDDVSMDIPENQVTAMI--------GPSGCGKSTFLRC-------I----NRM 88 (285)
T ss_pred CceEEEEEEEEEECC-Ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 457999999999963 33 899999999999999999 999 99 9999 8 898
Q ss_pred cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
++ |++|+|... .++.++|+||++.++..|+.||+.++...... .....+++.++++.+++
T Consensus 89 ~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l 166 (285)
T PRK14254 89 NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY--DGDIDERVEESLRRAAL 166 (285)
T ss_pred CCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC--cHHHHHHHHHHHHHcCC
Confidence 86 588987421 14579999999988878999999864211000 01123467788888888
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~ 293 (298)
...+.. .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++. +.|+|++||+++.
T Consensus 167 ~~~i~~-----~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~ 241 (285)
T PRK14254 167 WDEVKD-----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ 241 (285)
T ss_pred CchhHH-----HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 532110 011236799999999999999999999999999999999999999999888763 5899999999987
Q ss_pred hhh
Q psy11400 294 WTH 296 (298)
Q Consensus 294 ~~~ 296 (298)
+..
T Consensus 242 i~~ 244 (285)
T PRK14254 242 AAR 244 (285)
T ss_pred HHh
Confidence 653
No 221
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.7e-33 Score=271.22 Aligned_cols=191 Identities=27% Similarity=0.294 Sum_probs=152.5
Q ss_pred CCcEEEeeeeEecCCCCCCCCC--CcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDS--RWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~--~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
+..++++|+++.|...+.-++. ...++++||||++++||+++|| |+| || |.|+ + .
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglV--------GeSGsGKSTlar~-------i----~ 338 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLV--------GESGSGKSTLARI-------L----A 338 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence 3467899999999742200001 1224899999999999999999 999 99 9999 8 9
Q ss_pred cccccCCceeecc-------------CCCcEEEEcCcCCC---CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 152 QLWPLFGGTVTKP-------------PRGKLFYVPQRPYM---TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 152 ~l~~~~~G~i~~~-------------~r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
|+.+|++|.|... .++++-+|||+|+. +..||.+++..+.............+++.++++.++|
T Consensus 339 gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL 418 (539)
T COG1123 339 GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL 418 (539)
T ss_pred CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCC
Confidence 9999999998531 24679999999974 3479999998775422111111223568889999999
Q ss_pred ch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400 216 GY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR 290 (298)
Q Consensus 216 ~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~ 290 (298)
.. ++++ ++++||||||||+||||||+.+|+++|+|||||+||+.+...+.+++++ .|.|.|+||||
T Consensus 419 ~~~~l~r---------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 419 PPEFLDR---------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred CHHHHhc---------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 75 5555 4789999999999999999999999999999999999999998888764 59999999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
++.+++
T Consensus 490 l~vV~~ 495 (539)
T COG1123 490 LAVVRY 495 (539)
T ss_pred HHHHHh
Confidence 998875
No 222
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.7e-33 Score=247.46 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=139.3
Q ss_pred cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.+.|+||++.|+... .+ +++|+||+|++||+++|+ ||| || |+++ + .|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLlk~-------l----~G~ 56 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYAR-------ILNDVSLHVESGQVMAIL--------GSSGSGKTTLLDA-------I----SGR 56 (226)
T ss_pred cceeecceeeeecCccccc-------cccCceEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCc
Confidence 367999999997542 22 999999999999999999 999 99 9999 8 899
Q ss_pred cc---cCCceeecc--------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchh--hhhcCCCHHHHHH-HHHHcCCchh
Q psy11400 154 WP---LFGGTVTKP--------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKED--MIQKGITDADLTE-YLQKVQLGYI 218 (298)
Q Consensus 154 ~~---~~~G~i~~~--------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~~i~~-~l~~~~l~~~ 218 (298)
++ |++|+|... .++.++|+||++.++.. |++||+.++..... ..........+.+ .++.+++.+.
T Consensus 57 ~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 136 (226)
T cd03234 57 VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI 136 (226)
T ss_pred cCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhh
Confidence 88 899987531 35679999999988765 99999986421100 0000001122334 6777776654
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK 291 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l 291 (298)
.++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||++
T Consensus 137 ~~~---------~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 137 GGN---------LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred hcc---------cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 443 3679999999999999999999999999999999999999999888764 378999999998
No 223
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.7e-33 Score=251.72 Aligned_cols=179 Identities=21% Similarity=0.237 Sum_probs=141.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 6 ~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 57 (258)
T PRK11701 6 LLSVRGLTKLYGP-RK--------GCRDVSFDLYPGEVLGIV--------GESGSGKTTLLNA-------L----SARLA 57 (258)
T ss_pred eEEEeeeEEEcCC-ce--------eeeeeeEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6899999999964 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC--------------------CCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400 156 LFGGTVTKPP--------------------RGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212 (298)
Q Consensus 156 ~~~G~i~~~~--------------------r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 212 (298)
|++|+|.... ++.++|+||++. ++ ..|+.+|+.++...............+.++++.
T Consensus 58 p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (258)
T PRK11701 58 PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLER 137 (258)
T ss_pred CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999874211 235999999984 33 358888886532100000001113456778888
Q ss_pred cCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 213 VQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 213 ~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
+++.+ ..++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|++
T Consensus 138 ~~l~~~~~~~---------~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~i 208 (258)
T PRK11701 138 VEIDAARIDD---------LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV 208 (258)
T ss_pred cCCChhHHhC---------CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 88863 4443 3689999999999999999999999999999999999999998887654 38899999
Q ss_pred ecCcchhh
Q psy11400 288 SHRKSLWT 295 (298)
Q Consensus 288 tH~l~~~~ 295 (298)
||+++.+.
T Consensus 209 sH~~~~~~ 216 (258)
T PRK11701 209 THDLAVAR 216 (258)
T ss_pred eCCHHHHH
Confidence 99998775
No 224
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.8e-33 Score=236.60 Aligned_cols=143 Identities=23% Similarity=0.340 Sum_probs=125.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+..... +++|+||++++||+++|+ ||| || |+++ + +|+.+|
T Consensus 1 i~~~~l~~~~~~~~~~-------~l~~~~~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~ 54 (173)
T cd03246 1 LEVENVSFRYPGAEPP-------VLRNVSFSIEPGESLAII--------GPSGSGKSTLARL-------I----LGLLRP 54 (173)
T ss_pred CEEEEEEEEcCCCCCc-------ceeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCC
Confidence 4689999999743322 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|+|... .+++++|++|++.++..|++||+
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l-------------------------------------- 96 (173)
T cd03246 55 TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-------------------------------------- 96 (173)
T ss_pred CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC--------------------------------------
Confidence 99997532 14579999999987777888876
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+..
T Consensus 97 ---------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 97 ---------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred ---------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 899999999999999999999999999999999999999888764 37899999999987653
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=250.81 Aligned_cols=183 Identities=21% Similarity=0.181 Sum_probs=142.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+.+
T Consensus 4 ~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 55 (251)
T PRK14270 4 KMESKNLNLWYGE-KQ--------ALNDINLPIYENKITALI--------GPSGCGKSTFLRC-------L----NRMND 55 (251)
T ss_pred EEEEEEeEEEECC-ee--------eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 88876
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
| ++|+|... .++.++|+||++.++..|++||+.++.............+++.++++.+++.+
T Consensus 56 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 135 (251)
T PRK14270 56 LISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD 135 (251)
T ss_pred cccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch
Confidence 5 78987521 14569999999988889999999865311100000011245667888888743
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+.
T Consensus 136 ~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~ 210 (251)
T PRK14270 136 EVKD-----DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQAS 210 (251)
T ss_pred hhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHH
Confidence 2110 011236799999999999999999999999999999999999999998887753 689999999998754
No 226
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=252.41 Aligned_cols=184 Identities=19% Similarity=0.163 Sum_probs=142.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|+. .. +++|+||+|++||+++|+ |+| || |+++ + +|+.
T Consensus 11 ~~l~i~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~ 62 (259)
T PRK14274 11 EVYQINGMNLWYGQ-HH--------ALKNINLSIPENEVTAII--------GPSGCGKSTFIKT-------L----NLMI 62 (259)
T ss_pred ceEEEeeEEEEECC-ee--------eEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhc
Confidence 46999999999963 33 899999999999999999 999 99 9999 8 8887
Q ss_pred c--c---CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 P--L---FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~--~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+ | ++|+|... .++.++|+||++.++..|++||+.+..............+++.++++.+++.
T Consensus 63 ~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 142 (259)
T PRK14274 63 QMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALW 142 (259)
T ss_pred cCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 6 3 58887421 1356999999998887899999986421100000001123466778888875
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~ 294 (298)
+.... .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+
T Consensus 143 ~~~~~-----~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 217 (259)
T PRK14274 143 DEVKD-----RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA 217 (259)
T ss_pred hhhhh-----hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 32110 011246799999999999999999999999999999999999999998887763 78999999999875
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 218 ~ 218 (259)
T PRK14274 218 A 218 (259)
T ss_pred H
Confidence 4
No 227
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=249.81 Aligned_cols=184 Identities=21% Similarity=0.199 Sum_probs=142.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 54 (249)
T PRK14253 3 KFNIENLDLFYGE-NQ--------ALKSINLPIPARQVTALI--------GPSGCGKSTLLRC-------L----NRMND 54 (249)
T ss_pred eEEEeccEEEECC-ee--------eeecceEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhcc
Confidence 4889999999963 33 899999999999999999 999 99 9999 8 88887
Q ss_pred c-----CCceeecc------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 156 L-----FGGTVTKP------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 156 ~-----~~G~i~~~------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
| ++|++... .++.++|+||++.++..|+.||+.+..............+++.++++.+++.+.
T Consensus 55 ~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (249)
T PRK14253 55 LIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134 (249)
T ss_pred cccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh
Confidence 5 58886421 135699999999888899999998753111000000112345667777877532
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++. +.|+|++||+++.+..
T Consensus 135 ~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 209 (249)
T PRK14253 135 VKD-----RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARR 209 (249)
T ss_pred hhH-----HhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH
Confidence 210 011236799999999999999999999999999999999999999998887753 6899999999987653
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.7e-33 Score=237.25 Aligned_cols=146 Identities=22% Similarity=0.256 Sum_probs=127.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+....+ +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 i~~~~~~~~~~~~~~~-------~l~~i~~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~ 54 (178)
T cd03247 1 LSINNVSFSYPEQEQQ-------VLKNLSLELKQGEKIALL--------GRSGSGKSTLLQL-------L----TGDLKP 54 (178)
T ss_pred CEEEEEEEEeCCCCcc-------ceEEEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCC
Confidence 4689999999653222 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++..|++||+
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i--------------------------------------- 95 (178)
T cd03247 55 QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL--------------------------------------- 95 (178)
T ss_pred CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh---------------------------------------
Confidence 99998532 14569999999988777888876
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..
T Consensus 96 -----~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 96 -----GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 147999999999999999999999999999999999999999988875 37899999999987753
No 229
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=250.13 Aligned_cols=183 Identities=20% Similarity=0.149 Sum_probs=142.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~~ 54 (250)
T PRK14262 3 IIEIENFSAYYGE-KK--------AVKNVTMKIFKNQITAII--------GPSGCGKTTLLRS-------I----NRMND 54 (250)
T ss_pred eEEEEeeEEEeCC-ce--------eEeeeeEeecCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 88887
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
| ++|+|... .++.++|+||++.++..|++||+.++............++.+.++++.+++..
T Consensus 55 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14262 55 HIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134 (250)
T ss_pred CCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc
Confidence 3 78987521 14579999999988889999999864211000000012334667788888754
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 135 ~~~~-----~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 135 EVKS-----ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred hhHH-----HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 2211 01124679999999999999999999999999999999999999999888765 3789999999998653
No 230
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-33 Score=261.15 Aligned_cols=186 Identities=19% Similarity=0.163 Sum_probs=140.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|+.... +.++|+|+||+|++||+++|+ |+| || |+++ + .|+++
T Consensus 3 ~L~v~~l~~~~~~~~~-----~~~~l~~vsl~i~~Ge~~~lv--------G~sGsGKSTL~~~-------l----~Gll~ 58 (326)
T PRK11022 3 LLNVDKLSVHFGDESA-----PFRAVDRISYSVKQGEVVGIV--------GESGSGKSVSSLA-------I----MGLID 58 (326)
T ss_pred eEEEeCeEEEECCCCc-----cEEEEeeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCC
Confidence 4899999999964320 012999999999999999999 999 99 8898 7 88886
Q ss_pred ----cCCceeecc---------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400 156 ----LFGGTVTKP---------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213 (298)
Q Consensus 156 ----~~~G~i~~~---------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 213 (298)
+++|+|... .++.|+||||+|. +. ..|+.+++..+.............+++.++++.+
T Consensus 59 ~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~ 138 (326)
T PRK11022 59 YPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV 138 (326)
T ss_pred CCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence 378887421 1246999999984 33 3588777654321100000111235678899999
Q ss_pred CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH 289 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH 289 (298)
++.+.... ...++.+|||||||||+|||||+.+|++||+||||++||+.++..+++++++ .|.|+|+|||
T Consensus 139 gL~~~~~~------l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTH 212 (326)
T PRK11022 139 GIPDPASR------LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212 (326)
T ss_pred CCCChHHH------HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99642211 1124789999999999999999999999999999999999999998887654 4899999999
Q ss_pred Ccchhh
Q psy11400 290 RKSLWT 295 (298)
Q Consensus 290 ~l~~~~ 295 (298)
+++.+.
T Consensus 213 dl~~~~ 218 (326)
T PRK11022 213 DLALVA 218 (326)
T ss_pred CHHHHH
Confidence 999875
No 231
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.3e-33 Score=249.07 Aligned_cols=177 Identities=25% Similarity=0.240 Sum_probs=144.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|++++|++ .. +++|+||++.+||+++|+ |+| || |+++ + +|+++|
T Consensus 1 i~i~~l~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~~ 52 (237)
T TIGR00968 1 IEIANISKRFGS-FQ--------ALDDVNLEVPTGSLVALL--------GPSGSGKSTLLRI-------I----AGLEQP 52 (237)
T ss_pred CEEEEEEEEECC-ee--------eeeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|++... .++.++|+||++.++. .|+.||+.+....... ......+.+.++++.+++.++.++.
T Consensus 53 ~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---- 127 (237)
T TIGR00968 53 DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH-PKAKIKARVEELLELVQLEGLGDRY---- 127 (237)
T ss_pred CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCC----
Confidence 99997531 2457999999998876 5999999864321100 0011234567888988887665543
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~ 295 (298)
+.+||+||+||++|||||+++|+++||||||++||+.+++.+.+.+++ . ++|+|++||+++.+.
T Consensus 128 -----~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 128 -----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAM 195 (237)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 578999999999999999999999999999999999999999888765 2 799999999998753
No 232
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.5e-33 Score=259.91 Aligned_cols=163 Identities=23% Similarity=0.300 Sum_probs=134.8
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc----------CCCcE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----------PRGKL 169 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----------~r~~i 169 (298)
+|+|+||+|++|++++|+ ||| || |+++ + .|+++|++|+|... .++++
T Consensus 8 ~l~~vs~~i~~Ge~~~l~--------G~NGaGKSTLl~~-------l----~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 68 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFL--------GPNGAGKTTTIRM-------L----TTLLRPTSGTARVAGYDVVREPRKVRRSI 68 (302)
T ss_pred EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceEEEECCEEcccCHHHHHhhc
Confidence 899999999999999999 999 99 9999 8 99999999998532 14569
Q ss_pred EEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400 170 FYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 170 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa 248 (298)
+|+||++.++. .|++||+.+....... ......+++.++++.+++.+..+++ +.+||||||||++||||
T Consensus 69 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~a 138 (302)
T TIGR01188 69 GIVPQYASVDEDLTGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRP---------VGTYSGGMRRRLDIAAS 138 (302)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCc---------hhhCCHHHHHHHHHHHH
Confidence 99999998875 5999999764211100 0011134578889999997665543 67999999999999999
Q ss_pred HhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 249 FYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
|+++|++|||||||+|||+.+...+.+++++ .|+|+|++||+++.+.
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEAD 188 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 9999999999999999999999999888765 3799999999998765
No 233
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-33 Score=255.16 Aligned_cols=185 Identities=19% Similarity=0.173 Sum_probs=142.8
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
...++++||++.|+. .. +++|+||+|++|++++|+ |+| || |+++ + .|+
T Consensus 37 ~~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------L----~Gl 88 (286)
T PRK14275 37 KPHVVAKNFSIYYGE-FE--------AVKKVNADILSKYVTAII--------GPSGCGKSTFLRA-------I----NRM 88 (286)
T ss_pred ceEEEEeeeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 346899999999953 33 899999999999999999 999 99 9999 8 887
Q ss_pred cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
.+ |++|+|... .++.++|+||++.++..|+.||+.++.............+.+.++++.+++
T Consensus 89 ~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l 168 (286)
T PRK14275 89 NDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL 168 (286)
T ss_pred cccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCC
Confidence 54 488987421 145799999999888789999998753110000000112456677888877
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~ 293 (298)
...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++. ++|||++||+++.
T Consensus 169 ~~~l~-----~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 169 WDEVS-----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ccchh-----hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 42110 0111246799999999999999999999999999999999999999999888753 6899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 244 ~~ 245 (286)
T PRK14275 244 AS 245 (286)
T ss_pred HH
Confidence 64
No 234
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-33 Score=248.70 Aligned_cols=177 Identities=21% Similarity=0.211 Sum_probs=145.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
+.++|++++|+. .. +++|+||+|++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------il~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~g~~~~ 52 (232)
T cd03300 1 IELENVSKFYGG-FV--------ALDGVSLDIKEGEFFTLL--------GPSGCGKTTLLRL-------I----AGFETP 52 (232)
T ss_pred CEEEeEEEEeCC-ee--------eeccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|+|... .++.++|+||++.++. .|+.+|+.+...... .......+++.++++.+++.++.++.
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~---- 127 (232)
T cd03300 53 TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK-LPKAEIKERVAEALDLVQLEGYANRK---- 127 (232)
T ss_pred CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhcCC----
Confidence 99987532 2457999999998875 599999976421100 00011234677888999998766553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||+|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 128 -----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~ 195 (232)
T cd03300 128 -----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEAL 195 (232)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 579999999999999999999999999999999999999999888764 2799999999998754
No 235
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=250.92 Aligned_cols=183 Identities=21% Similarity=0.196 Sum_probs=142.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+. .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~ 55 (253)
T PRK14267 4 AIETVNLRVYYGS-NH--------VIKGVDLKIPQNGVFALM--------GPSGCGKSTLLRT-------F----NRLLE 55 (253)
T ss_pred eEEEEeEEEEeCC-ee--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99988
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCC
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQL 215 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l 215 (298)
| ++|+|... .+++++|+||++.++. .|+.||+.++....... ......+.+.++++.+++
T Consensus 56 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (253)
T PRK14267 56 LNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAAL 135 (253)
T ss_pred cccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCC
Confidence 7 48987421 1356999999998876 59999998643111000 000112456778888887
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
...+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.
T Consensus 136 ~~~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 136 WDEVKD-----RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred ccchhh-----hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 532110 01224679999999999999999999999999999999999999999888765 36899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 211 ~~ 212 (253)
T PRK14267 211 AA 212 (253)
T ss_pred HH
Confidence 64
No 236
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-33 Score=251.12 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=141.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|++ .. +|+|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~i~~v~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----aGl~~ 55 (258)
T PRK14241 4 RIDVKDLNIYYGS-FH--------AVEDVNLNIEPRSVTAFI--------GPSGCGKSTVLRT-------L----NRMHE 55 (258)
T ss_pred cEEEeeEEEEECC-Ee--------eeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 88886
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
| ++|+|... .++.++|+||++.++. .|++||+.++............++.+.++++.+++.
T Consensus 56 ~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (258)
T PRK14241 56 VIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLW 135 (258)
T ss_pred cccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 4 68987531 1356999999998775 699999976431100000011134567788888874
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~ 294 (298)
..+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+
T Consensus 136 ~~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~ 210 (258)
T PRK14241 136 NEVKD-----RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQA 210 (258)
T ss_pred hhhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 32110 01123679999999999999999999999999999999999999999888765 368999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 211 ~ 211 (258)
T PRK14241 211 A 211 (258)
T ss_pred H
Confidence 4
No 237
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-33 Score=243.95 Aligned_cols=170 Identities=25% Similarity=0.241 Sum_probs=138.3
Q ss_pred EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
.+ ||+++|++ . .+ |+||+|++ |+++|+ |+| || |+++ + +|+++|+
T Consensus 3 ~~-~l~~~~~~-~---------~~-~vsl~i~~-e~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~~ 50 (214)
T cd03297 3 CV-DIEKRLPD-F---------TL-KIDFDLNE-EVTGIF--------GASGAGKSTLLRC-------I----AGLEKPD 50 (214)
T ss_pred ee-eeeEecCC-e---------ee-CceEEEcc-eeEEEE--------CCCCCCHHHHHHH-------H----hCCCCCC
Confidence 44 89999963 2 34 99999999 999999 999 99 9999 8 9999999
Q ss_pred Cceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 158 GGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 158 ~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|+|... .++.++|+||++.++. .|+++|+.++.... ......+++.++++.+++.+..++
T Consensus 51 ~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~ 127 (214)
T cd03297 51 GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNR 127 (214)
T ss_pred CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhc
Confidence 9987421 1346999999998875 69999998653110 001123467788999998765554
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+ +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 128 ~---------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 128 Y---------PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred C---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence 3 679999999999999999999999999999999999999999887764 2789999999998764
No 238
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-33 Score=249.48 Aligned_cols=182 Identities=22% Similarity=0.231 Sum_probs=141.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc-
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP- 155 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~- 155 (298)
-+++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+.+
T Consensus 6 ~~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------i----~G~~~~ 57 (251)
T PRK14244 6 ASVKNLNLWYGS-KQ--------ILFDINLDIYKREVTAFI--------GPSGCGKSTFLRC-------F----NRMNDF 57 (251)
T ss_pred EEeeeEEEEECC-ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhccc
Confidence 368999999953 33 899999999999999999 999 99 9999 8 88875
Q ss_pred ----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCch
Q psy11400 156 ----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~ 217 (298)
|++|+|... .++.++|+||++.++..|+.+|+.++....... .....++.+.++++.+++.+
T Consensus 58 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (251)
T PRK14244 58 VPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE 137 (251)
T ss_pred CCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 468987521 245799999999888789999998642110000 00011345677889988864
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.... .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 138 ~~~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 212 (251)
T PRK14244 138 ELGD-----RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAK 212 (251)
T ss_pred hhhh-----HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 2110 01123678999999999999999999999999999999999999999888765 3799999999998765
No 239
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=251.54 Aligned_cols=185 Identities=21% Similarity=0.230 Sum_probs=143.9
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
..+++++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+
T Consensus 23 ~~~l~~~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----aGl 74 (272)
T PRK14236 23 QTALEVRNLNLFYGD-KQ--------ALFDISMRIPKNRVTAFI--------GPSGCGKSTLLRC-------F----NRM 74 (272)
T ss_pred CcEEEEEEEEEEECC-ee--------EeeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhc
Confidence 457999999999953 33 899999999999999999 999 99 9999 8 898
Q ss_pred ccc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WPL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
++| ++|+|... .++.++|+||++.++..|++||+.+..............+.+.++++.+++
T Consensus 75 ~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l 154 (272)
T PRK14236 75 NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAAL 154 (272)
T ss_pred CCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC
Confidence 873 78987421 245799999999888789999998642111000000112456777888887
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
.+.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.++..+.+++++ .+.|+|++||+++.
T Consensus 155 ~~~~~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 155 WDEVKD-----RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred ChhHHH-----HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 532111 01124679999999999999999999999999999999999999999888765 26899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 230 ~~ 231 (272)
T PRK14236 230 AA 231 (272)
T ss_pred HH
Confidence 54
No 240
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-33 Score=250.91 Aligned_cols=183 Identities=19% Similarity=0.157 Sum_probs=142.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||+++|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 7 ~l~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLlk~-------l----~Gl~~ 58 (259)
T PRK14260 7 AIKVKDLSFYYNT-SK--------AIEGISMDIYRNKVTAII--------GPSGCGKSTFIKT-------L----NRISE 58 (259)
T ss_pred eEEEEEEEEEECC-eE--------eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhcC
Confidence 5899999999953 33 899999999999999999 999 99 9999 8 88887
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
| ++|+|... .+..++|+||++.++..|++||+.++............++.+.++++.+++.+
T Consensus 59 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 138 (259)
T PRK14260 59 LEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQ 138 (259)
T ss_pred cccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc
Confidence 4 47886521 13469999999988889999999764211000000011234667788888753
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 139 ~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~ 213 (259)
T PRK14260 139 EVKD-----KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQAT 213 (259)
T ss_pred hhhh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2211 11124679999999999999999999999999999999999999999988765 2689999999998765
No 241
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7e-32 Score=247.93 Aligned_cols=179 Identities=18% Similarity=0.235 Sum_probs=144.8
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
...|+++|+++. +.. +++|+||+|++|++++|+ |+| || |+++ | +|+
T Consensus 37 ~~~l~i~nls~~---~~~--------vL~~vs~~i~~Ge~~~li--------G~NGsGKSTLl~~-------I----~Gl 86 (282)
T cd03291 37 DNNLFFSNLCLV---GAP--------VLKNINLKIEKGEMLAIT--------GSTGSGKTSLLML-------I----LGE 86 (282)
T ss_pred CCeEEEEEEEEe---ccc--------ceeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 456999999985 233 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-c
Q psy11400 154 WPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-W 231 (298)
Q Consensus 154 ~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~ 231 (298)
++|++|+|.... .|+|+||+++++..|++||+.++.. ....++.++++.+++.+.++. +.++++..+ .
T Consensus 87 ~~p~~G~I~i~g--~i~yv~q~~~l~~~tv~enl~~~~~--------~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~ 156 (282)
T cd03291 87 LEPSEGKIKHSG--RISFSSQFSWIMPGTIKENIIFGVS--------YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156 (282)
T ss_pred CCCCCcEEEECC--EEEEEeCcccccccCHHHHhhcccc--------cCHHHHHHHHHHhCCHHHHHhccccccceecCC
Confidence 999999997543 6999999999888899999987531 112234556666777665544 344444333 5
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+ ++ .+.|+|++||+++.+..
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~ 224 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHh
Confidence 6799999999999999999999999999999999999998887643 32 37899999999987653
No 242
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.8e-33 Score=272.25 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|.+ .. +++|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 4 ~i~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~G~~~ 55 (501)
T PRK10762 4 LLQLKGIDKAFPG-VK--------ALSGAALNVYPGRVMALV--------GENGAGKSTMMKV-------L----TGIYT 55 (501)
T ss_pred eEEEeeeEEEeCC-eE--------EeeeeeEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhh---hhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDM---IQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|+|... .++.++|+||++.++. .|++||+.++...... .......+++.++++.+++.+..
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 135 (501)
T PRK10762 56 RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS 135 (501)
T ss_pred CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc
Confidence 999998532 1356999999987764 6999999876421100 00001124577889999987655
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+++ +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .+.|+|+|||+++.+..
T Consensus 136 ~~~---------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 136 DKL---------VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred cCc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 443 679999999999999999999999999999999999999999877654 48899999999987653
No 243
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-32 Score=246.40 Aligned_cols=176 Identities=23% Similarity=0.306 Sum_probs=144.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
|+++|+++.|+. . +++|+||+|++||+++|+ |+| || |+++ + +|+.+|
T Consensus 1 l~~~~l~~~~~~--~--------~l~~is~~i~~Ge~~~i~--------G~nG~GKStLl~~-------l----~G~~~p 51 (235)
T cd03299 1 LKVENLSKDWKE--F--------KLKNVSLEVERGDYFVIL--------GPTGSGKSVLLET-------I----AGFIKP 51 (235)
T ss_pred CeeEeEEEEeCC--c--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcCC
Confidence 468899999952 3 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
++|++... .++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.++.++.
T Consensus 52 ~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~---- 126 (235)
T cd03299 52 DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRK---- 126 (235)
T ss_pred CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcC----
Confidence 99987532 2457999999998774 799999986431110 00011234567889999997766553
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++||||++.+|++++|||||++||+.+.+.+.+.+++ .++|+|++||++..+.
T Consensus 127 -----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 127 -----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 678999999999999999999999999999999999999999887764 2899999999998754
No 244
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=247.97 Aligned_cols=184 Identities=20% Similarity=0.189 Sum_probs=140.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++||+++|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+.
T Consensus 4 ~~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~ 55 (252)
T PRK14255 4 KIITSSDVHLFYGK-FE--------ALKGIDLDFNQNEITALI--------GPSGCGKSTYLRT-------L----NRMN 55 (252)
T ss_pred ceEEEEeEEEEECC-ee--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence 36899999999963 33 899999999999999999 999 99 9999 8 8876
Q ss_pred c--c---CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 P--L---FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~--~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
+ | ++|+|... .++.++|+||++.++..|+++|+.++............++++.++++.+++.
T Consensus 56 ~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14255 56 DLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135 (252)
T ss_pred ccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc
Confidence 4 4 47886421 1357999999998877899999986421100000001123455667777664
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~ 294 (298)
..+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|+|||+++.+
T Consensus 136 ~~i~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 136 DEVKD-----HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred cchhh-----HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 21110 111246799999999999999999999999999999999999999998887653 68999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 211 ~ 211 (252)
T PRK14255 211 S 211 (252)
T ss_pred H
Confidence 4
No 245
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.4e-32 Score=250.83 Aligned_cols=180 Identities=22% Similarity=0.246 Sum_probs=142.0
Q ss_pred cEEEeeeeEecCC--------CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccc
Q psy11400 80 LRGRLGITLGLRS--------GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLG 147 (298)
Q Consensus 80 ~i~~~~v~~~~~~--------~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~ 147 (298)
+|+++||++.|+. +.. +++|+||+|++|++++|+ |+| || |+++ +
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l- 58 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQT--------VLNNVSLSLKSGETVALL--------GRSGCGKSTLARL-------L- 58 (268)
T ss_pred eEEEeceEEEecCCccccccCcee--------eEeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H-
Confidence 4889999999973 223 999999999999999999 999 99 9999 8
Q ss_pred cccccccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400 148 TLRDQLWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210 (298)
Q Consensus 148 ~~~~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 210 (298)
+|+++|++|+|... .++.++|+||++. ++ ..|+.+|+.++...............+.+++
T Consensus 59 ---~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l 135 (268)
T PRK10419 59 ---VGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEML 135 (268)
T ss_pred ---hCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 99999999997521 1357999999983 43 4699999865321000000111234577888
Q ss_pred HHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEE
Q psy11400 211 QKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLF 285 (298)
Q Consensus 211 ~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiI 285 (298)
+.+++. ...++ .+..||||||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|
T Consensus 136 ~~~gl~~~~~~~---------~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii 206 (268)
T PRK10419 136 RAVDLDDSVLDK---------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206 (268)
T ss_pred HHcCCChhHhhC---------CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 888886 34444 3678999999999999999999999999999999999999888887654 378999
Q ss_pred EEecCcchhh
Q psy11400 286 TVSHRKSLWT 295 (298)
Q Consensus 286 iitH~l~~~~ 295 (298)
++||+++.+.
T Consensus 207 ivsH~~~~i~ 216 (268)
T PRK10419 207 FITHDLRLVE 216 (268)
T ss_pred EEECCHHHHH
Confidence 9999998765
No 246
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1e-32 Score=258.71 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=142.1
Q ss_pred CcEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 79 NLRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
..++++|+++.|+.+ ... +++|+||+|++||+++|+ |+| || |+++ + .|
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~iv--------G~sGsGKSTL~~~-------l----~G 64 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVT-------AVNDLNFSLRAGETLGIV--------GESGSGKSQTAFA-------L----MG 64 (330)
T ss_pred ceEEEeCeEEEEecCCCCEE-------EEeeeEEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----Hc
Confidence 468999999999632 222 899999999999999999 999 99 9999 8 89
Q ss_pred ccccC---Cceeecc---------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400 153 LWPLF---GGTVTKP---------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211 (298)
Q Consensus 153 l~~~~---~G~i~~~---------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 211 (298)
+++|. +|+|... .++.|+||||+|. ++ ..|+.+|+..+.............+++.++++
T Consensus 65 l~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~ 144 (330)
T PRK09473 65 LLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD 144 (330)
T ss_pred CCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 98885 8987421 1247999999983 43 46888888653211000000111245677888
Q ss_pred HcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 212 ~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
.+++.+..+ ....++.+|||||+||++|||||+.+|++||+||||++||+.++..+.+++++ .+.|+|+|
T Consensus 145 ~vgL~~~~~------~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i 218 (330)
T PRK09473 145 AVKMPEARK------RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218 (330)
T ss_pred HcCCCChHH------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 888854211 12235789999999999999999999999999999999999999988887654 38999999
Q ss_pred ecCcchhhh
Q psy11400 288 SHRKSLWTH 296 (298)
Q Consensus 288 tH~l~~~~~ 296 (298)
||+++.+..
T Consensus 219 THdl~~~~~ 227 (330)
T PRK09473 219 THDLGVVAG 227 (330)
T ss_pred ECCHHHHHH
Confidence 999998753
No 247
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=249.18 Aligned_cols=182 Identities=21% Similarity=0.207 Sum_probs=141.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||+++|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 10 ~l~i~~v~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 61 (264)
T PRK14243 10 VLRTENLNVYYGS-FL--------AVKNVWLDIPKNQITAFI--------GPSGCGKSTILRC-------F----NRLND 61 (264)
T ss_pred EEEEeeeEEEECC-EE--------EeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhhc
Confidence 6899999999953 33 899999999999999999 999 99 9999 7 88765
Q ss_pred -----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 -----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 -----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
|++|+|... .+++++|+||++.++..|+.+|+.++...... .....+++.++++.+++.+
T Consensus 62 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~ 139 (264)
T PRK14243 62 LIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY--KGDMDELVERSLRQAALWD 139 (264)
T ss_pred ccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCc--chHHHHHHHHHHHHhCchh
Confidence 378887421 14569999999988778999999875421100 0111344566777777743
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++. +.|||++||+++.+.
T Consensus 140 ~l~~-----~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 140 EVKD-----KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214 (264)
T ss_pred hHHH-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 2211 011246799999999999999999999999999999999999999999887652 689999999998765
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 215 ~ 215 (264)
T PRK14243 215 R 215 (264)
T ss_pred H
Confidence 3
No 248
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.3e-32 Score=270.21 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=146.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 11 ~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~li--------G~NGsGKSTLl~~-------l----~Gl~~ 62 (510)
T PRK15439 11 LLCARSISKQYSG-VE--------VLKGIDFTLHAGEVHALL--------GGNGAGKSTLMKI-------I----AGIVP 62 (510)
T ss_pred eEEEEeEEEEeCC-ce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6999999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|+|.... +..++|+||++.++. .|+.||+.++... .....+++.++++.+++.+..+++
T Consensus 63 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~ 137 (510)
T PRK15439 63 PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-----RQASMQKMKQLLAALGCQLDLDSS 137 (510)
T ss_pred CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-----chHHHHHHHHHHHHcCCCccccCC
Confidence 9999985321 246999999998765 5999999886421 111235678889999997655543
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|||||||++||+.....+.+++++ .|+|||++||+++.+.
T Consensus 138 ---------~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~ 204 (510)
T PRK15439 138 ---------AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIR 204 (510)
T ss_pred ---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999888764 4899999999998764
No 249
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.8e-32 Score=259.45 Aligned_cols=169 Identities=24% Similarity=0.300 Sum_probs=139.4
Q ss_pred eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
|+++.|++ . .+ |+||+|++|++++|+ ||| || |+++ + +|+++|++|+
T Consensus 4 ~l~~~~~~--~--------~~-~isl~i~~Gei~~l~--------G~nGsGKSTLl~~-------i----aGl~~p~~G~ 53 (354)
T TIGR02142 4 RFSKRLGD--F--------SL-DADFTLPGQGVTAIF--------GRSGSGKTTLIRL-------I----AGLTRPDEGE 53 (354)
T ss_pred EEEEEECC--E--------EE-EEEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceE
Confidence 78888852 2 35 999999999999999 999 99 9999 8 9999999999
Q ss_pred eec---------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 161 VTK---------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 161 i~~---------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
|.. ..++.++|+||++.+|. .|++||+.++.... ......+++.++++.+++.++.+++
T Consensus 54 I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~-- 128 (354)
T TIGR02142 54 IVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRL-- 128 (354)
T ss_pred EEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCC--
Confidence 742 12456999999998875 59999998764211 0111234578889999998766653
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+++ .++|+|++||+++.+.
T Consensus 129 -------~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~ 196 (354)
T TIGR02142 129 -------PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVL 196 (354)
T ss_pred -------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 679999999999999999999999999999999999999988887764 3799999999998764
No 250
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=247.34 Aligned_cols=183 Identities=20% Similarity=0.224 Sum_probs=141.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +|+|+||+|++||+++|+ |+| || |+++ + +|+++
T Consensus 6 ~i~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 57 (253)
T PRK14261 6 ILSTKNLNLWYGE-KH--------ALYDITISIPKNRVTALI--------GPSGCGKSTLLRC-------F----NRMND 57 (253)
T ss_pred eEEEeeeEEEECC-ee--------eeeeeEEEECCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence 6899999999963 33 899999999999999999 999 99 9999 7 88764
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
+ ++|+|... .++.++|+||++.++..|++||+.+.............++.+.++++.+++.+
T Consensus 58 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (253)
T PRK14261 58 LIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137 (253)
T ss_pred CCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch
Confidence 2 47876421 13569999999988878999999875321100000111345667788887743
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 138 ~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~ 212 (253)
T PRK14261 138 EVKD-----RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAA 212 (253)
T ss_pred hhHH-----HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHH
Confidence 2211 01124679999999999999999999999999999999999999999888765 2689999999998764
No 251
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=251.22 Aligned_cols=184 Identities=21% Similarity=0.238 Sum_probs=142.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..+.++||++.|+. .. +++|+||+|++||+++|+ |+| || |+++ + .|++
T Consensus 20 ~~l~i~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl~ 71 (276)
T PRK14271 20 PAMAAVNLTLGFAG-KT--------VLDQVSMGFPARAVTSLM--------GPTGSGKTTFLRT-------L----NRMN 71 (276)
T ss_pred cEEEEeeEEEEECC-EE--------EeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hccC
Confidence 46899999999963 34 899999999999999999 999 99 9999 8 8988
Q ss_pred cc-----CCceeecc------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 155 PL-----FGGTVTKP------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 155 ~~-----~~G~i~~~------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
+| ++|+|... .++.++|+||++.+|..|+++|+.++...............+.++++.+++..
T Consensus 72 ~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 151 (276)
T PRK14271 72 DKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD 151 (276)
T ss_pred CcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc
Confidence 75 68987531 14579999999988889999999865311000000001123456778888754
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
.... .....+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++. ++|||++||+++.+.
T Consensus 152 ~~~~-----~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~ 226 (276)
T PRK14271 152 AVKD-----RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA 226 (276)
T ss_pred hhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3210 011246799999999999999999999999999999999999999998887753 689999999998754
No 252
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=271.72 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=145.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 5 ~l~~~nl~~~~~~-~~--------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (506)
T PRK13549 5 LLEMKNITKTFGG-VK--------ALDNVSLKVRAGEIVSLC--------GENGAGKSTLMKV-------L----SGVYP 56 (506)
T ss_pred eEEEeeeEEEeCC-eE--------eecceeEEEeCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6899999999953 33 899999999999999999 999 99 9999 8 99998
Q ss_pred c--CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch--hhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 156 L--FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE--DMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 156 ~--~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
| ++|+|... .++.++||||++.++. .|++||+.++.... .........+++.++++.+++.+.
T Consensus 57 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 136 (506)
T PRK13549 57 HGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN 136 (506)
T ss_pred CCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 6 79997531 1356999999997765 69999998764211 000000112457788999998765
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+++ +.+||||||||++|||||+.+|++|||||||++||+.....+.+++++ .|+|+|+|||+++.+.
T Consensus 137 ~~~~---------~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~ 207 (506)
T PRK13549 137 PATP---------VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVK 207 (506)
T ss_pred cccc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 5443 679999999999999999999999999999999999999998887754 4789999999998765
No 253
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=248.60 Aligned_cols=186 Identities=19% Similarity=0.234 Sum_probs=143.7
Q ss_pred cCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 77 RNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 77 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
....|+++|+++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|
T Consensus 13 ~~~~l~~~~l~~~~~~-~~--------vl~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G 64 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG-YQ--------ALKNINMMVHEKQVTALI--------GPSGCGKSTFLRC-------F----NR 64 (265)
T ss_pred CCceEEEEEEEEEECC-ee--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence 3467999999999963 33 899999999999999999 999 99 9999 8 88
Q ss_pred cccc-----CCceeecc---------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400 153 LWPL-----FGGTVTKP---------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212 (298)
Q Consensus 153 l~~~-----~~G~i~~~---------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 212 (298)
+.+| ++|+|... .++.++|+||++.++..|++||+.++............++++.++++.
T Consensus 65 l~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (265)
T PRK14252 65 MHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRN 144 (265)
T ss_pred ccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHH
Confidence 8764 68887431 145699999999888889999998653110000001123456777777
Q ss_pred cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecC
Q psy11400 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHR 290 (298)
Q Consensus 213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~ 290 (298)
+++...+. +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|+|||+
T Consensus 145 ~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~ 219 (265)
T PRK14252 145 AALWDEVK-----DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN 219 (265)
T ss_pred cCCchhhh-----HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 77642111 011123679999999999999999999999999999999999999999888775 26899999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
++.+.
T Consensus 220 ~~~~~ 224 (265)
T PRK14252 220 MQQAA 224 (265)
T ss_pred HHHHH
Confidence 98764
No 254
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.2e-32 Score=246.96 Aligned_cols=179 Identities=22% Similarity=0.248 Sum_probs=140.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 54 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GK--------GCRDVSFDLYPGEVLGIV--------GESGSGKSTLLGC-------L----AGRLA 54 (253)
T ss_pred eEEEeeeEEEeCC-ce--------EeecceEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC--------------------CCcEEEEcCcCC--C-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400 156 LFGGTVTKPP--------------------RGKLFYVPQRPY--M-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212 (298)
Q Consensus 156 ~~~G~i~~~~--------------------r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 212 (298)
|++|+|.... ++.++|++|++. + +..|+.+|+.+..............+.+.++++.
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (253)
T TIGR02323 55 PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEE 134 (253)
T ss_pred CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 9999875321 135999999985 2 2358888875321000000001123567788899
Q ss_pred cCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 213 ~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
+++. ...++ .+..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|+|
T Consensus 135 l~l~~~~~~~---------~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~v 205 (253)
T TIGR02323 135 VEIDPTRIDD---------LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV 205 (253)
T ss_pred cCCChhhhhc---------CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8886 34444 3679999999999999999999999999999999999999998887654 37999999
Q ss_pred ecCcchhh
Q psy11400 288 SHRKSLWT 295 (298)
Q Consensus 288 tH~l~~~~ 295 (298)
||+++.+.
T Consensus 206 sH~~~~~~ 213 (253)
T TIGR02323 206 THDLGVAR 213 (253)
T ss_pred eCCHHHHH
Confidence 99998765
No 255
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=256.82 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=141.3
Q ss_pred cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.++++|++++|+.+ .. .+++|+||+|++||+++|+ |+| || |+++ + .|+
T Consensus 3 ~L~v~~l~~~y~~~~~~~-------~~l~~vsl~i~~Ge~~~iv--------G~sGsGKSTLl~~-------i----~Gl 56 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWV-------KAVDRVSMTLTEGEIRGLV--------GESGSGKSLIAKA-------I----CGV 56 (330)
T ss_pred eEEEeeeEEEEeCCCCCE-------EEEeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----Hcc
Confidence 58999999999632 22 2899999999999999999 999 99 9998 7 787
Q ss_pred cc----cCCceeecc---------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcch---hh-hhc-CCCHHHH
Q psy11400 154 WP----LFGGTVTKP---------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKE---DM-IQK-GITDADL 206 (298)
Q Consensus 154 ~~----~~~G~i~~~---------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~---~~-~~~-~~~~~~i 206 (298)
.+ +++|+|... .++.|+||||+|. +. ..|+.+|+..+.... .. ... ....+++
T Consensus 57 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 136 (330)
T PRK15093 57 TKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRA 136 (330)
T ss_pred CCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 75 578887421 1246999999996 33 368999986421100 00 000 0113467
Q ss_pred HHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCc
Q psy11400 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGI 282 (298)
Q Consensus 207 ~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~ 282 (298)
.++++.++|.+..+. ....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|.
T Consensus 137 ~~~L~~~gL~~~~~~------~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 210 (330)
T PRK15093 137 IELLHRVGIKDHKDA------MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT 210 (330)
T ss_pred HHHHHHCCCCChHHH------HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 889999999642211 1124789999999999999999999999999999999999999999888765 389
Q ss_pred EEEEEecCcchhhh
Q psy11400 283 TLFTVSHRKSLWTH 296 (298)
Q Consensus 283 TiIiitH~l~~~~~ 296 (298)
|+|+|||+++.+..
T Consensus 211 tii~itHdl~~v~~ 224 (330)
T PRK15093 211 TILLISHDLQMLSQ 224 (330)
T ss_pred EEEEEECCHHHHHH
Confidence 99999999998753
No 256
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=270.31 Aligned_cols=179 Identities=18% Similarity=0.175 Sum_probs=145.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||++++|++++|+ |+| || |+++ + .|+++
T Consensus 4 ~l~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 55 (501)
T PRK11288 4 YLSFDGIGKTFPG-VK--------ALDDISFDCRAGQVHALM--------GENGAGKSTLLKI-------L----SGNYQ 55 (501)
T ss_pred eEEEeeeEEEECC-EE--------EEeeeeEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch--hhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE--DMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .+++|+|+||++.++. .|+.+|+.++.... .........+++.++++.+++.+..+
T Consensus 56 p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (501)
T PRK11288 56 PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135 (501)
T ss_pred CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC
Confidence 999998531 1457999999997765 59999998753211 00000011346778899998865443
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++ .|+|+|+|||+++.+.
T Consensus 136 ~---------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~ 204 (501)
T PRK11288 136 T---------PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIF 204 (501)
T ss_pred C---------chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3 3679999999999999999999999999999999999999999887764 4899999999998764
No 257
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-32 Score=249.32 Aligned_cols=179 Identities=18% Similarity=0.165 Sum_probs=143.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++++|.+ .. +|+|+||+|++|++++|+ |+| || |+++ | +|+++
T Consensus 1 ml~~~nl~~~~~~-~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----aG~~~ 52 (272)
T PRK13547 1 MLTADHLHVARRH-RA--------ILRDLSLRIEPGRVTALL--------GRNGAGKSTLLKA-------L----AGDLT 52 (272)
T ss_pred CeEEEEEEEEECC-Ee--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999953 33 899999999999999999 999 99 9999 8 99998
Q ss_pred cC--------Cceeecc-----------CCCcEEEEcCcCC-CCCCCHHHHHccCCcchhh---hhcCCCHHHHHHHHHH
Q psy11400 156 LF--------GGTVTKP-----------PRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDM---IQKGITDADLTEYLQK 212 (298)
Q Consensus 156 ~~--------~G~i~~~-----------~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~~~---~~~~~~~~~i~~~l~~ 212 (298)
|+ +|+|... .++.++|+||++. ++..|++||+.++...... .......+.+.++++.
T Consensus 53 p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (272)
T PRK13547 53 GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL 132 (272)
T ss_pred CcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH
Confidence 87 8987531 1345899999986 4678999999875321100 0000123456788889
Q ss_pred cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHh----
Q psy11400 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCRE---- 279 (298)
Q Consensus 213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~---- 279 (298)
+++.+..+++ +.+||||||||++|||||+ .+|++|||||||++||+.+.+.+.+++++
T Consensus 133 ~~l~~~~~~~---------~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 203 (272)
T PRK13547 133 AGATALVGRD---------VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD 203 (272)
T ss_pred cCcHhhhcCC---------cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 9987665543 6799999999999999999 59999999999999999999999888764
Q ss_pred cCcEEEEEecCcchhh
Q psy11400 280 VGITLFTVSHRKSLWT 295 (298)
Q Consensus 280 ~~~TiIiitH~l~~~~ 295 (298)
.++|+|+|||+++.+.
T Consensus 204 ~~~tviiisH~~~~~~ 219 (272)
T PRK13547 204 WNLGVLAIVHDPNLAA 219 (272)
T ss_pred cCCEEEEEECCHHHHH
Confidence 2799999999998764
No 258
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.1e-32 Score=245.67 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=142.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||++.|++ .. +++|+||+|++||+++|+ |+| || |+++ + +|+.+
T Consensus 3 ~l~~~~v~~~~~~-~~--------~l~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 54 (250)
T PRK14266 3 RIEVENLNTYFDD-AH--------ILKNVNLDIPKNSVTALI--------GPSGCGKSTFIRT-------L----NRMND 54 (250)
T ss_pred EEEEEeEEEEeCC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhhc
Confidence 3789999999963 33 899999999999999999 999 99 9999 7 77653
Q ss_pred -----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 -----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 -----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
|++|+|... .+++++|+||++.+|..|+.||+.++.............+.+.++++.+++.+
T Consensus 55 ~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14266 55 LIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134 (250)
T ss_pred cCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCch
Confidence 378887421 14579999999988888999999875311100000012345677888888854
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+... ....+.+||||||||++|||||+.+|++++|||||++||+.+...+.+.+++ .+.|+|++||+++.+.
T Consensus 135 ~l~~~-----~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 209 (250)
T PRK14266 135 EVKDK-----LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQAT 209 (250)
T ss_pred hHHHH-----HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHH
Confidence 32210 1123679999999999999999999999999999999999999999888765 3789999999998664
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 210 ~ 210 (250)
T PRK14266 210 R 210 (250)
T ss_pred h
Confidence 3
No 259
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.9e-32 Score=247.64 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=142.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|+. .. +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 7 ~l~~~nl~~~~~~-~~--------il~~is~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl~~ 58 (261)
T PRK14258 7 AIKVNNLSFYYDT-QK--------ILEGVSMEIYQSKVTAII--------GPSGCGKSTFLKC-------L----NRMNE 58 (261)
T ss_pred eEEEeeEEEEeCC-ee--------EeeceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccC
Confidence 6899999999953 33 899999999999999999 999 99 9999 8 89988
Q ss_pred cC-----Cceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 LF-----GGTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~~-----~G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
|+ +|++.. ..++.++|+||++.++..|+.||+.+..............+.+.++++.+++.+
T Consensus 59 ~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 138 (261)
T PRK14258 59 LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD 138 (261)
T ss_pred CCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc
Confidence 75 676531 114569999999988779999999764210000000011245677888888754
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
.+.. .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.
T Consensus 139 ~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~ 213 (261)
T PRK14258 139 EIKH-----KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ 213 (261)
T ss_pred hhhh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 3211 01123679999999999999999999999999999999999999998887764 38999999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 214 i~ 215 (261)
T PRK14258 214 VS 215 (261)
T ss_pred HH
Confidence 64
No 260
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.8e-32 Score=269.51 Aligned_cols=179 Identities=17% Similarity=0.096 Sum_probs=145.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +++|+||+|++||+++|+ ||| || |+++ + +|+++
T Consensus 5 ~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~li--------G~nGsGKSTLl~~-------i----~Gl~~ 56 (510)
T PRK09700 5 YISMAGIGKSFGP-VH--------ALKSVNLTVYPGEIHALL--------GENGAGKSTLMKV-------L----SGIHE 56 (510)
T ss_pred eEEEeeeEEEcCC-eE--------EeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCcC
Confidence 6899999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-hhh-----cCCCHHHHHHHHHHcCCc
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-MIQ-----KGITDADLTEYLQKVQLG 216 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-~~~-----~~~~~~~i~~~l~~~~l~ 216 (298)
|++|+|... .+++++||||++.++. .|++||+.++..... ... .....+++.++++.+++.
T Consensus 57 p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 136 (510)
T PRK09700 57 PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK 136 (510)
T ss_pred CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC
Confidence 999998531 1246999999997765 599999987532100 000 001124577889999987
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
+..+++ +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|+|||+|||+++.
T Consensus 137 ~~~~~~---------~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~ 207 (510)
T PRK09700 137 VDLDEK---------VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE 207 (510)
T ss_pred CCcccc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 655443 679999999999999999999999999999999999999999887764 48999999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 208 ~~ 209 (510)
T PRK09700 208 IR 209 (510)
T ss_pred HH
Confidence 65
No 261
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=4.3e-32 Score=270.84 Aligned_cols=180 Identities=19% Similarity=0.244 Sum_probs=145.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 6 ~l~i~~l~~~y~~~~~--------il~~vs~~i~~Ge~~~ii--------G~NGsGKSTLlk~-------i----~G~~~ 58 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQ--------ILKDISLSFFPGAKIGVL--------GLNGAGKSTLLRI-------M----AGVDK 58 (556)
T ss_pred EEEEeeEEEEeCCCCe--------eeeCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6899999999962344 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcch-h------h----hhcC-----------------------
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-D------M----IQKG----------------------- 200 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-~------~----~~~~----------------------- 200 (298)
|++|+|......+|+||||+|.+++ .|+.||+.++.... . . ....
T Consensus 59 p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 59 EFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred CCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 9999997655668999999998765 59999998753100 0 0 0000
Q ss_pred -CCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 201 -ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 201 -~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
...+++.++++.+++.. .++ .+.+|||||||||+|||||+.+|++|||||||++||+.....+.+.+++
T Consensus 139 ~~~~~~~~~~l~~~gl~~-~~~---------~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPP-WDA---------KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred cchHHHHHHHHHhCCCCc-ccC---------chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 00234555666666632 222 4679999999999999999999999999999999999999999999998
Q ss_pred cCcEEEEEecCcchhhh
Q psy11400 280 VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 280 ~~~TiIiitH~l~~~~~ 296 (298)
.+.|+|+|||+++.+..
T Consensus 209 ~~~tviiisHd~~~~~~ 225 (556)
T PRK11819 209 YPGTVVAVTHDRYFLDN 225 (556)
T ss_pred CCCeEEEEeCCHHHHHh
Confidence 77899999999987653
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.9e-32 Score=247.30 Aligned_cols=185 Identities=22% Similarity=0.260 Sum_probs=143.4
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+.++.++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+
T Consensus 8 ~~~i~~~~~~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----aG~ 59 (257)
T PRK14246 8 EDVFNISRLYLYIND-KA--------ILKDITIKIPNNSIFGIM--------GPSGSGKSTLLKV-------L----NRL 59 (257)
T ss_pred hhheeeeeEEEecCC-ce--------eEeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 347999999999953 33 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeec-----------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WPLFGGTVTK-----------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~~~~G~i~~-----------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
++|++|+|.. ..++.++|+||++.++. .|+.+|+.++...............+.++++.+++
T Consensus 60 ~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (257)
T PRK14246 60 IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL 139 (257)
T ss_pred CCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 9998865421 01457999999998876 59999998753110000000012346778888888
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
...+. +.....+..||+|||||++|||||+.+|+++||||||++||+.+++.+.+.+.+ .++|+|++||+++.
T Consensus 140 ~~~~~-----~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~ 214 (257)
T PRK14246 140 WKEVY-----DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQ 214 (257)
T ss_pred Cccch-----hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHH
Confidence 54220 111224678999999999999999999999999999999999999999988765 36899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 215 ~~ 216 (257)
T PRK14246 215 VA 216 (257)
T ss_pred HH
Confidence 63
No 263
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.98 E-value=1.5e-32 Score=261.35 Aligned_cols=163 Identities=21% Similarity=0.208 Sum_probs=135.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC--------------
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP-------------- 165 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~-------------- 165 (298)
+++|+||+|++||+++|+ |+| || |+++ | .|+++|++|+|....
T Consensus 39 ~l~~vsf~i~~Gei~~I~--------G~nGsGKSTLlr~-------L----~Gl~~p~~G~I~idG~~~~~~i~~~~~~~ 99 (382)
T TIGR03415 39 GVANASLDIEEGEICVLM--------GLSGSGKSSLLRA-------V----NGLNPVSRGSVLVKDGDGSIDVANCDAAT 99 (382)
T ss_pred EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCCCCCcEEEECCEecccccccCCHHH
Confidence 899999999999999999 999 99 9999 8 999999999875321
Q ss_pred -----CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400 166 -----RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE 239 (298)
Q Consensus 166 -----r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq 239 (298)
+++|+||||++.+++ .|++||+.++..... .......+++.++++.+++.++.+++ +.+|||||
T Consensus 100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g-~~~~~~~~~a~e~le~vgL~~~~~~~---------~~~LSgGq 169 (382)
T TIGR03415 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQG-MPEAERRKRVDEQLELVGLAQWADKK---------PGELSGGM 169 (382)
T ss_pred HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHH
Confidence 147999999998876 799999987632110 00111234678899999998766553 67899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
|||++|||||+.+|++||||||||+||+.+...+++.+.+ .++|+|+|||+++.+.
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~ 229 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEAL 229 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999998887654 3899999999999764
No 264
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.8e-32 Score=246.06 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=138.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~ 55 (252)
T PRK14272 4 LLSAQDVNIYYGD-KQ--------AVKNVNLDVQRGTVNALI--------GPSGCGKTTFLRA-------I----NRMHD 55 (252)
T ss_pred EEEEeeeEEEECC-EE--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 5889999999963 33 899999999999999999 999 99 9999 8 99887
Q ss_pred cC-----Cceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 156 LF-----GGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 156 ~~-----~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
|. +|+|... .++.++|+||++.++. .|+.||+.++.............+.+.+.++.+++.
T Consensus 56 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14272 56 LTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135 (252)
T ss_pred CCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcc
Confidence 64 7887421 1346999999998876 599999976421100000000112344555666653
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW 294 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~ 294 (298)
..+.. ....++.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+
T Consensus 136 ~~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 210 (252)
T PRK14272 136 DEVKD-----RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQA 210 (252)
T ss_pred hhhhh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 21110 01124679999999999999999999999999999999999999999988775 369999999999876
Q ss_pred h
Q psy11400 295 T 295 (298)
Q Consensus 295 ~ 295 (298)
.
T Consensus 211 ~ 211 (252)
T PRK14272 211 A 211 (252)
T ss_pred H
Confidence 5
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.7e-32 Score=275.52 Aligned_cols=190 Identities=21% Similarity=0.256 Sum_probs=146.0
Q ss_pred CcEEEeeeeEecCCCCCCCCC--CcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDS--RWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~--~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
.+++++||++.|+.+...+.. ....+++|+||+|++||+++|+ |+| || |+++ + .|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lv--------G~nGsGKSTLlk~-------i----~G 372 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLV--------GESGSGKSTTGRA-------L----LR 372 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hc
Confidence 468999999999621000000 0012899999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 153 LWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 153 l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
+.+|++|+|... .+++|+||||+++ ++ ..|+.+|+.++.............+++.++++.+++
T Consensus 373 l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL 452 (623)
T PRK10261 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL 452 (623)
T ss_pred CCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999998531 1457999999984 54 469999997642110000000113467788999999
Q ss_pred c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400 216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR 290 (298)
Q Consensus 216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~ 290 (298)
. +..++ ++.+|||||||||+|||||+.+|++|||||||++||+.+...+++++++ .|.|+|+|||+
T Consensus 453 ~~~~~~~---------~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd 523 (623)
T PRK10261 453 LPEHAWR---------YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD 523 (623)
T ss_pred CHHHhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5 45554 3689999999999999999999999999999999999999999888753 48999999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
++.+..
T Consensus 524 l~~v~~ 529 (623)
T PRK10261 524 MAVVER 529 (623)
T ss_pred HHHHHH
Confidence 998754
No 266
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.5e-32 Score=247.68 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=142.7
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
..+++++|+++.|++ .. +|+|+||+|++||+++|+ |+| || |+++ + +|+
T Consensus 18 ~~~l~~~nl~~~~~~-~~--------~l~~vs~~i~~Ge~~~Ii--------G~nGsGKSTLl~~-------l----~Gl 69 (274)
T PRK14265 18 HSVFEVEGVKVFYGG-FL--------ALVDVHLKIPAKKIIAFI--------GPSGCGKSTLLRC-------F----NRM 69 (274)
T ss_pred CceEEEeeEEEEeCC-eE--------EEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 347999999999963 33 899999999999999999 999 99 9999 7 888
Q ss_pred ccc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WPL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
+++ ++|+|... .++.|+|+||++.++..|+.+|+.++...... ....++.+.++++.+++
T Consensus 70 ~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~l~~~~l 147 (274)
T PRK14265 70 NDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY--KGNLDELVEDSLRRAAI 147 (274)
T ss_pred cccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCc--hHHHHHHHHHHHHHccc
Confidence 753 58886421 14579999999988878999999875311100 00113445667777777
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~ 293 (298)
...+.. .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++. +.|||++||+++.
T Consensus 148 ~~~l~~-----~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 222 (274)
T PRK14265 148 WEEVKD-----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ 222 (274)
T ss_pred chhhHH-----HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 432211 111246799999999999999999999999999999999999999999988753 6899999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 223 ~~ 224 (274)
T PRK14265 223 AS 224 (274)
T ss_pred HH
Confidence 65
No 267
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.98 E-value=6.3e-32 Score=244.48 Aligned_cols=175 Identities=21% Similarity=0.165 Sum_probs=140.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.| +.. +++|+||++++||+++|+ |+| || |+++ + +|+.+
T Consensus 4 ~l~~~~l~~~~--~~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 54 (254)
T PRK10418 4 QIELRNIALQA--AQP--------LVHGVSLTLQRGRVLALV--------GGSGSGKSLTCAA-------A----LGILP 54 (254)
T ss_pred EEEEeCeEEEe--ccc--------eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 58999999999 334 899999999999999999 999 99 9999 8 99998
Q ss_pred c----CCceeecc---------CCCcEEEEcCcCC-CC--CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-
Q psy11400 156 L----FGGTVTKP---------PRGKLFYVPQRPY-MT--LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI- 218 (298)
Q Consensus 156 ~----~~G~i~~~---------~r~~i~~v~Q~~~-l~--~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~- 218 (298)
| ++|+|... .++.++|+||++. .+ ..|+.+|+.+..... .....++++.++++.+++.+.
T Consensus 55 ~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~ 131 (254)
T PRK10418 55 AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPADDATLTAALEAVGLENAA 131 (254)
T ss_pred CCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCChHHHHHHHHHHHcCCCChh
Confidence 8 89987532 1346999999984 23 258888875421100 011234567889999998752
Q ss_pred --hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400 219 --LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS 292 (298)
Q Consensus 219 --~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~ 292 (298)
+++ .+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|++||+++
T Consensus 132 ~~~~~---------~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 132 RVLKL---------YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred hhhhc---------CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 333 3679999999999999999999999999999999999999988887754 3799999999998
Q ss_pred hhh
Q psy11400 293 LWT 295 (298)
Q Consensus 293 ~~~ 295 (298)
.+.
T Consensus 203 ~~~ 205 (254)
T PRK10418 203 VVA 205 (254)
T ss_pred HHH
Confidence 764
No 268
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.1e-32 Score=249.77 Aligned_cols=163 Identities=23% Similarity=0.233 Sum_probs=136.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------------
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------------- 164 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------------- 164 (298)
-++|+||+|++||+..|+ |-| || |+|+ + .++.+|+.|+|...
T Consensus 43 Gv~~~sl~v~~GeIfViM--------GLSGSGKSTLvR~-------~----NrLiept~G~ilv~g~di~~~~~~~Lr~~ 103 (386)
T COG4175 43 GVNDASLDVEEGEIFVIM--------GLSGSGKSTLVRL-------L----NRLIEPTRGEILVDGKDIAKLSAAELREL 103 (386)
T ss_pred eeccceeeecCCeEEEEE--------ecCCCCHHHHHHH-------H----hccCCCCCceEEECCcchhcCCHHHHHHH
Confidence 478999999999999999 999 99 9999 8 99999999998531
Q ss_pred CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400 165 PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV 243 (298)
Q Consensus 165 ~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl 243 (298)
.++++++|||+.-| ++.||.||..|+....... +....+++.++++.+||..+.++ ++++|||||||||
T Consensus 104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~-~~er~~~a~~~l~~VgL~~~~~~---------yp~eLSGGMqQRV 173 (386)
T COG4175 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-KAEREERALEALELVGLEGYADK---------YPNELSGGMQQRV 173 (386)
T ss_pred HhhhhhhhhhhhccccchhHhhhhhcceeecCCC-HHHHHHHHHHHHHHcCchhhhhc---------CcccccchHHHHH
Confidence 35789999999876 4679999999997543211 12234667889999999888766 3789999999999
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~ 295 (298)
.|||||+.+|+||++|||+|||||-.+..+ .++-++.++|||+||||++.+-
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAl 229 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEAL 229 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence 999999999999999999999999655554 4455567999999999998653
No 269
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.7e-32 Score=250.32 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=144.4
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+.++.++||++.|++ .. +|+++||+|++|++++|+ |+| || |+++ + +|+
T Consensus 43 ~~~l~i~nl~~~~~~-~~--------iL~~is~~i~~Ge~~~Iv--------G~nGsGKSTLl~~-------L----~Gl 94 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DH--------ALKGVSMDIPEKSVTALI--------GPSGCGKSTFLRC-------L----NRM 94 (305)
T ss_pred CceEEEEEEEEEeCC-ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence 347999999999964 33 899999999999999999 999 99 9999 8 888
Q ss_pred cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhh---------hhc---CCCH
Q psy11400 154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDM---------IQK---GITD 203 (298)
Q Consensus 154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~---------~~~---~~~~ 203 (298)
++ |++|+|... .++.++|+||++.++..|++||+.++...... ... ...+
T Consensus 95 ~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (305)
T PRK14264 95 NDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174 (305)
T ss_pred ccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHH
Confidence 75 578987521 13579999999988888999999875321000 000 0113
Q ss_pred HHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--C
Q psy11400 204 ADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281 (298)
Q Consensus 204 ~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~ 281 (298)
+.+.++++.+++.+.+.. .....+.+||||||||++|||||+++|++|||||||++||+.+...+.+++++. +
T Consensus 175 ~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~ 249 (305)
T PRK14264 175 ELVERSLRQAALWDEVND-----RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE 249 (305)
T ss_pred HHHHHHHHHcCCchhhhH-----HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence 456778888887432211 011246799999999999999999999999999999999999999999888753 6
Q ss_pred cEEEEEecCcchhh
Q psy11400 282 ITLFTVSHRKSLWT 295 (298)
Q Consensus 282 ~TiIiitH~l~~~~ 295 (298)
.|+|++||+++.+.
T Consensus 250 ~tiiivtH~~~~i~ 263 (305)
T PRK14264 250 YTVVVVTHNMQQAA 263 (305)
T ss_pred CEEEEEEcCHHHHH
Confidence 89999999998764
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=7.7e-33 Score=230.85 Aligned_cols=162 Identities=29% Similarity=0.409 Sum_probs=137.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~ 168 (298)
+|+++||++.+||.++|+ ||| || |+|. + +.+.+|++|.+... .|++
T Consensus 18 il~~isl~v~~Ge~iait--------GPSG~GKStllk~-------v----a~Lisp~~G~l~f~Ge~vs~~~pea~Rq~ 78 (223)
T COG4619 18 ILNNISLSVRAGEFIAIT--------GPSGCGKSTLLKI-------V----ASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78 (223)
T ss_pred eecceeeeecCCceEEEe--------CCCCccHHHHHHH-------H----HhccCCCCceEEEcCccccccChHHHHHH
Confidence 999999999999999999 999 99 8898 7 88999999998531 3778
Q ss_pred EEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400 169 LFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMAR 247 (298)
Q Consensus 169 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR 247 (298)
|+|+.|.|.+|.+||.||+.||.... ....+.+...+.++.+++.+ ++.+ ...+||||||||++|+|
T Consensus 79 VsY~~Q~paLfg~tVeDNlifP~~~r---~rr~dr~aa~~llar~~l~~~~L~k---------~it~lSGGE~QriAliR 146 (223)
T COG4619 79 VSYCAQTPALFGDTVEDNLIFPWQIR---NRRPDRAAALDLLARFALPDSILTK---------NITELSGGEKQRIALIR 146 (223)
T ss_pred HHHHHcCccccccchhhccccchHHh---ccCCChHHHHHHHHHcCCchhhhcc---------hhhhccchHHHHHHHHH
Confidence 99999999999999999999997432 12345677888999999975 3443 36799999999999999
Q ss_pred HHhcCCCEEEEeccccCCCHHHHHHHHH----HHHhcCcEEEEEecCcch-hhh
Q psy11400 248 LFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSHRKSL-WTH 296 (298)
Q Consensus 248 aL~~~P~iliLDEPTs~LD~~~~~~i~~----~l~~~~~TiIiitH~l~~-~~~ 296 (298)
-|.--|+||+||||||+||+.+.+.+-+ +.++.+..++.|||+.+. ++|
T Consensus 147 ~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh 200 (223)
T COG4619 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH 200 (223)
T ss_pred HhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh
Confidence 9999999999999999999977665544 455668999999999986 443
No 271
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.7e-32 Score=267.59 Aligned_cols=179 Identities=21% Similarity=0.212 Sum_probs=146.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 1 ml~i~~ls~~~~~-~~--------il~~vsl~i~~Ge~~~li--------G~NGsGKSTLl~~-------l----~Gl~~ 52 (530)
T PRK15064 1 MLSTANITMQFGA-KP--------LFENISVKFGGGNRYGLI--------GANGCGKSTFMKI-------L----GGDLE 52 (530)
T ss_pred CEEEEEEEEEeCC-cE--------eEeCCEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 3789999999953 34 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcch-h------hhh--c----------------------CCCH
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-D------MIQ--K----------------------GITD 203 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-~------~~~--~----------------------~~~~ 203 (298)
|++|+|....+..|+|+||++.++. .|++||+.++.... . ... . ....
T Consensus 53 p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (530)
T PRK15064 53 PSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAE 132 (530)
T ss_pred CCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHH
Confidence 9999998765667999999987664 59999998653100 0 000 0 0112
Q ss_pred HHHHHHHHHcCCchhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCc
Q psy11400 204 ADLTEYLQKVQLGYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI 282 (298)
Q Consensus 204 ~~i~~~l~~~~l~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~ 282 (298)
.++.++++.+++.+.. ++ .+.+||||||||++|||||+.+|++|||||||++||+.....+.+++++.+.
T Consensus 133 ~~~~~~l~~~gl~~~~~~~---------~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 203 (530)
T PRK15064 133 ARAGELLLGVGIPEEQHYG---------LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS 203 (530)
T ss_pred HHHHHHHHhCCCChhHhcC---------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence 4567788888886533 22 2579999999999999999999999999999999999999999999988799
Q ss_pred EEEEEecCcchhh
Q psy11400 283 TLFTVSHRKSLWT 295 (298)
Q Consensus 283 TiIiitH~l~~~~ 295 (298)
|||+|||+++.+.
T Consensus 204 tiiivsHd~~~~~ 216 (530)
T PRK15064 204 TMIIISHDRHFLN 216 (530)
T ss_pred eEEEEeCCHHHHH
Confidence 9999999998765
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.3e-32 Score=274.02 Aligned_cols=183 Identities=19% Similarity=0.260 Sum_probs=144.4
Q ss_pred CCcEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 78 NNLRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
+.+++++|+++.|+.+ ..+ +++|+||+|++||+++|+ |+| || |+++ + .
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~-------~l~~is~~v~~Ge~~~lv--------G~nGsGKSTLl~~-------l----~ 63 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIA-------AVRNLSFSLQRGETLAIV--------GESGSGKSVTALA-------L----M 63 (623)
T ss_pred CceEEEeceEEEecCCCCcee-------EEEeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----H
Confidence 3479999999999632 222 999999999999999999 999 99 9999 8 9
Q ss_pred cccccCCceeecc-------------------------CCCcEEEEcCcC--CCCC-CCHHHHHccCCcchhhhhcCCCH
Q psy11400 152 QLWPLFGGTVTKP-------------------------PRGKLFYVPQRP--YMTL-GTLRDQVIYPHTKEDMIQKGITD 203 (298)
Q Consensus 152 ~l~~~~~G~i~~~-------------------------~r~~i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~ 203 (298)
|+++|++|+|... .+++|+||+|+| .++. .|+.||+.++.............
T Consensus 64 Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 143 (623)
T PRK10261 64 RLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM 143 (623)
T ss_pred cCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999986421 124699999998 4544 69999998753110000001123
Q ss_pred HHHHHHHHHcCCch---hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-
Q psy11400 204 ADLTEYLQKVQLGY---ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE- 279 (298)
Q Consensus 204 ~~i~~~l~~~~l~~---~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~- 279 (298)
+++.++++.+++.+ ..++ .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++
T Consensus 144 ~~~~~~l~~~gL~~~~~~~~~---------~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l 214 (623)
T PRK10261 144 VEAKRMLDQVRIPEAQTILSR---------YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214 (623)
T ss_pred HHHHHHHHHCCCCChhhHHhC---------CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence 56778899999853 2333 3789999999999999999999999999999999999999988887764
Q ss_pred ---cCcEEEEEecCcchhh
Q psy11400 280 ---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 280 ---~~~TiIiitH~l~~~~ 295 (298)
.|+|||+|||+++.+.
T Consensus 215 ~~~~g~tvi~itHdl~~~~ 233 (623)
T PRK10261 215 QKEMSMGVIFITHDMGVVA 233 (623)
T ss_pred HHhcCCEEEEEcCCHHHHH
Confidence 3899999999998764
No 273
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=3.8e-31 Score=288.52 Aligned_cols=166 Identities=25% Similarity=0.288 Sum_probs=140.6
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCC
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYM 178 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l 178 (298)
++|+|+||+|++|++++|+ ||| || |+++ + .|+++|++|+|.. +++|+|+||+|++
T Consensus 674 ~iL~~isl~i~~G~~~~Ii--------G~nGsGKSTLL~~-------i----~G~~~~~~G~i~~--~~~i~yv~Q~~~l 732 (1560)
T PTZ00243 674 VLLRDVSVSVPRGKLTVVL--------GATGSGKSTLLQS-------L----LSQFEISEGRVWA--ERSIAYVPQQAWI 732 (1560)
T ss_pred eeEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCCCCcEEEE--CCeEEEEeCCCcc
Confidence 3899999999999999999 999 99 9999 8 9999999999874 4679999999999
Q ss_pred CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFA 256 (298)
Q Consensus 179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~il 256 (298)
+++|++|||.++.. .+.++..++++.+++.+.++. ++|+++..+ .+.+|||||||||+|||||+.+|+++
T Consensus 733 ~~~Tv~enI~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~il 804 (1560)
T PTZ00243 733 MNATVRGNILFFDE--------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY 804 (1560)
T ss_pred CCCcHHHHHHcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999998641 223456667777777766655 677877654 78899999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHH-H-h-cCcEEEEEecCcchhhhc
Q psy11400 257 ILDECTSAVSVDVEGSMYEYC-R-E-VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 257 iLDEPTs~LD~~~~~~i~~~l-~-~-~~~TiIiitH~l~~~~~~ 297 (298)
|||||||+||+.+.+.+.+.+ . . .|+|+|++||+++.+.+.
T Consensus 805 lLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a 848 (1560)
T PTZ00243 805 LLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA 848 (1560)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence 999999999999888777632 2 1 489999999999887643
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=5.3e-32 Score=268.15 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=144.8
Q ss_pred CcEEEeeeeEecCC---CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 79 NLRGRLGITLGLRS---GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 79 ~~i~~~~v~~~~~~---~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
.+++++|+++.|++ +..+ +++|+||+|++|++++|+ ||| || |+++ + .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~-------il~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~ 331 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVK-------AVDNVSLEVKEGEIFGIV--------GTSGAGKTTLSKI-------I----A 331 (520)
T ss_pred ceEEEeccEEEeccCCCCCce-------EEeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence 36999999999953 2222 899999999999999999 999 99 9999 8 9
Q ss_pred cccccCCceeecc------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400 152 QLWPLFGGTVTKP------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212 (298)
Q Consensus 152 ~l~~~~~G~i~~~------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 212 (298)
|+.+|++|+|... .+++|+|+||++.++. .|+.||+.++.... .......+++.++++.
T Consensus 332 Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~l~~ 409 (520)
T TIGR03269 332 GVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE--LPDELARMKAVITLKM 409 (520)
T ss_pred CCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Confidence 9999999998641 1245999999987665 69999997642100 0001113457788999
Q ss_pred cCCch-----hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcE
Q psy11400 213 VQLGY-----ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGIT 283 (298)
Q Consensus 213 ~~l~~-----~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~T 283 (298)
+++.. +.++ ++.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|
T Consensus 410 ~~l~~~~~~~~~~~---------~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 480 (520)
T TIGR03269 410 VGFDEEKAEEILDK---------YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQT 480 (520)
T ss_pred CCCCCccchhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcE
Confidence 99863 3333 3689999999999999999999999999999999999999999888753 4899
Q ss_pred EEEEecCcchhhh
Q psy11400 284 LFTVSHRKSLWTH 296 (298)
Q Consensus 284 iIiitH~l~~~~~ 296 (298)
||+|||+++.+..
T Consensus 481 vi~vsHd~~~~~~ 493 (520)
T TIGR03269 481 FIIVSHDMDFVLD 493 (520)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999987653
No 275
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-31 Score=228.39 Aligned_cols=143 Identities=29% Similarity=0.460 Sum_probs=123.9
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++.... +++|+||++++|++++|+ ||| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~~~~~-------~l~~i~~~i~~G~~~~l~--------G~nGsGKstLl~~-------i----~G~~~~ 54 (171)
T cd03228 1 IEFKNVSFSYPGRPKP-------VLKDVSLTIKPGEKVAIV--------GPSGSGKSTLLKL-------L----LRLYDP 54 (171)
T ss_pred CEEEEEEEEcCCCCcc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCCCC
Confidence 4689999999653222 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|++... .++.++|+||++.++..|+.||+
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l-------------------------------------- 96 (171)
T cd03228 55 TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI-------------------------------------- 96 (171)
T ss_pred CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh--------------------------------------
Confidence 99987531 13569999999977777777775
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
||+|||||++||||++.+|+++||||||++||+.+...+.+++++. ++|+|++||+++.+..
T Consensus 97 ---------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 97 ---------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred ---------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 8999999999999999999999999999999999999999888653 6899999999987643
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.3e-32 Score=265.87 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=141.5
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+.+|++
T Consensus 1 ~~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~li--------G~nGsGKSTLl~~-------l----~Gl~~p~~ 52 (491)
T PRK10982 1 MSNISKSFPG-VK--------ALDNVNLKVRPHSIHALM--------GENGAGKSTLLKC-------L----FGIYQKDS 52 (491)
T ss_pred CCceEEEeCC-EE--------eeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCCCCc
Confidence 4689999953 33 899999999999999999 999 99 9999 8 99999999
Q ss_pred ceeecc------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hh-hhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 159 GTVTKP------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DM-IQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 159 G~i~~~------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~-~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
|+|... .++.++|+||++.++ ..|++||+.++.... .. .......+++.++++.+++....++
T Consensus 53 G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-- 130 (491)
T PRK10982 53 GSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRA-- 130 (491)
T ss_pred eEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccC--
Confidence 998531 135699999999765 469999998753210 00 0000112456778888888655444
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
.+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|+|+|+|||+++.+..
T Consensus 131 -------~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 131 -------KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred -------chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 3679999999999999999999999999999999999999999887765 48999999999987653
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-31 Score=229.15 Aligned_cols=141 Identities=26% Similarity=0.327 Sum_probs=123.3
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+. .. +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~~~~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~ 52 (173)
T cd03230 1 IEVRNLSKRYGK-KT--------ALDDISLTVEKGEIYGLL--------GPNGAGKTTLIKI-------I----LGLLKP 52 (173)
T ss_pred CEEEEEEEEECC-ee--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc----------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 157 FGGTVTKP----------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
++|++... .++.++|+||++.++.. |+.||+.
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------------------------------------- 95 (173)
T cd03230 53 DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------------------------- 95 (173)
T ss_pred CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------
Confidence 99987531 24579999999977654 8888762
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
||||||||++|||||+.+|++++|||||++||+.+...+.+.+++ .|.|+|++||+.+.+.
T Consensus 96 ---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 ---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred ---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 899999999999999999999999999999999999999888765 3789999999998765
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=264.53 Aligned_cols=175 Identities=22% Similarity=0.229 Sum_probs=148.7
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + .|+.
T Consensus 318 ~~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------i----~G~~ 369 (530)
T PRK15064 318 NALEVENLTKGFDN-GP--------LFKNLNLLLEAGERLAII--------GENGVGKTTLLRT-------L----VGEL 369 (530)
T ss_pred ceEEEEeeEEeeCC-ce--------eecCcEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 47999999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcCCcccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKGWDTVAD 230 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~ 230 (298)
+|++|+|....+.+++|+||++. ++ ..|+.+|+.+... .....+++.++++.+++. +..+++
T Consensus 370 ~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~-------- 435 (530)
T PRK15064 370 EPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ------EGDDEQAVRGTLGRLLFSQDDIKKS-------- 435 (530)
T ss_pred CCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc------CCccHHHHHHHHHHcCCChhHhcCc--------
Confidence 99999998766778999999974 43 3699999864210 112345678899999984 444443
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++.+.|||+|||+++.+..
T Consensus 436 -~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~ 500 (530)
T PRK15064 436 -VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSS 500 (530)
T ss_pred -ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999999999999999999999999998877899999999987653
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1e-31 Score=264.95 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=142.8
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||++++|++++|+ ||| || |+++ + +|+.+|
T Consensus 2 l~i~~l~~~~~~-~~--------il~~isl~i~~Ge~~~li--------G~nGsGKSTLl~~-------i----~G~~~~ 53 (500)
T TIGR02633 2 LEMKGIVKTFGG-VK--------ALDGIDLEVRPGECVGLC--------GENGAGKSTLMKI-------L----SGVYPH 53 (500)
T ss_pred EEEEeEEEEeCC-eE--------eecceEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 789999999953 33 899999999999999999 999 99 9999 8 898886
Q ss_pred --CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh---hhhcCCCHHHHHHHHHHcCCchh
Q psy11400 157 --FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED---MIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 157 --~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
++|+|... .++.++||||++.++. .|+.||+.++..... ........+++.++++.+++.+.
T Consensus 54 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 133 (500)
T TIGR02633 54 GTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133 (500)
T ss_pred CCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC
Confidence 79997532 1356999999997664 699999987642110 00000112456788888888643
Q ss_pred h-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 219 L-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
. ++ .+.+|||||||||+|||||+.+|+++||||||++||+.+...+.+.+++ .|+|||+|||+++.+
T Consensus 134 ~~~~---------~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~ 204 (500)
T TIGR02633 134 NVTR---------PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV 204 (500)
T ss_pred cccC---------chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 2 22 2678999999999999999999999999999999999999999888664 489999999999876
Q ss_pred hh
Q psy11400 295 TH 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 205 ~~ 206 (500)
T TIGR02633 205 KA 206 (500)
T ss_pred HH
Confidence 53
No 280
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.7e-31 Score=266.35 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=145.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+++.. +++|+||+|++|++++|+ |+| || |+++ + +|+.+
T Consensus 4 ~i~~~nls~~~~~~~~--------il~~is~~i~~Ge~~~li--------G~NGsGKSTLl~~-------i----~G~~~ 56 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE--------ILKDISLSFFPGAKIGVL--------GLNGAGKSTLLRI-------M----AGVDK 56 (552)
T ss_pred EEEEeeEEEecCCCCe--------eecCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6899999999963334 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-----h------hhcCCC--------HHHHHHHHHHcCC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-----M------IQKGIT--------DADLTEYLQKVQL 215 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-----~------~~~~~~--------~~~i~~~l~~~~l 215 (298)
|++|+|....+..|+||||+|.++. .|+.||+.++..... . ...... ..++.+.++.++.
T Consensus 57 p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 57 EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred CCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 9999997665668999999998764 699999987532100 0 000001 1223444444443
Q ss_pred chh-------hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400 216 GYI-------LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS 288 (298)
Q Consensus 216 ~~~-------~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit 288 (298)
.+. ++. -|++.....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++.+.|+|+||
T Consensus 137 ~~~~~~~~~~l~~-~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiis 215 (552)
T TIGR03719 137 WDLDRKLEIAMDA-LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVT 215 (552)
T ss_pred chhHHHHHHHHhh-CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEe
Confidence 211 111 122212235689999999999999999999999999999999999999999999988778999999
Q ss_pred cCcchhhh
Q psy11400 289 HRKSLWTH 296 (298)
Q Consensus 289 H~l~~~~~ 296 (298)
|+++.+..
T Consensus 216 Hd~~~~~~ 223 (552)
T TIGR03719 216 HDRYFLDN 223 (552)
T ss_pred CCHHHHHh
Confidence 99987653
No 281
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=6.1e-32 Score=267.71 Aligned_cols=177 Identities=21% Similarity=0.182 Sum_probs=141.7
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW-- 154 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~-- 154 (298)
++++|+++.|++ .. +++|+||++++|++++|+ ||| || |+++ + +|+.
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~ii--------G~nGsGKSTLl~~-------l----~Gl~~~ 52 (520)
T TIGR03269 1 IEVKNLTKKFDG-KE--------VLKNISFTIEEGEVLGIL--------GRSGAGKSVLMHV-------L----RGMDQY 52 (520)
T ss_pred CEEEEEEEEECC-eE--------eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhcccC
Confidence 468999999953 33 899999999999999999 999 99 9999 8 8886
Q ss_pred ccCCceeecc--------------------------------------------CCCcEEEEcCc-CCCCC-CCHHHHHc
Q psy11400 155 PLFGGTVTKP--------------------------------------------PRGKLFYVPQR-PYMTL-GTLRDQVI 188 (298)
Q Consensus 155 ~~~~G~i~~~--------------------------------------------~r~~i~~v~Q~-~~l~~-~tv~eni~ 188 (298)
+|++|+|... .++.++|+||+ +.++. .|+++|+.
T Consensus 53 ~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~ 132 (520)
T TIGR03269 53 EPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132 (520)
T ss_pred CCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHH
Confidence 6889987532 13459999998 45554 69999998
Q ss_pred cCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHH
Q psy11400 189 YPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~ 268 (298)
++...... ......+++.++++.+++.++.+++ +.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 133 ~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~ 202 (520)
T TIGR03269 133 EALEEIGY-EGKEAVGRAVDLIEMVQLSHRITHI---------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQ 202 (520)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhcC---------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHH
Confidence 75311000 0001134678889999997766553 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 269 VEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 269 ~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+...+.+++++ .|+|||+|||+++.+.
T Consensus 203 ~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 203 TAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 99998776653 4899999999998765
No 282
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-32 Score=232.18 Aligned_cols=180 Identities=21% Similarity=0.206 Sum_probs=146.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++.+++++.+|+..... +++|+|++|.+||.+.++ ||| || |+++ + +|+.+
T Consensus 3 ~l~~~~~sl~y~g~~~~-------~le~vsL~ia~ge~vv~l--------GpSGcGKTTLLnl-------~----AGf~~ 56 (259)
T COG4525 3 MLNVSHLSLSYEGKPRS-------ALEDVSLTIASGELVVVL--------GPSGCGKTTLLNL-------I----AGFVT 56 (259)
T ss_pred eeehhheEEecCCcchh-------hhhccceeecCCCEEEEE--------cCCCccHHHHHHH-------H----hcCcC
Confidence 35678899999754332 899999999999999999 999 99 9998 8 99999
Q ss_pred cCCceeeccCC------CcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400 156 LFGGTVTKPPR------GKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228 (298)
Q Consensus 156 ~~~G~i~~~~r------~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~ 228 (298)
|..|+|....| ..=|.|||++.+ +..++.||+.|+...... .+....+.+.+.+..+|+.++-++
T Consensus 57 P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi-~k~~R~~~a~q~l~~VgL~~~~~~------- 128 (259)
T COG4525 57 PSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI-EKAQRREIAHQMLALVGLEGAEHK------- 128 (259)
T ss_pred cccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhCccccccc-------
Confidence 99999875432 346899999976 467999999998643221 112223556788888999765443
Q ss_pred cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT 295 (298)
Q Consensus 229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~ 295 (298)
++.+||||||||+.|||||..+|++|+||||+++||.-+++.+.+++ ++.|+.+++|||+++.+-
T Consensus 129 --~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl 197 (259)
T COG4525 129 --YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL 197 (259)
T ss_pred --ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 36799999999999999999999999999999999999888887765 446999999999998654
No 283
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=7.7e-32 Score=240.56 Aligned_cols=163 Identities=23% Similarity=0.210 Sum_probs=130.8
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------CCCcEEEEcC
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------PRGKLFYVPQ 174 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------~r~~i~~v~Q 174 (298)
++|+||+|++|++++|+ |+| || |+++ + +|+++|++|+|... .....+|+||
T Consensus 1 l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 61 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLI--------GHSGCGKSTLLNL-------I----SGLAQPTSGGVILEGKQITEPGPDRMVVFQ 61 (230)
T ss_pred CCceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCceEEECCEECCCCChhheEEec
Confidence 47899999999999999 999 99 9999 8 99999999998632 1123689999
Q ss_pred cCCCCC-CCHHHHHccCCcc-hhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400 175 RPYMTL-GTLRDQVIYPHTK-EDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252 (298)
Q Consensus 175 ~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~ 252 (298)
++.++. .|+.||+.++... ..........+.+.++++.+++.+..+++ +.+||||||||++|||||+.+
T Consensus 62 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~ 132 (230)
T TIGR01184 62 NYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR---------PGQLSGGMKQRVAIARALSIR 132 (230)
T ss_pred CcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCC---------hhhCCHHHHHHHHHHHHHHcC
Confidence 998776 6999999764210 00000001123567889999987665543 678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 253 PQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 253 P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+.
T Consensus 133 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 133 PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999999999999999999999887754 3789999999998754
No 284
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=7e-32 Score=246.42 Aligned_cols=186 Identities=21% Similarity=0.225 Sum_probs=137.1
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|++..|+...- ..++++|+||+|++||+++|+ |.| || +.+. + .|+.+.
T Consensus 2 L~v~nL~v~f~~~~g-----~v~av~~vs~~i~~GE~lgiV--------GESGsGKS~~~~a-------i----m~llp~ 57 (316)
T COG0444 2 LEVKNLSVSFPTDAG-----VVKAVDGVSFELKKGEILGIV--------GESGSGKSVLAKA-------I----MGLLPK 57 (316)
T ss_pred ceEeeeEEEEecCCc-----cEEEEeceeEEEcCCcEEEEE--------cCCCCCHHHHHHH-------H----HhccCC
Confidence 678999998864320 112999999999999999999 999 99 5555 4 555541
Q ss_pred -----CCceeec---------------cCCCcEEEEcCcCC--C-CCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHH
Q psy11400 157 -----FGGTVTK---------------PPRGKLFYVPQRPY--M-TLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQK 212 (298)
Q Consensus 157 -----~~G~i~~---------------~~r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~ 212 (298)
.+|+|.. -+.+.|+++||+|. | +..||.+++.-........ ......+++.++|+.
T Consensus 58 ~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~ 137 (316)
T COG0444 58 PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLEL 137 (316)
T ss_pred CCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 3455431 12457999999995 3 2358888876432111000 011123568889999
Q ss_pred cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS 288 (298)
Q Consensus 213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit 288 (298)
+++.+-..+ ...++.+|||||+|||.||.||+.+|++||.||||+|||..++.+|.+++++ .|.|+|+||
T Consensus 138 Vgi~~~~~~------~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT 211 (316)
T COG0444 138 VGIPDPERR------LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT 211 (316)
T ss_pred cCCCCHHHH------HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999753222 1125899999999999999999999999999999999999999999888764 599999999
Q ss_pred cCcchhhh
Q psy11400 289 HRKSLWTH 296 (298)
Q Consensus 289 H~l~~~~~ 296 (298)
||+.++..
T Consensus 212 HDl~vva~ 219 (316)
T COG0444 212 HDLGVVAE 219 (316)
T ss_pred CCHHHHHH
Confidence 99998764
No 285
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=6.8e-32 Score=241.81 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=130.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc----------CCCcE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----------PRGKL 169 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----------~r~~i 169 (298)
+|+|+||+|++|++++|+ |+| || |+++ + +|+++|++|+|... .++++
T Consensus 36 il~~vs~~i~~Ge~~~i~--------G~NGsGKSTLl~~-------i----~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 96 (236)
T cd03267 36 ALKGISFTIEKGEIVGFI--------GPNGAGKTTTLKI-------L----SGLLQPTSGEVRVAGLVPWKRRKKFLRRI 96 (236)
T ss_pred eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcCCCceEEEECCEEccccchhhcccE
Confidence 999999999999999999 999 99 9999 8 99999999997531 24579
Q ss_pred EEEc-CcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400 170 FYVP-QRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMAR 247 (298)
Q Consensus 170 ~~v~-Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR 247 (298)
+|+| |++.++ ..|++||+.+....... ......+.+.++++.+++.+..++ .+.+||||||||++|||
T Consensus 97 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~la~ 166 (236)
T cd03267 97 GVVFGQKTQLWWDLPVIDSFYLLAAIYDL-PPARFKKRLDELSELLDLEELLDT---------PVRQLSLGQRMRAEIAA 166 (236)
T ss_pred EEEcCCccccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHH
Confidence 9998 556564 57999998754211000 000112346677888888765544 25789999999999999
Q ss_pred HHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 248 LFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 248 aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
||+.+|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+.
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999988765 2789999999998764
No 286
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-31 Score=228.59 Aligned_cols=143 Identities=23% Similarity=0.215 Sum_probs=124.3
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|+. .. +++|+||++++|++++|+ |+| || |+++ + +|+++|
T Consensus 1 i~~~~l~~~~~~-~~--------~l~~i~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~ 52 (178)
T cd03229 1 LELKNVSKRYGQ-KT--------VLNDVSLNIEAGEIVALL--------GPSGSGKSTLLRC-------I----AGLEEP 52 (178)
T ss_pred CEEEEEEEEECC-eE--------EEeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 157 FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 157 ~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
++|+|... .++.++|+||++.++. .|++||+.+.
T Consensus 53 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------- 100 (178)
T cd03229 53 DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------- 100 (178)
T ss_pred CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------
Confidence 99987421 1357999999998764 5888887541
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~ 295 (298)
||||||||++|||||+.+|+++||||||++||+.++..+.+++++ . +.|+|++||+++.+.
T Consensus 101 ------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 101 ------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred ------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 899999999999999999999999999999999999999887764 2 689999999998765
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.4e-31 Score=265.67 Aligned_cols=181 Identities=23% Similarity=0.316 Sum_probs=141.8
Q ss_pred cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+++++|+++.|+++ ... +++|+||+|++||+++|+ ||| || |+++ + +|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~~-------~l~~isl~i~~Ge~~~ii--------G~nGsGKSTLl~~-------i----~G~ 58 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRT-------VVNDVSLQIEAGETLALV--------GESGSGKSVTALS-------I----LRL 58 (529)
T ss_pred eEEEeceEEEecCCCCcee-------eeeceEEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hcC
Confidence 68999999999642 122 999999999999999999 999 99 9999 8 899
Q ss_pred ccc-----CCceeecc--------------C-CCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400 154 WPL-----FGGTVTKP--------------P-RGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210 (298)
Q Consensus 154 ~~~-----~~G~i~~~--------------~-r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 210 (298)
++| ++|+|... . +++++|+||++. ++ ..++.+|+.++.............+++.+++
T Consensus 59 ~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (529)
T PRK15134 59 LPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCL 138 (529)
T ss_pred CCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 886 68987421 1 246999999985 33 3588998864311000000111235678899
Q ss_pred HHcCCchh---hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcE
Q psy11400 211 QKVQLGYI---LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGIT 283 (298)
Q Consensus 211 ~~~~l~~~---~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~T 283 (298)
+.+++.+. .++ .+.+|||||||||+|||||+.+|++|||||||++||+.....+.+++++ .++|
T Consensus 139 ~~~gl~~~~~~~~~---------~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 209 (529)
T PRK15134 139 DRVGIRQAAKRLTD---------YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMG 209 (529)
T ss_pred HHCCCCChHHHHhh---------CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCe
Confidence 99999653 333 3689999999999999999999999999999999999999999888765 3899
Q ss_pred EEEEecCcchhh
Q psy11400 284 LFTVSHRKSLWT 295 (298)
Q Consensus 284 iIiitH~l~~~~ 295 (298)
||+|||+++.+.
T Consensus 210 vi~vtHd~~~~~ 221 (529)
T PRK15134 210 LLFITHNLSIVR 221 (529)
T ss_pred EEEEcCcHHHHH
Confidence 999999998765
No 288
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.4e-31 Score=240.87 Aligned_cols=181 Identities=22% Similarity=0.147 Sum_probs=144.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+.++++++.|.+ .. +++|+||++++|++++|+ |+| || |+++ + +|+++
T Consensus 8 ~~~~~~~~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 59 (261)
T PRK14263 8 VMDCKLDKIFYGN-FM--------AVRDSHVPIRKNEITGFI--------GPSGCGKSTVLRS-------L----NRMND 59 (261)
T ss_pred eEEEEeEEEEeCC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hcccc
Confidence 4788999999953 33 899999999999999999 999 99 9999 8 88887
Q ss_pred c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
| ++|+|... .++.++|+||++.++..|+.||+.++..... . .....+.+.++++.+++.+
T Consensus 60 p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~ 137 (261)
T PRK14263 60 LVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWD 137 (261)
T ss_pred cccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCch
Confidence 6 68987421 1356999999999888999999987532110 0 0112346788899988854
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+... ....+.+|||||+||++|||||+++|+++||||||++||+.++..+.+++++ .+.|+|++||+++.+.
T Consensus 138 ~i~~~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~ 212 (261)
T PRK14263 138 EVKDK-----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAI 212 (261)
T ss_pred hhhhh-----hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 33210 1124678999999999999999999999999999999999999999998876 3689999999998654
No 289
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=264.75 Aligned_cols=183 Identities=17% Similarity=0.182 Sum_probs=143.2
Q ss_pred CcEEEeeeeEecCC-CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 79 NLRGRLGITLGLRS-GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 79 ~~i~~~~v~~~~~~-~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.+++++|+++.|+. +..+ +++|+||+|++|++++|+ |+| || |+++ + .|+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~-------vl~~vsl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------i----~Gl 311 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIK-------RVDDVSFSLRRGEILGIA--------GLVGAGRTELVQC-------L----FGA 311 (506)
T ss_pred ceEEEecCccccccccccc-------cccceeeEEcCCcEEEEe--------CCCCCCHHHHHHH-------H----hCC
Confidence 36899999999953 1222 899999999999999999 999 99 9999 8 999
Q ss_pred cc-cCCceeecc------------CCCcEEEEcCcC---CCC-CCCHHHHHccCCcchh-h---hhcCCCHHHHHHHHHH
Q psy11400 154 WP-LFGGTVTKP------------PRGKLFYVPQRP---YMT-LGTLRDQVIYPHTKED-M---IQKGITDADLTEYLQK 212 (298)
Q Consensus 154 ~~-~~~G~i~~~------------~r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~-~---~~~~~~~~~i~~~l~~ 212 (298)
.+ |++|+|... .+..++|+||++ .++ ..|+.||+.++..... . .......+++.++++.
T Consensus 312 ~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 391 (506)
T PRK13549 312 YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR 391 (506)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHh
Confidence 88 589998631 134599999996 344 4699999987531100 0 0000112457788899
Q ss_pred cCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEe
Q psy11400 213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVS 288 (298)
Q Consensus 213 ~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiit 288 (298)
+++. +..++ .+.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+++++ .|+|||++|
T Consensus 392 ~~l~~~~~~~---------~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s 462 (506)
T PRK13549 392 LKVKTASPEL---------AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462 (506)
T ss_pred cCccCCCccc---------ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 9885 34444 3679999999999999999999999999999999999999988887653 489999999
Q ss_pred cCcchhhh
Q psy11400 289 HRKSLWTH 296 (298)
Q Consensus 289 H~l~~~~~ 296 (298)
|+++.+..
T Consensus 463 Hd~~~~~~ 470 (506)
T PRK13549 463 SELPEVLG 470 (506)
T ss_pred CCHHHHHH
Confidence 99987653
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.2e-31 Score=266.05 Aligned_cols=182 Identities=19% Similarity=0.177 Sum_probs=143.1
Q ss_pred CcEEEeeeeEecCCC---------CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccc
Q psy11400 79 NLRGRLGITLGLRSG---------GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMT 145 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~---------~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~ 145 (298)
.+++++|+++.|+.+ ... +|+|+||+|++|++++|+ ||| || |+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~-------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLlk~------- 331 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNV-------VVKNISFTLRPGETLGLV--------GESGSGKSTTGLA------- 331 (529)
T ss_pred CcccccCcEEEeecCccccccccccce-------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------
Confidence 368999999999521 122 899999999999999999 999 99 9999
Q ss_pred cccccccccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchh-hhhcCCCHHHHH
Q psy11400 146 LGTLRDQLWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKED-MIQKGITDADLT 207 (298)
Q Consensus 146 l~~~~~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~-~~~~~~~~~~i~ 207 (298)
+ .|+++ ++|+|... .+++++|+||++. ++ ..|+.||+.++..... ........+++.
T Consensus 332 l----~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 406 (529)
T PRK15134 332 L----LRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406 (529)
T ss_pred H----hCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence 8 88885 88987531 1346999999983 44 4699999987521100 000011234577
Q ss_pred HHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCc
Q psy11400 208 EYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGI 282 (298)
Q Consensus 208 ~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~ 282 (298)
++++.+++. +..+++ +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|+
T Consensus 407 ~~l~~~~l~~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 477 (529)
T PRK15134 407 AVMEEVGLDPETRHRY---------PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQL 477 (529)
T ss_pred HHHHHcCCCHHHHhcC---------CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCC
Confidence 889999986 345543 679999999999999999999999999999999999999999888764 379
Q ss_pred EEEEEecCcchhhh
Q psy11400 283 TLFTVSHRKSLWTH 296 (298)
Q Consensus 283 TiIiitH~l~~~~~ 296 (298)
|||+|||+++.+..
T Consensus 478 tvi~vsHd~~~~~~ 491 (529)
T PRK15134 478 AYLFISHDLHVVRA 491 (529)
T ss_pred EEEEEeCCHHHHHH
Confidence 99999999987753
No 291
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.9e-31 Score=239.37 Aligned_cols=159 Identities=25% Similarity=0.228 Sum_probs=130.4
Q ss_pred ceeeeeEEEe-----CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcC
Q psy11400 104 SFFDYMFGVR-----GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQ 174 (298)
Q Consensus 104 ~l~~isl~i~-----~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q 174 (298)
.+.|++|+++ +||+++|+ |+| || |+++ + +|+.+|++|+|..... .|+|+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~--------G~NGsGKSTLlk~-------L----~G~~~p~~G~i~~~g~-~i~~~~q 68 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGIL--------GPNGIGKTTFIKM-------L----AGVLKPDEGDIEIELD-TVSYKPQ 68 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCcCCCCeEEECCc-eEEEecc
Confidence 6788888886 79999999 999 99 9999 8 9999999999976443 7999999
Q ss_pred cCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC
Q psy11400 175 RPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP 253 (298)
Q Consensus 175 ~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P 253 (298)
++.. +..|+.||+.+.... .........++++.+++.+..+++ +.+||||||||++|||||+.+|
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~l~l~~~~~~~---------~~~LSgGe~qrv~iaraL~~~p 134 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKD-----FYTHPYFKTEIAKPLQIEQILDRE---------VPELSGGELQRVAIAACLSKDA 134 (246)
T ss_pred cccCCCCCCHHHHHHHHhhh-----ccccHHHHHHHHHHcCCHHHhhCC---------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9874 578999998653210 011123456788888887665543 6789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 254 QFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 254 ~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+..
T Consensus 135 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999988887765 37999999999987653
No 292
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=2e-31 Score=262.18 Aligned_cols=170 Identities=19% Similarity=0.139 Sum_probs=141.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++|+++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~li--------G~nGsGKSTLl~~-------l----~G~~~ 54 (490)
T PRK10938 3 SLQISQGTFRLSD-TK--------TLQLPSLTLNAGDSWAFV--------GANGSGKSALARA-------L----AGELP 54 (490)
T ss_pred eEEEEeEEEEcCC-ee--------ecccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC-----------CCcEEEEcCcCCC--C-------CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 156 LFGGTVTKPP-----------RGKLFYVPQRPYM--T-------LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
|++|+|.... ++.++|+||++.+ + ..|+++++.++. ...+++.++++.+++
T Consensus 55 p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~l 125 (490)
T PRK10938 55 LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---------KDPARCEQLAQQFGI 125 (490)
T ss_pred CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccch---------hHHHHHHHHHHHcCC
Confidence 9999985311 2359999998743 1 347777765421 124567889999999
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
.+..+++ +.+||||||||++|||||+.+|+++||||||++||+.....+.+++++ .|+|+|+|||+++
T Consensus 126 ~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 126 TALLDRR---------FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred HhhhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 7766553 679999999999999999999999999999999999999999888765 3789999999998
Q ss_pred hhh
Q psy11400 293 LWT 295 (298)
Q Consensus 293 ~~~ 295 (298)
.+.
T Consensus 197 ~~~ 199 (490)
T PRK10938 197 EIP 199 (490)
T ss_pred HHH
Confidence 764
No 293
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=263.55 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=142.0
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.| .. +++|+||+|++|++++|+ ||| || |+++ + +|++
T Consensus 264 ~~l~~~~l~~~~---~~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------i----~Gl~ 313 (510)
T PRK09700 264 TVFEVRNVTSRD---RK--------KVRDISFSVCRGEILGFA--------GLVGSGRTELMNC-------L----FGVD 313 (510)
T ss_pred cEEEEeCccccC---CC--------cccceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 368999999865 22 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccC------------CCcEEEEcCcC---CCC-CCCHHHHHccCCcch--hh------hhcCCCHHHHHHHH
Q psy11400 155 PLFGGTVTKPP------------RGKLFYVPQRP---YMT-LGTLRDQVIYPHTKE--DM------IQKGITDADLTEYL 210 (298)
Q Consensus 155 ~~~~G~i~~~~------------r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~~--~~------~~~~~~~~~i~~~l 210 (298)
+|++|+|.... +++++|+||++ .++ ..|++||+.++.... .. .......+++.+++
T Consensus 314 ~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (510)
T PRK09700 314 KRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR 393 (510)
T ss_pred cCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHH
Confidence 99999985321 34699999984 344 469999998753210 00 00001123567888
Q ss_pred HHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400 211 QKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT 286 (298)
Q Consensus 211 ~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi 286 (298)
+.+++. +..++ .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+
T Consensus 394 ~~~~l~~~~~~~---------~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 464 (510)
T PRK09700 394 ELLALKCHSVNQ---------NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM 464 (510)
T ss_pred HhcCCCCCCccC---------ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 888885 44444 3679999999999999999999999999999999999999999888764 4899999
Q ss_pred EecCcchhhh
Q psy11400 287 VSHRKSLWTH 296 (298)
Q Consensus 287 itH~l~~~~~ 296 (298)
|||+++.+..
T Consensus 465 vsHd~~~~~~ 474 (510)
T PRK09700 465 VSSELPEIIT 474 (510)
T ss_pred EcCCHHHHHh
Confidence 9999987653
No 294
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=6.3e-31 Score=237.26 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=139.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-- 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-- 153 (298)
+++++|+++.|++ .. +|+|+||+|++||+++|+ |+| || |+++ + +|+
T Consensus 7 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~~ 58 (252)
T CHL00131 7 ILEIKNLHASVNE-NE--------ILKGLNLSINKGEIHAIM--------GPNGSGKSTLSKV-------I----AGHPA 58 (252)
T ss_pred eEEEEeEEEEeCC-EE--------eeecceeEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCc
Confidence 5899999999963 33 899999999999999999 999 99 9999 8 887
Q ss_pred cccCCceeecc----------CCC--cEEEEcCcCCCCC-CCHHHHHccCCcchhhh-h-cCCC----HHHHHHHHHHcC
Q psy11400 154 WPLFGGTVTKP----------PRG--KLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-Q-KGIT----DADLTEYLQKVQ 214 (298)
Q Consensus 154 ~~~~~G~i~~~----------~r~--~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~-~~~~----~~~i~~~l~~~~ 214 (298)
++|++|+|... .+. .++|+||++.++. .|+.+|+.+........ . .... .+.+.++++.++
T Consensus 59 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (252)
T CHL00131 59 YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138 (252)
T ss_pred CcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 67899987531 112 4889999998775 48899886532110000 0 0011 234677888888
Q ss_pred Cc-hhhhhcCCcccccccCC-CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400 215 LG-YILNREKGWDTVADWID-VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH 289 (298)
Q Consensus 215 l~-~~~~~~~g~d~~~~~~~-~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH 289 (298)
+. ...+++ +. .||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||
T Consensus 139 l~~~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 139 MDPSFLSRN---------VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred Cchhhhccc---------cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 86 344432 44 5999999999999999999999999999999999999999888765 3899999999
Q ss_pred Ccchhh
Q psy11400 290 RKSLWT 295 (298)
Q Consensus 290 ~l~~~~ 295 (298)
+++.+.
T Consensus 210 ~~~~~~ 215 (252)
T CHL00131 210 YQRLLD 215 (252)
T ss_pred CHHHHH
Confidence 998765
No 295
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=3.2e-31 Score=230.76 Aligned_cols=148 Identities=25% Similarity=0.268 Sum_probs=126.6
Q ss_pred cEEEeeeeEecCCC----CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 80 LRGRLGITLGLRSG----GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 80 ~i~~~~v~~~~~~~----~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
.++++||++.|+.. ..+ +++|+||++++|++++|+ ||| || |+++ + +
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~-------~l~~~~~~i~~Ge~~~l~--------G~nGsGKStLl~~-------i----~ 56 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ-------LLKNVSGKAKPGELTAIM--------GPSGAGKSTLLNA-------L----A 56 (194)
T ss_pred EEEEEeeEEEEecCCCccccc-------ceecceEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence 37899999999742 122 999999999999999999 999 99 9999 8 9
Q ss_pred ccc--ccCCceeecc--------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 152 QLW--PLFGGTVTKP--------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 152 ~l~--~~~~G~i~~~--------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++ +|++|+|... .++.++|+||++.++. .|++||+.++. .+
T Consensus 57 Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------------~~-------------- 109 (194)
T cd03213 57 GRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA-------------KL-------------- 109 (194)
T ss_pred CCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH-------------Hh--------------
Confidence 999 9999998532 3567999999998765 59999986521 00
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++
T Consensus 110 ------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 110 ------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 05999999999999999999999999999999999999999888765 3789999999986
No 296
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=9.6e-32 Score=223.27 Aligned_cols=178 Identities=26% Similarity=0.281 Sum_probs=142.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++|+.+.|...+ +|.||+|+-+.||.+.+. ||| || |+|. + .-+.-
T Consensus 2 sirv~~in~~yg~~q---------~lfdi~l~~~~getlvll--------gpsgagkssllr~-------l----nlle~ 53 (242)
T COG4161 2 SIQLNGINCFYGAHQ---------ALFDITLDCPEGETLVLL--------GPSGAGKSSLLRV-------L----NLLEM 53 (242)
T ss_pred ceEEcccccccccch---------heeeeeecCCCCCEEEEE--------CCCCCchHHHHHH-------H----HHHhC
Confidence 488999999996433 899999999999999999 999 99 8877 5 44555
Q ss_pred cCCceeec-----------------cCCCcEEEEcCcCCCCC-CCHHHHHccC-CcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 156 LFGGTVTK-----------------PPRGKLFYVPQRPYMTL-GTLRDQVIYP-HTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 156 ~~~G~i~~-----------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~-~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
|.+|+... ..|+++|+|||+..+++ .|+.||+.-. ...... .+.....+..++++.+.+.
T Consensus 54 p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl-~~~qa~~~a~ellkrlrl~ 132 (242)
T COG4161 54 PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGL-SKDQALARAEKLLKRLRLK 132 (242)
T ss_pred CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCC-CHHHHHHHHHHHHHHhccc
Confidence 78887531 23678999999988864 7999998743 211111 1111234567888888888
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
++.++ |+-.|||||+|||+|||||+.+|++|++||||++|||+...++.+.+++ -|+|-+++||..+.
T Consensus 133 ~~adr---------~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 133 PYADR---------YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred ccccc---------CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 77766 5789999999999999999999999999999999999998888888776 48999999999887
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
++
T Consensus 204 a~ 205 (242)
T COG4161 204 AR 205 (242)
T ss_pred HH
Confidence 65
No 297
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=230.00 Aligned_cols=179 Identities=23% Similarity=0.281 Sum_probs=146.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+++++++++|. ... +++|+||++++||+++|+ ||| || ++++ + .|+|+
T Consensus 4 lL~v~~l~k~FG--Gl~-------Al~~Vsl~v~~Gei~~LI--------GPNGAGKTTlfNl-------i----tG~~~ 55 (250)
T COG0411 4 LLEVRGLSKRFG--GLT-------AVNDVSLEVRPGEIVGLI--------GPNGAGKTTLFNL-------I----TGFYK 55 (250)
T ss_pred eeeeccceeecC--CEE-------EEeceeEEEcCCeEEEEE--------CCCCCCceeeeee-------e----ccccc
Confidence 478999999994 332 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch----hhhh-------cCCCHHHHHHHHH
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE----DMIQ-------KGITDADLTEYLQ 211 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~----~~~~-------~~~~~~~i~~~l~ 211 (298)
|++|+|... .+..|+--||.+.+|. .|+.||+..+.... .... .....+++.++|+
T Consensus 56 P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 56 PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135 (250)
T ss_pred CCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHH
Confidence 999998632 2456889999998875 69999998763211 0000 0112356788899
Q ss_pred HcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 212 ~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
.++|.+..+++ ..+||+|||+|+.|||||+.+|++|+||||.+||.+.....+.+.+++ .|.|+++|
T Consensus 136 ~vgL~~~a~~~---------A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI 206 (250)
T COG0411 136 FVGLGELADRP---------AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206 (250)
T ss_pred HcCCchhhcch---------hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 99998887765 569999999999999999999999999999999999888887777654 36999999
Q ss_pred ecCcchhh
Q psy11400 288 SHRKSLWT 295 (298)
Q Consensus 288 tH~l~~~~ 295 (298)
.||++++.
T Consensus 207 EHdM~~Vm 214 (250)
T COG0411 207 EHDMKLVM 214 (250)
T ss_pred EeccHHHh
Confidence 99999765
No 298
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=3.4e-31 Score=261.19 Aligned_cols=182 Identities=20% Similarity=0.194 Sum_probs=142.0
Q ss_pred cEEEeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 80 LRGRLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+++++|+++.|+.+ ... +++|+||+|++||+++|+ ||| || |+++ + +|+.
T Consensus 257 ~l~~~~l~~~~~~~~~~~-------~l~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~G~~ 310 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRK-------RVDDVSFSLRRGEILGVA--------GLVGAGRTELVQA-------L----FGAY 310 (500)
T ss_pred eEEEeCCccccccccccc-------ccccceeEEeCCcEEEEe--------CCCCCCHHHHHHH-------H----hCCC
Confidence 68999999988422 222 899999999999999999 999 99 9999 8 9998
Q ss_pred cc-CCceeecc------------CCCcEEEEcCcC---CCC-CCCHHHHHccCCcchh-h---hhcCCCHHHHHHHHHHc
Q psy11400 155 PL-FGGTVTKP------------PRGKLFYVPQRP---YMT-LGTLRDQVIYPHTKED-M---IQKGITDADLTEYLQKV 213 (298)
Q Consensus 155 ~~-~~G~i~~~------------~r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~-~---~~~~~~~~~i~~~l~~~ 213 (298)
+| ++|+|... .+++++|+||++ .++ ..|+++|+.++..... . .......+++.++++.+
T Consensus 311 ~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (500)
T TIGR02633 311 PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL 390 (500)
T ss_pred CCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc
Confidence 85 89998531 135699999996 344 4699999987531100 0 00001124577888988
Q ss_pred CCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400 214 QLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH 289 (298)
Q Consensus 214 ~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH 289 (298)
++.+ ..++ ++.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|.|||++||
T Consensus 391 ~l~~~~~~~---------~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH 461 (500)
T TIGR02633 391 KVKTASPFL---------PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSS 461 (500)
T ss_pred CccCCCccC---------ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 8853 3333 3679999999999999999999999999999999999999988876654 4899999999
Q ss_pred Ccchhhh
Q psy11400 290 RKSLWTH 296 (298)
Q Consensus 290 ~l~~~~~ 296 (298)
+++.+..
T Consensus 462 d~~~~~~ 468 (500)
T TIGR02633 462 ELAEVLG 468 (500)
T ss_pred CHHHHHH
Confidence 9987753
No 299
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=6.7e-31 Score=226.40 Aligned_cols=142 Identities=26% Similarity=0.324 Sum_probs=123.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.| +++++||++++|++++|+ |+| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~~-------------~l~~vs~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 51 (182)
T cd03215 4 VLEVRGLSVKG-------------AVRDVSFEVRAGEIVGIA--------GLVGNGQTELAEA-------L----FGLRP 51 (182)
T ss_pred EEEEeccEEEe-------------eecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 58999999987 589999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcC---CC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRP---YM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~---~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|++... .+++++|+||++ .+ +..|++||+.++. .
T Consensus 52 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-------~-------------------- 104 (182)
T cd03215 52 PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-------L-------------------- 104 (182)
T ss_pred CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh-------h--------------------
Confidence 999987531 145799999985 34 4569999987531 0
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
||||||||++||||++.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+.
T Consensus 105 ---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 105 ---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred ---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 899999999999999999999999999999999999999888765 3799999999997664
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.4e-30 Score=259.84 Aligned_cols=178 Identities=20% Similarity=0.193 Sum_probs=146.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + .|+.
T Consensus 321 ~~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~G~~ 372 (552)
T TIGR03719 321 KVIEAENLSKGFGD-KL--------LIDDLSFKLPPGGIVGVI--------GPNGAGKSTLFRM-------I----TGQE 372 (552)
T ss_pred eEEEEeeEEEEECC-ee--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence 46999999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCC-CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCccccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPY-MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADW 231 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~ 231 (298)
+|++|+|......+|+|+||++. ++ ..|+.||+.++..... .........++++.+++.. ..++ .
T Consensus 373 ~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~---------~ 440 (552)
T TIGR03719 373 QPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKREVPSRAYVGRFNFKGSDQQK---------K 440 (552)
T ss_pred CCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcchHHHHHHHHhCCCChhHhcC---------c
Confidence 99999997643346999999973 44 4699999987542110 0111234567888888853 3343 3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+.+|||||||||+|||||+.+|+++||||||++||+.+...+.+++++.+.|+|+|||+++.+..
T Consensus 441 ~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~ 505 (552)
T TIGR03719 441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDR 505 (552)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 67999999999999999999999999999999999999999999999876699999999987653
No 301
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=1.4e-30 Score=234.24 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=133.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-- 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-- 153 (298)
+++++|+++.|++ .. +++|+||+|++|++++|+ |+| || |+++ + +|+
T Consensus 1 ~i~~~nl~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 52 (248)
T PRK09580 1 MLSIKDLHVSVED-KA--------ILRGLNLEVRPGEVHAIM--------GPNGSGKSTLSAT-------L----AGRED 52 (248)
T ss_pred CeEEEEEEEEeCC-ee--------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCcc
Confidence 3789999999963 33 899999999999999999 999 99 9999 8 888
Q ss_pred cccCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCc-chhh-hhcCCC----HHHHHHHHHHcC
Q psy11400 154 WPLFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHT-KEDM-IQKGIT----DADLTEYLQKVQ 214 (298)
Q Consensus 154 ~~~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~-~~~~~~----~~~i~~~l~~~~ 214 (298)
++|++|+|... .+..++|++|++.++.. +..+++.+... .... ...... .+.+.++++.++
T Consensus 53 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (248)
T PRK09580 53 YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132 (248)
T ss_pred CCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC
Confidence 46899987531 12459999999876543 54444322110 0000 000011 234566777777
Q ss_pred Cc-hhhhhcCCcccccccC-CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400 215 LG-YILNREKGWDTVADWI-DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH 289 (298)
Q Consensus 215 l~-~~~~~~~g~d~~~~~~-~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH 289 (298)
+. ++.+++ + .+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||
T Consensus 133 l~~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH 203 (248)
T PRK09580 133 MPEDLLTRS---------VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203 (248)
T ss_pred CChhhcccC---------CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 74 233221 3 37999999999999999999999999999999999999998887654 4789999999
Q ss_pred Ccchhhh
Q psy11400 290 RKSLWTH 296 (298)
Q Consensus 290 ~l~~~~~ 296 (298)
+++.+..
T Consensus 204 ~~~~~~~ 210 (248)
T PRK09580 204 YQRILDY 210 (248)
T ss_pred CHHHHHh
Confidence 9887654
No 302
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=4.5e-31 Score=235.45 Aligned_cols=163 Identities=22% Similarity=0.225 Sum_probs=129.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc----CCceeecc--------C-C
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL----FGGTVTKP--------P-R 166 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~----~~G~i~~~--------~-r 166 (298)
+++|+||+|++|++++|+ ||| || |+++ + +|+++| ++|+|... . +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~ 61 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALV--------GESGSGKSLTCLA-------I----LGLLPPGLTQTSGEILLDGRPLLPLSIRG 61 (230)
T ss_pred CccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCccCccccEEEECCEechhhhhhh
Confidence 578999999999999999 999 99 9999 8 999998 89998532 1 3
Q ss_pred CcEEEEcCcCC--CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc---hhhhhcCCcccccccCCCCChhHH
Q psy11400 167 GKLFYVPQRPY--MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG---YILNREKGWDTVADWIDVLSGGEK 240 (298)
Q Consensus 167 ~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~---~~~~~~~g~d~~~~~~~~LSgGqk 240 (298)
+.++|+||++. ++. .|+.+|+.+....... ......+++.++++.+++. +..++ .+.+||||||
T Consensus 62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~G~~ 131 (230)
T TIGR02770 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEEVLKK---------YPFQLSGGML 131 (230)
T ss_pred heeEEEecCchhhcCcccCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHcCCCchHHHHhC---------ChhhcCHHHH
Confidence 47999999984 333 5899988653210000 0011234578889999986 33333 3679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
|||+|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVA 190 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999988887764 3789999999998764
No 303
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-30 Score=228.46 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=125.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+.++||+|.|+.++. ...+++|+||+|++|++++|+ |+| || |+++ + +|+++
T Consensus 3 ~~~~~~~~~~~~~~~~-----~~~il~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~ 58 (202)
T cd03233 3 TLSWRNISFTTGKGRS-----KIPILKDFSGVVKPGEMVLVL--------GRPGSGCSTLLKA-------L----ANRTE 58 (202)
T ss_pred eEEEEccEEEeccCCC-----CceeeeeEEEEECCCcEEEEE--------CCCCCCHHHHHHH-------h----cccCC
Confidence 3689999999986421 012999999999999999999 999 99 9999 8 99998
Q ss_pred ---cCCceeec----------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 ---LFGGTVTK----------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ---~~~G~i~~----------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|+|.. ..++.++|+||++.++. .|++||+.+... .. .+
T Consensus 59 ~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~--------~~----------------~~- 113 (202)
T cd03233 59 GNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR--------CK----------------GN- 113 (202)
T ss_pred CCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh--------hc----------------cc-
Confidence 88998752 12457999999997765 699999976421 00 11
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEe-cCcchh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVS-HRKSLW 294 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiit-H~l~~~ 294 (298)
.++..||+|||||++|||||+++|+++||||||++||+.+++.+.+.+++ . +.|+|+++ |+.+.+
T Consensus 114 --------~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 114 --------EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI 183 (202)
T ss_pred --------cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH
Confidence 13568999999999999999999999999999999999999999888765 2 56766655 554443
No 304
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.8e-31 Score=227.30 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=125.3
Q ss_pred cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.++++|+++.|+++ ..+ +++|+||++++|++++|+ |+| || |+++ + +|+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~-------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~ 56 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQ-------LLNNISGYVKPGTLTALM--------GESGAGKTTLLDV-------L----AGR 56 (192)
T ss_pred EEEEeeeEEEecCCCCceE-------eEEccEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 47899999999642 122 899999999999999999 999 99 9999 7 887
Q ss_pred c--ccCCceeecc-------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 154 W--PLFGGTVTKP-------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 154 ~--~~~~G~i~~~-------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
. +|++|++... .++.++|++|++.++. .|+++|+.++. .++
T Consensus 57 ~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-----------------~~~------------ 107 (192)
T cd03232 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSA-----------------LLR------------ 107 (192)
T ss_pred CcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHH-----------------HHh------------
Confidence 5 4789998532 2457999999997765 59999987531 000
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
+||||||||++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++
T Consensus 108 ----------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 108 ----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred ----------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 5999999999999999999999999999999999999999888765 3799999999987
No 305
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=4e-31 Score=235.13 Aligned_cols=176 Identities=22% Similarity=0.202 Sum_probs=133.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
+.++|+++.|.+ .. +++|+||+|++|++++|+ |+| || |+++ + +|+++|
T Consensus 23 l~~~~~~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~p 74 (224)
T cd03220 23 LGILGRKGEVGE-FW--------ALKDVSFEVPRGERIGLI--------GRNGAGKSTLLRL-------L----AGIYPP 74 (224)
T ss_pred hhhhhhhhhcCC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 567778877743 33 999999999999999999 999 99 9999 8 999999
Q ss_pred CCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCC
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~L 235 (298)
++|+|..... .+.+..+...+ +..|++||+.++...... ......+++.++++.+++.+..+++ +.+|
T Consensus 75 ~~G~i~~~g~-~~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~L 143 (224)
T cd03220 75 DSGTVTVRGR-VSSLLGLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLP---------VKTY 143 (224)
T ss_pred CceEEEECCE-EchhhcccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCC---------hhhC
Confidence 9999875432 12222222323 457999999764211000 0011123566778888887655543 5789
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
|||||||++|||||+++|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+.
T Consensus 144 SgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~ 206 (224)
T cd03220 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIK 206 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988887764 3789999999998764
No 306
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.7e-30 Score=259.31 Aligned_cols=178 Identities=20% Similarity=0.188 Sum_probs=146.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +|+|+||+|++|++++|+ |+| || |+++ + .|+.
T Consensus 323 ~~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLl~~-------i----~G~~ 374 (556)
T PRK11819 323 KVIEAENLSKSFGD-RL--------LIDDLSFSLPPGGIVGII--------GPNGAGKSTLFKM-------I----TGQE 374 (556)
T ss_pred eEEEEEeEEEEECC-ee--------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 47999999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcC-CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCccccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRP-YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADW 231 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~ 231 (298)
+|++|+|......+|||+||++ .++ ..|+++|+.++..... ..........+++.+++.. ..++ .
T Consensus 375 ~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~---------~ 442 (556)
T PRK11819 375 QPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNREIPSRAYVGRFNFKGGDQQK---------K 442 (556)
T ss_pred CCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccccHHHHHHHHHhCCCChhHhcC---------c
Confidence 9999999764334699999997 454 4699999987532110 0112334567888888853 3343 3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++...|+|+|||+++.+..
T Consensus 443 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~ 507 (556)
T PRK11819 443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDR 507 (556)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 67999999999999999999999999999999999999999999998875699999999987643
No 307
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=227.94 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=141.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++..|.. .. +|+++||++++||+++++ |+| || +++. + .|+.+
T Consensus 3 mL~v~~l~~~YG~--~~-------~L~gvsl~v~~Geiv~ll--------G~NGaGKTTlLkt-------i----~Gl~~ 54 (237)
T COG0410 3 MLEVENLSAGYGK--IQ-------ALRGVSLEVERGEIVALL--------GRNGAGKTTLLKT-------I----MGLVR 54 (237)
T ss_pred ceeEEeEeecccc--ee-------EEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6899999999953 32 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcC-Cchhhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~ 221 (298)
+.+|+|... .+..|+||||.-.+|. .||.||+..+...... .......++++.+.+. |.+..++
T Consensus 55 ~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~ 132 (237)
T COG0410 55 PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQ 132 (237)
T ss_pred CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcC
Confidence 999998631 2567999999998775 6999999976432110 0111122666666664 3333333
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+..+|||||||.++|||||+.+|++|+|||||.||-|...+.|.+.+++ .+.||++|.++...+.
T Consensus 133 ---------~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 133 ---------RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred ---------cccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 4679999999999999999999999999999999999988888877654 3779999999877554
No 308
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=6.1e-31 Score=255.74 Aligned_cols=186 Identities=23% Similarity=0.250 Sum_probs=141.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|.... .+..+++|+||+|.+||+++|+ |.| || +.+. + .|+.+
T Consensus 5 lL~V~nL~v~~~~~~-----~~~~~v~~vsf~v~~GE~lgIv--------GESGsGKSt~a~~-------i----~gll~ 60 (539)
T COG1123 5 LLEVENLTVEFATDG-----GRVPAVRDVSFEVEPGEILGIV--------GESGSGKSTLALA-------L----MGLLP 60 (539)
T ss_pred eEEEeceEEEEecCC-----cceeeeecceEEecCCcEEEEE--------cCCCCCHHHHHHH-------H----hccCC
Confidence 689999999996432 1123999999999999999999 999 99 6665 5 66666
Q ss_pred cC----Cceeecc---------------CCCcEEEEcCcCC--CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400 156 LF----GGTVTKP---------------PRGKLFYVPQRPY--MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213 (298)
Q Consensus 156 ~~----~G~i~~~---------------~r~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 213 (298)
+. +|+|... ..+.|+|+||+|. +-+ .|+.++|.-..............+++.++++.+
T Consensus 61 ~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V 140 (539)
T COG1123 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140 (539)
T ss_pred CCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc
Confidence 55 6887321 2367999999995 323 588888863221110000112345678899999
Q ss_pred CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH 289 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH 289 (298)
++.+-..+ ..++++||||||||+.||+||+.+|++||+||||++||+.++.+|++++++ .|+++|+|||
T Consensus 141 gl~~~~~~-------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH 213 (539)
T COG1123 141 GLPDPERR-------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213 (539)
T ss_pred CCCChhhh-------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC
Confidence 99754322 225899999999999999999999999999999999999999999988764 5999999999
Q ss_pred Ccchhhh
Q psy11400 290 RKSLWTH 296 (298)
Q Consensus 290 ~l~~~~~ 296 (298)
|+..+..
T Consensus 214 Dl~Vva~ 220 (539)
T COG1123 214 DLGVVAE 220 (539)
T ss_pred CHHHHHH
Confidence 9998764
No 309
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=225.79 Aligned_cols=179 Identities=21% Similarity=0.195 Sum_probs=140.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+.+.|... . +|+++||+-++|+.+.|+ |.| || ++++ + .-+..
T Consensus 6 ~l~v~dlHK~~G~~-e--------VLKGvSL~A~~GdVisII--------GsSGSGKSTfLRC-------i----N~LE~ 57 (256)
T COG4598 6 ALEVEDLHKRYGEH-E--------VLKGVSLQANAGDVISII--------GSSGSGKSTFLRC-------I----NFLEK 57 (256)
T ss_pred ceehhHHHhhcccc-h--------hhcceeeecCCCCEEEEe--------cCCCCchhHHHHH-------H----HhhcC
Confidence 58899999999532 2 899999999999999999 999 99 8888 6 66777
Q ss_pred cCCceeec------------------------cCCCcEEEEcCcCCCCC-CCHHHHHccCC-cchhhhhcCCCHHHHHHH
Q psy11400 156 LFGGTVTK------------------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPH-TKEDMIQKGITDADLTEY 209 (298)
Q Consensus 156 ~~~G~i~~------------------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~i~~~ 209 (298)
|..|.|.. ..|.+.++|||+..++. +|+.||+.-.. ..... .+....++...+
T Consensus 58 P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~-~k~ea~e~Ae~~ 136 (256)
T COG4598 58 PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV-SKAEAIERAEKY 136 (256)
T ss_pred CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC-CHHHHHHHHHHH
Confidence 88888631 12567999999999874 79999987431 11100 111123556777
Q ss_pred HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEE
Q psy11400 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFT 286 (298)
Q Consensus 210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIi 286 (298)
|..+|+.+-.+. ++..|||||+||++|||||+.+|+++++|||||+|||+...++++.++ +.|+|+++
T Consensus 137 L~kVGi~ek~~~---------YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~ 207 (256)
T COG4598 137 LAKVGIAEKADA---------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVV 207 (256)
T ss_pred HHHhCchhhhhc---------CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 888888654443 478999999999999999999999999999999999987776655443 45999999
Q ss_pred EecCcchhhh
Q psy11400 287 VSHRKSLWTH 296 (298)
Q Consensus 287 itH~l~~~~~ 296 (298)
|||.+..++.
T Consensus 208 VTHEM~FAR~ 217 (256)
T COG4598 208 VTHEMGFARD 217 (256)
T ss_pred EeeehhHHHh
Confidence 9999987764
No 310
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=2.3e-30 Score=259.38 Aligned_cols=172 Identities=23% Similarity=0.196 Sum_probs=145.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|.+ . .|+++||+|++||+++|+ ||| || |+++ | +|+.
T Consensus 339 ~~l~~~~ls~~~~~--~--------~l~~~s~~i~~Geiv~l~--------G~NGsGKSTLlk~-------L----~Gl~ 389 (590)
T PRK13409 339 TLVEYPDLTKKLGD--F--------SLEVEGGEIYEGEVIGIV--------GPNGIGKTTFAKL-------L----AGVL 389 (590)
T ss_pred eEEEEcceEEEECC--E--------EEEecceEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 36899999999942 3 689999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~ 233 (298)
+|++|+|... .+++|+||++.+ +..|+++|+.++... .. ....+.++++.+++.+..+++ +.
T Consensus 390 ~p~~G~I~~~--~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~-~~~~~~~~L~~l~l~~~~~~~---------~~ 452 (590)
T PRK13409 390 KPDEGEVDPE--LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG-SSYYKSEIIKPLQLERLLDKN---------VK 452 (590)
T ss_pred CCCceEEEEe--eeEEEecccccCCCCCcHHHHHHHHhhh-----cC-hHHHHHHHHHHCCCHHHHhCC---------cc
Confidence 9999998754 469999999865 467999999864210 11 233567889999998766654 78
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .++|+|+|||++..+..
T Consensus 453 ~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999998888765 38999999999987653
No 311
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=1.9e-30 Score=234.18 Aligned_cols=161 Identities=22% Similarity=0.243 Sum_probs=129.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~ 168 (298)
+|+|+||+|++|++++|+ |+| || |+++ + +|+.++ +|+|... .++.
T Consensus 11 ~l~~vsl~i~~Gei~~l~--------G~nGsGKSTLl~~-------l----~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGLLPG-SGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC-CeEEEECCEecCcCCHHHHhhh
Confidence 799999999999999999 999 99 9999 8 888864 8987531 1245
Q ss_pred EEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400 169 LFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMAR 247 (298)
Q Consensus 169 i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR 247 (298)
++|+||++.+ +..|+++|+.+..... .......+++.++++.+++.+..+++ +..||||||||++|||
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~ 139 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPDK--TRTEAVASALNEVAEALGLDDKLGRS---------VNQLSGGEWQRVRLAA 139 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCccC--CCcHHHHHHHHHHHHHcCCHhHhcCC---------cccCCHHHHHHHHHHH
Confidence 9999999864 4679999998753210 00111134678889999987655443 6799999999999999
Q ss_pred HHhc-------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 248 LFYH-------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 248 aL~~-------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
||+. +|+++||||||++||+.....+.+++++ .++|+|++||+++.+.
T Consensus 140 al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~ 197 (248)
T PRK03695 140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL 197 (248)
T ss_pred HHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 9997 6799999999999999999999888764 3799999999998654
No 312
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=242.91 Aligned_cols=190 Identities=24% Similarity=0.297 Sum_probs=145.7
Q ss_pred CcEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 79 NLRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
..++.++|.+.||-.. ........++++++||++++||.++|| |.| || +-.. | .+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV--------GESGSGKsTlG~a-------l----lr 335 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV--------GESGSGKSTLGLA-------L----LR 335 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE--------ecCCCCcchHHHH-------H----Hh
Confidence 4689999999997432 111123346999999999999999999 999 99 4444 3 33
Q ss_pred ccccCCceee--------------ccCCCcEEEEcCcCC--C-CCCCHHHHHccCCcchh-hhhcCCCHHHHHHHHHHcC
Q psy11400 153 LWPLFGGTVT--------------KPPRGKLFYVPQRPY--M-TLGTLRDQVIYPHTKED-MIQKGITDADLTEYLQKVQ 214 (298)
Q Consensus 153 l~~~~~G~i~--------------~~~r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~-~~~~~~~~~~i~~~l~~~~ 214 (298)
+.++ +|.|. .+.|+++-.|||||| + +..||.+.|.-+....+ .......++++.++++.+|
T Consensus 336 L~~s-~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVG 414 (534)
T COG4172 336 LIPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG 414 (534)
T ss_pred hcCc-CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcC
Confidence 4333 36653 245788999999998 3 34799998887654332 1112223567889999999
Q ss_pred CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR 290 (298)
Q Consensus 215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~ 290 (298)
++.- +..++++++|||||||+|||||++.+|++++||||||+||...+.++.+++++ .+.+.++||||
T Consensus 415 LDp~--------~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 415 LDPA--------TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred CChh--------HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 9742 22335899999999999999999999999999999999999999999988765 48999999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
+..++.
T Consensus 487 L~VvrA 492 (534)
T COG4172 487 LAVVRA 492 (534)
T ss_pred HHHHHH
Confidence 998874
No 313
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5e-31 Score=231.61 Aligned_cols=178 Identities=22% Similarity=0.221 Sum_probs=144.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++++++|+++|.+ .. +++|+||++++|++++++ |+| || .+|+ + .|+.+
T Consensus 2 ~L~ie~vtK~Fg~-k~--------av~~isf~v~~G~i~Gll--------G~NGAGKTTtfRm-------I----Lglle 53 (300)
T COG4152 2 ALEIEGVTKSFGD-KK--------AVDNISFEVPPGEIFGLL--------GPNGAGKTTTFRM-------I----LGLLE 53 (300)
T ss_pred ceEEecchhccCc-ee--------eecceeeeecCCeEEEee--------cCCCCCccchHHH-------H----hccCC
Confidence 4789999999953 33 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 156 LFGGTVTKP-------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 156 ~~~G~i~~~-------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
|++|+|+.. .+.+|||+|.+--++ ..|+.|.+.|......+. ......++..+|+++++.....+
T Consensus 54 ~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~-~~e~~~~~~~wLer~~i~~~~~~------ 126 (300)
T COG4152 54 PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP-KAEIQKKLQAWLERLEIVGKKTK------ 126 (300)
T ss_pred ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhccccccccc------
Confidence 999998643 246799999998876 479999999854322111 01123457778888888654433
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWT 295 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~ 295 (298)
++.+||.|++|++.+..+++|+|+++|||||+|||||.+.+.+.+.+. +.|.|||++||+++-+.
T Consensus 127 ---kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vE 194 (300)
T COG4152 127 ---KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVE 194 (300)
T ss_pred ---hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHH
Confidence 478999999999999999999999999999999999988877776644 46999999999998654
No 314
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=7.4e-31 Score=225.75 Aligned_cols=153 Identities=25% Similarity=0.320 Sum_probs=118.2
Q ss_pred EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
+++||++.|+. .. +++|+||++++|++++|+ |+| || |+++ + .|+++|+
T Consensus 1 ~~~~l~~~~~~-~~--------~l~~~~~~i~~G~~~~l~--------G~nGsGKStLl~~-------i----~G~~~~~ 52 (180)
T cd03214 1 EVENLSVGYGG-RT--------VLDDLSLSIEAGEIVGIL--------GPNGAGKSTLLKT-------L----AGLLKPS 52 (180)
T ss_pred CeeEEEEEECC-ee--------eEeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCC
Confidence 37899999964 33 899999999999999999 999 99 9999 8 9999999
Q ss_pred CceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCCh
Q psy11400 158 GGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237 (298)
Q Consensus 158 ~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSg 237 (298)
+|+|..... .+ .+. .....+..+.| +.++++.+++.+..++ .+.+|||
T Consensus 53 ~G~v~~~g~-~~---~~~---~~~~~~~~i~~----------------~~q~l~~~gl~~~~~~---------~~~~LS~ 100 (180)
T cd03214 53 SGEILLDGK-DL---ASL---SPKELARKIAY----------------VPQALELLGLAHLADR---------PFNELSG 100 (180)
T ss_pred CcEEEECCE-EC---CcC---CHHHHHHHHhH----------------HHHHHHHcCCHhHhcC---------CcccCCH
Confidence 999864321 01 000 00011111111 1116777888765544 2678999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchh
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLW 294 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~ 294 (298)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ . +.|+|++||+++.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999999999887764 2 78999999999875
No 315
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=4.6e-30 Score=224.49 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=120.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--c
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--W 154 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--~ 154 (298)
++++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+ .
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~ 52 (200)
T cd03217 1 LEIKDLHVSVGG-KE--------ILKGVNLTIKKGEVHALM--------GPNGSGKSTLAKT-------I----MGHPKY 52 (200)
T ss_pred CeEEEEEEEeCC-EE--------eeeccceEECCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCcC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 888 4
Q ss_pred ccCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 155 PLFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|++|+|... .+..++|+||++.++.+ ++++++ +.
T Consensus 53 ~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~ 100 (200)
T cd03217 53 EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY 100 (200)
T ss_pred CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH--------------------------------hh
Confidence 7899987531 12359999999876543 443333 01
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
...+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+.
T Consensus 101 ---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 101 ---------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ---------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 0247999999999999999999999999999999999999999888765 3789999999998765
No 316
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=5.9e-30 Score=261.01 Aligned_cols=178 Identities=20% Similarity=0.268 Sum_probs=143.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.|+++.. +++|+||+|++|++++|+ ||| || |+++ + .|+.
T Consensus 507 ~~L~~~~ls~~y~~~~~--------il~~vsl~i~~Ge~i~Lv--------G~NGsGKSTLLk~-------L----~Gll 559 (718)
T PLN03073 507 PIISFSDASFGYPGGPL--------LFKNLNFGIDLDSRIAMV--------GPNGIGKSTILKL-------I----SGEL 559 (718)
T ss_pred ceEEEEeeEEEeCCCCe--------eEeccEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 46999999999964444 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~ 233 (298)
+|++|+|....+.+|+|++|++. ...++.++....... . ......+++.++++.+++.. ..+++ +.
T Consensus 560 ~p~~G~I~~~~~~~igyv~Q~~~-~~l~~~~~~~~~~~~--~-~~~~~~~~i~~~L~~~gl~~~~~~~~---------~~ 626 (718)
T PLN03073 560 QPSSGTVFRSAKVRMAVFSQHHV-DGLDLSSNPLLYMMR--C-FPGVPEQKLRAHLGSFGVTGNLALQP---------MY 626 (718)
T ss_pred CCCCceEEECCceeEEEEecccc-ccCCcchhHHHHHHH--h-cCCCCHHHHHHHHHHCCCChHHhcCC---------cc
Confidence 99999998766668999999873 222444443211000 0 01234567888999999963 44443 67
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+|||++..+..
T Consensus 627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~ 689 (718)
T PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG 689 (718)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 999999999999999999999999999999999999999999888755699999999987653
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=8.8e-30 Score=257.81 Aligned_cols=177 Identities=20% Similarity=0.196 Sum_probs=145.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.|++ .. +++|+||+|++|++++|+ ||| || |+++ + .|+.
T Consensus 318 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------l----~G~~ 369 (635)
T PRK11147 318 IVFEMENVNYQIDG-KQ--------LVKDFSAQVQRGDKIALI--------GPNGCGKTTLLKL-------M----LGQL 369 (635)
T ss_pred ceEEEeeeEEEECC-eE--------EEcCcEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 46899999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcC-CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcCCccccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRP-YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKGWDTVADW 231 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~ 231 (298)
+|++|+|.....-.|+|++|++ .++ ..|+.+|+.++.... .......++.++++.+++. +..++ .
T Consensus 370 ~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~---------~ 437 (635)
T PRK11147 370 QADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNGRPRHVLGYLQDFLFHPKRAMT---------P 437 (635)
T ss_pred CCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccc---cccchHHHHHHHHHhcCCCHHHHhC---------h
Confidence 9999999764334699999986 344 469999998643210 0011134577788888885 34444 3
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++.+.|||+|||+.+.+.
T Consensus 438 ~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 6799999999999999999999999999999999999999999999987779999999998764
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=254.30 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=131.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC------------CC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP------------RG 167 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~------------r~ 167 (298)
+++|+||+|++||+++|+ ||| || |+++ + .|+++|++|+|.... ++
T Consensus 268 ~l~~isl~i~~Ge~~~ii--------G~NGsGKSTLlk~-------l----~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 268 LREPISFSVRAGEIVGLF--------GLVGAGRSELMKL-------L----YGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred cccceeEEEeCCcEEEEE--------cCCCCCHHHHHHH-------H----cCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 899999999999999999 999 99 9999 8 999999999986321 25
Q ss_pred cEEEEcCcCC---CC-CCCHHHHHccCCcchh---h--hhcCCCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCCh
Q psy11400 168 KLFYVPQRPY---MT-LGTLRDQVIYPHTKED---M--IQKGITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSG 237 (298)
Q Consensus 168 ~i~~v~Q~~~---l~-~~tv~eni~~~~~~~~---~--~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSg 237 (298)
.++|+||++. ++ ..|+.||+.++..... . .......+.+.++++.+++. +..++ .+.+|||
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSg 399 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQ---------LIMNLSG 399 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccC---------ccccCCH
Confidence 6999999973 44 5799999986432110 0 00001124567888888883 44444 3679999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+|||+++.+..
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~ 461 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLG 461 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHh
Confidence 999999999999999999999999999999999999887644 48999999999987753
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=254.09 Aligned_cols=165 Identities=22% Similarity=0.302 Sum_probs=131.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------------CCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------------PRG 167 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------------~r~ 167 (298)
+++|+||+|++||+++|+ ||| || |+++ + .|+.+|++|+|... .++
T Consensus 267 ~l~~vsl~i~~Ge~~~li--------G~NGsGKSTLl~~-------l----~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVS--------GLMGAGRTELMKV-------L----YGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred CcccceEEEcCCcEEEEe--------cCCCCCHHHHHHH-------H----hCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 799999999999999999 999 99 9999 8 99999999998532 134
Q ss_pred cEEEEcCcC---CCC-CCCHHHHHccCCcch--h---hhhcCCCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCCh
Q psy11400 168 KLFYVPQRP---YMT-LGTLRDQVIYPHTKE--D---MIQKGITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSG 237 (298)
Q Consensus 168 ~i~~v~Q~~---~l~-~~tv~eni~~~~~~~--~---~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSg 237 (298)
+++|+||++ .++ ..|+.+|+.++.... . ........+++.++++.+++. +..++ .+.+|||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSg 398 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ---------AIGLLSG 398 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC---------chhhCCH
Confidence 699999997 344 469999998753100 0 000001134577888888884 44444 3679999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
||||||+|||||+.+|++|||||||++||+.+.+.+.+++++ .|.|+|++||+++.+..
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~ 460 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLG 460 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999998888765 47899999999987653
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=256.98 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=141.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|.++||+++|.. .. +|+|+||+|++|++++|+ ||| || |+++ | +|+.+
T Consensus 1 ~i~i~nls~~~g~-~~--------~l~~vs~~i~~Ge~v~Lv--------G~NGsGKSTLLki-------L----~G~~~ 52 (638)
T PRK10636 1 MIVFSSLQIRRGV-RV--------LLDNATATINPGQKVGLV--------GKNGCGKSTLLAL-------L----KNEIS 52 (638)
T ss_pred CEEEEEEEEEeCC-ce--------eecCcEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 4789999999953 34 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcc-----------------------hhhhh---cCCCHHHHHHH
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTK-----------------------EDMIQ---KGITDADLTEY 209 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-----------------------~~~~~---~~~~~~~i~~~ 209 (298)
|++|+|.......++|++|++..+..++.+.+...... ..... ......++.++
T Consensus 53 pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (638)
T PRK10636 53 ADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132 (638)
T ss_pred CCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999987655569999997644445665554321000 00000 00113456777
Q ss_pred HHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400 210 LQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS 288 (298)
Q Consensus 210 l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit 288 (298)
++.+++. +..++ .+.+|||||||||+|||||+.+|++|||||||++||+.+..++.+++++.+.|||+||
T Consensus 133 L~~lgl~~~~~~~---------~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivs 203 (638)
T PRK10636 133 LHGLGFSNEQLER---------PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILIS 203 (638)
T ss_pred HHhCCCCchhhcC---------chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 8888875 34444 3679999999999999999999999999999999999999999999998888999999
Q ss_pred cCcchhh
Q psy11400 289 HRKSLWT 295 (298)
Q Consensus 289 H~l~~~~ 295 (298)
|+...+.
T Consensus 204 Hd~~~l~ 210 (638)
T PRK10636 204 HDRDFLD 210 (638)
T ss_pred CCHHHHH
Confidence 9998764
No 321
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=7.1e-30 Score=226.88 Aligned_cols=158 Identities=25% Similarity=0.294 Sum_probs=127.0
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC------CCcEEEEcCcCCC-
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP------RGKLFYVPQRPYM- 178 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~------r~~i~~v~Q~~~l- 178 (298)
|+|++|++++|+ |+| || |+++ + +|+++|++|+|.... +++++|+||++.+
T Consensus 1 l~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 61 (223)
T TIGR03771 1 LSADKGELLGLL--------GPNGAGKTTLLRA-------I----LGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA 61 (223)
T ss_pred CccCCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCceEEECCccchHhhCcEEEeccccccc
Confidence 578999999999 999 99 9999 8 999999999986432 4579999999865
Q ss_pred --CCCCHHHHHccCCcch-hhhh-c-CCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC
Q psy11400 179 --TLGTLRDQVIYPHTKE-DMIQ-K-GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP 253 (298)
Q Consensus 179 --~~~tv~eni~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P 253 (298)
+..|+.+|+.++.... .... . ....+++.++++.+++.+..+. .+.+||||||||++|||||+++|
T Consensus 62 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p 132 (223)
T TIGR03771 62 WDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR---------PVGELSGGQRQRVLVARALATRP 132 (223)
T ss_pred CCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 3469999997753210 0000 0 1123457788999998765544 36789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 254 QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 254 ~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.
T Consensus 133 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 133 SVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177 (223)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 99999999999999999999888764 4789999999998654
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=256.62 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=143.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + .|+.
T Consensus 311 ~~l~~~~l~~~y~~-~~--------il~~isl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------l----~G~~ 362 (638)
T PRK10636 311 PLLKMEKVSAGYGD-RI--------ILDSIKLNLVPGSRIGLL--------GRNGAGKSTLIKL-------L----AGEL 362 (638)
T ss_pred ceEEEEeeEEEeCC-ee--------eeccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 46999999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcC--CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRP--YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVAD 230 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~ 230 (298)
+|++|+|......++||++|++ .+. ..|+.+++.... .......+.++++.+++.. ..+++
T Consensus 363 ~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~l~~~~~~~~-------- 427 (638)
T PRK10636 363 APVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLA-------PQELEQKLRDYLGGFGFQGDKVTEE-------- 427 (638)
T ss_pred CCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhC-------chhhHHHHHHHHHHcCCChhHhcCc--------
Confidence 9999999765445799999985 233 347777763211 1123456788899998853 44443
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+++++.+.|||+|||++..+.
T Consensus 428 -~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~ 491 (638)
T PRK10636 428 -TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLR 491 (638)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 6799999999999999999999999999999999999999999999887779999999998765
No 323
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=7.5e-30 Score=279.24 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=149.3
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|+.++.. +++|+||++++||+++|+ |+| || |+++ + .|+.
T Consensus 927 ~~L~I~nLsK~y~~~~k~-------aL~~lsl~I~~Gei~aLL--------G~NGAGKSTLLki-------L----aGLl 980 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRP-------AVDRLNITFYENQITAFL--------GHNGAGKTTTLSI-------L----TGLL 980 (2272)
T ss_pred ceEEEEeEEEEecCCCce-------EEEeeEEEEcCCcEEEEE--------CCCCChHHHHHHH-------H----hcCC
Confidence 368999999999633322 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 155 PLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
+|++|++... .++.+||+||++.++. .|++||+.++...... ......+++.++++.+++.+..+++
T Consensus 981 ~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~-~~~~~~~~v~~lL~~vgL~~~~~~~- 1058 (2272)
T TIGR01257 981 PPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDTGLHHKRNEE- 1058 (2272)
T ss_pred CCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCC-
Confidence 9999998531 2467999999998775 6999999875321100 0011235678899999998766553
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|+++||||||||||+.+++.+++++++ .|+|||++||+++.+.
T Consensus 1059 --------~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~ 1124 (2272)
T TIGR01257 1059 --------AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124 (2272)
T ss_pred --------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 679999999999999999999999999999999999999999998876 3899999999998765
No 324
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1e-29 Score=245.59 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=145.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|++++|+.- . +|+|+||++++||+++++ |.| || |+|+ | .|.|+
T Consensus 8 ll~~~~i~K~FggV-~--------AL~~v~l~v~~GEV~aL~--------GeNGAGKSTLmKi-------L----sGv~~ 59 (500)
T COG1129 8 LLELRGISKSFGGV-K--------ALDGVSLTVRPGEVHALL--------GENGAGKSTLMKI-------L----SGVYP 59 (500)
T ss_pred eeeeecceEEcCCc-e--------eeccceeEEeCceEEEEe--------cCCCCCHHHHHHH-------H----hCccc
Confidence 58899999999742 3 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchh---hhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKED---MIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|+|... ....|+.|+|+..+. +.||.|||.++..+.. ...+....++..++++.+++....
T Consensus 60 p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~ 139 (500)
T COG1129 60 PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP 139 (500)
T ss_pred CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCCh
Confidence 999998632 134699999999875 6799999988764321 111112245667788888875212
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~ 295 (298)
+. ...+||.||||.|+||||+..+++++|||||||+|+....+.+++.++ +.|.++|+||||++.+.
T Consensus 140 ~~---------~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 140 DT---------LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred hh---------hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 22 367999999999999999999999999999999999988777777655 46999999999998764
No 325
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-29 Score=230.31 Aligned_cols=185 Identities=13% Similarity=0.061 Sum_probs=139.1
Q ss_pred cEEEeeeeEecCCCC----------CCC-CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcc
Q psy11400 80 LRGRLGITLGLRSGG----------LGF-DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYM 144 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~----------~~~-~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~ 144 (298)
.++++||++.|...+ .++ ......+++|+||+|++|++++|+ |+| || |+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~li--------G~NGsGKSTLlk~------ 69 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLV--------GINGSGKSTLSNI------ 69 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH------
Confidence 467777777664311 001 112234899999999999999999 999 99 9999
Q ss_pred ccccccccccccCCceeeccCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 145 TLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 145 ~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
+ +|+++|++|+|.... .+++++|++.++ ..|+.+|+.++...... ......+.+.++++.+++.+..+++
T Consensus 70 -L----~Gl~~p~~G~I~~~g--~~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~- 140 (264)
T PRK13546 70 -I----GGSLSPTVGKVDRNG--EVSVIAISAGLSGQLTGIENIEFKMLCMGF-KRKEIKAMTPKIIEFSELGEFIYQP- 140 (264)
T ss_pred -H----hCCcCCCceEEEECC--EEeEEecccCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC-
Confidence 8 999999999987543 477888888665 46999999764211000 0000112345567777777655543
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.+.+ .++|+|++||+++.+.
T Consensus 141 --------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~ 207 (264)
T PRK13546 141 --------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207 (264)
T ss_pred --------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 679999999999999999999999999999999999998888887654 4899999999998764
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.2e-29 Score=249.52 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=139.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|++ .. +++|+||+|++||+++|+ ||| || |+++ + +|+.
T Consensus 259 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~NGsGKSTLl~~-------l----~G~~ 310 (490)
T PRK10938 259 PRIVLNNGVVSYND-RP--------ILHNLSWQVNPGEHWQIV--------GPNGAGKSTLLSL-------I----TGDH 310 (490)
T ss_pred ceEEEeceEEEECC-ee--------EEeeceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence 46999999999953 33 899999999999999999 999 99 9999 8 8887
Q ss_pred cc-CCceeecc------------CCCcEEEEcCcCCCC-C--CCHHHHHccCCcch-hhhh--cCCCHHHHHHHHHHcCC
Q psy11400 155 PL-FGGTVTKP------------PRGKLFYVPQRPYMT-L--GTLRDQVIYPHTKE-DMIQ--KGITDADLTEYLQKVQL 215 (298)
Q Consensus 155 ~~-~~G~i~~~------------~r~~i~~v~Q~~~l~-~--~tv~eni~~~~~~~-~~~~--~~~~~~~i~~~l~~~~l 215 (298)
++ ++|+|... .+++|+|++|++.++ . .++.+++.++.... .... .....+++.++++.+++
T Consensus 311 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 390 (490)
T PRK10938 311 PQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI 390 (490)
T ss_pred CcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC
Confidence 75 68887531 134699999998643 2 36777665432100 0000 00113457788999998
Q ss_pred ch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC-cEEEEEecC
Q psy11400 216 GY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG-ITLFTVSHR 290 (298)
Q Consensus 216 ~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~-~TiIiitH~ 290 (298)
.+ ..+++ +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .+ .|||+|||+
T Consensus 391 ~~~~~~~~---------~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 391 DKRTADAP---------FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred chhhccCc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 75 55543 679999999999999999999999999999999999999999888765 24 579999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
++.+.
T Consensus 462 ~~~~~ 466 (490)
T PRK10938 462 AEDAP 466 (490)
T ss_pred hhhhh
Confidence 98775
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=1.8e-29 Score=209.90 Aligned_cols=127 Identities=25% Similarity=0.265 Sum_probs=116.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++++||++++||+++|+ |+| || |+++ + .|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------~l~~~~~~~~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~ 52 (144)
T cd03221 1 IELENLSKTYGG-KL--------LLKDISLTINPGDRIGLV--------GRNGAGKSTLLKL-------I----AGELEP 52 (144)
T ss_pred CEEEEEEEEECC-ce--------EEEeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC
Confidence 468899999964 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS 236 (298)
++|+|....+..++|+|| ||
T Consensus 53 ~~G~i~~~~~~~i~~~~~------------------------------------------------------------lS 72 (144)
T cd03221 53 DEGIVTWGSTVKIGYFEQ------------------------------------------------------------LS 72 (144)
T ss_pred CceEEEECCeEEEEEEcc------------------------------------------------------------CC
Confidence 999998766567888888 89
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+||+||++|||||+.+|+++||||||++||+.+...+.+.+++.+.|+|++||+++.+.
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~ 131 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999999888899999999998764
No 328
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=256.80 Aligned_cols=182 Identities=21% Similarity=0.200 Sum_probs=147.7
Q ss_pred cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+++++|+++.|+.+. .+ +++|+||++++||+++|+ |+| || |+++ + +|+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~-------il~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl 57 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVE-------VLKGISLDIYAGEMVAIV--------GASGSGKSTLMNI-------L----GCL 57 (648)
T ss_pred EEEEeeEEEEeCCCCCCee-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence 689999999996421 22 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400 154 WPLFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY 217 (298)
Q Consensus 154 ~~~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 217 (298)
++|++|++... .++.++|+||++.+++ .|+.||+.++...... .....++++.++++.+++.+
T Consensus 58 ~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~lgl~~ 136 (648)
T PRK10535 58 DKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL-ERKQRLLRAQELLQRLGLED 136 (648)
T ss_pred CCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCChh
Confidence 99999987421 1357999999998875 5999999864211000 00112345778889999877
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
..+++ +.+||+||+||++|||||+++|+++||||||++||+.+.+.+.+++++ .++|+|++||+++.+
T Consensus 137 ~~~~~---------~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~ 207 (648)
T PRK10535 137 RVEYQ---------PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA 207 (648)
T ss_pred hhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 66553 679999999999999999999999999999999999999999888764 479999999999877
Q ss_pred hhc
Q psy11400 295 THH 297 (298)
Q Consensus 295 ~~~ 297 (298)
...
T Consensus 208 ~~~ 210 (648)
T PRK10535 208 AQA 210 (648)
T ss_pred HhC
Confidence 543
No 329
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-29 Score=246.20 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=139.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|++|.|+.+... .+|+|+||+|++|++++|+ |+| || |+++ + +|+.
T Consensus 20 ~mL~lknL~~~~~~~~~~------~IL~nVSfsI~~GEivgIi--------GpNGSGKSTLLki-------L----aGLl 74 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYH------YALNNISFEVPEGEIVGII--------GLNGSGKSTLSNL-------I----AGVT 74 (549)
T ss_pred ceeEEEEEEEecCCCccc------eEEeeeEEEEeCCCEEEEE--------cCCCCCHHHHHHH-------H----hCCC
Confidence 468999999999754321 1899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~ 233 (298)
+|++|+|...... .++++.+.++ ..|++||+.+....... ......+.+.++++.+++.++.+++ +.
T Consensus 75 ~P~sGeI~I~G~~--~~i~~~~~l~~~lTV~EnL~l~~~~~~~-~~~e~~e~i~elLe~lgL~~~ld~~---------~~ 142 (549)
T PRK13545 75 MPNKGTVDIKGSA--ALIAISSGLNGQLTGIENIELKGLMMGL-TKEKIKEIIPEIIEFADIGKFIYQP---------VK 142 (549)
T ss_pred CCCceEEEECCEe--eeEEeccccCCCCcHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHcCChhHhhCC---------cc
Confidence 9999998754321 2333444443 46999999764211000 0001123456788888887766553 67
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+.
T Consensus 143 ~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 143 TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999988888754 4899999999998764
No 330
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2e-29 Score=213.77 Aligned_cols=139 Identities=22% Similarity=0.224 Sum_probs=108.2
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|+++.|++ .. +++|+||++++||+++|+ |+| || |+++ + +|+++|
T Consensus 1 l~~~~l~~~~~~-~~--------vl~~i~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~~ 52 (163)
T cd03216 1 LELRGITKRFGG-VK--------ALDGVSLSVRRGEVHALL--------GENGAGKSTLMKI-------L----SGLYKP 52 (163)
T ss_pred CEEEEEEEEECC-eE--------EEeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence 468999999963 33 899999999999999999 999 99 9999 8 999999
Q ss_pred CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS 236 (298)
++|+|..... .+. . .+.. +... -.+. ...+||
T Consensus 53 ~~G~v~~~g~-~~~---~--------------------------~~~~---~~~~-~~i~--------------~~~qLS 84 (163)
T cd03216 53 DSGEILVDGK-EVS---F--------------------------ASPR---DARR-AGIA--------------MVYQLS 84 (163)
T ss_pred CCeEEEECCE-ECC---c--------------------------CCHH---HHHh-cCeE--------------EEEecC
Confidence 9998754221 000 0 0000 0000 0000 012399
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+.
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999988765 3789999999998654
No 331
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=1.5e-29 Score=276.90 Aligned_cols=182 Identities=17% Similarity=0.130 Sum_probs=148.5
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+.+++++|+++.|+++... +++|+||+|++||+++|+ |+| || |+++ + .|+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~-------aL~~ISf~I~~GEi~gLL--------G~NGAGKTTLlkm-------L----~Gl 1988 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSP-------AVDRLCVGVRPGECFGLL--------GVNGAGKTTTFKM-------L----TGD 1988 (2272)
T ss_pred CceEEEEEEEEEECCCCce-------EEEeeEEEEcCCcEEEEE--------CCCCCcHHHHHHH-------H----hCC
Confidence 3579999999999643222 999999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 154 WPLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 154 ~~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
.+|++|+|... .+++|||+||++.++. .|++||+.+....... .....++.+.++++.+++.+..+++
T Consensus 1989 l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~-~~~~~~~~v~~lLe~lgL~~~~dk~ 2067 (2272)
T TIGR01257 1989 TTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV-PAEEIEKVANWSIQSLGLSLYADRL 2067 (2272)
T ss_pred CCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHHHhcCC
Confidence 99999998531 2457999999987764 6999999763211100 0001124566789999998776653
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+||+||+.+|++++|||||+|||+..++.+++.+++ .|+|||++||+++.+.
T Consensus 2068 ---------~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2068 ---------AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999987764 4899999999998765
No 332
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=248.94 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=136.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|+++|+++.+ .. +++|+||+|++||+++|+ |+| || |+++ + .|+.
T Consensus 249 ~~i~~~~l~~~~---~~--------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~ 298 (491)
T PRK10982 249 VILEVRNLTSLR---QP--------SIRDVSFDLHKGEILGIA--------GLVGAKRTDIVET-------L----FGIR 298 (491)
T ss_pred cEEEEeCccccc---Cc--------ccceeeEEEeCCcEEEEe--------cCCCCCHHHHHHH-------H----cCCC
Confidence 368999999874 23 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccC------------CCcEEEEcCcCC---CC-CCCHHHHHccCCcc-----hhhhhcCCCHHHHHHHHHHc
Q psy11400 155 PLFGGTVTKPP------------RGKLFYVPQRPY---MT-LGTLRDQVIYPHTK-----EDMIQKGITDADLTEYLQKV 213 (298)
Q Consensus 155 ~~~~G~i~~~~------------r~~i~~v~Q~~~---l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~i~~~l~~~ 213 (298)
+|++|+|.... ++.++|+||++. ++ ..|+.+|+.+.... ..........+.+.++++.+
T Consensus 299 ~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (491)
T PRK10982 299 EKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378 (491)
T ss_pred cCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence 99999986321 234999999863 34 35777774332100 00000001124566778888
Q ss_pred CCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400 214 QLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH 289 (298)
Q Consensus 214 ~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH 289 (298)
++. +..++ ++.+|||||||||+||||++.+|++|||||||+|||+.+...+++++++ .+.|||++||
T Consensus 379 ~l~~~~~~~---------~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsH 449 (491)
T PRK10982 379 RVKTPGHRT---------QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISS 449 (491)
T ss_pred CccCCCccc---------ccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECC
Confidence 774 23333 4789999999999999999999999999999999999999999887743 5899999999
Q ss_pred Ccchhhh
Q psy11400 290 RKSLWTH 296 (298)
Q Consensus 290 ~l~~~~~ 296 (298)
+++.+..
T Consensus 450 d~~~~~~ 456 (491)
T PRK10982 450 EMPELLG 456 (491)
T ss_pred ChHHHHh
Confidence 9987753
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=2.2e-29 Score=249.06 Aligned_cols=176 Identities=22% Similarity=0.249 Sum_probs=137.3
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|++. . +++|+||+|++|++++|+ ||| || |+++ + .|+.
T Consensus 267 ~~l~~~~l~~------~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLl~~-------i----~Gl~ 313 (510)
T PRK15439 267 PVLTVEDLTG------E--------GFRNISLEVRAGEILGLA--------GVVGAGRTELAET-------L----YGLR 313 (510)
T ss_pred ceEEEeCCCC------C--------CccceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence 3688888872 1 689999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccC------------CCcEEEEcCcC---CCC-CCCHHHHHccCCcc-hhh-hhcCCCHHHHHHHHHHcCCc
Q psy11400 155 PLFGGTVTKPP------------RGKLFYVPQRP---YMT-LGTLRDQVIYPHTK-EDM-IQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~~~~G~i~~~~------------r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~-~~~-~~~~~~~~~i~~~l~~~~l~ 216 (298)
+|++|+|.... +.+|+|+||++ .++ ..|+.+|+...... ... .......+.+.++++.+++.
T Consensus 314 ~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (510)
T PRK15439 314 PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK 393 (510)
T ss_pred CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence 99999985321 24699999985 244 45999998532100 000 00011124567888888885
Q ss_pred -hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 217 -YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 217 -~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|||+|||+++
T Consensus 394 ~~~~~~---------~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 394 FNHAEQ---------AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred CCCccC---------ccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 44444 3679999999999999999999999999999999999999998888765 4899999999998
Q ss_pred hhhh
Q psy11400 293 LWTH 296 (298)
Q Consensus 293 ~~~~ 296 (298)
.+..
T Consensus 465 ~i~~ 468 (510)
T PRK15439 465 EIEQ 468 (510)
T ss_pred HHHH
Confidence 7753
No 334
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2e-29 Score=228.62 Aligned_cols=168 Identities=22% Similarity=0.196 Sum_probs=133.9
Q ss_pred eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
||+++|+.... +++|+|+ +++|++++|+ ||| || |+++ + +|+++|++|+
T Consensus 5 ~~~~~y~~~~~--------~l~~i~~-i~~Ge~~~Iv--------G~nGsGKSTLlk~-------l----~Gl~~p~~G~ 56 (255)
T cd03236 5 EPVHRYGPNSF--------KLHRLPV-PREGQVLGLV--------GPNGIGKSTALKI-------L----AGKLKPNLGK 56 (255)
T ss_pred CcceeecCcch--------hhhcCCC-CCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcCCCCce
Confidence 68888964434 8999995 9999999999 999 99 9999 8 9999999999
Q ss_pred ee-----------cc-----------CC--CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 161 VT-----------KP-----------PR--GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 161 i~-----------~~-----------~r--~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
|. .. .+ ..++|++|.+.++..++.+++.+... .....+.+.++++.+++.
T Consensus 57 I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~ 130 (255)
T cd03236 57 FDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLK------KKDERGKLDELVDQLELR 130 (255)
T ss_pred EeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhc------hhHHHHHHHHHHHHcCCc
Confidence 84 10 01 13789999877665566666654321 111235678889999987
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
+..++ .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.
T Consensus 131 ~~~~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~ 201 (255)
T cd03236 131 HVLDR---------NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV 201 (255)
T ss_pred hhhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 65544 2678999999999999999999999999999999999998888877764 37999999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 202 ~~ 203 (255)
T cd03236 202 LD 203 (255)
T ss_pred HH
Confidence 65
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.4e-29 Score=225.37 Aligned_cols=163 Identities=23% Similarity=0.291 Sum_probs=131.0
Q ss_pred cEEEeeeeEecCCCCCCCCCC-cccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSR-WGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~-~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.++++|+++.|+.+.. ++.. ..++++||||+|++||+++|| |+| || +-|+ + .|+.
T Consensus 4 ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glV--------GESG~GKSTlgr~-------i----~~L~ 63 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLV--------GESGCGKSTLGRL-------I----LGLE 63 (268)
T ss_pred eEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEE--------ecCCCCHHHHHHH-------H----HcCc
Confidence 5889999999975421 1111 234999999999999999999 999 99 8888 7 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~ 233 (298)
+|++|+|...... +.-+ + .....+++.+.++.+|+.. ++.+ .++
T Consensus 64 ~pt~G~i~f~g~~-i~~~---------~----------------~~~~~~~v~elL~~Vgl~~~~~~r---------yPh 108 (268)
T COG4608 64 EPTSGEILFEGKD-ITKL---------S----------------KEERRERVLELLEKVGLPEEFLYR---------YPH 108 (268)
T ss_pred CCCCceEEEcCcc-hhhc---------c----------------hhHHHHHHHHHHHHhCCCHHHhhc---------CCc
Confidence 9999998654322 0000 0 1123466889999999864 5555 478
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhhc
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~~ 297 (298)
+|||||+||++|||||+.+|+++++|||||+||...+.++.+++++ .|.|.++||||++.+++.
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 9999999999999999999999999999999999999998888764 599999999999999874
No 336
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=238.97 Aligned_cols=180 Identities=22% Similarity=0.218 Sum_probs=148.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++++++.|| +-. +.+||||+|++||+.||+ |.| || |+++ | .|+|+
T Consensus 4 ~l~~~~itK~f~-~~~--------And~V~l~v~~GeIHaLL--------GENGAGKSTLm~i-------L----~G~~~ 55 (501)
T COG3845 4 ALEMRGITKRFP-GVV--------ANDDVSLSVKKGEIHALL--------GENGAGKSTLMKI-------L----FGLYQ 55 (501)
T ss_pred eEEEeccEEEcC-CEE--------ecCceeeeecCCcEEEEe--------ccCCCCHHHHHHH-------H----hCccc
Confidence 588999999998 334 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .+..||+|+|++.+++ .|+.|||..+..... ........+++.++.+.+|+.--.+
T Consensus 56 P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~ 135 (501)
T COG3845 56 PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD 135 (501)
T ss_pred CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc
Confidence 999998532 2457999999998864 699999998764211 1111123467888888888853222
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~ 296 (298)
. ...+||-||||||.|.+||+++|++||||||||-|-|...+.+++.++ +.|+|||+|||++..++.
T Consensus 136 ~---------~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 136 A---------KVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred c---------eeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 2 367999999999999999999999999999999999998888877665 469999999999998775
No 337
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=226.46 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=135.3
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---------------cC
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---------------PP 165 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---------------~~ 165 (298)
--+++|..+.-.++||. |+| || |+++ + +|+..|++|.|.. +.
T Consensus 14 ~l~a~~~~p~~GvTAlF--------G~SGsGKTslin~-------I----aGL~rPdeG~I~lngr~L~Ds~k~i~lp~~ 74 (352)
T COG4148 14 ALDANFTLPARGITALF--------GPSGSGKTSLINM-------I----AGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74 (352)
T ss_pred EEEEeccCCCCceEEEe--------cCCCCChhhHHHH-------H----hccCCccccEEEECCEEeecccCCcccChh
Confidence 34789999888999999 999 99 9999 8 9999999999852 12
Q ss_pred CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400 166 RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA 244 (298)
Q Consensus 166 r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla 244 (298)
+++|||||||..+|+ .||+.|+.|+.. .....+.++++..+|+++++++. +.+|||||||||+
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~~-------~~~~~~fd~iv~lLGI~hLL~R~---------P~~LSGGEkQRVA 138 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGMW-------KSMRAQFDQLVALLGIEHLLDRY---------PGTLSGGEKQRVA 138 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhhc-------ccchHhHHHHHHHhCcHHHHhhC---------CCccCcchhhHHH
Confidence 678999999998875 799999999863 23456788899999999999884 7899999999999
Q ss_pred HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
|+|||+.+|++|+||||.|+||..-+.+++.++++ .++.|+.|||.++.+.
T Consensus 139 IGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred HHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 99999999999999999999999888888776653 5899999999987654
No 338
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=6.1e-29 Score=244.64 Aligned_cols=178 Identities=21% Similarity=0.216 Sum_probs=142.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|.++|++++|+ ++. +++|+||++.+|++++|| |+| || |+++ | +|...
T Consensus 3 ~i~~~~ls~~~g-~~~--------l~~~~~l~~~~G~riGLv--------G~NGaGKSTLLki-------l----aG~~~ 54 (530)
T COG0488 3 MITLENLSLAYG-DRP--------LLENVSLTLNPGERIGLV--------GRNGAGKSTLLKI-------L----AGELE 54 (530)
T ss_pred eEEEeeeEEeeC-Cce--------eecCCcceeCCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCc
Confidence 589999999994 444 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhh-------c-C---------------------CCHHH
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQ-------K-G---------------------ITDAD 205 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~-------~-~---------------------~~~~~ 205 (298)
|++|+|..+..-+++|++|++.+.. .|+.+.+..+........ . . ..+.+
T Consensus 55 ~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 55 PDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred CCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 9999998877678999999998875 499999876642110000 0 0 00123
Q ss_pred HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEE
Q psy11400 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285 (298)
Q Consensus 206 i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiI 285 (298)
+..++..+++... .....+||||||.||+||+||+.+|++|+|||||++||.++..++-+++++...|+|
T Consensus 135 ~~~~L~gLg~~~~----------~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtvi 204 (530)
T COG0488 135 AEEALLGLGFPDE----------DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVI 204 (530)
T ss_pred HHHHHhcCCCCcc----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEE
Confidence 3344444444322 224689999999999999999999999999999999999999999999987644999
Q ss_pred EEecCcchhh
Q psy11400 286 TVSHRKSLWT 295 (298)
Q Consensus 286 iitH~l~~~~ 295 (298)
+||||..+..
T Consensus 205 iVSHDR~FLd 214 (530)
T COG0488 205 VVSHDRYFLD 214 (530)
T ss_pred EEeCCHHHHH
Confidence 9999987654
No 339
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.2e-29 Score=213.72 Aligned_cols=181 Identities=23% Similarity=0.222 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+.+|+|+... ++. +++++||++++||+++|+ ||| || |+|. | .|-..
T Consensus 1 mi~a~nls~~~~-Gr~--------ll~~vsl~~~pGev~ail--------GPNGAGKSTlLk~-------L----sGel~ 52 (259)
T COG4559 1 MIRAENLSYSLA-GRR--------LLDGVSLDLRPGEVLAIL--------GPNGAGKSTLLKA-------L----SGELS 52 (259)
T ss_pred CeeeeeeEEEee-cce--------eccCcceeccCCcEEEEE--------CCCCccHHHHHHH-------h----hCccC
Confidence 478899999874 444 899999999999999999 999 99 9999 8 88889
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCH-HHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITD-ADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~-~~i~~~l~~~~l~~~~~~~ 222 (298)
|++|++... ..++-+.+||+..+ |+.|++|-+.++..+.........+ .-+.+++..+++..+..+.
T Consensus 53 p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~ 132 (259)
T COG4559 53 PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD 132 (259)
T ss_pred CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc
Confidence 999998632 13567899999876 7889999999886543211111112 2367889999998887763
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhc------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYH------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
..+|||||||||.+||+|.+ ++++|+||||||+||..-+..++++.++ .|..|+.|-||+++
T Consensus 133 ---------y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL 203 (259)
T COG4559 133 ---------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL 203 (259)
T ss_pred ---------hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence 56899999999999999974 4569999999999999888888777665 48999999999998
Q ss_pred hhhc
Q psy11400 294 WTHH 297 (298)
Q Consensus 294 ~~~~ 297 (298)
...|
T Consensus 204 AA~Y 207 (259)
T COG4559 204 AAQY 207 (259)
T ss_pred HHHh
Confidence 7654
No 340
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=8e-29 Score=230.67 Aligned_cols=190 Identities=19% Similarity=0.247 Sum_probs=138.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc------eeecCccCcccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK------LFYVPQRPYMTLGTLR 150 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK------L~~~~~~~~~~l~~~~ 150 (298)
..+.++|+++.|.... .+..+++++||+|++||.+|+| |.| || +++++..+.
T Consensus 5 ~lL~v~nLsV~f~~~~-----~~~~aVk~isf~i~~GEtlAlV--------GESGSGKSvTa~sim~LLp~~~------- 64 (534)
T COG4172 5 PLLSIRNLSVAFHQEG-----GTVEAVKGISFDIEAGETLALV--------GESGSGKSVTALSILGLLPSPA------- 64 (534)
T ss_pred cceeeeccEEEEecCC-----cceEeeccceeeecCCCEEEEE--------ecCCCCccHHHHHHHHhcCCCc-------
Confidence 3588999998884321 0113999999999999999999 999 99 344421110
Q ss_pred ccccccCCceeecc---------------CCCcEEEEcCcCCC--CC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400 151 DQLWPLFGGTVTKP---------------PRGKLFYVPQRPYM--TL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212 (298)
Q Consensus 151 ~~l~~~~~G~i~~~---------------~r~~i~~v~Q~~~l--~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 212 (298)
.. .-+|+|... ...+|+++||+|.- -+ .|+..++.-+.............+++.++|+.
T Consensus 65 -~~--~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~ 141 (534)
T COG4172 65 -AA--HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLEL 141 (534)
T ss_pred -cc--CccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 01 124554311 13479999999963 22 48877776443221111222345678899999
Q ss_pred cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS 288 (298)
Q Consensus 213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit 288 (298)
+|+.+-..+. ..++++|||||||||.||.||+.+|++||.||||.|||...+.+|++++++ .|+++++||
T Consensus 142 VgI~~p~~rl------~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT 215 (534)
T COG4172 142 VGIPEPEKRL------DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215 (534)
T ss_pred cCCCchhhhh------hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe
Confidence 9997644332 236899999999999999999999999999999999999999999988875 599999999
Q ss_pred cCcchhhhc
Q psy11400 289 HRKSLWTHH 297 (298)
Q Consensus 289 H~l~~~~~~ 297 (298)
||++.++.+
T Consensus 216 HDL~iVr~~ 224 (534)
T COG4172 216 HDLGIVRKF 224 (534)
T ss_pred ccHHHHHHh
Confidence 999998764
No 341
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=4.4e-29 Score=252.96 Aligned_cols=166 Identities=22% Similarity=0.175 Sum_probs=131.5
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC--Cceeecc-------CCCcE
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF--GGTVTKP-------PRGKL 169 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~--~G~i~~~-------~r~~i 169 (298)
.+|+|+|+++++||+++|+ ||| || |+++ | +|..+|. +|+|... .++++
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~--------GpnGaGKSTLL~i-------L----aG~~~~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 82 TILNGVTGMASPGEILAVL--------GPSGSGKSTLLNA-------L----AGRIQGNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred eeeeCCEEEEECCEEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceeEEEEECCEECchhhccce
Confidence 3999999999999999999 999 99 9999 8 8888774 7887532 24569
Q ss_pred EEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400 170 FYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA 244 (298)
Q Consensus 170 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla 244 (298)
+||+|++.++. .|++||+.+...... ....+ .+.++++++.+++.+..+..-| ......||||||||++
T Consensus 143 ~yv~Q~~~l~~~lTV~E~l~~~a~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg----~~~~~~LSgGerqRv~ 216 (659)
T PLN03211 143 GFVTQDDILYPHLTVRETLVFCSLLRL--PKSLTKQEKILVAESVISELGLTKCENTIIG----NSFIRGISGGERKRVS 216 (659)
T ss_pred EEECcccccCCcCCHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHHHcCChhhcCceeC----CCCCCCcChhhhhHHH
Confidence 99999998875 699999987431100 00111 2446788899998764432100 1135789999999999
Q ss_pred HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
|||+|+.+|++++|||||+|||+.+...+.+.+++ .|+|||+++|+++.
T Consensus 217 ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~ 268 (659)
T PLN03211 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268 (659)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 99999999999999999999999999999888765 48999999999973
No 342
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.1e-29 Score=219.50 Aligned_cols=180 Identities=23% Similarity=0.238 Sum_probs=143.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|+++||++.|. ++. +|+|+|++|++||.++|+ ||| || |+++ + .+.+
T Consensus 30 ~li~l~~v~v~r~-gk~--------iL~~isW~V~~ge~W~I~--------G~NGsGKTTLL~l-------l----~~~~ 81 (257)
T COG1119 30 PLIELKNVSVRRN-GKK--------ILGDLSWQVNPGEHWAIV--------GPNGAGKTTLLSL-------L----TGEH 81 (257)
T ss_pred ceEEecceEEEEC-CEe--------eccccceeecCCCcEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence 4699999999995 444 999999999999999999 999 99 9999 8 8888
Q ss_pred ccCCceeec------------cCCCcEEEEcCcC---CCCCCCHHHHHccCCcchhhhhc-CCC---HHHHHHHHHHcCC
Q psy11400 155 PLFGGTVTK------------PPRGKLFYVPQRP---YMTLGTLRDQVIYPHTKEDMIQK-GIT---DADLTEYLQKVQL 215 (298)
Q Consensus 155 ~~~~G~i~~------------~~r~~i~~v~Q~~---~l~~~tv~eni~~~~~~~~~~~~-~~~---~~~i~~~l~~~~l 215 (298)
+|.+|.+.. ..|++||+|.-.- +....+++|-++-+......... ..+ .+++..+++.+++
T Consensus 82 ~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~ 161 (257)
T COG1119 82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161 (257)
T ss_pred CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcch
Confidence 888887642 3478899997432 33456788877644321111111 223 3467788999999
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-----CcEEEEEecC
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-----GITLFTVSHR 290 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-----~~TiIiitH~ 290 (298)
.++.+++ ..+||-|||||+-|||||+++|++|||||||+|||...++.+.+.+.+. +.++|+|||.
T Consensus 162 ~~la~r~---------~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 162 KHLADRP---------FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred hhhccCc---------hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 8887775 5799999999999999999999999999999999999999888887762 6789999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
.+.+.
T Consensus 233 ~eEi~ 237 (257)
T COG1119 233 AEEIP 237 (257)
T ss_pred hhhcc
Confidence 87653
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3e-28 Score=246.63 Aligned_cols=177 Identities=19% Similarity=0.188 Sum_probs=138.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++||++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~i~~ls~~~~~-~~--------il~~is~~i~~Ge~v~Lv--------G~NGsGKSTLLri-------i----aG~~~ 54 (635)
T PRK11147 3 LISIHGAWLSFSD-AP--------LLDNAELHIEDNERVCLV--------GRNGAGKSTLMKI-------L----NGEVL 54 (635)
T ss_pred EEEEeeEEEEeCC-ce--------eEeCcEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCC
Confidence 5899999999963 34 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCc--------------------chhh----------hh---cCC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHT--------------------KEDM----------IQ---KGI 201 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~--------------------~~~~----------~~---~~~ 201 (298)
|++|+|.......++|++|.+.. ..+++.+++..+.. ..+. .. ...
T Consensus 55 p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (635)
T PRK11147 55 LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ 134 (635)
T ss_pred CCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCccc
Confidence 99999986544458999998643 23566665431110 0000 00 001
Q ss_pred CHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcC
Q psy11400 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVG 281 (298)
Q Consensus 202 ~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~ 281 (298)
...++.++++.+++.. ++ .+.+|||||||||+|||||+.+|++|||||||++||+.+..++.+++++.+
T Consensus 135 ~~~~~~~~l~~lgl~~--~~---------~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~ 203 (635)
T PRK11147 135 LENRINEVLAQLGLDP--DA---------ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ 203 (635)
T ss_pred HHHHHHHHHHhCCCCC--CC---------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC
Confidence 1345566677766641 22 367999999999999999999999999999999999999999999999877
Q ss_pred cEEEEEecCcchhh
Q psy11400 282 ITLFTVSHRKSLWT 295 (298)
Q Consensus 282 ~TiIiitH~l~~~~ 295 (298)
.|||+|||+...+.
T Consensus 204 ~tvlivsHd~~~l~ 217 (635)
T PRK11147 204 GSIIFISHDRSFIR 217 (635)
T ss_pred CEEEEEeCCHHHHH
Confidence 89999999998764
No 344
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=3.7e-28 Score=199.62 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=138.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
++.++||+...+. .- .|.|+||+|.+||++.++ ||| || |+.. + .|...
T Consensus 2 ~l~l~nvsl~l~g-~c--------LLa~~n~Tia~GeivtlM--------GPSGcGKSTLls~-------~----~G~La 53 (213)
T COG4136 2 MLCLKNVSLRLPG-SC--------LLANVNFTIAKGEIVTLM--------GPSGCGKSTLLSW-------M----IGALA 53 (213)
T ss_pred ceeeeeeeecCCC-ce--------EEEeeeEEecCCcEEEEE--------CCCCccHHHHHHH-------H----Hhhcc
Confidence 5789999988863 33 799999999999999999 999 99 6655 4 33322
Q ss_pred c---CCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 L---FGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~---~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
+ .+|++.. ..++++|++||++++|+ .+|.+|+.|.....-. .......+..++++.++..+..+.
T Consensus 54 ~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~K--G~aRr~~a~aAL~~~gL~g~f~~d 131 (213)
T COG4136 54 GQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLK--GNARRNAANAALERSGLDGAFHQD 131 (213)
T ss_pred cCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcccc--cHHHHhhHHHHHHHhccchhhhcC
Confidence 1 3466532 23678999999999886 6999999986532211 122345577889999998877663
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH----HHHhcCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~----~l~~~~~TiIiitH~l~~~~ 295 (298)
+.+||||||-||++-|+|+..|+.++||||+|.||...+.++.+ .++..|..+|.||||..-+.
T Consensus 132 ---------P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 132 ---------PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred ---------hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 67999999999999999999999999999999999976665554 45567999999999987543
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=4.9e-28 Score=262.04 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=142.9
Q ss_pred cEEEeeeeEecCC--CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRS--GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~--~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.++++||++.|+. +.. .+|+|+|+++++|++++|+ ||| || |+++ | +|+
T Consensus 759 ~l~~~nl~~~~~~~~~~~-------~iL~~vs~~i~~Ge~~aI~--------G~sGaGKSTLL~~-------L----ag~ 812 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKR-------VILNNVDGWVKPGTLTALM--------GASGAGKTTLLNV-------L----AER 812 (1394)
T ss_pred eEEEEeeEEEecCCCCCc-------EeeeCCEEEEECCEEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 4789999999852 122 2999999999999999999 999 99 9999 7 887
Q ss_pred cc---cCCceeecc-------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchh--hhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 154 WP---LFGGTVTKP-------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 154 ~~---~~~G~i~~~-------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~--~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
.+ +++|+|... .++.++||+|++.+ +..|++||+.+...... ........+.++++++.+++.+..+
T Consensus 813 ~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d 892 (1394)
T TIGR00956 813 VTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD 892 (1394)
T ss_pred CCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC
Confidence 76 678987532 35679999999764 56799999987431110 0000011345788999999976654
Q ss_pred hcCCcccccc-cCCCCChhHHHHHHHHHHHhcCCC-EEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 221 REKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQ-FAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 221 ~~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~-iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
.. .+ .+..||||||||++|||||+.+|+ +|+|||||||||+.+...+.+.+++ .|+|||+++|+++..
T Consensus 893 ~~------v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 893 AV------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI 965 (1394)
T ss_pred Ce------eCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Confidence 42 22 234899999999999999999997 9999999999999999999888765 489999999999853
No 346
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=7.7e-28 Score=212.54 Aligned_cols=157 Identities=14% Similarity=-0.012 Sum_probs=120.4
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee-ccCCCcEEEEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT-KPPRGKLFYVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~-~~~r~~i~~v~Q~~~l 178 (298)
+++|+||+|++|++++|+ ||| || |+++ + +|+++|++|++. ... . ...+.+++.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~--------G~NGsGKSTLlk~-------i----~Gl~~~~sG~i~~~~~-~-~~~~~~~~~l 60 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGIL--------AAPGSGKTTLTRL-------L----CGLDAPDEGDFIGLRG-D-ALPLGANSFI 60 (213)
T ss_pred eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCccCCCCCEEEecC-c-eecccccccc
Confidence 799999999999999999 999 99 9999 8 999999999986 322 1 1234456666
Q ss_pred CC-CCHHHHHccCCcchhhhhcCCCHHHHH-HHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400 179 TL-GTLRDQVIYPHTKEDMIQKGITDADLT-EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256 (298)
Q Consensus 179 ~~-~tv~eni~~~~~~~~~~~~~~~~~~i~-~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il 256 (298)
++ .|++||+.+..... .....++. .+.+..++....++ .+..||+|||||++|||||+.+|+++
T Consensus 61 ~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~---------~~~~lS~G~~qrv~la~al~~~p~ll 126 (213)
T PRK15177 61 LPGLTGEENARMMASLY-----GLDGDEFSHFCYQLTQLEQCYTD---------RVSEYSVTMKTHLAFAINLLLPCRLY 126 (213)
T ss_pred CCcCcHHHHHHHHHHHc-----CCCHHHHHHHHHHHhChhHHhhc---------hHhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 65 59999998743211 12222222 22344555544333 36789999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 257 ILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 257 iLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
||||||+++|+.+...+.+.+.+ .+.|+|++||+++.+.
T Consensus 127 llDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~ 167 (213)
T PRK15177 127 IADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIK 167 (213)
T ss_pred EECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHH
Confidence 99999999999999888886643 3679999999998764
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=4.4e-28 Score=242.94 Aligned_cols=165 Identities=24% Similarity=0.244 Sum_probs=134.2
Q ss_pred eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
++++.|..... +|++++ .+++|++++|+ ||| || |+++ | +|+++|+.|+
T Consensus 78 ~~~~~yg~~~~--------~L~~l~-~i~~Gev~gLv--------G~NGaGKSTLlki-------L----~G~l~p~~G~ 129 (590)
T PRK13409 78 EPVHRYGVNGF--------KLYGLP-IPKEGKVTGIL--------GPNGIGKTTAVKI-------L----SGELIPNLGD 129 (590)
T ss_pred CceEEecCCce--------eEecCC-cCCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCccCCCcc
Confidence 47788853334 899999 99999999999 999 99 9999 8 9999999999
Q ss_pred ee-----------cc-------------CCCcEEEEcC----cCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400 161 VT-----------KP-------------PRGKLFYVPQ----RPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212 (298)
Q Consensus 161 i~-----------~~-------------~r~~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 212 (298)
|. .. .+.++++.+| .|.++.+|+.|++.+. ...+++.++++.
T Consensus 130 i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~ 199 (590)
T PRK13409 130 YEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVER 199 (590)
T ss_pred ccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHH
Confidence 85 10 1123555555 4445667999998641 123567889999
Q ss_pred cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11400 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHR 290 (298)
Q Consensus 213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~ 290 (298)
+++.+..+++ +.+||||||||++||+||+.+|+++|||||||+||+.....+.+.+++. ++|+|+|||+
T Consensus 200 l~l~~~~~~~---------~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd 270 (590)
T PRK13409 200 LGLENILDRD---------ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHD 270 (590)
T ss_pred cCCchhhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9997766553 6799999999999999999999999999999999999999998887764 8999999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
++.+..
T Consensus 271 ~~~l~~ 276 (590)
T PRK13409 271 LAVLDY 276 (590)
T ss_pred HHHHHH
Confidence 987654
No 348
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-28 Score=209.18 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=148.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++||++.|. .+. +++++|++|++|.+++++ ||| || |+.+ . +++.+
T Consensus 1 MI~i~nv~K~y~-~~~--------vl~~isl~i~~g~iTs~I--------GPNGAGKSTLLS~-------~----sRL~~ 52 (252)
T COG4604 1 MITIENVSKSYG-TKV--------VLDDVSLDIPKGGITSII--------GPNGAGKSTLLSM-------M----SRLLK 52 (252)
T ss_pred CeeehhhhHhhC-CEE--------eeccceeeecCCceeEEE--------CCCCccHHHHHHH-------H----HHhcc
Confidence 478999999995 344 999999999999999999 999 99 8888 7 88999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcC-CCHHHHHHHHHHcCCchhhhhc
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKG-ITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~-~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
.++|+|+.. ..++++.+-|+..+- ..||+|-+.|+..++...+.. .+...+.++++.++|.++.++.
T Consensus 53 ~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry 132 (252)
T COG4604 53 KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY 132 (252)
T ss_pred ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh
Confidence 999998642 245688888988664 569999999987544222222 2345688999999998888773
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecCcchhhhc
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~l~~~~~~ 297 (298)
..+||||||||.-||..++++.++++||||.++||..-...+++.++ +.|+|+++|-||.+.+..|
T Consensus 133 ---------Ld~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 133 ---------LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred ---------HHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 56899999999999999999999999999999999876666666554 4699999999999988765
No 349
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=7.4e-28 Score=225.52 Aligned_cols=145 Identities=26% Similarity=0.311 Sum_probs=117.2
Q ss_pred CCC--cc--eeecCccCccccccccccccccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh
Q psy11400 130 PPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED 195 (298)
Q Consensus 130 G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~ 195 (298)
||| || |+++ + +|+++|++|+|... .+++++|+||++.+|. .|+++|+.++.....
T Consensus 3 G~nGsGKSTLl~~-------i----aGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 71 (325)
T TIGR01187 3 GPSGCGKTTLLRL-------L----AGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK 71 (325)
T ss_pred CCCCCCHHHHHHH-------H----HCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC
Confidence 999 99 9999 8 99999999998531 2457999999998775 599999988642110
Q ss_pred hhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH
Q psy11400 196 MIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275 (298)
Q Consensus 196 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~ 275 (298)
. ......+++.++++.+++.++.++. +.+||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 72 ~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~ 141 (325)
T TIGR01187 72 V-PRAEIKPRVLEALRLVQLEEFADRK---------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL 141 (325)
T ss_pred C-CHHHHHHHHHHHHHHcCCcchhcCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH
Confidence 0 0001134677889999998766653 67999999999999999999999999999999999999999888
Q ss_pred HHHh----cCcEEEEEecCcchhh
Q psy11400 276 YCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 276 ~l~~----~~~TiIiitH~l~~~~ 295 (298)
.+++ .++|+|+|||+++.+.
T Consensus 142 ~l~~l~~~~g~tiiivTHd~~e~~ 165 (325)
T TIGR01187 142 ELKTIQEQLGITFVFVTHDQEEAM 165 (325)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHH
Confidence 7754 3899999999998654
No 350
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.94 E-value=2e-27 Score=239.90 Aligned_cols=164 Identities=23% Similarity=0.199 Sum_probs=130.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC---Cceeecc--------CCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF---GGTVTKP--------PRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~---~G~i~~~--------~r~~ 168 (298)
+|+|+|+++++||.++|+ ||| || |+++ | +|..++. +|+|... .++.
T Consensus 40 iL~~vs~~i~~Ge~~aI~--------G~sGsGKSTLL~~-------L----~g~~~~~~~~~G~i~~~g~~~~~~~~~~~ 100 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVM--------GSSGAGKTTLMNA-------L----AFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100 (617)
T ss_pred cccCCEEEEeCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCcceeEEEECCEECCHHHHhhh
Confidence 999999999999999999 999 99 9999 7 7777664 6877532 2457
Q ss_pred EEEEcCcCCCCC-CCHHHHHccCCcchhh--hhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc---cCCCCChhHHHH
Q psy11400 169 LFYVPQRPYMTL-GTLRDQVIYPHTKEDM--IQKGITDADLTEYLQKVQLGYILNREKGWDTVAD---WIDVLSGGEKQR 242 (298)
Q Consensus 169 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~---~~~~LSgGqkQR 242 (298)
++||+|++.+++ .||+||+.|+...... .......++++++++.+++.+..+. ..+ +...||||||||
T Consensus 101 i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t------~vg~~~~~~~LSgGqrkR 174 (617)
T TIGR00955 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT------RIGVPGRVKGLSGGERKR 174 (617)
T ss_pred ceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcC------ccCCCCCCCCcCcchhhH
Confidence 999999998774 6999999875421100 0001123467888999998765433 332 235799999999
Q ss_pred HHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 243 VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 243 laiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
++|||+|+.+|++++|||||||||+.+...+.+.+++ .|+|+|+++|+++
T Consensus 175 vsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 175 LAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred HHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 9999999999999999999999999999999888765 3899999999986
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=5.8e-27 Score=201.27 Aligned_cols=125 Identities=21% Similarity=0.152 Sum_probs=107.8
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
.|+++.|.+ .. ++++ +|++++||+++|+ ||| || |+++ + +|+++|++|
T Consensus 4 ~~l~~~~~~-~~--------~l~~-~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~p~~G 54 (177)
T cd03222 4 PDCVKRYGV-FF--------LLVE-LGVVKEGEVIGIV--------GPNGTGKTTAVKI-------L----AGQLIPNGD 54 (177)
T ss_pred CCeEEEECC-EE--------EEcc-CcEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCCCCCc
Confidence 578888853 33 7888 4999999999999 999 99 9999 8 999999999
Q ss_pred eeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400 160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE 239 (298)
Q Consensus 160 ~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq 239 (298)
+|.... ..++|+||++. |||||
T Consensus 55 ~i~~~g-~~i~~~~q~~~---------------------------------------------------------LSgGq 76 (177)
T cd03222 55 NDEWDG-ITPVYKPQYID---------------------------------------------------------LSGGE 76 (177)
T ss_pred EEEECC-EEEEEEcccCC---------------------------------------------------------CCHHH
Confidence 997543 34888887541 89999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT 295 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~ 295 (298)
|||++|||||+.+|++++|||||++||+.+.+.+.+.+++ . +.|+|++||+++.+.
T Consensus 77 ~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 9999999999999999999999999999999988887754 2 489999999998765
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=7e-26 Score=223.03 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=148.7
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+..++++|+++.|+++.. +++++||.|.+|++++|+ ||| || |+++ | .|.
T Consensus 319 ~~vl~~~~~~~~y~~~~~--------l~~~~s~~i~~g~riaii--------G~NG~GKSTLlk~-------l----~g~ 371 (530)
T COG0488 319 KLVLEFENVSKGYDGGRL--------LLKDLSFRIDRGDRIAIV--------GPNGAGKSTLLKL-------L----AGE 371 (530)
T ss_pred CeeEEEeccccccCCCce--------eecCceEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----hhh
Confidence 356899999999965544 899999999999999999 999 99 9999 7 888
Q ss_pred cccCCceeeccCCCcEEEEcCcCC-C-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccc
Q psy11400 154 WPLFGGTVTKPPRGKLFYVPQRPY-M-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVAD 230 (298)
Q Consensus 154 ~~~~~G~i~~~~r~~i~~v~Q~~~-l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~ 230 (298)
..|.+|+|.....-++||.+|+.. + ...|+.|++.-.. ....+..+...|..+++.. ...+
T Consensus 372 ~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~-------~~~~e~~~r~~L~~f~F~~~~~~~--------- 435 (530)
T COG0488 372 LGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGF-------PDGDEQEVRAYLGRFGFTGEDQEK--------- 435 (530)
T ss_pred cccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhC-------ccccHHHHHHHHHHcCCChHHHhC---------
Confidence 888899998766678999999973 3 3458888886432 1222677899999999864 2223
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
.+..||||||-|+.+|+.++.+|.+|||||||+.||.++.+.+.+.+.+..-|||+||||..++.
T Consensus 436 ~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 436 PVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred chhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 36799999999999999999999999999999999999999999999999889999999998765
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=8.8e-27 Score=252.28 Aligned_cols=189 Identities=17% Similarity=0.122 Sum_probs=141.7
Q ss_pred cEEEeeeeEecCCCCC--CCC--CCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400 80 LRGRLGITLGLRSGGL--GFD--SRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD 151 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~--~~~--~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~ 151 (298)
.+.++||++..+.... ..+ .....+|+|+|+++++|++++|+ ||| || |+++ | +
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~--------G~sGaGKTTLL~~-------L----a 927 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALM--------GVSGAGKTTLMDV-------L----A 927 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEE--------CCCCCCHHHHHHH-------H----c
Confidence 5899999998742110 000 01124999999999999999999 999 99 9999 7 7
Q ss_pred cccc--cCCceeecc--------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCc
Q psy11400 152 QLWP--LFGGTVTKP--------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLG 216 (298)
Q Consensus 152 ~l~~--~~~G~i~~~--------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~ 216 (298)
|..+ +.+|+|... .++.+|||+|++.++ ..|++||+.++..... ....+ .+.++++++.++|.
T Consensus 928 G~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~--~~~~~~~~~~~~v~~vl~~lgL~ 1005 (1470)
T PLN03140 928 GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRL--PKEVSKEEKMMFVDEVMELVELD 1005 (1470)
T ss_pred CCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHHHCCCh
Confidence 7654 257877532 235699999998765 4699999987531100 01111 23578899999998
Q ss_pred hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
+..+..-|. ..+..|||||||||+|||+|+.+|++|+|||||||||+.+...+.+.+++ .|+|||+++|+++.
T Consensus 1006 ~~~~~~vg~----~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1006 NLKDAIVGL----PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred hHhCCccCC----CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 765543211 01368999999999999999999999999999999999999999888765 48999999999984
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.2e-26 Score=191.13 Aligned_cols=126 Identities=27% Similarity=0.379 Sum_probs=106.3
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
++|+++.|++ .. +++++||++++|++++|+ |+| || |+++ + .|+++|++
T Consensus 2 ~~~~~~~~~~-~~--------~l~~~~~~i~~g~~~~i~--------G~nGsGKStll~~-------l----~g~~~~~~ 53 (157)
T cd00267 2 IENLSFRYGG-RT--------ALDNVSLTLKAGEIVALV--------GPNGSGKSTLLRA-------I----AGLLKPTS 53 (157)
T ss_pred eEEEEEEeCC-ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCc
Confidence 6789999964 33 899999999999999999 999 99 9999 8 99999999
Q ss_pred ceeeccCC-----------CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 159 GTVTKPPR-----------GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 159 G~i~~~~r-----------~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
|++..... +.++|+||
T Consensus 54 G~i~~~~~~~~~~~~~~~~~~i~~~~q----------------------------------------------------- 80 (157)
T cd00267 54 GEILIDGKDIAKLPLEELRRRIGYVPQ----------------------------------------------------- 80 (157)
T ss_pred cEEEECCEEcccCCHHHHHhceEEEee-----------------------------------------------------
Confidence 98764321 11222222
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
||+||+||++||||++.+|++++|||||++||..+...+.+.+++ .++|+|++||+++.+..
T Consensus 81 -------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 81 -------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999998887764 25899999999987654
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=4.9e-26 Score=195.39 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=102.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------CCCcEEEEc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------PRGKLFYVP 173 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------~r~~i~~v~ 173 (298)
+++|+||++++|++++|+ ||| || |+++ + . +++|++... .+..++|++
T Consensus 10 ~l~~isl~i~~G~~~~l~--------G~nG~GKSTLl~~-------i----l----~~~G~v~~~~~~~~~~~~~~~~~~ 66 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVT--------GVSGSGKSTLVNE-------G----L----YASGKARLISFLPKFSRNKLIFID 66 (176)
T ss_pred eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----h----hcCCcEEECCcccccccccEEEEh
Confidence 899999999999999999 999 99 8887 4 2 246665421 112244443
Q ss_pred CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400 174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252 (298)
Q Consensus 174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~ 252 (298)
| .++++.+++.+. .++ ++.+||||||||++||||++.+
T Consensus 67 q--------------------------------~~~l~~~~L~~~~~~~---------~~~~LSgGq~qrl~laral~~~ 105 (176)
T cd03238 67 Q--------------------------------LQFLIDVGLGYLTLGQ---------KLSTLSGGELQRVKLASELFSE 105 (176)
T ss_pred H--------------------------------HHHHHHcCCCccccCC---------CcCcCCHHHHHHHHHHHHHhhC
Confidence 3 345677777542 222 4679999999999999999999
Q ss_pred --CCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 253 --PQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 253 --P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
|+++||||||++||+...+.+.+.+++ .|+|||++||+++.+..
T Consensus 106 ~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999999999999999998887765 48999999999987653
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=1.9e-25 Score=227.98 Aligned_cols=176 Identities=17% Similarity=0.165 Sum_probs=123.0
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|+++|+++.|+ +.. +|+|+||+|++|++++|+ |+| || |+++ + +|..
T Consensus 176 ~~I~i~nls~~y~-~~~--------ll~~isl~i~~Ge~~gLv--------G~NGsGKSTLLr~-------l----~g~~ 227 (718)
T PLN03073 176 KDIHMENFSISVG-GRD--------LIVDASVTLAFGRHYGLV--------GRNGTGKTTFLRY-------M----AMHA 227 (718)
T ss_pred eeEEEceEEEEeC-CCE--------EEECCEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence 4699999999995 334 899999999999999999 999 99 9999 7 5542
Q ss_pred ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCc-------------chh----------------hh--hcC---
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT-------------KED----------------MI--QKG--- 200 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-------------~~~----------------~~--~~~--- 200 (298)
+ .| .+....|+|++|++.....|+.+.+.-... ... .. ...
T Consensus 228 -~-~g---~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~ 302 (718)
T PLN03073 228 -I-DG---IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVS 302 (718)
T ss_pred -C-CC---CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHH
Confidence 1 12 122334778888753333344322110000 000 00 000
Q ss_pred ----------------CCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400 201 ----------------ITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263 (298)
Q Consensus 201 ----------------~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs 263 (298)
..++++.+++..+++. +..++ .+.+||||||||++|||||+.+|++|||||||+
T Consensus 303 ~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~---------~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~ 373 (718)
T PLN03073 303 QRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK---------ATKTFSGGWRMRIALARALFIEPDLLLLDEPTN 373 (718)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC---------chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 0112333444444443 12222 367999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 264 AVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 264 ~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+||+....++.+++++.+.|+|+|||+...+..
T Consensus 374 ~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~ 406 (718)
T PLN03073 374 HLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT 406 (718)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 999999999999999989999999999987653
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=189.32 Aligned_cols=175 Identities=25% Similarity=0.362 Sum_probs=136.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+++.++|..|... . -.+|+||.+.|||.++|+ |+| || |+++ + .+-.+
T Consensus 6 LL~V~~lsk~Yg~~-~--------gc~~vsF~l~PGeVLgiV--------GESGSGKtTLL~~-------i----s~rl~ 57 (258)
T COG4107 6 LLSVSGLSKLYGPG-K--------GCRDVSFDLYPGEVLGIV--------GESGSGKTTLLKC-------I----SGRLT 57 (258)
T ss_pred ceeehhhhhhhCCC-c--------CccccceeecCCcEEEEE--------ecCCCcHHhHHHH-------H----hcccC
Confidence 58899999999533 3 689999999999999999 999 99 8888 7 77788
Q ss_pred cCCceeecc--------------------CCCcEEEEcCcCC--C----CC-CCHHHHHc-cCCcchhhhhcCCCHHHHH
Q psy11400 156 LFGGTVTKP--------------------PRGKLFYVPQRPY--M----TL-GTLRDQVI-YPHTKEDMIQKGITDADLT 207 (298)
Q Consensus 156 ~~~G~i~~~--------------------~r~~i~~v~Q~~~--l----~~-~tv~eni~-~~~~~~~~~~~~~~~~~i~ 207 (298)
|+.|++... .|...|||.|+|. + .. +.+-|-+. .+... .+.-.+...
T Consensus 58 p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-----YG~iR~~a~ 132 (258)
T COG4107 58 PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-----YGNIRAEAQ 132 (258)
T ss_pred CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-----hhhHHHHHH
Confidence 999997521 1446899999994 1 11 23333322 11111 122245677
Q ss_pred HHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcE
Q psy11400 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGIT 283 (298)
Q Consensus 208 ~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~T 283 (298)
++++.+.++ .+..++.+.++|||||||+.|||-|+..|+++++||||.|||...+..+.++++ +.+.+
T Consensus 133 ~WL~~VEI~--------~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la 204 (258)
T COG4107 133 DWLEEVEID--------LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLA 204 (258)
T ss_pred HHHHhcccC--------cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCce
Confidence 889988885 234455688999999999999999999999999999999999999999988776 46899
Q ss_pred EEEEecCcchhh
Q psy11400 284 LFTVSHRKSLWT 295 (298)
Q Consensus 284 iIiitH~l~~~~ 295 (298)
++++||++..++
T Consensus 205 ~viVTHDl~Var 216 (258)
T COG4107 205 VVIVTHDLAVAR 216 (258)
T ss_pred EEEEechhHHHH
Confidence 999999998765
No 358
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=4.6e-25 Score=188.35 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=143.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||+++|. +-. +++|+||++.+||.-+|+ ||| || ++.+ + .|--+
T Consensus 5 iL~~~~vsVsF~-GF~--------Aln~ls~~v~~Gelr~lI--------GpNGAGKTT~mD~-------I----tGKtr 56 (249)
T COG4674 5 ILYLDGVSVSFG-GFK--------ALNDLSFSVDPGELRVLI--------GPNGAGKTTLMDV-------I----TGKTR 56 (249)
T ss_pred eEEEeceEEEEc-cee--------eeeeeEEEecCCeEEEEE--------CCCCCCceeeeee-------e----cccCC
Confidence 578999999994 323 999999999999999999 999 99 8888 7 88888
Q ss_pred cCCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh-------hcCCCHHHHHHHHHHcC
Q psy11400 156 LFGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-------QKGITDADLTEYLQKVQ 214 (298)
Q Consensus 156 ~~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-------~~~~~~~~i~~~l~~~~ 214 (298)
|+.|++... .|..||-=||.|..|. .||+||+-......... ......++++++|...+
T Consensus 57 p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~ig 136 (249)
T COG4674 57 PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIG 136 (249)
T ss_pred CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcc
Confidence 999987531 2456899999998875 59999997643211100 11223457999999999
Q ss_pred CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS 292 (298)
Q Consensus 215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~ 292 (298)
|.+..++. ...||.||||++.|+..++++|++|+||||++|+..+.....-++++. ..++|++|.||+.
T Consensus 137 L~~~~~~~---------A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~ 207 (249)
T COG4674 137 LGDERDRL---------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMG 207 (249)
T ss_pred cchhhhhh---------hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHH
Confidence 98777664 468999999999999999999999999999999965555555555554 3789999999999
Q ss_pred hhhh
Q psy11400 293 LWTH 296 (298)
Q Consensus 293 ~~~~ 296 (298)
.++.
T Consensus 208 Fvr~ 211 (249)
T COG4674 208 FVRE 211 (249)
T ss_pred HHHH
Confidence 8764
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.5e-25 Score=188.03 Aligned_cols=159 Identities=24% Similarity=0.255 Sum_probs=131.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC----------CCcE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP----------RGKL 169 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~----------r~~i 169 (298)
++.++||++.+||.+-|. ||| || |+|+ + +|+..|.+|+|.... ++.+
T Consensus 17 lf~~L~f~l~~Ge~~~i~--------G~NG~GKTtLLRi-------l----aGLl~p~~G~v~~~~~~i~~~~~~~~~~l 77 (209)
T COG4133 17 LFSDLSFTLNAGEALQIT--------GPNGAGKTTLLRI-------L----AGLLRPDAGEVYWQGEPIQNVRESYHQAL 77 (209)
T ss_pred eecceeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HcccCCCCCeEEecCCCCccchhhHHHHH
Confidence 899999999999999999 999 99 9999 8 999999999986321 1345
Q ss_pred EEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400 170 FYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 170 ~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa 248 (298)
-|+--++-+ ...|++||+.|-.... ...+.+.+.++++.++|..+.+.| ..+||-|||+||+|||.
T Consensus 78 ~yLGH~~giK~eLTa~ENL~F~~~~~----~~~~~~~i~~Al~~vgL~g~~dlp---------~~~LSAGQqRRvAlArL 144 (209)
T COG4133 78 LYLGHQPGIKTELTALENLHFWQRFH----GSGNAATIWEALAQVGLAGLEDLP---------VGQLSAGQQRRVALARL 144 (209)
T ss_pred HHhhccccccchhhHHHHHHHHHHHh----CCCchhhHHHHHHHcCcccccccc---------hhhcchhHHHHHHHHHH
Confidence 566555545 4569999998743211 123567899999999998877765 67999999999999999
Q ss_pred HhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 249 FYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
.+..++++||||||++||.+....+-.++.. .|-.||.+||...-+
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 9999999999999999999999888777654 477899999987543
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.92 E-value=6.4e-25 Score=237.96 Aligned_cols=167 Identities=15% Similarity=0.125 Sum_probs=127.7
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc----ccCCceeecc----------
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW----PLFGGTVTKP---------- 164 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~----~~~~G~i~~~---------- 164 (298)
.+|+|+|+.+++||+++|+ ||| || |+++ | +|.. +|.+|+|...
T Consensus 75 ~iL~~vs~~i~~Ge~~aIl--------G~nGsGKSTLLk~-------L----aG~~~~~~~~~~G~I~~~G~~~~~~~~~ 135 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVL--------GRPGSGCSTLLKT-------I----ASNTDGFHIGVEGVITYDGITPEEIKKH 135 (1394)
T ss_pred eeeeCCEEEEECCEEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCCCceeEEEECCEehHHHHhh
Confidence 4999999999999999999 999 99 9999 7 6654 5688988531
Q ss_pred CCCcEEEEcCcCCCC-CCCHHHHHccCCcchh--hhhcCCCH----HH-HHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400 165 PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKED--MIQKGITD----AD-LTEYLQKVQLGYILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 165 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~--~~~~~~~~----~~-i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS 236 (298)
.++.++||+|++.++ ..|++|++.++..... ........ ++ .+.+++.++|.+..+..-| ......||
T Consensus 136 ~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg----~~~~~~LS 211 (1394)
T TIGR00956 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG----NDFVRGVS 211 (1394)
T ss_pred cCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC----CCcCCCCC
Confidence 245699999998765 4699999987532100 00001111 12 3457888999765543211 12457899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS 292 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~ 292 (298)
|||||||+||+||+.+|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++
T Consensus 212 GGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~ 271 (1394)
T TIGR00956 212 GGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS 271 (1394)
T ss_pred cccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 9999999999999999999999999999999999988887764 3899999999974
No 361
>KOG0061|consensus
Probab=99.91 E-value=2.2e-24 Score=216.89 Aligned_cols=186 Identities=20% Similarity=0.151 Sum_probs=142.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+.++|++...+.... ....+|+|||.++++||.+||+ ||| || |+++ + +|-.+
T Consensus 25 ~~~~~~~~~~~~~~~~----~~k~iL~~vsg~~~~Gel~Aim--------G~SGsGKtTLL~~-------L----agr~~ 81 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK----KTKTILKGVSGTAKPGELLAIM--------GPSGSGKTTLLNA-------L----AGRLN 81 (613)
T ss_pred eeEEEEEEEEecCCCC----ccceeeeCcEEEEecCeEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence 5789999988764420 1123999999999999999999 999 99 8888 6 55543
Q ss_pred ---cCCceeecc--------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhh--hhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 ---LFGGTVTKP--------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDM--IQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ---~~~G~i~~~--------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
..+|+|... .++..|||.|+..++ ..||+|++.|.....-. ......+++++++++.+++.+..+.
T Consensus 82 ~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t 161 (613)
T KOG0061|consen 82 GGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADT 161 (613)
T ss_pred CCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccc
Confidence 356777543 256799999998765 56999999875321100 0111235678999999999865544
Q ss_pred cCCcccccc--cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 222 EKGWDTVAD--WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 222 ~~g~d~~~~--~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
..+ ....+|||||+||+||.-++++|.+|+|||||||||..+..++.+.+++ .|+|||++=|+++.-
T Consensus 162 ------~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~ 233 (613)
T KOG0061|consen 162 ------LIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSE 233 (613)
T ss_pred ------eecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHH
Confidence 222 1257999999999999999999999999999999999988888877764 499999999999753
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=6.6e-24 Score=189.13 Aligned_cols=81 Identities=28% Similarity=0.397 Sum_probs=68.1
Q ss_pred HHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---c
Q psy11400 207 TEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---V 280 (298)
Q Consensus 207 ~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~ 280 (298)
.+.++.+++.+. .++ .+.+||||||||++|||||+.+| +++||||||++||+.+...+.+.+++ .
T Consensus 118 ~~~l~~~~l~~~~~~~---------~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 188 (226)
T cd03270 118 LGFLVDVGLGYLTLSR---------SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL 188 (226)
T ss_pred HHHHHHCCCCcccccC---------ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC
Confidence 567788887642 333 47899999999999999999998 59999999999999999988887754 4
Q ss_pred CcEEEEEecCcchhhh
Q psy11400 281 GITLFTVSHRKSLWTH 296 (298)
Q Consensus 281 ~~TiIiitH~l~~~~~ 296 (298)
|.|+|+|||+++.+..
T Consensus 189 g~tii~itH~~~~~~~ 204 (226)
T cd03270 189 GNTVLVVEHDEDTIRA 204 (226)
T ss_pred CCEEEEEEeCHHHHHh
Confidence 8999999999987653
No 363
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=3e-24 Score=181.81 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=140.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|....--++.....+++.+||++++|+.+|++ |.| || |.++ + +|+.+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiI--------G~NGSGKSTLakM-------l----aGmi~ 64 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAII--------GENGSGKSTLAKM-------L----AGMIE 64 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEE--------ccCCCcHhHHHHH-------H----hcccC
Confidence 356778877664221111222334899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCC-CC--CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhh
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TL--GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILN 220 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~ 220 (298)
|++|+|... ..++|-++||+|.- ++ ..+-..+-.|.............+++.+-++.+|+-. ..+
T Consensus 65 PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan 144 (267)
T COG4167 65 PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN 144 (267)
T ss_pred CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc
Confidence 999998532 24679999999963 32 2333333344322111112223467888899999842 222
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~~ 296 (298)
- ++..||.|||||||+||||+.+|+++|.||+.++||...+.++.++. .+.|.+.|.|+.++..++|
T Consensus 145 ~---------~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKH 215 (267)
T COG4167 145 Y---------YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKH 215 (267)
T ss_pred c---------chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhh
Confidence 1 46789999999999999999999999999999999999888877653 3469999999999999887
Q ss_pred c
Q psy11400 297 H 297 (298)
Q Consensus 297 ~ 297 (298)
.
T Consensus 216 i 216 (267)
T COG4167 216 I 216 (267)
T ss_pred h
Confidence 4
No 364
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.6e-25 Score=184.71 Aligned_cols=179 Identities=22% Similarity=0.248 Sum_probs=133.5
Q ss_pred cEEEeeeeEecC----CC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400 80 LRGRLGITLGLR----SG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR 150 (298)
Q Consensus 80 ~i~~~~v~~~~~----~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~ 150 (298)
.+.++|++++|- ++ ..+ +++|+||+++.||++.+- ||| || ++|+ +
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~Lp-------V~~~vslsV~aGECvvL~--------G~SG~GKStllr~-------L---- 57 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLP-------VLRNVSLSVNAGECVVLH--------GPSGSGKSTLLRS-------L---- 57 (235)
T ss_pred eeeeecchhheEeeecCCEEee-------eeeceeEEecCccEEEee--------CCCCCcHHHHHHH-------H----
Confidence 367777777662 22 123 999999999999999999 999 99 9998 7
Q ss_pred ccccccCCceeecc-------------------CCCcEEEEcCcCC-CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400 151 DQLWPLFGGTVTKP-------------------PRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210 (298)
Q Consensus 151 ~~l~~~~~G~i~~~-------------------~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 210 (298)
-+-|.|++|+|... .++.||||+|--. ++.-+-.|-+.-|...... .......+...++
T Consensus 58 YaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv-~~~~a~~~a~~Ll 136 (235)
T COG4778 58 YANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV-PREVARAKAADLL 136 (235)
T ss_pred HhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCC-CHHHHHHHHHHHH
Confidence 77788999997420 2467999999653 3333445555444321110 0111234567778
Q ss_pred HHcCCchhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400 211 QKVQLGYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT 286 (298)
Q Consensus 211 ~~~~l~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi 286 (298)
.++++.+-+ ..+ +.++||||||||.|||.|+.+-+||+|||||++||......+.+++.+ .|..+|=
T Consensus 137 ~rLnlperLW~La---------PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvG 207 (235)
T COG4778 137 TRLNLPERLWSLA---------PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVG 207 (235)
T ss_pred HHcCCCHHHhcCC---------CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEE
Confidence 888886532 332 689999999999999999999999999999999999999988888765 5999999
Q ss_pred EecCcchh
Q psy11400 287 VSHRKSLW 294 (298)
Q Consensus 287 itH~l~~~ 294 (298)
|=||.+.-
T Consensus 208 IFHDeevr 215 (235)
T COG4778 208 IFHDEEVR 215 (235)
T ss_pred eeccHHHH
Confidence 99997653
No 365
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=187.63 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=124.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~ 168 (298)
+|+++|++|.+|+++.|+ |.| || |++. + +|-.+|++|+|... ....
T Consensus 21 ~l~~~sL~I~~g~FvtVi--------GsNGAGKSTlln~-------i----aG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVI--------GSNGAGKSTLLNA-------I----AGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred HHhcCceeecCCceEEEE--------cCCCccHHHHHHH-------h----hCccccCCceEEECceecccCCHHHHhhH
Confidence 999999999999999999 999 99 9999 8 99999999998532 1245
Q ss_pred EEEEcCcCC---CCCCCHHHHHccCCcchhh--hhcCCC---HHHHHHHHHHcCCchhhhhcCCcccc-cccCCCCChhH
Q psy11400 169 LFYVPQRPY---MTLGTLRDQVIYPHTKEDM--IQKGIT---DADLTEYLQKVQLGYILNREKGWDTV-ADWIDVLSGGE 239 (298)
Q Consensus 169 i~~v~Q~~~---l~~~tv~eni~~~~~~~~~--~~~~~~---~~~i~~~l~~~~l~~~~~~~~g~d~~-~~~~~~LSgGq 239 (298)
++-|+|+|. ....|+.||+.......+. ...... .+...+-++.+++. ++.. ..+..-|||||
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg--------LenrL~~~iglLSGGQ 153 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG--------LENRLSDRIGLLSGGQ 153 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccc--------hhhhhcChhhhccchH
Confidence 888999996 3467999999864321100 000011 12233344444432 2221 22467899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchhh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~~ 295 (298)
||-++++.|.++.|++|+|||-|++|||.+...++++ ..+.+.|.++|||.+.-+-
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al 213 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL 213 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHH
Confidence 9999999999999999999999999999998888765 3446899999999987543
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=1.2e-24 Score=178.11 Aligned_cols=121 Identities=33% Similarity=0.514 Sum_probs=100.3
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCcE
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGKL 169 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~i 169 (298)
|+|+||+|++|++++|+ |+| || |+++ + .|+++|++|.|... .++.+
T Consensus 1 L~~v~~~i~~g~~~~i~--------G~nGsGKStLl~~-------l----~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 61 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIV--------GPNGSGKSTLLKA-------L----AGLLPPDSGSILINGKDISDIDIEELRRRI 61 (137)
T ss_dssp EEEEEEEEETTSEEEEE--------ESTTSSHHHHHHH-------H----TTSSHESEEEEEETTEEGTTSHHHHHHHTE
T ss_pred CCceEEEEcCCCEEEEE--------ccCCCccccceee-------e----cccccccccccccccccccccccccccccc
Confidence 68999999999999999 999 99 9999 8 99999999998532 25679
Q ss_pred EEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400 170 FYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 170 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa 248 (298)
+|++|++.++.. |+.+|. .++++.++++.+++.++.+.. .......||+|||||++||||
T Consensus 62 ~~~~~~~~~~~~~tv~~~~--------------~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~LS~Ge~~rl~la~a 122 (137)
T PF00005_consen 62 GYVPQDPQLFPGLTVRENE--------------SDERIEEVLKKLGLEDLLDRK-----IGQRASSLSGGEKQRLALARA 122 (137)
T ss_dssp EEEESSHCHHTTSBHHHHH--------------HHHHHHHHHHHTTHGGGTGSB-----GTSCGGGSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccc--------------ccccccccccccccccccccc-----cccccchhhHHHHHHHHHHHH
Confidence 999999877654 799981 235678888988887654432 112347999999999999999
Q ss_pred HhcCCCEEEEecccc
Q psy11400 249 FYHRPQFAILDECTS 263 (298)
Q Consensus 249 L~~~P~iliLDEPTs 263 (298)
|+++|+++||||||+
T Consensus 123 l~~~~~llllDEPt~ 137 (137)
T PF00005_consen 123 LLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHTTSSEEEEESTTT
T ss_pred HHcCCCEEEEeCCCC
Confidence 999999999999996
No 367
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=6.9e-24 Score=187.14 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=127.8
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCC-
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPY- 177 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~- 177 (298)
.+|+||||++++||.++|+ |+| || |+++ | +|+++|++|++... .+|+++..-..
T Consensus 41 ~aL~disf~i~~Ge~vGii--------G~NGaGKSTLlkl-------i----aGi~~Pt~G~v~v~--G~v~~li~lg~G 99 (249)
T COG1134 41 WALKDISFEIYKGERVGII--------GHNGAGKSTLLKL-------I----AGIYKPTSGKVKVT--GKVAPLIELGAG 99 (249)
T ss_pred EEecCceEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hCccCCCCceEEEc--ceEehhhhcccC
Confidence 4999999999999999999 999 99 9999 8 99999999998753 34555444332
Q ss_pred -CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400 178 -MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256 (298)
Q Consensus 178 -l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il 256 (298)
-+..|-+|||.+-....... ....++..++..+..+|.++++.| ..++|.||+-|+++|-|...+|++|
T Consensus 100 f~pelTGreNi~l~~~~~G~~-~~ei~~~~~eIieFaELG~fi~~P---------vktYSSGM~aRLaFsia~~~~pdIL 169 (249)
T COG1134 100 FDPELTGRENIYLRGLILGLT-RKEIDEKVDEIIEFAELGDFIDQP---------VKTYSSGMYARLAFSVATHVEPDIL 169 (249)
T ss_pred CCcccchHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHHHHHhhCc---------hhhccHHHHHHHHHhhhhhcCCCEE
Confidence 23458999997532111100 112245667778888899998886 7899999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400 257 ILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 257 iLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~ 296 (298)
|+||..+..|+.-.++-.+.+. +.+.|+|+|||+++.++.
T Consensus 170 llDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~ 212 (249)
T COG1134 170 LLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQ 212 (249)
T ss_pred EEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 9999999999976655444433 237999999999998874
No 368
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=182.32 Aligned_cols=183 Identities=22% Similarity=0.213 Sum_probs=141.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-- 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-- 153 (298)
+++++|++....+.+. +|+++||+|++||+.+|+ ||| || |.+. | +|.
T Consensus 3 ~L~I~dLhv~v~~~ke--------ILkgvnL~v~~GEvhaiM--------GPNGsGKSTLa~~-------i----~G~p~ 55 (251)
T COG0396 3 MLEIKDLHVEVEGKKE--------ILKGVNLTVKEGEVHAIM--------GPNGSGKSTLAYT-------I----MGHPK 55 (251)
T ss_pred eeEEeeeEEEecCchh--------hhcCcceeEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5889999998853223 999999999999999999 999 99 8877 5 553
Q ss_pred cccCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhh--cCCCHHHHHHHHHHcCCch-
Q psy11400 154 WPLFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQ--KGITDADLTEYLQKVQLGY- 217 (298)
Q Consensus 154 ~~~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~- 217 (298)
|.+++|+|... .|..|...+|.|.-++| ++.+.+........... ......+++++++.+++++
T Consensus 56 Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 135 (251)
T COG0396 56 YEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135 (251)
T ss_pred ceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH
Confidence 46788887531 35679999999986666 88888765432110000 0122467888999999986
Q ss_pred hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH---HHhcCcEEEEEecCcchh
Q psy11400 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY---CREVGITLFTVSHRKSLW 294 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~---l~~~~~TiIiitH~l~~~ 294 (298)
+++|.- ...+|||||+|..|+.+++.+|++.|||||-||||....+.+.+- +++.+.++++|||...+.
T Consensus 136 ~l~R~v--------N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll 207 (251)
T COG0396 136 FLERYV--------NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL 207 (251)
T ss_pred Hhhccc--------CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 666631 246999999999999999999999999999999999887776654 455699999999998876
Q ss_pred hhc
Q psy11400 295 THH 297 (298)
Q Consensus 295 ~~~ 297 (298)
.|.
T Consensus 208 ~~i 210 (251)
T COG0396 208 DYI 210 (251)
T ss_pred hhc
Confidence 653
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=5.8e-24 Score=230.46 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=127.5
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC---Cceeecc--------CCC
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF---GGTVTKP--------PRG 167 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~---~G~i~~~--------~r~ 167 (298)
.+|+|+|+.|++|++++|+ ||| || |+++ | +|..+|+ +|+|... .++
T Consensus 179 ~IL~~vs~~i~~Ge~~~ll--------GpnGSGKSTLLk~-------L----aG~l~~~~~~~G~I~~nG~~~~~~~~~~ 239 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLL--------GPPSSGKTTLLLA-------L----AGKLDPSLKVSGEITYNGYRLNEFVPRK 239 (1470)
T ss_pred eeccCCeEEEeCCeEEEEE--------cCCCCCHHHHHHH-------H----hCCCCCCCcceeEEEECCEechhhcccc
Confidence 4999999999999999999 999 99 9999 8 8888887 8988532 256
Q ss_pred cEEEEcCcCCCC-CCCHHHHHccCCcchh----------hhhcC-----CCH------------------HHHHHHHHHc
Q psy11400 168 KLFYVPQRPYMT-LGTLRDQVIYPHTKED----------MIQKG-----ITD------------------ADLTEYLQKV 213 (298)
Q Consensus 168 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~----------~~~~~-----~~~------------------~~i~~~l~~~ 213 (298)
.++||+|++.++ ..|++|++.|+..... ..... ..+ ..++.+++.+
T Consensus 240 ~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l 319 (1470)
T PLN03140 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL 319 (1470)
T ss_pred eeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc
Confidence 799999998665 5799999987532110 00000 000 1135577778
Q ss_pred CCchhhhhcCCccccc--ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400 214 QLGYILNREKGWDTVA--DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV 287 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~--~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii 287 (298)
||.+..+ +.+ .....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.+++ .|+|+|++
T Consensus 320 GL~~~~~------t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis 393 (1470)
T PLN03140 320 GLDICKD------TIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393 (1470)
T ss_pred CCccccC------ceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8765432 222 24578999999999999999999999999999999999999998887765 38899999
Q ss_pred ecCcc
Q psy11400 288 SHRKS 292 (298)
Q Consensus 288 tH~l~ 292 (298)
+|+++
T Consensus 394 ~Hqp~ 398 (1470)
T PLN03140 394 LLQPA 398 (1470)
T ss_pred ecCCC
Confidence 99974
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=2.9e-23 Score=181.34 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=105.1
Q ss_pred eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc---------eee--------cc
Q psy11400 106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG---------TVT--------KP 164 (298)
Q Consensus 106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G---------~i~--------~~ 164 (298)
++++|++++| +++|+ ||| || |+++ + .++.++..| ++. ..
T Consensus 14 ~~~~l~~~~g-~~~i~--------G~nGsGKStll~a-------l----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (197)
T cd03278 14 DKTTIPFPPG-LTAIV--------GPNGSGKSNIIDA-------I----RWVLGEQSAKSLRGEKMSDVIFAGSETRKPA 73 (197)
T ss_pred CCeeeecCCC-cEEEE--------CCCCCCHHHHHHH-------H----HHHhccccchhhcccCHHHHhccCCCCCCCC
Confidence 6789999999 99999 999 99 8888 5 555433322 221 11
Q ss_pred CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400 165 PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA 244 (298)
Q Consensus 165 ~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla 244 (298)
.+.+|+||||+|..+ |+.. ..+++.++++. .+..+ .++.+||||||||++
T Consensus 74 ~~~~v~~vfq~~~~~---------~~~~---------~~~~~~~~l~~---~~~~~---------~~~~~LS~G~kqrl~ 123 (197)
T cd03278 74 NFAEVTLTFDNSDGR---------YSII---------SQGDVSEIIEA---PGKKV---------QRLSLLSGGEKALTA 123 (197)
T ss_pred ceEEEEEEEEcCCCc---------eeEE---------ehhhHHHHHhC---CCccc---------cchhhcCHHHHHHHH
Confidence 246799999999655 2210 12345566655 22222 246789999999999
Q ss_pred HHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 245 MARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 245 iARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
|||+++ .+|++++|||||++||+.....+.+.+++. +.|+|+|||+++.+..
T Consensus 124 la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~ 181 (197)
T cd03278 124 LALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA 181 (197)
T ss_pred HHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence 999997 467999999999999999999999888763 7899999999987654
No 371
>KOG0059|consensus
Probab=99.88 E-value=3.6e-23 Score=216.04 Aligned_cols=180 Identities=18% Similarity=0.160 Sum_probs=147.7
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..+..+|+++.|+.... +++++||.|++||+.++. |+| || ++++ + .|..
T Consensus 563 ~~~~~~~L~k~y~~~~~--------Av~~ls~~V~~gecfgLL--------G~NGAGKtT~f~m-------l----tG~~ 615 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--------AVRGLSFAVPPGECFGLL--------GVNGAGKTTTFKM-------L----TGET 615 (885)
T ss_pred ceEEEcceeeeecchhh--------hhcceEEEecCCceEEEe--------cCCCCCchhhHHH-------H----hCCc
Confidence 46889999999965433 899999999999999999 999 99 9998 8 9999
Q ss_pred ccCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 155 PLFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+|++|++... .++.+||+||...++. .|.+|.+.+-....+.... .-.+.+++.++.+++.+..++
T Consensus 616 ~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~-di~~~v~~ll~~~~L~~~~~~ 694 (885)
T KOG0059|consen 616 KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRS-DIGSAIEKLLRLVGLGPYANK 694 (885)
T ss_pred cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChh-HHHHHHHHHHHHcCChhhhcc
Confidence 9999997531 3567999999987764 6999998754322111001 113457888999999887776
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
+ .+.+|||+|+|+++|.|++.+|++++|||||+|+||..++.+++.+++ .++.+|++||.++...
T Consensus 695 ~---------~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 695 Q---------VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred c---------hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 4 679999999999999999999999999999999999999999988764 3559999999998764
No 372
>KOG0927|consensus
Probab=99.87 E-value=1.6e-22 Score=194.17 Aligned_cols=177 Identities=19% Similarity=0.170 Sum_probs=145.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..+.+.||+|.|+++.. ++++++|.|..++++++| ||| || |+++ + .|..
T Consensus 388 pvi~~~nv~F~y~~~~~--------iy~~l~fgid~~srvAlV--------GPNG~GKsTLlKl-------~----~gdl 440 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPM--------IYKKLNFGIDLDSRVALV--------GPNGAGKSTLLKL-------I----TGDL 440 (614)
T ss_pred CeEEEeccccCCCCcch--------hhhhhhcccCcccceeEe--------cCCCCchhhhHHH-------H----hhcc
Confidence 46899999999975543 899999999999999999 999 99 8899 7 8888
Q ss_pred ccCCceeeccCCCcEEEEcCcCC---CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPY---MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVAD 230 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~ 230 (298)
.|..|.+......++++.-|+.. ....+..+++.-... .....+++..++..+|+... ...
T Consensus 441 ~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~------~~~~~e~~r~ilgrfgLtgd~q~~--------- 505 (614)
T KOG0927|consen 441 QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFP------DEKELEEMRSILGRFGLTGDAQVV--------- 505 (614)
T ss_pred ccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcc------ccchHHHHHHHHHHhCCCcccccc---------
Confidence 99999998766667777777652 234466666542211 12346778899999999742 222
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhc
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~ 297 (298)
...+||+|||.||.+||+++..|.+|+|||||++||.++...+.+.+.+..-++|+|||+.-++.+.
T Consensus 506 p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 506 PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV 572 (614)
T ss_pred chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHH
Confidence 3679999999999999999999999999999999999999999999999888999999999888763
No 373
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.6e-22 Score=179.25 Aligned_cols=158 Identities=22% Similarity=0.209 Sum_probs=115.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec----cCC------CcE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK----PPR------GKL 169 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~----~~r------~~i 169 (298)
+++|+||+|++|++++++ |+| || ++|+ | .|+..|++|++.. |.+ +++
T Consensus 39 AVqdisf~IP~G~ivgfl--------GaNGAGKSTtLKm-------L----TGll~p~~G~v~V~G~~Pf~~~~~~~~~~ 99 (325)
T COG4586 39 AVQDISFEIPKGEIVGFL--------GANGAGKSTTLKM-------L----TGLLLPTSGKVRVNGKDPFRRREEYLRSI 99 (325)
T ss_pred hhheeeeecCCCcEEEEE--------cCCCCcchhhHHH-------H----hCccccCCCeEEecCcCcchhHHHHHHHH
Confidence 899999999999999999 999 99 9999 8 9999999999863 222 235
Q ss_pred EEEc-CcCCCC-CCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400 170 FYVP-QRPYMT-LGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV 243 (298)
Q Consensus 170 ~~v~-Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl 243 (298)
++|+ |..-+. ...+.|-+.... .+ ..+. .++.....+.++++.+++.| ...||-|||.|+
T Consensus 100 ~~v~gqk~ql~Wdlp~~ds~~v~~----~I-y~Ipd~~F~~r~~~l~eiLdl~~~lk~~---------vr~LSlGqRmra 165 (325)
T COG4586 100 GLVMGQKLQLWWDLPALDSLEVLK----LI-YEIPDDEFAERLDFLTEILDLEGFLKWP---------VRKLSLGQRMRA 165 (325)
T ss_pred HHHhhhhheeeeechhhhhHHHHH----HH-HhCCHHHHHHHHHHHHHHhcchhhhhhh---------hhhccchHHHHH
Confidence 5443 222111 111111111000 00 1122 24455566666776666543 679999999999
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.||.||+|+|++|+|||||-|||..++..+.+.+++ .++||+..||+++-+
T Consensus 166 eLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di 220 (325)
T COG4586 166 ELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI 220 (325)
T ss_pred HHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhH
Confidence 999999999999999999999999999988888765 589999999998744
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.86 E-value=1.1e-21 Score=178.18 Aligned_cols=84 Identities=31% Similarity=0.402 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC---CCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 204 ADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR---PQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 204 ~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~---P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
.+..++++.++|.++ +++ ...+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.+++
T Consensus 147 ~~~~~~L~~vgL~~l~l~~---------~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~ 217 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQ---------PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217 (261)
T ss_pred HHHHHHHHHcCCchhhhcC---------ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 345667778888653 333 3679999999999999999996 799999999999999999988887764
Q ss_pred ---cCcEEEEEecCcchhhh
Q psy11400 280 ---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 280 ---~~~TiIiitH~l~~~~~ 296 (298)
.|.|+|+|||+++.+..
T Consensus 218 l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 218 LVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred HHhCCCEEEEEeCCHHHHHh
Confidence 48999999999987654
No 375
>KOG0066|consensus
Probab=99.85 E-value=1.8e-21 Score=183.10 Aligned_cols=174 Identities=24% Similarity=0.233 Sum_probs=143.3
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..+-+.||+|.||...+ ++++++|.|.-...++|| ||| || |+++ | .|-+
T Consensus 585 PvLGlH~VtFgy~gqkp--------LFkkldFGiDmdSRiaIV--------GPNGVGKSTlLkL-------L----~Gkl 637 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKP--------LFKKLDFGIDMDSRIAIV--------GPNGVGKSTLLKL-------L----IGKL 637 (807)
T ss_pred CeeecccccccCCCCCc--------hhhcccccccccceeEEE--------CCCCccHHHHHHH-------H----hcCC
Confidence 46789999999986555 899999999999999999 999 99 8888 6 7777
Q ss_pred ccCCceeeccCCCcEEEEcCcCC--C-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPY--M-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~ 231 (298)
.|..|+.....|-+||+.-|+.. + ...|-.|.+.-. .....++.+..|-.+||......- .
T Consensus 638 ~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~--------FNlpyq~ARK~LG~fGL~sHAHTi--------k 701 (807)
T KOG0066|consen 638 DPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK--------FNLPYQEARKQLGTFGLASHAHTI--------K 701 (807)
T ss_pred CCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh--------cCCChHHHHHHhhhhhhhhccceE--------e
Confidence 89999998887888999999863 2 123666655432 134456677888888885433221 2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
...||||||-||++|-.-+..|++|||||||++||.++...+-+.+.+.+-.||+|||+..++.
T Consensus 702 ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 702 IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIV 765 (807)
T ss_pred eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceee
Confidence 5689999999999999999999999999999999999999999999998889999999987764
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.9e-20 Score=170.75 Aligned_cols=228 Identities=15% Similarity=0.119 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeee
Q psy11400 7 YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGI 86 (298)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 86 (298)
-.++.-.+..+..|+.+++.....+.++..+..+|.++-......+ + +.. ...+.-..++++||
T Consensus 265 a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~---~------------~~~-q~~p~~~~lelrnv 328 (546)
T COG4615 265 AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD---F------------PRP-QAFPDWKTLELRNV 328 (546)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc---C------------CCC-CcCCcccceeeeee
Confidence 3445566677888999999999999999999999987654211100 0 000 01111246999999
Q ss_pred eEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400 87 TLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT 162 (298)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~ 162 (298)
.|+|+.... -+..||++|++||.+-|+ |.| || +.++ + .|++.|++|+|.
T Consensus 329 rfay~~~~F--------hvgPiNl~ikrGelvFli--------G~NGsGKST~~~L-------L----tGL~~PqsG~I~ 381 (546)
T COG4615 329 RFAYQDNAF--------HVGPINLTIKRGELVFLI--------GGNGSGKSTLAML-------L----TGLYQPQSGEIL 381 (546)
T ss_pred eeccCcccc--------eecceeeEEecCcEEEEE--------CCCCCcHHHHHHH-------H----hcccCCCCCcee
Confidence 999986554 578899999999999999 999 99 8888 7 999999999986
Q ss_pred ccC-----------CCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400 163 KPP-----------RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231 (298)
Q Consensus 163 ~~~-----------r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~ 231 (298)
.+. |+-++-||-|-++|. .+.-+. ...+.+.+...++.+.+.+.....+|-- -
T Consensus 382 ldg~pV~~e~ledYR~LfSavFsDyhLF~-----~ll~~e-------~~as~q~i~~~LqrLel~~ktsl~d~~f----s 445 (546)
T COG4615 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFD-----QLLGPE-------GKASPQLIEKWLQRLELAHKTSLNDGRF----S 445 (546)
T ss_pred ECCccCCCCCHHHHHHHHHHHhhhHhhhH-----hhhCCc-------cCCChHHHHHHHHHHHHhhhhcccCCcc----c
Confidence 321 233444454444432 121111 1256678888899888876543322100 1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH----HHHhcCcEEEEEecCcch
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSHRKSL 293 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~----~l~~~~~TiIiitH~l~~ 293 (298)
.-.||-|||+|+++.-|++-+-+|++|||=.+--||.-++.++. .+++.|+||+.||||-..
T Consensus 446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 34799999999999999999999999999999999999988875 467789999999998653
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.1e-20 Score=180.01 Aligned_cols=165 Identities=22% Similarity=0.301 Sum_probs=125.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------------CCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------------PRG 167 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------------~r~ 167 (298)
.++|+||++++||+++|. |-- |+ +++. + .|+-++.+|+|... .+.
T Consensus 274 ~~~dvSf~vr~GEIlGia--------GLvGaGRTEl~~~-------l----fG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 274 KVRDVSFTVRAGEILGIA--------GLVGAGRTELARA-------L----FGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred ceeCceeEEeCCcEEEEe--------ccccCCHHHHHHH-------H----hCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 489999999999999999 988 88 8888 7 88888889998632 134
Q ss_pred cEEEEcCcCC----CCCCCHHHHHccCCcchh----hhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400 168 KLFYVPQRPY----MTLGTLRDQVIYPHTKED----MIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE 239 (298)
Q Consensus 168 ~i~~v~Q~~~----l~~~tv~eni~~~~~~~~----~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq 239 (298)
.|+|||.|-- +...+|++|+.++..... ........+.+.++.+.+++... .......+||||.
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~--------s~~~~v~~LSGGN 406 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP--------SPEQPIGTLSGGN 406 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccC--------CccchhhcCCchh
Confidence 6999998753 346799999988721110 11111123345566666666321 1112467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
||||.|||.|..+|++|||||||-|+|.-++.+|++++++ .|++||+||-++..+-
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll 465 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELL 465 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 9999999999999999999999999999999999998775 5999999999887543
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=4.8e-20 Score=165.30 Aligned_cols=66 Identities=27% Similarity=0.413 Sum_probs=57.9
Q ss_pred cCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
.+..||||||||++|||||+. +|+++||||||++||+...+.+.+.+++. +.|+|+++|+.+....
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~ 226 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV 226 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 567999999999999999973 58999999999999999999999888763 7889999999876544
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=1.7e-20 Score=169.53 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=110.8
Q ss_pred CcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC-Cceeec--------------cCCCcEEEEcCc
Q psy11400 115 ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF-GGTVTK--------------PPRGKLFYVPQR 175 (298)
Q Consensus 115 g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~-~G~i~~--------------~~r~~i~~v~Q~ 175 (298)
..+++|+ ||| || |+++ + .++..+. .|++.. ....++++++|+
T Consensus 25 ~~~~~Iv--------G~NGsGKStll~A-------i----~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~ 85 (251)
T cd03273 25 PQFNAIT--------GLNGSGKSNILDA-------I----CFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDN 85 (251)
T ss_pred CCeEEEE--------CCCCCCHHHHHHH-------H----HHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEc
Confidence 5689999 999 99 8887 5 4444433 222210 112379999998
Q ss_pred CCC----------CCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCc--hhh--------hh-cCCcccccccCC
Q psy11400 176 PYM----------TLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLG--YIL--------NR-EKGWDTVADWID 233 (298)
Q Consensus 176 ~~l----------~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~--~~~--------~~-~~g~d~~~~~~~ 233 (298)
+.. +..|+.+++..+....... ......+++.++++.+++. ... .. ....+.....+.
T Consensus 86 ~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~ 165 (251)
T cd03273 86 SDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLT 165 (251)
T ss_pred CCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccccc
Confidence 631 1347777776543211101 1223457888999999985 100 00 000011123577
Q ss_pred CCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
+||+|||||++|||||+ .+|++++|||||++||+.....+.+.+++ .|.|+|+|||+.+....
T Consensus 166 ~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN 234 (251)
T ss_pred ccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 99999999999999998 57899999999999999999999998876 48899999999876654
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.82 E-value=2.7e-20 Score=164.34 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=106.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEe-CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc-cc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVR-GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD-QL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~-~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~-~l 153 (298)
.|+++|+. .|... .+++|+.. +|++++|+ |+| || |+++ + . .+
T Consensus 5 ~i~l~nf~-~y~~~------------~~i~~~~~~~~~~~~i~--------G~NGsGKSTll~~-------i----~~~l 52 (213)
T cd03279 5 KLELKNFG-PFREE------------QVIDFTGLDNNGLFLIC--------GPTGAGKSTILDA-------I----TYAL 52 (213)
T ss_pred EEEEECCc-CcCCc------------eEEeCCCCCccCEEEEE--------CCCCCCHHHHHHH-------h----eeeE
Confidence 47888877 55321 34667644 58999999 999 99 8887 4 2 22
Q ss_pred cccCCceee----------ccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHH--HHHcCCchhhhh
Q psy11400 154 WPLFGGTVT----------KPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEY--LQKVQLGYILNR 221 (298)
Q Consensus 154 ~~~~~G~i~----------~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~--l~~~~l~~~~~~ 221 (298)
+-+..+... ......|++++|++.... .+..++ ..+.+...+. ++..++.+++++
T Consensus 53 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~----~~~r~~---------gl~~~~~~~~~~l~~g~l~~~l~~ 119 (213)
T cd03279 53 YGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY----RVERSR---------GLDYDQFTRIVLLPQGEFDRFLAR 119 (213)
T ss_pred ecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE----EEEEec---------CCCHHHHHHhhhhhhcchHHHhcC
Confidence 222222111 112346899999873111 111111 2222333222 233334444433
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhc----------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEe
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYH----------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVS 288 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~----------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiit 288 (298)
.+.+||+|||||++|||||+. +|+++||||||++||+.....+.+.+++ .+.|+|+||
T Consensus 120 ---------~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~it 190 (213)
T cd03279 120 ---------PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVIS 190 (213)
T ss_pred ---------CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 367999999999999999985 5789999999999999999888877654 378999999
Q ss_pred cCcchhhh
Q psy11400 289 HRKSLWTH 296 (298)
Q Consensus 289 H~l~~~~~ 296 (298)
|+++.+..
T Consensus 191 H~~~~~~~ 198 (213)
T cd03279 191 HVEELKER 198 (213)
T ss_pred CchHHHHh
Confidence 99987654
No 381
>KOG0062|consensus
Probab=99.80 E-value=9e-20 Score=174.55 Aligned_cols=175 Identities=20% Similarity=0.183 Sum_probs=142.6
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..+++.+|+|.|..+... .+.++++.++.-..++++ |+| || ++++ + .+-.
T Consensus 361 p~l~i~~V~f~y~p~~y~-------~~~~~~~d~e~~sRi~~v--------g~ng~gkst~lKi-------~----~~~l 414 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQ-------WRKQLGLDRESDSRISRV--------GENGDGKSTLLKI-------L----KGDL 414 (582)
T ss_pred CeeEEEeeeccCCCcchh-------hhhccCCccchhhhhhee--------ccCchhHHHHHHH-------H----hccC
Confidence 468999999999666533 799999999999999999 999 99 6687 6 6655
Q ss_pred ccCCceeeccCCCcEEEEcCcCCCC-CCC--HHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYMT-LGT--LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVAD 230 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l~-~~t--v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~ 230 (298)
.|..|.+....|.+|+|-+|.-.-+ ... ..|... ...++..++++++.|..+|++. +...+
T Consensus 415 ~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~-------~~~pG~~~ee~r~hl~~~Gl~g~la~~s-------- 479 (582)
T KOG0062|consen 415 TPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFME-------KSFPGKTEEEIRRHLGSFGLSGELALQS-------- 479 (582)
T ss_pred CcccceeeecccceecchhHhhhhHHHHHhHHHHHHH-------HhCCCCCHHHHHHHHHhcCCCchhhhcc--------
Confidence 6788888888889999999976322 111 112111 1123457889999999999974 33332
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
...||||||-||+||.+...+|.+|+|||||+.||.++...+.+.++..+-.||+|||+.+++.
T Consensus 480 -i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 480 -IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred -ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 4689999999999999999999999999999999999999999999998889999999998775
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.79 E-value=3.1e-19 Score=156.70 Aligned_cols=144 Identities=20% Similarity=0.135 Sum_probs=102.8
Q ss_pred eeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee--------ccCCCcEEEEcCc
Q psy11400 108 YMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT--------KPPRGKLFYVPQR 175 (298)
Q Consensus 108 isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~--------~~~r~~i~~v~Q~ 175 (298)
.++++.+| +++|+ ||| || |+.. +.-...|..++..|.+. ...+..|++++|+
T Consensus 16 ~~l~~~~g-~~~i~--------G~NGsGKTTLl~a-------i~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~ 79 (204)
T cd03240 16 SEIEFFSP-LTLIV--------GQNGAGKTTIIEA-------LKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFEN 79 (204)
T ss_pred eEEecCCC-eEEEE--------CCCCCCHHHHHHH-------HHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEe
Confidence 34555667 99999 999 99 7777 42122466666666431 1224579999999
Q ss_pred CC-----CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHH------H
Q psy11400 176 PY-----MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR------V 243 (298)
Q Consensus 176 ~~-----l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR------l 243 (298)
+. +. ..|+.+|+.+.. .+++.+.+ ++ .+.+||+||+|| +
T Consensus 80 ~~~~~~~v~r~~~~~~~~~~~~-----------~~~~~~~~---------~~---------~~~~LS~G~~~~~~la~rl 130 (204)
T cd03240 80 ANGKKYTITRSLAILENVIFCH-----------QGESNWPL---------LD---------MRGRCSGGEKVLASLIIRL 130 (204)
T ss_pred CCCCEEEEEEEhhHhhceeeec-----------hHHHHHHH---------hc---------CccccCccHHHHHHHHHHH
Confidence 82 11 137888886531 12222222 22 267899999996 7
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHH-HHHHHHHhc----CcEEEEEecCcchhhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEG-SMYEYCREV----GITLFTVSHRKSLWTH 296 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~-~i~~~l~~~----~~TiIiitH~l~~~~~ 296 (298)
++|||++.+|++++|||||++||+.... .+.+++++. +.|+|++||+++.+..
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 8999999999999999999999999888 888877642 6799999999887653
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=8.2e-19 Score=166.05 Aligned_cols=157 Identities=24% Similarity=0.222 Sum_probs=119.0
Q ss_pred ceeeeeEEE-----eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcC
Q psy11400 104 SFFDYMFGV-----RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQ 174 (298)
Q Consensus 104 ~l~~isl~i-----~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q 174 (298)
.+.++.|++ ..||+++++ ||| || +.++ | +|..+|++|. ...-+|+|=||
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigil--------GpNgiGKTTFvk~-------L----AG~ikPdeg~---~~~~~vSyKPQ 408 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGIL--------GPNGIGKTTFVKL-------L----AGVIKPDEGS---EEDLKVSYKPQ 408 (591)
T ss_pred ecCceEEEecCCeeecceEEEEE--------CCCCcchHHHHHH-------H----hccccCCCCC---CccceEeecce
Confidence 445566655 456899999 999 99 8888 8 9999999998 33456999999
Q ss_pred cCC-CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC
Q psy11400 175 RPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP 253 (298)
Q Consensus 175 ~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P 253 (298)
... -+.+||.+.+.-..... ..+..--.++++-++|+++++++ ..+|||||.|||+||.||.++.
T Consensus 409 yI~~~~~gtV~~~l~~~~~~~-----~~~s~~~~ei~~pl~l~~i~e~~---------v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 409 YISPDYDGTVEDLLRSAIRSA-----FGSSYFKTEIVKPLNLEDLLERP---------VDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred eecCCCCCcHHHHHHHhhhhh-----cccchhHHhhcCccchHHHHhcc---------cccCCchhHHHHHHHHHhcccc
Confidence 764 36789998775432110 01111234567777888888775 6799999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400 254 QFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 254 ~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
++++||||++.||.+.+-.+ .+.+.+.++|.++|.||+-++-+
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 99999999999998755444 34444568999999999976643
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=2.6e-20 Score=164.47 Aligned_cols=170 Identities=19% Similarity=0.119 Sum_probs=108.7
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++++|.. .|. +.. ++++++| ++++|+ ||| || ++++ + ..+
T Consensus 6 l~l~nfk-~~~-~~~--------~l~~~~~-----~i~~iv--------GpNGaGKSTll~~-------i----~~~--- 48 (212)
T cd03274 6 LVLENFK-SYA-GEQ--------VIGPFHK-----SFSAIV--------GPNGSGKSNVIDS-------M----LFV--- 48 (212)
T ss_pred EEEECcc-cCC-CCe--------eeccCCC-----CeEEEE--------CCCCCCHHHHHHH-------H----HHH---
Confidence 6677764 553 333 7888887 899999 999 99 8888 5 211
Q ss_pred CCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hh-hcCCCH--HH----HHHHHHHcCCchhhhhcCCcc
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MI-QKGITD--AD----LTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~-~~~~~~--~~----i~~~l~~~~l~~~~~~~~g~d 226 (298)
.+..+....++++++++|+..+++ .+.+++..+...... .. ..+... .. ..++++.+++.+..+
T Consensus 49 ~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~------ 122 (212)
T cd03274 49 FGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW------ 122 (212)
T ss_pred hccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccc------
Confidence 111111112356899999876543 466665544321100 00 000000 00 022233333332222
Q ss_pred cccccCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
..+..||+|||||++||||++. +|++++|||||++||+.....+.+.+++. +.|+|++||+.+....
T Consensus 123 ---~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~ 195 (212)
T cd03274 123 ---KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFEL 195 (212)
T ss_pred ---cchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHh
Confidence 1356899999999999999974 57999999999999999999999988763 6799999999876554
No 385
>KOG0927|consensus
Probab=99.78 E-value=1.4e-18 Score=167.35 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=117.4
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
...++++|+++.|+ +.. +++|..|++++|+.++|+ |+| || ++++ + ++-
T Consensus 73 s~dvk~~sls~s~~-g~~--------l~kd~~~El~~g~rygLi--------G~nG~Gkst~L~~-------i----~~~ 124 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVE--------LIKDVTLELNRGRRYGLI--------GPNGSGKSTFLRA-------I----AGR 124 (614)
T ss_pred cccceeeeeeeccC-Cce--------eeeeeeEEecCCceEEEE--------cCCCCcHhHHHHH-------H----hcC
Confidence 34689999999996 333 899999999999999999 999 88 8887 5 444
Q ss_pred cccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcch--------hhhhcC---CC---HHHHHHHHHHcCCchhh
Q psy11400 154 WPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKE--------DMIQKG---IT---DADLTEYLQKVQLGYIL 219 (298)
Q Consensus 154 ~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~--------~~~~~~---~~---~~~i~~~l~~~~l~~~~ 219 (298)
..|..-+ -.+..+.++......+..+.+..+.... +..... .. -..+.+-+..++.+.+-
T Consensus 125 e~P~p~~------~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~ 198 (614)
T KOG0927|consen 125 EVPIPEH------IDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFE 198 (614)
T ss_pred CCCCCcc------cchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHH
Confidence 4442222 1223333332111223222222111000 000000 00 01122223333332211
Q ss_pred hh----c--CCcc-cc-cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCc-EEEEEecC
Q psy11400 220 NR----E--KGWD-TV-ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI-TLFTVSHR 290 (298)
Q Consensus 220 ~~----~--~g~d-~~-~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~-TiIiitH~ 290 (298)
.+ . .|+. .. ..|..+||||++.|+++||||+.+|++|+|||||++||.++..++-++|.+... ++++++|.
T Consensus 199 ~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~ 278 (614)
T KOG0927|consen 199 AKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHS 278 (614)
T ss_pred HHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecc
Confidence 11 0 1111 11 237889999999999999999999999999999999999999999999998877 89999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
.+++.
T Consensus 279 QDfln 283 (614)
T KOG0927|consen 279 QDFLN 283 (614)
T ss_pred hhhhh
Confidence 87654
No 386
>KOG0062|consensus
Probab=99.77 E-value=1.1e-18 Score=167.27 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=119.3
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..|..++++.+|. ++. +|.+-++++..|...+++ |+| || |+|+ | +.
T Consensus 79 ~Di~~~~fdLa~G-~k~--------LL~~a~L~L~~GrRYGLv--------GrNG~GKsTLLRa-------i----a~-- 128 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-GKI--------LLNKANLTLSRGRRYGLV--------GRNGIGKSTLLRA-------I----AN-- 128 (582)
T ss_pred cceeeeeeeeeec-chh--------hhcCCceeeeccccccee--------CCCCCcHHHHHHH-------H----Hh--
Confidence 4588899999995 444 899999999999999999 999 99 9998 6 22
Q ss_pred ccCCceeeccCCCcEEEEcCcC----------CCCCCCHHHHHccCCcchhhhhcCCCHHHHHH-HHHHcCCchhh-hhc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRP----------YMTLGTLRDQVIYPHTKEDMIQKGITDADLTE-YLQKVQLGYIL-NRE 222 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~----------~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~-~l~~~~l~~~~-~~~ 222 (298)
|+|.. .-++|+- .+-..+-+..+..-. ..+....+.+++.. +|..+|..+-+ .+|
T Consensus 129 ----~~v~~------f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e---~~l~~~~~l~ei~~~~L~glGFt~emq~~p 195 (582)
T KOG0062|consen 129 ----GQVSG------FHVEQEVRGDDTEALQSVLESDTERLDFLAEE---KELLAGLTLEEIYDKILAGLGFTPEMQLQP 195 (582)
T ss_pred ----cCcCc------cCchhheeccchHHHhhhhhccHHHHHHHHhh---hhhhccchHHHHHHHHHHhCCCCHHHHhcc
Confidence 33321 1122221 111222222222111 00011113445555 78888886543 333
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
..+||||-|-|+++||||..+||+|+|||||+.||.....++-+++.....|+|+||||-+...
T Consensus 196 ---------t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 196 ---------TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN 259 (582)
T ss_pred ---------ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence 6799999999999999999999999999999999999999999999998999999999987654
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.75 E-value=8.5e-18 Score=182.55 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=78.1
Q ss_pred CCHHHHHccCCcchhhhhc--CCCHHHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHh---cCCC
Q psy11400 181 GTLRDQVIYPHTKEDMIQK--GITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFY---HRPQ 254 (298)
Q Consensus 181 ~tv~eni~~~~~~~~~~~~--~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~---~~P~ 254 (298)
.||.|++.+.......... ....+.+ ++++.+++.++ ++++ +.+||||||||++|||||+ .+|+
T Consensus 763 ~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~---------~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 763 KNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP---------LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred CCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc---------cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 3778887765321100000 0012233 46777788665 4443 6799999999999999998 6999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 255 FAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 255 iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
++||||||++||+...+.+.+++++ .|.|||+|||+++.++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~ 877 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKV 877 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 9999999999999999988887754 48999999999988754
No 388
>KOG0065|consensus
Probab=99.75 E-value=8.5e-19 Score=182.92 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=129.3
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccc-ccccccccccCCceeecc--------CCCcE
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTL-GTLRDQLWPLFGGTVTKP--------PRGKL 169 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l-~~~~~~l~~~~~G~i~~~--------~r~~i 169 (298)
.+|+||+=-++||..+|++ |+| || |+++ | +...+|. .+|+|... -++.+
T Consensus 805 qLL~~V~G~~kPG~LTALM--------G~SGAGKTTLLdv-------LA~R~t~G~---I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALM--------GESGAGKTTLLDV-------LAGRKTGGY---IEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred EhhhcCceEecCCceeehh--------cCCCCchHHHHHH-------HhcCcccce---EEeEEEECCeeCchhhhcccc
Confidence 4999999999999999999 999 99 8888 5 1111232 34555321 25679
Q ss_pred EEEcCcCC-CCCCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCchhhhhcCCcccccc-cCCCCChhHHHHH
Q psy11400 170 FYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLGYILNREKGWDTVAD-WIDVLSGGEKQRV 243 (298)
Q Consensus 170 ~~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~d~~~~-~~~~LSgGqkQRl 243 (298)
|||-|+.. +...||+|-+.|....+.. ...+ .+.++++++.++|+++.+.. ++ .+.-||..||+|+
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp--~~v~~~ek~~yVe~Vi~lleL~~~~dai------VG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLP--KEVSDEEKYEYVEEVIELLELKEYADAL------VGLPGSGLSTEQRKRL 938 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCC--CcCCHHHHHHHHHHHHHHhCchhhhhhh------ccCCCCCCCHHHhcee
Confidence 99999874 6678999999886422110 1111 25588999999998877553 33 4577999999999
Q ss_pred HHHHHHhcCC-CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 244 AMARLFYHRP-QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 244 aiARaL~~~P-~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
.||--|+.+| .||+|||||||||.++...+.+.+++ .|.||+++-|++|..
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ 993 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSID 993 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHH
Confidence 9999999999 89999999999999999888888775 599999999999853
No 389
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=1.9e-17 Score=172.73 Aligned_cols=66 Identities=29% Similarity=0.368 Sum_probs=59.9
Q ss_pred cCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
...+||||||||++|||+|+.+| +++||||||++||+.....+.+.+++ .|.|||+|+|+++.+..
T Consensus 827 ~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~ 898 (943)
T PRK00349 827 PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKT 898 (943)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 46799999999999999999999 99999999999999999988887664 48999999999988754
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=1.1e-17 Score=146.33 Aligned_cols=151 Identities=14% Similarity=0.069 Sum_probs=97.8
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc-CCce----eec--cCCCcEEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL-FGGT----VTK--PPRGKLFYV 172 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~-~~G~----i~~--~~r~~i~~v 172 (298)
.++++++++.+| +.+|+ ||| || |+.. +.....+-... ..|. +.. .....|.+.
T Consensus 11 ~~~~~~l~f~~g-l~~i~--------G~NGsGKStll~a-------i~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~ 74 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIV--------GNNGSGKSAILTA-------LTIGLGGKASDTNRGSSLKDLIKDGESSAKITVT 74 (198)
T ss_pred ceeeeEEecCCC-eEEEE--------CCCCCcHHHHHHH-------HHHHhcCCcccccccccHHHHhhCCCCeEEEEEE
Confidence 456777888776 77899 999 99 6665 31111111100 1121 000 113357788
Q ss_pred cCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHH---
Q psy11400 173 PQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLF--- 249 (298)
Q Consensus 173 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL--- 249 (298)
+|+..++. | +. .....+.+.++++. .+..++ .+.+||+|||||++||+|+
T Consensus 75 ~~~~~~~~-----~---~~-------~~~~~~~~~~~l~~---~~~~~~---------~~~~lS~G~k~r~~ia~al~~~ 127 (198)
T cd03276 75 LKNQGLDA-----N---PL-------CVLSQDMARSFLTS---NKAAVR---------DVKTLSGGERSFSTVCLLLSLW 127 (198)
T ss_pred EEcCCccC-----C---cC-------CHHHHHHHHHHhcc---ccccCC---------cccccChhHHHHHHHHHHHHHh
Confidence 88764433 1 11 11123455566654 222222 3679999999999999999
Q ss_pred -hcCCCEEEEeccccCCCHHHHHHHHHHHHhc------CcEEEEEecCcchhhhc
Q psy11400 250 -YHRPQFAILDECTSAVSVDVEGSMYEYCREV------GITLFTVSHRKSLWTHH 297 (298)
Q Consensus 250 -~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~------~~TiIiitH~l~~~~~~ 297 (298)
+.+|+++||||||++||......+.+.+++. +.|+|++||+++.+..+
T Consensus 128 ~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 128 EVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred cccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence 5899999999999999999888888766541 35899999999877654
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=3.5e-18 Score=148.02 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=129.9
Q ss_pred EEeeeeEe--cCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 82 GRLGITLG--LRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 82 ~~~~v~~~--~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.+.|+++- .+++..+ +++++|+++++||+-++| |.| || +.+. ++.+...-|.
T Consensus 5 DIrnL~IE~~TsqG~vK-------~VD~v~ltlnEGEi~GLV--------GESGSGKSLiAK~-------Ic~v~kdnW~ 62 (330)
T COG4170 5 DIRNLTIEFKTSQGWVK-------AVDRVSMTLNEGEIRGLV--------GESGSGKSLIAKA-------ICGVNKDNWR 62 (330)
T ss_pred cccceEEEEecCCCceE-------eeeeeeeeeccceeeeee--------ccCCCchhHHHHH-------HhcccccceE
Confidence 44555543 3445443 999999999999999999 999 99 6666 5222223333
Q ss_pred cCCce-----ee---cc-------CCCcEEEEcCcCC--C-CCCCHHHHHcc--CC-cchh--hhhcCCCHHHHHHHHHH
Q psy11400 156 LFGGT-----VT---KP-------PRGKLFYVPQRPY--M-TLGTLRDQVIY--PH-TKED--MIQKGITDADLTEYLQK 212 (298)
Q Consensus 156 ~~~G~-----i~---~~-------~r~~i~~v~Q~~~--l-~~~tv~eni~~--~~-~~~~--~~~~~~~~~~i~~~l~~ 212 (298)
.+... |. .. ..+.|+++||+|. + ++.++-.++.- |. .... .........++.+++..
T Consensus 63 vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHr 142 (330)
T COG4170 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHR 142 (330)
T ss_pred EEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHH
Confidence 33222 11 01 1245899999995 3 23455544432 21 1111 11223456678899999
Q ss_pred cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS 288 (298)
Q Consensus 213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit 288 (298)
+|+.+..+- ...++.+|.-||-|+|.||.|++.+|++||.||||+++++.+..++++++.. .|.||++++
T Consensus 143 VGIKdHkDI------M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s 216 (330)
T COG4170 143 VGIKDHKDI------MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS 216 (330)
T ss_pred hccccHHHH------HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEc
Confidence 999764332 2235789999999999999999999999999999999999999999998764 489999999
Q ss_pred cCcchhh
Q psy11400 289 HRKSLWT 295 (298)
Q Consensus 289 H~l~~~~ 295 (298)
||+..+.
T Consensus 217 ~Dl~~is 223 (330)
T COG4170 217 HDLQMIS 223 (330)
T ss_pred ccHHHHH
Confidence 9997654
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=6.5e-18 Score=152.41 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHcCCchhhhh---cCCc-cccc---------ccCCCCChhHHHHHHHHHHHhcC----CCEEEEecccc
Q psy11400 201 ITDADLTEYLQKVQLGYILNR---EKGW-DTVA---------DWIDVLSGGEKQRVAMARLFYHR----PQFAILDECTS 263 (298)
Q Consensus 201 ~~~~~i~~~l~~~~l~~~~~~---~~g~-d~~~---------~~~~~LSgGqkQRlaiARaL~~~----P~iliLDEPTs 263 (298)
.+..++.+.++.+++...... ++|- +... ..+.+||+|||||++||||++.+ |+++||||||+
T Consensus 109 ~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~ 188 (247)
T cd03275 109 VSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDA 188 (247)
T ss_pred ecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccc
Confidence 455677888899988532110 1110 1111 12478999999999999999864 89999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CcEEEEEecCcchhhhc
Q psy11400 264 AVSVDVEGSMYEYCREV---GITLFTVSHRKSLWTHH 297 (298)
Q Consensus 264 ~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~~~~ 297 (298)
+||+.....+.+.+++. |.|+|+|||+.+.+...
T Consensus 189 ~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~ 225 (247)
T cd03275 189 ALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKA 225 (247)
T ss_pred cCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhC
Confidence 99999999888877653 78999999998876643
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=2.7e-17 Score=157.35 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=136.5
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+..++++|++..-..+.. .++++||+|++||+++|. |-+ |. |+.+ | .|+
T Consensus 255 ~~vL~V~~L~v~~~~~~~--------~v~~vs~~Vr~GEIvGIA--------GV~GNGQ~eL~ea-------i----sGl 307 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVT--------AVKDVSFEVRAGEIVGIA--------GVAGNGQSELVEA-------I----SGL 307 (501)
T ss_pred CeEEEEeeeEeecCCCCc--------eeeeeeeEEecCcEEEEE--------ecCCCCHHHHHHH-------H----hCC
Confidence 346899999987654433 899999999999999999 999 66 9888 8 999
Q ss_pred cccCCceeeccC-------------CCcEEEEcCcCC----CCCCCHHHHHccCCcchh-hhhcC-CCHH----HHHHHH
Q psy11400 154 WPLFGGTVTKPP-------------RGKLFYVPQRPY----MTLGTLRDQVIYPHTKED-MIQKG-ITDA----DLTEYL 210 (298)
Q Consensus 154 ~~~~~G~i~~~~-------------r~~i~~v~Q~~~----l~~~tv~eni~~~~~~~~-~~~~~-~~~~----~i~~~l 210 (298)
.++.+|+|.... +..++|||.|.. ....|+.||+.+...... ..... .+.. ...+.+
T Consensus 308 r~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li 387 (501)
T COG3845 308 RKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELI 387 (501)
T ss_pred CccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHH
Confidence 988889985321 246999999873 457799999986542110 00111 2222 334555
Q ss_pred HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEE
Q psy11400 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTV 287 (298)
Q Consensus 211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIii 287 (298)
+.+++.. .+ ......+||||.+||+-+||-|..+|++||+.+||-|||....+.+.+.+.+ .|+.|++|
T Consensus 388 ~~fdVr~-----~~---~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 388 EEFDVRA-----PS---PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred HHcCccC-----CC---CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5555431 01 1113568999999999999999999999999999999999998888876543 59999999
Q ss_pred ecCcchhh
Q psy11400 288 SHRKSLWT 295 (298)
Q Consensus 288 tH~l~~~~ 295 (298)
|-+++.+.
T Consensus 460 S~dLDEil 467 (501)
T COG3845 460 SEDLDEIL 467 (501)
T ss_pred ehhHHHHH
Confidence 99998653
No 394
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.70 E-value=3.9e-18 Score=143.87 Aligned_cols=168 Identities=20% Similarity=0.179 Sum_probs=125.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++||+... -|-.+|.++..||++-++ ||| || |+-. + +|+.
T Consensus 3 l~qln~v~~~t-------------RL~plS~qv~aGe~~Hli--------GPNGaGKSTLLA~-------l----AGm~- 49 (248)
T COG4138 3 LMQLNDVAEST-------------RLGPLSGEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGMT- 49 (248)
T ss_pred eeeeccccccc-------------cccccccccccceEEEEE--------CCCCccHHHHHHH-------H----hCCC-
Confidence 46778877654 245589999999999999 999 99 5444 4 8875
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCC-CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
|.+|+|... ..++-+|+.|+.. .|.+.|+..+.+.... ......+.+++..+++++.+.|.
T Consensus 50 ~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~------~~~a~~i~~i~~~L~l~DKL~Rs- 122 (248)
T COG4138 50 SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD------KTRTELLNDVAGALALDDKLGRS- 122 (248)
T ss_pred CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch------HHHHHHHHHHHhhhcccchhhhh-
Confidence 688888532 1345678888764 5667888877664321 11235678888888888766552
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhc-----CC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYH-----RP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~-----~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
.+.|||||-|||-+|-.+++ || ++|++|||.++||..-+..+.+++.+ .|.+||+++||++-
T Consensus 123 --------~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh 194 (248)
T COG4138 123 --------TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH 194 (248)
T ss_pred --------hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh
Confidence 57899999999999988874 34 69999999999999887777666544 59999999999985
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
.-
T Consensus 195 TL 196 (248)
T COG4138 195 TL 196 (248)
T ss_pred HH
Confidence 43
No 395
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=3.7e-16 Score=162.80 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=59.8
Q ss_pred cCCCCChhHHHHHHHHHHHhc---CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400 231 WIDVLSGGEKQRVAMARLFYH---RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~---~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~ 297 (298)
...+|||||+||++||++|+. +|+++||||||++||+.....+.+.+++ .|.|+|+|+|+++.++..
T Consensus 825 ~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~a 897 (924)
T TIGR00630 825 PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTA 897 (924)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 467999999999999999997 5999999999999999999988887764 489999999999987643
No 396
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.67 E-value=2.1e-16 Score=148.37 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=124.5
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcC--
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRP-- 176 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~-- 176 (298)
.+++|+||+|++|+.++|+ |+| || +++++++..... ....|.|++|.+..+...--+.+|-+-
T Consensus 397 yvlr~vNL~ikpGdvvaVv--------GqSGaGKttllRmi~G~~~~~---~ee~y~p~sg~v~vp~nt~~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVV--------GQSGAGKTTLLRMILGAQKGR---GEEKYRPDSGKVEVPKNTVSALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEE--------ecCCCCcchHHHHHHHHhhcc---cccccCCCCCceeccccchhhccCccccc
Confidence 5899999999999999999 999 99 888844432222 134678999999876555445666543
Q ss_pred CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400 177 YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256 (298)
Q Consensus 177 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il 256 (298)
.+-.-|+.|++.-- .-+.....++++.+|+.+-.-.. ...++||-|||.|+.||+++..+|.++
T Consensus 466 ~f~~~tilehl~s~---------tGD~~~AveILnraGlsDAvlyR-------r~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 466 EFGEVTILEHLRSK---------TGDLNAAVEILNRAGLSDAVLYR-------RKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccCchhHHHHHhhc---------cCchhHHHHHHHhhccchhhhhh-------ccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 23333777776421 11223456789999997633211 135799999999999999999999999
Q ss_pred EEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400 257 ILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 257 iLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+.||-.|.||+.+...+ .++.++.+.|++++|||.+..+.
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 99999999999876554 55666779999999999988764
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.65 E-value=1.3e-16 Score=151.25 Aligned_cols=146 Identities=23% Similarity=0.271 Sum_probs=105.1
Q ss_pred EeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------------------
Q psy11400 112 VRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----------------------- 164 (298)
Q Consensus 112 i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----------------------- 164 (298)
.++|++++|+ |+| || .+++ | +|-..|.=|+...+
T Consensus 97 pr~G~V~Gil--------G~NGiGKsTalkI-------L----aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 97 PRPGKVVGIL--------GPNGIGKSTALKI-------L----AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred CCCCcEEEEE--------cCCCccHHHHHHH-------H----hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 5789999999 999 99 7787 7 77776666653211
Q ss_pred -CCCcEEEEcCc----CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400 165 -PRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE 239 (298)
Q Consensus 165 -~r~~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq 239 (298)
..-++..=||- |-.+.|++.|-+.-.. .....+++.+.++|...+++. .++|||||
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d----------e~g~~devve~l~L~nvl~r~---------v~~LSGGE 218 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVD----------ERGKFDEVVERLGLENVLDRD---------VSELSGGE 218 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhh----------hcCcHHHHHHHhcchhhhhhh---------hhhcCchH
Confidence 01122333332 3345677777654211 112467778888998888774 67999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
-||+|||.|++++.+++++|||||-||...+-...+.+++ .+++||+|.||+...-
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD 277 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLD 277 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHH
Confidence 9999999999999999999999999998755444444333 2799999999998654
No 398
>KOG2355|consensus
Probab=99.56 E-value=3.3e-14 Score=122.98 Aligned_cols=168 Identities=19% Similarity=0.265 Sum_probs=112.0
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+..|++.++.|+|+...+ ++.|+|++++.|....+| |.| || |+++ + +|=
T Consensus 11 ~~aievsgl~f~y~~~dP--------~~~Dfnldlp~gsRcLlV--------GaNGaGKtTlLKi-------L----sGK 63 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDP--------IFFDFNLDLPAGSRCLLV--------GANGAGKTTLLKI-------L----SGK 63 (291)
T ss_pred cceEEEeccEEecccCCc--------eEEEEeeccCCCceEEEE--------ecCCCchhhhHHH-------h----cCc
Confidence 357999999999987665 999999999999999999 999 99 8888 5 442
Q ss_pred cccCCceeeccC-----------CCcEEEEcCc-----------CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400 154 WPLFGGTVTKPP-----------RGKLFYVPQR-----------PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211 (298)
Q Consensus 154 ~~~~~G~i~~~~-----------r~~i~~v~Q~-----------~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 211 (298)
--...|.|.... .....|+--+ |.--..++.+. .++.. ....++-+++++
T Consensus 64 hmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~m-ifgV~-------g~dp~Rre~LI~ 135 (291)
T KOG2355|consen 64 HMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHM-IFGVG-------GDDPERREKLID 135 (291)
T ss_pred ccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHH-Hhhcc-------CCChhHhhhhhh
Confidence 222223332110 1112222211 11111122221 12110 111122233333
Q ss_pred HcCCchhhhhcCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEE
Q psy11400 212 KVQLGYILNREKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFT 286 (298)
Q Consensus 212 ~~~l~~~~~~~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIi 286 (298)
.+.++ .. +.+.+|-|||+||.|+.-|++.=++|+|||-|--||...+..+++.+++ +|.||+.
T Consensus 136 iLDId------------l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVY 203 (291)
T KOG2355|consen 136 ILDID------------LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVY 203 (291)
T ss_pred heecc------------ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 33332 23 3478999999999999999999999999999999999999999988875 5999999
Q ss_pred EecCcc
Q psy11400 287 VSHRKS 292 (298)
Q Consensus 287 itH~l~ 292 (298)
.||-.+
T Consensus 204 ATHIFD 209 (291)
T KOG2355|consen 204 ATHIFD 209 (291)
T ss_pred Eeeecc
Confidence 999643
No 399
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.54 E-value=1.2e-14 Score=151.82 Aligned_cols=66 Identities=26% Similarity=0.301 Sum_probs=59.5
Q ss_pred cCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
...+|||||+|||+|||||..+| +++||||||++||+.....+.+.+++ .|.|||+|+|+++.+..
T Consensus 486 ~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 486 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 46899999999999999999997 99999999999999999888887654 58999999999987753
No 400
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=1.6e-14 Score=150.62 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=59.6
Q ss_pred cCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
...+|||||+|||.|||||..+| +++||||||+|||+.....+.+.+++ .|.|||+|+|+++.++.
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 47899999999999999999986 89999999999999999888887654 58999999999998764
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.52 E-value=4.1e-14 Score=123.70 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH-H---HHhcCcEEEEEecCcchhhhc
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE-Y---CREVGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~-~---l~~~~~TiIiitH~l~~~~~~ 297 (298)
.+++|+||||++.+++++ .+|+++++||||+++|+.....+.. . +++.+.|+|++||+.++..++
T Consensus 89 ~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~ 157 (200)
T cd03280 89 LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYA 157 (200)
T ss_pred cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHH
Confidence 568999999999999885 8999999999999999988776642 3 334589999999987665543
No 402
>KOG0066|consensus
Probab=99.51 E-value=2.5e-14 Score=135.34 Aligned_cols=172 Identities=22% Similarity=0.267 Sum_probs=114.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++|.+++-. +.. ++.|-||.|-.|...++| ||| || |++. +. .+-
T Consensus 264 DIKiEnF~ISA~-Gk~--------LFvnA~L~Iv~GRRYGLV--------GPNG~GKTTLLkH-------Ia---~Ra-- 314 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKL--------LFVNASLTIVYGRRYGLV--------GPNGMGKTTLLKH-------IA---ARA-- 314 (807)
T ss_pred cceeeeeeeecc-cce--------eeeccceEEEecceeccc--------CCCCCchHHHHHH-------HH---hhh--
Confidence 588999888763 444 789999999999999999 999 88 7776 41 110
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcc-----h------hhhhcC---------------------CCH
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTK-----E------DMIQKG---------------------ITD 203 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-----~------~~~~~~---------------------~~~ 203 (298)
...++.-.+-++-|+......|..+-++-.... + ..+..+ ...
T Consensus 315 -----laIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAE 389 (807)
T KOG0066|consen 315 -----LAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAE 389 (807)
T ss_pred -----ccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccch
Confidence 111222335666666544333333333211100 0 000000 012
Q ss_pred HHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCc
Q psy11400 204 ADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI 282 (298)
Q Consensus 204 ~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~ 282 (298)
.+.+++|.-+|.+.- .++ +...+|||-|-||++||||+..|-+|+|||||+.||....-++-.+++.+.+
T Consensus 390 arARRILAGLGFskEMQ~r---------Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK 460 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQER---------PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK 460 (807)
T ss_pred hHHHHHHhhcCCChhHhcC---------CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh
Confidence 233334444444321 122 3568999999999999999999999999999999999988889999998899
Q ss_pred EEEEEecCcchh
Q psy11400 283 TLFTVSHRKSLW 294 (298)
Q Consensus 283 TiIiitH~l~~~ 294 (298)
|+++|||+.++.
T Consensus 461 TLLIVSHDQgFL 472 (807)
T KOG0066|consen 461 TLLIVSHDQGFL 472 (807)
T ss_pred eeEEEecccchH
Confidence 999999998754
No 403
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=6.5e-14 Score=152.31 Aligned_cols=108 Identities=20% Similarity=0.149 Sum_probs=85.4
Q ss_pred CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh-hcCCcccccccCCCCChhHHH------HHHHHHHHh
Q psy11400 178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN-REKGWDTVADWIDVLSGGEKQ------RVAMARLFY 250 (298)
Q Consensus 178 l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~d~~~~~~~~LSgGqkQ------RlaiARaL~ 250 (298)
.|.||+++||.+ .. ..+++ ..+++..+...+.. .+.| ++..+....||||||| |++|||||+
T Consensus 1153 ~~~~~~~~~i~~-~~-------~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-------DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred HcCccHHHHhhc-CC-------CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHh
Confidence 478999999998 31 22333 46666677766554 4667 7777766799999999 999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHh--------cCcEEEEEecCcchhhh
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCRE--------VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~--------~~~TiIiitH~l~~~~~ 296 (298)
.+|++++|||||++||+.....+.+.+.. .|.|+|+|||++..+..
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 99999999999999999988877665432 27899999999987653
No 404
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.48 E-value=1.2e-13 Score=122.22 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=53.3
Q ss_pred cCCCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-C-cEEEEEecCcchh
Q psy11400 231 WIDVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-G-ITLFTVSHRKSLW 294 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~-~TiIiitH~l~~~ 294 (298)
.+.+||+|||||+.+|+++ +.+|+++|+||||++||+.....+.+.+.+ . + .|+|++||++...
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~ 195 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG 195 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC
Confidence 5679999999998877554 589999999999999999999988887654 2 4 4799999987543
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.47 E-value=7.4e-14 Score=118.13 Aligned_cols=63 Identities=27% Similarity=0.292 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
.||+||+||+++||+|.. +|+++++|||++++|+.....+.+.+.+ .+.++|++||+++....
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 599999999999999987 7899999999999999988777665543 26899999999987654
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.46 E-value=1.1e-13 Score=151.00 Aligned_cols=67 Identities=24% Similarity=0.300 Sum_probs=59.8
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 230 DWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 230 ~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
....+|||||+|||+|||||..+| +++||||||++||+...+.+.+.+++ .|.|||+|+||+++++.
T Consensus 472 R~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~ 543 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISL 543 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 356899999999999999999999 89999999999999999988877664 48999999999986654
No 407
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.43 E-value=4e-13 Score=115.59 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 235 LSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 235 LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
||+|||||++|||+++ .+|+++++||||++||+.....+.+.+++ .+.|+|++||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~ 163 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFEN 163 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 9999999999999996 69999999999999999999888887764 36899999999987654
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=7.1e-14 Score=124.33 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=87.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEE-EEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLF-YVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~-~v~Q~~~l 178 (298)
+.+|++++++++++++|+ ||| || +++. + + +.. .-.++| |||.+..
T Consensus 19 v~~~~~~~~~~~~~~~l~--------G~n~~GKstll~~-------i----~-~~~---------~la~~g~~vpa~~~- 68 (222)
T cd03285 19 IPNDVTLTRGKSRFLIIT--------GPNMGGKSTYIRQ-------I----G-VIV---------LMAQIGCFVPCDSA- 68 (222)
T ss_pred EEeeEEEeecCCeEEEEE--------CCCCCChHHHHHH-------H----H-HHH---------HHHHhCCCcCcccE-
Confidence 889999999999999999 999 99 7887 5 2 110 011233 4554421
Q ss_pred CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHH--hcCCCEE
Q psy11400 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLF--YHRPQFA 256 (298)
Q Consensus 179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL--~~~P~il 256 (298)
.++. +++++..+++.+.. ...+|.|++|++.+++++ +.+|+++
T Consensus 69 ---------~~~~--------------~~~il~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLv 113 (222)
T cd03285 69 ---------DIPI--------------VDCILARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLI 113 (222)
T ss_pred ---------EEec--------------cceeEeeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEE
Confidence 0100 11223333443221 247999999999999999 8999999
Q ss_pred EEecc---ccCCCHHHHHHHH-HHHHh-cCcEEEEEecCcchhh
Q psy11400 257 ILDEC---TSAVSVDVEGSMY-EYCRE-VGITLFTVSHRKSLWT 295 (298)
Q Consensus 257 iLDEP---Ts~LD~~~~~~i~-~~l~~-~~~TiIiitH~l~~~~ 295 (298)
||||| |+++|+....... +.+.+ .+.++|++||..++.+
T Consensus 114 LLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~ 157 (222)
T cd03285 114 IIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTA 157 (222)
T ss_pred EEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHH
Confidence 99999 9999997665433 55554 4899999999755443
No 409
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=1e-12 Score=120.48 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhc
Q psy11400 232 IDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHH 297 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~ 297 (298)
...|||||+||+++|++++. +|++++|||||++||+.....+.+.+++. +.|+|++||+++.....
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~ 239 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMA 239 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhc
Confidence 44699999999999997654 99999999999999999999999888753 78999999999876543
No 410
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.31 E-value=3.1e-12 Score=127.95 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=57.4
Q ss_pred CCCCChhHHHHHHHHHHHh----------cCCCEEEEeccc-cCCCHHHHHHHHHHHHh-cCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFY----------HRPQFAILDECT-SAVSVDVEGSMYEYCRE-VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~----------~~P~iliLDEPT-s~LD~~~~~~i~~~l~~-~~~TiIiitH~l~~~~~ 296 (298)
+..||||||||++||+||+ .+|+++|||||| ++||+.....+.+.+++ .+.|+|+|||+......
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK 542 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh
Confidence 3689999999999999987 599999999998 78999999999988877 47899999999876543
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.30 E-value=2.9e-12 Score=112.11 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHH----HHHHhcCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~----~~l~~~~~TiIiitH~l~~~~~ 296 (298)
.+.+|.+++| +..+.+++.+|+++||||||+++|+.....+. +.+.+.+.++|++||+.+....
T Consensus 89 ~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 89 RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADL 156 (202)
T ss_pred ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 4567777776 66667888999999999999999997665443 3344458999999999887654
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=3.7e-12 Score=111.94 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=85.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEE-EEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLF-YVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~-~v~Q~~~l 178 (298)
+.+|++|++++|+.++|+ ||| || +++. + +++.- ..++| +||-..
T Consensus 18 v~~~~~~~~~~~~~~~l~--------G~n~~GKstll~~-------i----~~~~~----------la~~G~~vpa~~-- 66 (204)
T cd03282 18 IPNDIYLTRGSSRFHIIT--------GPNMSGKSTYLKQ-------I----ALLAI----------MAQIGCFVPAEY-- 66 (204)
T ss_pred EEeeeEEeeCCCcEEEEE--------CCCCCCHHHHHHH-------H----HHHHH----------HHHcCCCcchhh--
Confidence 899999999999999999 999 99 7887 5 43310 01122 222111
Q ss_pred CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy11400 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258 (298)
Q Consensus 179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliL 258 (298)
...++.|+|.... +..+.. ....+++|+|++|+ ..+.+++.+|++++|
T Consensus 67 ~~l~~~d~I~~~~----------------------~~~d~~---------~~~~S~fs~e~~~~-~~il~~~~~~~lvll 114 (204)
T cd03282 67 ATLPIFNRLLSRL----------------------SNDDSM---------ERNLSTFASEMSET-AYILDYADGDSLVLI 114 (204)
T ss_pred cCccChhheeEec----------------------CCcccc---------chhhhHHHHHHHHH-HHHHHhcCCCcEEEe
Confidence 1123444443211 111101 11246799999975 555668899999999
Q ss_pred eccccCCCHHHHH----HHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 259 DECTSAVSVDVEG----SMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 259 DEPTs~LD~~~~~----~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
|||++|+|+.... .+.+.+.+.+.++|++||+.+.+..
T Consensus 115 DE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 115 DELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 9999999986422 3444555569999999999887653
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.29 E-value=3.4e-12 Score=111.72 Aligned_cols=128 Identities=12% Similarity=0.015 Sum_probs=81.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc-cCCceeeccCCCcEEEEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP-LFGGTVTKPPRGKLFYVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~-~~~G~i~~~~r~~i~~v~Q~~~l 178 (298)
+++|++|+. |++++|+ ||| || +++. + ++... ...|.-. +. . .+++|...+
T Consensus 16 v~n~i~l~~--g~~~~lt--------GpNg~GKSTllr~-------i----~~~~~l~~~G~~v-~a-~--~~~~q~~~l 70 (199)
T cd03283 16 VANDIDMEK--KNGILIT--------GSNMSGKSTFLRT-------I----GVNVILAQAGAPV-CA-S--SFELPPVKI 70 (199)
T ss_pred ecceEEEcC--CcEEEEE--------CCCCCChHHHHHH-------H----HHHHHHHHcCCEE-ec-C--ccCcccceE
Confidence 778887765 7999999 999 99 8888 6 44321 1233211 11 1 356674334
Q ss_pred C-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400 179 T-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI 257 (298)
Q Consensus 179 ~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~ili 257 (298)
| ..|+.||+..+.... .....++.++++.++ ..+|+++|
T Consensus 71 ~~~~~~~d~l~~~~s~~-----~~e~~~~~~iL~~~~-----------------------------------~~~p~lll 110 (199)
T cd03283 71 FTSIRVSDDLRDGISYF-----YAELRRLKEIVEKAK-----------------------------------KGEPVLFL 110 (199)
T ss_pred EEeccchhccccccChH-----HHHHHHHHHHHHhcc-----------------------------------CCCCeEEE
Confidence 3 568899887754210 001122333333321 07999999
Q ss_pred EeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400 258 LDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 258 LDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+||||+++|+.....+ .+.+.+.+.|+|++||+++.+..
T Consensus 111 lDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 111 LDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred EecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 9999999999866543 23334458999999999987764
No 414
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.23 E-value=1.5e-11 Score=123.39 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHHhcC----CCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLFYHR----PQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~----P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
..|||||+||++||++++.. |+++||||||+|||+.....+.+.+++ .+.|||+|||++..+..
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ 508 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAH 508 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence 46899999999999999985 699999999999999999988888775 38999999999987654
No 415
>PRK10869 recombination and repair protein; Provisional
Probab=99.22 E-value=2.3e-11 Score=121.61 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.+++ .+.+||+|||++..+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ 498 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC 498 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 479999999999999997 5899999999999999999999888876 36899999999987654
No 416
>KOG0063|consensus
Probab=99.19 E-value=4.1e-11 Score=113.41 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=113.1
Q ss_pred ceeeeeEEEeCCc-----EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce-eeccCCCcEEEEc
Q psy11400 104 SFFDYMFGVRGAL-----NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT-VTKPPRGKLFYVP 173 (298)
Q Consensus 104 ~l~~isl~i~~g~-----~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~-i~~~~r~~i~~v~ 173 (298)
.+-++.|.|+.|+ ++..+ |.| || ++++ + +|..+|++|. +. .-.++|=|
T Consensus 351 ~~g~F~L~i~~GefsdSeiivml--------gEngtgkTTfi~m-------l----ag~~~pd~~~e~p---~lnVSykp 408 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVML--------GENGTGKTTFIRM-------L----AGRLKPDEGGEIP---VLNVSYKP 408 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEE--------ccCCcchhHHHHH-------H----hcCCCCCccCccc---ccceeccc
Confidence 6788999999986 56777 999 99 8888 7 8887887764 42 22588999
Q ss_pred CcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400 174 QRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252 (298)
Q Consensus 174 Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~ 252 (298)
|...- +.+|+|.-+.--.. .......-+.++++-+.+++..++. ..+|||||+||+++|.+|-..
T Consensus 409 qkispK~~~tvR~ll~~kIr-----~ay~~pqF~~dvmkpL~ie~i~dqe---------vq~lSggelQRval~KOGGKp 474 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIR-----DAYMHPQFVNDVMKPLQIENIIDQE---------VQGLSGGELQRVALALCLGKP 474 (592)
T ss_pred cccCccccchHHHHHHHHhH-----hhhcCHHHHHhhhhhhhHHHHHhHH---------hhcCCchhhHHHHHHHhcCCC
Confidence 97643 56788875531110 0112234456677777777776653 678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchh
Q psy11400 253 PQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 253 P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~ 294 (298)
.++.+.|||.+-||.+.+... .+.+-..++|-.+|.|+.-..
T Consensus 475 AdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIma 520 (592)
T KOG0063|consen 475 ADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA 520 (592)
T ss_pred CceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH
Confidence 999999999999998765433 333334578999999986543
No 417
>KOG0065|consensus
Probab=99.15 E-value=3e-11 Score=127.15 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=120.4
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc---CCceeec--------cCCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL---FGGTVTK--------PPRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~---~~G~i~~--------~~r~~ 168 (298)
+++|++.-+++|+.+.+. ||- || |++. + +|-.+- ..|+|+. ..++.
T Consensus 130 il~~~sg~~~pg~m~lvL--------G~pgsG~ttllka-------l----~g~~~~~~~~~~~isy~G~~~~e~~~~~~ 190 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVL--------GPPGSGKTTLLKA-------L----AGKLDNFLKSSGEITYNGHDLKEFVPKKT 190 (1391)
T ss_pred eecCcceeEcCCceEEEe--------cCCCCchHHHHHH-------H----hCCCcccccCCCceeECCCcccccccCce
Confidence 899999999999999999 988 99 7777 5 222211 1234432 12567
Q ss_pred EEEEcCcCC-CCCCCHHHHHccCCcchhh---hhcCCCH-H----HHHHHHHHcCCchhhhhcCCcccccc--cCCCCCh
Q psy11400 169 LFYVPQRPY-MTLGTLRDQVIYPHTKEDM---IQKGITD-A----DLTEYLQKVQLGYILNREKGWDTVAD--WIDVLSG 237 (298)
Q Consensus 169 i~~v~Q~~~-l~~~tv~eni~~~~~~~~~---~~~~~~~-~----~i~~~l~~~~l~~~~~~~~g~d~~~~--~~~~LSg 237 (298)
++|.+|+.. ++..||+|-+-|....... .. +.++ + ..+.+++.+||++-. ||.++ ...-.||
T Consensus 191 ~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~-~~~R~e~~~~~~d~~lkilGL~~~~------dT~VGnd~~RGvSG 263 (1391)
T KOG0065|consen 191 VAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD-EVSRREKLAAMTDYLLKILGLDHCA------DTLVGNDMVRGVSG 263 (1391)
T ss_pred EEeccccccccceeEEeehhhHHHhccCCccccc-cccHHHHHHHHHHHHHHHhCchhhc------cceecccccccccC
Confidence 999999875 4567999988775432111 11 1222 2 244778888987643 45443 4568999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
|||+||++|-+++.+|+++++||+|.|||..+.-++.+.+++ .+.|.+++-|+.+-
T Consensus 264 GerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~ 323 (1391)
T KOG0065|consen 264 GERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSP 323 (1391)
T ss_pred cccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCCh
Confidence 999999999999999999999999999999988888877765 37888888887764
No 418
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.1e-10 Score=124.76 Aligned_cols=66 Identities=15% Similarity=0.055 Sum_probs=58.7
Q ss_pred cCCCCChhHHHHHHHHHHHhc----------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYH----------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~----------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
.+.+|||||++|++||+||+. +|++|||||||++||+.....+.+.+++ .|++|++|||++.+...
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 467999999999999999986 7999999999999999999888877654 48999999999987654
No 419
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.3e-10 Score=115.51 Aligned_cols=84 Identities=31% Similarity=0.417 Sum_probs=66.8
Q ss_pred HHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh---c
Q psy11400 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE---V 280 (298)
Q Consensus 207 ~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~---~ 280 (298)
.+.|..+||.++. +.....+|||||-|||-||.-|..+. -++||||||.||-..-.+++++.+.+ .
T Consensus 803 LqtL~dVGLgYi~--------LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~ 874 (935)
T COG0178 803 LQTLVDVGLGYIK--------LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK 874 (935)
T ss_pred HHHHHHcCcceEe--------cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3445566665431 12235799999999999999999988 89999999999988777777766554 5
Q ss_pred CcEEEEEecCcchhhhcC
Q psy11400 281 GITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 281 ~~TiIiitH~l~~~~~~~ 298 (298)
|-|||+|.|+++.++..|
T Consensus 875 GnTViVIEHNLdVIk~AD 892 (935)
T COG0178 875 GNTVIVIEHNLDVIKTAD 892 (935)
T ss_pred CCEEEEEecccceEeecC
Confidence 999999999999988654
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.12 E-value=9e-10 Score=113.91 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=52.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~ 295 (298)
.+++|+|++|+..|++++ .+|+++|||||++|+|+.....+ .+.+.+.++++|++||..++..
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 468999999999999887 79999999999999999766554 3444456899999999987644
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.07 E-value=3.4e-10 Score=100.29 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=39.6
Q ss_pred HHHHHH--hcCCCEEEEecc---ccCCCHHHH-HHHHHHHHhc-CcEEEEEecCcchhh
Q psy11400 244 AMARLF--YHRPQFAILDEC---TSAVSVDVE-GSMYEYCREV-GITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL--~~~P~iliLDEP---Ts~LD~~~~-~~i~~~l~~~-~~TiIiitH~l~~~~ 295 (298)
.+++++ +.+|++++|||| |+++|.... ..+.+.+.+. +.|+|++||+.++..
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE 157 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence 344444 469999999999 999998653 4566766665 899999999976543
No 422
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=2.9e-10 Score=119.49 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=55.4
Q ss_pred cCCCCChhHHH------HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
.+..|||||+| |++||++++.+|+++||||||++||+.....+.+++.. .+.|+|+|||+..+...
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~ 859 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDA 859 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHh
Confidence 35689999999 55666788899999999999999999998888887654 36799999999876543
No 423
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.05 E-value=3.4e-10 Score=120.96 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=56.7
Q ss_pred cCCCCChhHHHHHHHHHHHhc--------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYH--------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW 294 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~--------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~ 294 (298)
.+.+|||||+|+++||+||+. +|+++||||||++||+.+...+++.+.. .|+||++|||...+.
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK 1020 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHH
Confidence 468999999999999999996 8999999999999999999888877654 589999999976654
No 424
>PRK01156 chromosome segregation protein; Provisional
Probab=99.05 E-value=3.7e-10 Score=119.06 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=56.3
Q ss_pred cCCCCChhHHHHHHH------HHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hc-C-cEEEEEecCcchhhhc
Q psy11400 231 WIDVLSGGEKQRVAM------ARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EV-G-ITLFTVSHRKSLWTHH 297 (298)
Q Consensus 231 ~~~~LSgGqkQRlai------ARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~-~-~TiIiitH~l~~~~~~ 297 (298)
.+..|||||++|++| ||+|+.+|++++|||||++||+.....+.+.+. .. + .|+|+|||+...+...
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 367899999999975 599999999999999999999998888877654 22 2 4899999999877643
No 425
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.03 E-value=3.3e-10 Score=121.63 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=57.7
Q ss_pred cCCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
.+..||||||||++||++++ .+|+++||||||++||+.....+.++++.. +.++|+|||++.....
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~ 1157 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEV 1157 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHH
Confidence 46789999999999999984 677999999999999999999888887653 6789999999987653
No 426
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=7.1e-10 Score=101.41 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=50.6
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
..+|+||||++++||+|+ .+|++++|||||++||+.....+.+.+++.+.++|+++|...
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~ 250 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLAD 250 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchh
Confidence 458999999999999985 799999999999999999999999999876655555555443
No 427
>KOG0063|consensus
Probab=98.97 E-value=2e-10 Score=108.81 Aligned_cols=83 Identities=27% Similarity=0.331 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC
Q psy11400 205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG 281 (298)
Q Consensus 205 ~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~ 281 (298)
...++++.+.|+...++. ...||||+-||.+||.+.+++.++.++|||.|.||...+-+....++. .+
T Consensus 193 ~~~~~~~~~~L~~~~~re---------~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~ 263 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDRE---------VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPD 263 (592)
T ss_pred cHHHHHHHHHHhhHHHhh---------hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCC
Confidence 345666777777666553 578999999999999999999999999999999998766544444433 47
Q ss_pred cEEEEEecCcchhhh
Q psy11400 282 ITLFTVSHRKSLWTH 296 (298)
Q Consensus 282 ~TiIiitH~l~~~~~ 296 (298)
.=+|+|.||++..-+
T Consensus 264 ~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 264 RYIIVVEHDLSVLDY 278 (592)
T ss_pred CeEEEEEeechHHHh
Confidence 889999999997643
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.96 E-value=2.1e-10 Score=99.04 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred CCCCChhHHHHHHHHHHHhc--CCCEEEEeccccCCCHHHHHHH----HHHHHh-cCcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYH--RPQFAILDECTSAVSVDVEGSM----YEYCRE-VGITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~--~P~iliLDEPTs~LD~~~~~~i----~~~l~~-~~~TiIiitH~l~~~~ 295 (298)
.+++|+|++|. ++++.. +|+++|+|||++++|+.....+ .+.+.+ .+.++|++||+.++.+
T Consensus 59 ~s~fs~~~~~l---~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 59 LSTFMVEMKET---ANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred ccHHHHHHHHH---HHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 46789888874 444444 9999999999999999855443 333344 3889999999987654
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.90 E-value=1.3e-09 Score=98.52 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=60.4
Q ss_pred cCCcccccc-cCCCCChhH--------HHHHHHHHHHhcCCCEEEEeccccCCCHHHHH--HHHHHHHhcCcEEEEEecC
Q psy11400 222 EKGWDTVAD-WIDVLSGGE--------KQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 222 ~~g~d~~~~-~~~~LSgGq--------kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~--~i~~~l~~~~~TiIiitH~ 290 (298)
+.++++... .+..+|||+ +||+++||++..+++|.+| ||+.+|..++. -+.+.++..+.|.|+++|+
T Consensus 116 a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~ 193 (249)
T cd01128 116 ARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRR 193 (249)
T ss_pred hhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchH
Confidence 455666654 677899999 9999999999999999999 99999964332 4455565567899999999
Q ss_pred cchhhhcC
Q psy11400 291 KSLWTHHE 298 (298)
Q Consensus 291 l~~~~~~~ 298 (298)
++...+++
T Consensus 194 la~~~~~p 201 (249)
T cd01128 194 LAERRIFP 201 (249)
T ss_pred HhhCCCCC
Confidence 99887764
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.89 E-value=6.2e-09 Score=92.05 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccccCCCHHH-HHH---HHHHHHhc---CcEEEEEecCcchhhh
Q psy11400 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDV-EGS---MYEYCREV---GITLFTVSHRKSLWTH 296 (298)
Q Consensus 238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~-~~~---i~~~l~~~---~~TiIiitH~l~~~~~ 296 (298)
-+-||+++|++++.+|++++||||++|+|+.. ... +.+.+.+. +.++|++||+.+.++.
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 35599999999999999999999999999854 222 23333332 2489999999987754
No 431
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.89 E-value=2.2e-09 Score=115.44 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=58.1
Q ss_pred cCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
++..||||||++++||++|+. .|+++|||||+++||+.....+.+++.+. +.++|+|||+..++..
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~ 1142 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEY 1142 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHh
Confidence 456899999999999999984 78999999999999999999999888763 5789999999887654
No 432
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=4.9e-09 Score=99.94 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=56.9
Q ss_pred CCCChhHHHHHHHHHHHhc---------CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 233 DVLSGGEKQRVAMARLFYH---------RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~---------~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
..+|.|||++++||.+|+. +|++++||||+|+||+...+.+.+.+.+.|.+++++||+++.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~ 344 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHL 344 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhc
Confidence 3689999999999999999 9999999999999999999999999976578999999988643
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.83 E-value=9.5e-09 Score=106.60 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=53.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
.+++|+|++|++.|++++ .+|+++|||||++|+|+.....+ .+.+.+.+.++|++||+.++..+
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 468999999999999998 89999999999999999755544 34455568999999999887654
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=6.5e-09 Score=92.49 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=77.3
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc-ccccCCceeeccCCCcEEEEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ-LWPLFGGTVTKPPRGKLFYVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~-l~~~~~G~i~~~~r~~i~~v~Q~~~l 178 (298)
+.+|++|.+++|++++|+ ||| || +++. + ++ .+.+..|.......-+++|..|
T Consensus 20 v~n~i~~~~~~g~~~~it--------G~N~~GKStll~~-------i----~~~~~la~~G~~v~a~~~~~~~~~~---- 76 (222)
T cd03287 20 VPNDIHLSAEGGYCQIIT--------GPNMGGKSSYIRQ-------V----ALITIMAQIGSFVPASSATLSIFDS---- 76 (222)
T ss_pred EEEeEEEEecCCcEEEEE--------CCCCCCHHHHHHH-------H----HHHHHHHhCCCEEEcCceEEeccce----
Confidence 889999999999999999 999 99 8888 6 55 4556666643222223433322
Q ss_pred CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy11400 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258 (298)
Q Consensus 179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliL 258 (298)
|.... .. .+.+. -++. ++ ..|-++++-+-.-+.+|+++||
T Consensus 77 --------i~~~~--------~~-~d~~~-----~~~S-----------------tF-~~e~~~~~~il~~~~~~sLvll 116 (222)
T cd03287 77 --------VLTRM--------GA-SDSIQ-----HGMS-----------------TF-MVELSETSHILSNCTSRSLVIL 116 (222)
T ss_pred --------EEEEe--------cC-ccccc-----cccc-----------------hH-HHHHHHHHHHHHhCCCCeEEEE
Confidence 21100 00 00000 0111 11 1223333333334568999999
Q ss_pred eccccCCCH---HH-HHHHHHHHHhc-CcEEEEEecCcchhh
Q psy11400 259 DECTSAVSV---DV-EGSMYEYCREV-GITLFTVSHRKSLWT 295 (298)
Q Consensus 259 DEPTs~LD~---~~-~~~i~~~l~~~-~~TiIiitH~l~~~~ 295 (298)
|||.+|.|+ .. ...+.+.+.+. +.++|++||+.++..
T Consensus 117 DE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 117 DELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred ccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 999777664 33 23455555554 889999999998754
No 435
>PRK00064 recF recombination protein F; Reviewed
Probab=98.80 E-value=9e-09 Score=98.02 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400 233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL 293 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~ 293 (298)
..+|.||||++++|++|+ .+|++++||||+++||+.....+.+.+.+.+..++++||+...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~ 341 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLED 341 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhh
Confidence 579999999999999986 7999999999999999999999999987656789999998654
No 436
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.76 E-value=1.3e-08 Score=111.19 Aligned_cols=61 Identities=23% Similarity=0.431 Sum_probs=55.3
Q ss_pred cCCCCChhHHHHHH----HHHH--------HhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400 231 WIDVLSGGEKQRVA----MARL--------FYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK 291 (298)
Q Consensus 231 ~~~~LSgGqkQRla----iARa--------L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l 291 (298)
....|||||||+++ +|++ +..+|++++|||||++||+.....+++++.+.+.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccch
Confidence 45789999999996 5755 4589999999999999999999999999999999999999986
No 437
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=1.6e-08 Score=106.51 Aligned_cols=65 Identities=31% Similarity=0.428 Sum_probs=54.4
Q ss_pred CCCCChhHHH------HHHHHHHHhcC-----C-CEEEEeccccCCCHHHHHHHHHHHHh---cCc-EEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQ------RVAMARLFYHR-----P-QFAILDECTSAVSVDVEGSMYEYCRE---VGI-TLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQ------RlaiARaL~~~-----P-~iliLDEPTs~LD~~~~~~i~~~l~~---~~~-TiIiitH~l~~~~ 295 (298)
+..||||||| |+++|+++... | +++||||||++||+.....+.++++. .|. +||+|||+...+.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4689999999 99999999864 3 67999999999999988888877654 244 7999999998775
Q ss_pred h
Q psy11400 296 H 296 (298)
Q Consensus 296 ~ 296 (298)
.
T Consensus 859 ~ 859 (880)
T PRK02224 859 A 859 (880)
T ss_pred h
Confidence 4
No 438
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.68 E-value=9.1e-08 Score=84.40 Aligned_cols=64 Identities=30% Similarity=0.505 Sum_probs=50.4
Q ss_pred CCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
..||||||.+++||-.| +..++++||||+.++||......+.+++++. +.-+|++||+..+...
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 48999999999998665 3567899999999999999999999999875 4889999999887654
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.64 E-value=9e-08 Score=97.12 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=58.0
Q ss_pred cccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHH---HHhcCcEEEEEecCcchhhhcC
Q psy11400 229 ADWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEY---CREVGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 229 ~~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~---l~~~~~TiIiitH~l~~~~~~~ 298 (298)
.+...+|||||.||+-||.-+-..= =+++||||+.||-+.--+++.+. +++.|-|+|+|.||.++++..|
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD 550 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAAD 550 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcC
Confidence 3456799999999999999998775 48899999999977666666555 4557999999999999988654
No 440
>PRK14079 recF recombination protein F; Provisional
Probab=98.46 E-value=3.2e-07 Score=87.04 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
..+|+|||+++++|+.|+ .+|++++||||+|.||......+.+.+.....++|..|+..+.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~~~~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTEAPPGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCCCCCCC
Confidence 368999999999999998 89999999999999999999999998865445666666655443
No 441
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.38 E-value=7.3e-07 Score=94.45 Aligned_cols=66 Identities=26% Similarity=0.277 Sum_probs=55.0
Q ss_pred cCCCCChhHHHHHHHHHHHh------cC--CCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFY------HR--PQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~------~~--P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
...+|||||+=.++||-+|+ .+ -+++||||||..||++....+.+.+.+ .+.+|++|||+..+...
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHh
Confidence 46789999999877766654 56 699999999999999999988887764 37899999999887654
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.36 E-value=1.6e-06 Score=75.58 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=51.5
Q ss_pred CCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEEecCcchh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSLW 294 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~ 294 (298)
...+|.|+||.+.++.+++..+ .++++|||-++|.|.....+.+.+++. +.-+|++||.+.++
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3567999999999998888777 899999999999999999999988753 57999999998765
No 443
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=7.7e-07 Score=79.01 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHH----HHHHHHhc-CcEEEEEecCcchhhh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREV-GITLFTVSHRKSLWTH 296 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~----i~~~l~~~-~~TiIiitH~l~~~~~ 296 (298)
-++++-.-..+.+|++++||||++|.++..... +.+.+.+. +.++|++||+.++...
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 344443334457899999999999998865333 34444444 8999999999887653
No 444
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.31 E-value=5.6e-07 Score=70.95 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=48.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-----------cCCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-----------PPRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-----------~~r~~ 168 (298)
+|++++|++++|+.++|+ ||| || |+++ + . +|++.. ..++.
T Consensus 4 aL~~vsl~i~~ge~v~I~--------GpSGsGKSTLl~~-------l----~------~G~i~~~g~di~~~~~~~~~~~ 58 (107)
T cd00820 4 SLHGVLVDVYGKVGVLIT--------GDSGIGKTELALE-------L----I------KRKHRLVGDDNVEIREDSKDEL 58 (107)
T ss_pred EEEeeEEEEcCCEEEEEE--------cCCCCCHHHHHHH-------h----h------CCeEEEeeEeHHHhhhhhcCCE
Confidence 899999999999999999 999 99 7877 4 1 333321 12445
Q ss_pred EEEEcCcCCCCCCCHHHHHccCC
Q psy11400 169 LFYVPQRPYMTLGTLRDQVIYPH 191 (298)
Q Consensus 169 i~~v~Q~~~l~~~tv~eni~~~~ 191 (298)
++++||+ +|.+|++|||.++.
T Consensus 59 ~~~~~q~--lf~~ti~~Ni~~~~ 79 (107)
T cd00820 59 IGRNPEL--GLEIRLRLNIFLIT 79 (107)
T ss_pred EEEechh--cchhhHHhhceeee
Confidence 7788887 89999999999864
No 445
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.30 E-value=1.6e-06 Score=66.24 Aligned_cols=49 Identities=31% Similarity=0.433 Sum_probs=36.8
Q ss_pred cCCCCChhHHHH-HH------HHHHHhc------CCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 231 WIDVLSGGEKQR-VA------MARLFYH------RPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 231 ~~~~LSgGqkQR-la------iARaL~~------~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
....+||||||. +. ++..+-. .|++++|||||++||++..+.+++++++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 356899999954 33 3333333 3799999999999999999999998864
No 446
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.12 E-value=3.2e-06 Score=74.23 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCChh--HHHHHHHHHHHhcCCCEEEEeccc-----cCCCHHHHHHHHHHHHhc
Q psy11400 234 VLSGG--EKQRVAMARLFYHRPQFAILDECT-----SAVSVDVEGSMYEYCREV 280 (298)
Q Consensus 234 ~LSgG--qkQRlaiARaL~~~P~iliLDEPT-----s~LD~~~~~~i~~~l~~~ 280 (298)
..||+ |++++.|||+++.+|+++++|||| ++||+...+.+.+.+++.
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 34444 999999999999999999999999 999999999999988763
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.11 E-value=1.8e-05 Score=67.50 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=48.3
Q ss_pred cCCCCChhHHH------HHHHHHHHhcCCCEEEEeccccCCC---HHHHHHHHHH---HHhcCcEEEEEecCcch
Q psy11400 231 WIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVS---VDVEGSMYEY---CREVGITLFTVSHRKSL 293 (298)
Q Consensus 231 ~~~~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD---~~~~~~i~~~---l~~~~~TiIiitH~l~~ 293 (298)
.+..+|+|++| +...+.+...+|+++++|||++.+| ......+.++ +++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 35689999998 5555555678999999999999999 5555555444 44568999999998754
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.07 E-value=1.1e-05 Score=73.99 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400 248 LFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL 293 (298)
Q Consensus 248 aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~ 293 (298)
+..++|+++++|||++. +....+.+.+. .|+|+|+++|+.+.
T Consensus 190 i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 190 IRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDV 231 (270)
T ss_pred HHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHH
Confidence 33369999999999853 33344445444 49999999998765
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.00 E-value=2.1e-05 Score=76.39 Aligned_cols=141 Identities=18% Similarity=0.016 Sum_probs=91.4
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
++.+.++..|..+-. +++. .|.+.+|++++|+ |++ || |+++ + .+..++
T Consensus 131 ~~r~~i~~~l~TGir--------aID~-ll~I~~Gqri~I~--------G~sG~GKTtLl~~-------I----a~~~~~ 182 (432)
T PRK06793 131 FEREEITDVFETGIK--------SIDS-MLTIGIGQKIGIF--------AGSGVGKSTLLGM-------I----AKNAKA 182 (432)
T ss_pred hheechhhccCCCCE--------EEec-cceecCCcEEEEE--------CCCCCChHHHHHH-------H----hccCCC
Confidence 455555555543332 7776 5999999999999 999 99 7887 6 666655
Q ss_pred CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS 236 (298)
+.|. |+++.|+. .++.|.+. ..+..-++.. ..+.-...+-|
T Consensus 183 ~~gv--------I~~iGerg----~ev~e~~~-------------------~~l~~~gl~~--------tvvv~~tsd~s 223 (432)
T PRK06793 183 DINV--------ISLVGERG----REVKDFIR-------------------KELGEEGMRK--------SVVVVATSDES 223 (432)
T ss_pred CeEE--------EEeCCCCc----ccHHHHHH-------------------HHhhhcccce--------eEEEEECCCCC
Confidence 5443 44555543 23333332 1111112211 01112246789
Q ss_pred hhHHHHHHHHHHHh-------cCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11400 237 GGEKQRVAMARLFY-------HRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR 290 (298)
Q Consensus 237 gGqkQRlaiARaL~-------~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~ 290 (298)
.|+|+|++.+.+.+ .++-++++|++|...|+. +++...+.+ .|.+..+.+|-
T Consensus 224 ~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l 285 (432)
T PRK06793 224 HLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM 285 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc
Confidence 99999999999988 899999999999999986 344444433 26777777773
No 450
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.97 E-value=6.6e-05 Score=67.17 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEeccccCC----CHHHHHHHHHHHH---hcCcEEEEEecCcc
Q psy11400 234 VLSGGEKQRVAMARLFYH----RPQFAILDECTSAV----SVDVEGSMYEYCR---EVGITLFTVSHRKS 292 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~L----D~~~~~~i~~~l~---~~~~TiIiitH~l~ 292 (298)
.+|+++.++-.+++.+-. +|+++++||||+++ |+...+.+.+.++ +.|.|+++ ||+..
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~ 163 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPK 163 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eeccc
Confidence 467776666555554443 69999999999999 6666666666655 34776655 55544
No 451
>PRK13695 putative NTPase; Provisional
Probab=97.78 E-value=4.7e-05 Score=64.76 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEec--cccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDE--CTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL 293 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDE--PTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~ 293 (298)
...+||+++-++.+++..+.+|+++++|| |+..+|....+.+.+.+ +.+.++|+++|+...
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~ 138 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSV 138 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhh
Confidence 45799999999999999999999999999 66677777777777777 568999999998543
No 452
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.58 E-value=0.0007 Score=71.45 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=46.6
Q ss_pred CCChhHHHHHHHHHHHhc--CCCEEEEecc---ccCCCHHHH-HHHHHHHHhc-CcEEEEEecCcchhh
Q psy11400 234 VLSGGEKQRVAMARLFYH--RPQFAILDEC---TSAVSVDVE-GSMYEYCREV-GITLFTVSHRKSLWT 295 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~--~P~iliLDEP---Ts~LD~~~~-~~i~~~l~~~-~~TiIiitH~l~~~~ 295 (298)
.+|-=+.....++++|-. ++.++||||| |+.+|.... ..+.+.+.+. ++++|++||..++..
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 456666666777777665 8999999999 999997653 3466776665 589999999976543
No 453
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.47 E-value=0.00025 Score=72.76 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHHHHHh------cCCCEEEEeccccCCCHHHHHHHHH-HHHhcCcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFY------HRPQFAILDECTSAVSVDVEGSMYE-YCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~------~~P~iliLDEPTs~LD~~~~~~i~~-~l~~~~~TiIiitH~l~~~~ 295 (298)
...|||||||-++||-.+. .+.++ |+||||+.||..-+..+.+ ++.+...-||+.||+-+...
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~ 618 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDE 618 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCH
Confidence 4579999999976655443 24566 5699999999988888774 66666778899999876543
No 454
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.45 E-value=0.00094 Score=54.70 Aligned_cols=62 Identities=21% Similarity=0.097 Sum_probs=45.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCC----------CHHHHHHHHHH---HHhcCcEEEEEecCcchh
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----------SVDVEGSMYEY---CREVGITLFTVSHRKSLW 294 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~L----------D~~~~~~i~~~---l~~~~~TiIiitH~l~~~ 294 (298)
...+.++.++++.+++...+|+++++||+++-+ |....+.+.++ +++.++|+|+++|.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666777889999999999999999999544 44434444443 444689999999987543
No 455
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.00032 Score=76.41 Aligned_cols=66 Identities=29% Similarity=0.426 Sum_probs=57.1
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhc
Q psy11400 232 IDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHH 297 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~ 297 (298)
...||||||-..|||-.|+ ...++.+|||--++||......+.+++++. +.=.|+||||..+....
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~a 1135 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAA 1135 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHH
Confidence 3469999999999998885 556999999999999999999999999874 56789999999876543
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.32 E-value=0.0025 Score=56.70 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHHhc--CCCEEEEeccccCC---CHHHHHHHHHHH---HhcCcEEEEEecCcch
Q psy11400 234 VLSGGEKQRVAMARLFYH--RPQFAILDECTSAV---SVDVEGSMYEYC---REVGITLFTVSHRKSL 293 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~--~P~iliLDEPTs~L---D~~~~~~i~~~l---~~~~~TiIiitH~l~~ 293 (298)
..|.++++.+..++.++. +|+++++||||+.+ |......+.+.+ ++.+.|+++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 457889999999999997 99999999999654 444334443333 3458999999997653
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.32 E-value=0.00023 Score=63.79 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHhcCCCEEEEeccccC------CCHHHHHHHHHHH----HhcCcEEEEEecCc
Q psy11400 248 LFYHRPQFAILDECTSA------VSVDVEGSMYEYC----REVGITLFTVSHRK 291 (298)
Q Consensus 248 aL~~~P~iliLDEPTs~------LD~~~~~~i~~~l----~~~~~TiIiitH~l 291 (298)
+...+|+++|+| |+++ +|+.....+.+.+ ++.|+|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 346899999999 7764 5777666555544 34599999999975
No 458
>KOG0964|consensus
Probab=97.03 E-value=0.00036 Score=72.13 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=54.8
Q ss_pred CCCChhHHHHHHHHHHHhc---C-CCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLFYH---R-PQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~---~-P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
.+||||||--||||..|+- + +++++|||.-+|||++.+..+-.++++. ..-.|++|-|+++++.
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~v 1165 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSV 1165 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHH
Confidence 3799999999999999863 3 4899999999999999999988888874 4567889999988764
No 459
>PF13175 AAA_15: AAA ATPase domain
Probab=96.96 E-value=0.0021 Score=61.35 Aligned_cols=64 Identities=11% Similarity=0.221 Sum_probs=51.2
Q ss_pred cCCCCChhHHHHHHHHHHHh------cC-CC---EEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 231 WIDVLSGGEKQRVAMARLFY------HR-PQ---FAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~------~~-P~---iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
....+|.|.++.+.|+-.+. .+ +. ++++|||-+.|.|..++.+.+.+.+ .+..+|++||.+.++
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ii 415 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFII 415 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhhC
Confidence 34679999998888776652 22 22 9999999999999999999888765 378999999988653
No 460
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.93 E-value=0.0023 Score=59.45 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHHHhc--CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLFYH--RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~--~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
..||-|+.+-+++|-+|+. .|.+++||||-.+|-|.....+.++.++. ..-||++||-..++..
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhh
Confidence 4899999999999999984 58999999999999999888888777653 3489999999887764
No 461
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.90 E-value=0.0032 Score=58.74 Aligned_cols=48 Identities=17% Similarity=0.035 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
.++.+|..+|+++++|||.+ .+.. .+++.+...+.+++.++|..+...
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~---~e~~-~~l~a~~~g~~~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRG---DEAF-DFIRAVNTGHPGSITTLHAGSPEE 257 (308)
T ss_pred HHHHHhcCCCCeEEEeccCC---HHHH-HHHHHHhcCCCeEEEEEeCCCHHH
Confidence 56778899999999999997 3332 233433332346799999987543
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.84 E-value=0.0056 Score=59.89 Aligned_cols=38 Identities=11% Similarity=-0.049 Sum_probs=33.8
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
+++++ |.+.+|++++|+ |+| || |+++ + .++++++.|.+
T Consensus 148 vid~l-~~i~~Gq~i~I~--------G~sG~GKStLl~~-------I----~~~~~~~~gvI 189 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIF--------AGSGVGKSTLMGM-------I----ARNTSADLNVI 189 (438)
T ss_pred hhhee-eeecCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccCCCeEEE
Confidence 89999 999999999999 999 99 8888 7 88888877765
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.75 E-value=0.0024 Score=67.53 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHHHHhcCCCEEEEeccccCC-CHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400 245 MARLFYHRPQFAILDECTSAV-SVDVEGSMYEYCR---EVGITLFTVSHRKSLWT 295 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~L-D~~~~~~i~~~l~---~~~~TiIiitH~l~~~~ 295 (298)
|++++..+|+++++|||+.+| |+...+.+.+.++ +.|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 678889999999999999999 6887777766654 46899999999998654
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.66 E-value=0.0014 Score=62.98 Aligned_cols=45 Identities=20% Similarity=0.055 Sum_probs=39.3
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCccccee-----------eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFF-----------DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~-----------~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.+.+.|+||+|.||+.+. +|+ |+++.|.+|+.++|+ ||+ || |++.
T Consensus 128 ~~ri~Fe~LTf~YP~er~--------~Le~~~~~~~~R~id~~~pig~Gq~~~Iv--------G~~g~GKTtL~~~ 187 (415)
T TIGR00767 128 KNRVLFENLTPLYPNERL--------RLETSTEDLSTRVLDLFAPIGKGQRGLIV--------APPKAGKTVLLQK 187 (415)
T ss_pred CCCeEEEEeeecCCCccc--------eeecCccccceeeeeeEEEeCCCCEEEEE--------CCCCCChhHHHHH
Confidence 356999999999997655 786 999999999999999 999 99 6666
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.0034 Score=61.97 Aligned_cols=59 Identities=12% Similarity=-0.085 Sum_probs=41.9
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT 179 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~ 179 (298)
++++.++.+++|.+++++ ||| || ++.. | ++.+....|. .+|+++.+++ +
T Consensus 245 ~~~~~~~~~~~g~Vi~Lv--------GpnGvGKTTTiaK-------L----A~~~~~~~G~------~kV~LI~~Dt--~ 297 (484)
T PRK06995 245 VLDSEDALLDRGGVFALM--------GPTGVGKTTTTAK-------L----AARCVMRHGA------SKVALLTTDS--Y 297 (484)
T ss_pred hccCccccccCCcEEEEE--------CCCCccHHHHHHH-------H----HHHHHHhcCC------CeEEEEeCCc--c
Confidence 556677778899999999 999 99 4443 4 6655444442 3689999998 4
Q ss_pred CCCHHHHHcc
Q psy11400 180 LGTLRDQVIY 189 (298)
Q Consensus 180 ~~tv~eni~~ 189 (298)
..+..|++.+
T Consensus 298 RigA~EQLr~ 307 (484)
T PRK06995 298 RIGGHEQLRI 307 (484)
T ss_pred chhHHHHHHH
Confidence 4566777754
No 466
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=96.48 E-value=0.0042 Score=65.43 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=38.7
Q ss_pred hcCCCEEEEeccccCC-CHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400 250 YHRPQFAILDECTSAV-SVDVEGSMYEYCR---EVGITLFTVSHRKSLWT 295 (298)
Q Consensus 250 ~~~P~iliLDEPTs~L-D~~~~~~i~~~l~---~~~~TiIiitH~l~~~~ 295 (298)
..+|+++++|||+.+| |+...+.+.+.++ +.|.+++++||+++.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5799999999999999 6887777776654 45899999999998653
No 467
>PF13166 AAA_13: AAA domain
Probab=96.39 E-value=0.0089 Score=61.79 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=51.7
Q ss_pred CCCCChhHHHHHHHHHHH--hc-------CCCEEEEeccccCCCHHHHHHHHHHHHhc-----CcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLF--YH-------RPQFAILDECTSAVSVDVEGSMYEYCREV-----GITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL--~~-------~P~iliLDEPTs~LD~~~~~~i~~~l~~~-----~~TiIiitH~l~~~~ 295 (298)
...||-|||.-||||-=| +. +..++|+|.|-|+||...+..+...+++. .+-||+-||++....
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHH
Confidence 468999999999988422 33 67899999999999998888877776653 467999999987654
No 468
>KOG0933|consensus
Probab=96.25 E-value=0.004 Score=64.89 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11400 233 DVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHR 290 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~ 290 (298)
.+||||||-.|||+..| ++.++++||||--+|||..--+.|-++++.. +.-.|+||-.
T Consensus 1081 ~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLK 1144 (1174)
T KOG0933|consen 1081 SELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLK 1144 (1174)
T ss_pred HHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEch
Confidence 47999999999876554 4677999999999999998777788888763 6667777643
No 469
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=96.04 E-value=0.014 Score=56.53 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=56.9
Q ss_pred HHcCCchhhhh-cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCC-----CHHHHHHH-----------
Q psy11400 211 QKVQLGYILNR-EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV-----SVDVEGSM----------- 273 (298)
Q Consensus 211 ~~~~l~~~~~~-~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~L-----D~~~~~~i----------- 273 (298)
..+++..|++. |.|.||..---.+=||-.-|=..|..|+=...++|++||=|||- |...+..+
T Consensus 298 ~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfi 377 (448)
T PF09818_consen 298 EGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFI 377 (448)
T ss_pred eCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHH
Confidence 44566666544 77777764344678999999999999999999999999999996 55544433
Q ss_pred ---HHHHHhcCcEEEEEe
Q psy11400 274 ---YEYCREVGITLFTVS 288 (298)
Q Consensus 274 ---~~~l~~~~~TiIiit 288 (298)
.++.++.|.+.|+|+
T Consensus 378 drvr~l~~~~GvStIlV~ 395 (448)
T PF09818_consen 378 DRVRSLYEKLGVSTILVV 395 (448)
T ss_pred HHHHHHHHHcCceEEEEe
Confidence 223345687777765
No 470
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.90 E-value=0.02 Score=49.86 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+++++|..+|+++++||+. |.+....+.+... .|.+++.++|..+...
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~-~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAAE-TGHLVMSTLHTNSAAK 113 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHH-cCCEEEEEecCCcHHH
Confidence 5789999999999999996 6776666666554 4899999999987654
No 471
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=95.85 E-value=0.06 Score=56.92 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=35.2
Q ss_pred hcCCCEEEEecc---ccCCCHHH-HHHHHHHHHh-cCcEEEEEecCcchhh
Q psy11400 250 YHRPQFAILDEC---TSAVSVDV-EGSMYEYCRE-VGITLFTVSHRKSLWT 295 (298)
Q Consensus 250 ~~~P~iliLDEP---Ts~LD~~~-~~~i~~~l~~-~~~TiIiitH~l~~~~ 295 (298)
+.++.++|+||+ |+.+|... ...+.+.+.+ .++.++++||..++..
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 468899999999 66666655 4457777766 6889999999876543
No 472
>KOG0962|consensus
Probab=95.76 E-value=0.012 Score=63.43 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCChhHHH------HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----H----hcCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----R----EVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~----~~~~TiIiitH~l~~~~~ 296 (298)
.-|-|||= |+|+|=.|..+..+|=|||||.+||......+...+ . +.+.-.|+|||+..++..
T Consensus 1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence 46889875 788999999999999999999999987665544332 2 137789999999887653
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.67 E-value=0.16 Score=39.40 Aligned_cols=59 Identities=25% Similarity=0.255 Sum_probs=45.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH---------HHHhcCcEEEEEecC
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE---------YCREVGITLFTVSHR 290 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~---------~l~~~~~TiIiitH~ 290 (298)
.....+++..+..+++|-..+|+++++||+..-.+......... .....+..+|.++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 34678889999999999998999999999999998876654432 222346788888884
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.59 E-value=0.008 Score=51.97 Aligned_cols=109 Identities=11% Similarity=-0.012 Sum_probs=61.1
Q ss_pred EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCc
Q psy11400 117 NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT 192 (298)
Q Consensus 117 ~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 192 (298)
+++|+ |+| || +.+. + .+++ .+ ..+.+++++.+....+..+.......
T Consensus 1 iigi~--------G~~GsGKSTl~~~-------l----~~~l--~~--------~~~~v~~~D~~~~~~~~~~~~~~~~~ 51 (198)
T cd02023 1 IIGIA--------GGSGSGKTTVAEE-------I----IEQL--GN--------PKVVIISQDSYYKDLSHEELEERKNN 51 (198)
T ss_pred CEEEE--------CCCCCCHHHHHHH-------H----HHHh--CC--------CCeEEEEecccccccccccHHHhccC
Confidence 37888 999 99 7777 6 5543 11 24667777765433222222111110
Q ss_pred chhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCH
Q psy11400 193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267 (298)
Q Consensus 193 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~ 267 (298)
.... ......+.+.+.+..+......+. +..++|.|++++..+ .+..|+++|+|+|+...++
T Consensus 52 ~~~~-~~~~~~~~~~~~l~~l~~~~~~~~---------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 52 NYDH-PDAFDFDLLISHLQDLKNGKSVEI---------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CCCC-CCcccHHHHHHHHHHHHCCCCEec---------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 0000 011223344455555544332222 245788888776555 5788999999999999875
No 475
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.57 E-value=0.015 Score=56.89 Aligned_cols=70 Identities=14% Similarity=0.053 Sum_probs=54.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.++.++++..|..+.. +++.++ .|.+|++++|+ |+| || |+++ + +++.
T Consensus 138 ~~~~r~~v~~~l~TGi~--------aID~L~-~I~~Gqri~I~--------G~SGsGKTTLL~~-------I----a~l~ 189 (450)
T PRK06002 138 PAMTRARVETGLRTGVR--------VIDIFT-PLCAGQRIGIF--------AGSGVGKSTLLAM-------L----ARAD 189 (450)
T ss_pred CCeEeecceEEcCCCcE--------Eeeeec-eecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 46889999999976644 888885 99999999999 999 99 8888 6 7777
Q ss_pred ccCCceeec------------------cCCCcEEEEcCcC
Q psy11400 155 PLFGGTVTK------------------PPRGKLFYVPQRP 176 (298)
Q Consensus 155 ~~~~G~i~~------------------~~r~~i~~v~Q~~ 176 (298)
+|+.|.+.. ..++.|+||+|..
T Consensus 190 ~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 190 AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 777665421 1235799999964
No 476
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.54 E-value=0.042 Score=47.78 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchh
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLW 294 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~ 294 (298)
..-|.||-=---+.+.+- +--+.|||||-|+|.+.-+-.+...++ +.|.-+|+.||.+=+.
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl 191 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL 191 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe
Confidence 356999987666666664 567999999999999986666665554 3588999999987543
No 477
>KOG0018|consensus
Probab=95.34 E-value=0.017 Score=60.80 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=53.7
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 232 IDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
..+||||||=-.|||..|. +..++.+|||--+|||.....++..+++..+.-.|+||-..++-
T Consensus 1049 m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr~~~~Q~IvISLK~~~y 1115 (1141)
T KOG0018|consen 1049 MDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIRSSNFQFIVISLKEEFY 1115 (1141)
T ss_pred hhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHhcCCceEEEEeccHHHh
Confidence 4689999999999999886 34689999999999999999999999987777888888655543
No 478
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.08 E-value=0.033 Score=58.70 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=37.1
Q ss_pred HhcCCCEEEEeccccCCC-HHHHHHHHHHH---HhcCcEEEEEecCcchhh
Q psy11400 249 FYHRPQFAILDECTSAVS-VDVEGSMYEYC---REVGITLFTVSHRKSLWT 295 (298)
Q Consensus 249 L~~~P~iliLDEPTs~LD-~~~~~~i~~~l---~~~~~TiIiitH~l~~~~ 295 (298)
+-.+|+++++|||+..|| +...+.+.+.+ ++.|.+++++||+++.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 446899999999999999 56666665554 446899999999987553
No 479
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=95.07 E-value=0.012 Score=57.93 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=25.4
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+|+++||++++||+++|+ ||| || |++.
T Consensus 21 vL~~Vsl~i~~GEiv~L~--------G~SGsGKSTLLr~ 51 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLC--------GSSGDGKSEILAE 51 (504)
T ss_pred HHhCCceeecCCCEEEEE--------CCCCCCHHHHHhc
Confidence 899999999999999999 999 99 7774
No 480
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.083 Score=52.86 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=51.5
Q ss_pred CCCChhHHHHHHHHHHHh--cC--CCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 233 DVLSGGEKQRVAMARLFY--HR--PQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~--~~--P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
...||||--|+++|--.+ .. .+.||+||--+|+.-.+...|-+.+++. ..-|++|||-+-.+.
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa 498 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAA 498 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHh
Confidence 357999999999886443 33 5599999999999999999998888874 577999999886554
No 481
>KOG0996|consensus
Probab=94.71 E-value=0.028 Score=59.69 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=52.6
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400 232 IDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~ 293 (298)
+.+||||||=.-+||-.|+ +..++++|||--+|||......+-.++++. +.-.|+||-|-+.
T Consensus 1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnM 1260 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNM 1260 (1293)
T ss_pred cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhH
Confidence 5689999999999988885 456999999999999999888888888863 6778888877654
No 482
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.074 Score=50.09 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=34.0
Q ss_pred EEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400 256 AILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW 294 (298)
Q Consensus 256 liLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~ 294 (298)
+++|||+.+||+.....+.+.+++. +.++|++||+++.+
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~l 156 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKV 156 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhC
Confidence 5578999999999999999999874 78899999998743
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=93.87 E-value=0.11 Score=54.84 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=38.0
Q ss_pred HHhcCCCEEEEeccccCCC-HHHHHHHHHHH---HhcCcEEEEEecCcchhh
Q psy11400 248 LFYHRPQFAILDECTSAVS-VDVEGSMYEYC---REVGITLFTVSHRKSLWT 295 (298)
Q Consensus 248 aL~~~P~iliLDEPTs~LD-~~~~~~i~~~l---~~~~~TiIiitH~l~~~~ 295 (298)
.+..+|.++++|||...|| +...+.+.+.+ ++.|.+++++||.++.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 689 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDAS 689 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3457899999999999999 76666666554 456889999999987543
No 484
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.42 E-value=0.26 Score=50.40 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=35.6
Q ss_pred HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 206 i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
..+.++.+++..... ++...+||| +|+||| +..||+..+..+.+.+++
T Consensus 244 a~~~l~~~gl~~~~~---------g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPEPKT---------GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCchhc---------CchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 344566666654332 235678998 999999 799999999999988865
No 485
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.10 E-value=0.19 Score=47.62 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+++++|..+|+++++||+. |+++.....+... .|.+++.+.|-.+...
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTAAE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHH-cCCcEEEEEcCCCHHH
Confidence 4678999999999999997 8888777666644 4899999999877543
No 486
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.07 E-value=0.2 Score=51.26 Aligned_cols=57 Identities=32% Similarity=0.413 Sum_probs=45.1
Q ss_pred CCCChhHHHHHH---HHHHHh--------cCC--CEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400 233 DVLSGGEKQRVA---MARLFY--------HRP--QFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289 (298)
Q Consensus 233 ~~LSgGqkQRla---iARaL~--------~~P--~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH 289 (298)
..+||||||+++ +|.+|. +.| ..+||||+++-=|+.....++..+++.|.-.++||-
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~fglh~v~iTP 1058 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREFGLHAVFITP 1058 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHcCceEEEech
Confidence 469999999995 455553 234 368999999999999999999988888777777763
No 487
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.86 E-value=0.014 Score=57.83 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCCCChhHHHHHHHH--HHHhcCCCEEEEeccccCCCHHHHHHHHHH---HHhcCcEEEEEecCcch
Q psy11400 232 IDVLSGGEKQRVAMA--RLFYHRPQFAILDECTSAVSVDVEGSMYEY---CREVGITLFTVSHRKSL 293 (298)
Q Consensus 232 ~~~LSgGqkQRlaiA--RaL~~~P~iliLDEPTs~LD~~~~~~i~~~---l~~~~~TiIiitH~l~~ 293 (298)
...+|+|++|||.|+ .+|...|+.. ....+.+.++ +++.|+|+|+++|+.+.
T Consensus 113 ~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 113 NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 457999999999999 6666665544 2344444443 45569999999998753
No 488
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.86 E-value=0.083 Score=58.91 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=45.1
Q ss_pred CCCCChhHHHHHHHHHHHh--------c--------CC-CEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400 232 IDVLSGGEKQRVAMARLFY--------H--------RP-QFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS 288 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~--------~--------~P-~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit 288 (298)
...||||||+.+.++..++ . -| .+|+|||+ +.+|..+...++++++..|.-+|++|
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~t 1435 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAA 1435 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEec
Confidence 4579999998887665554 1 12 44699999 99999999999999998888777776
No 489
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.16 E-value=0.11 Score=50.80 Aligned_cols=66 Identities=6% Similarity=-0.052 Sum_probs=45.9
Q ss_pred cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce---eec------------
Q psy11400 103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT---VTK------------ 163 (298)
Q Consensus 103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~---i~~------------ 163 (298)
++++++ |++.+|++++|+ |+| || |+++ + .++.+++.+. +..
T Consensus 144 ~aID~l-l~I~~GQ~igI~--------G~sGaGKSTLl~~-------I----~g~~~~dv~vig~IGerg~ev~ef~~~~ 203 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLM--------AGSGVGKSVLLGM-------I----TRYTQADVVVVGLIGERGREVKEFIEHS 203 (434)
T ss_pred eeccce-EeEecceEEEEE--------CCCCCCccHHHHH-------H----hcccCCCeEEEEEEeeecHHHHHHHHHH
Confidence 389999 999999999999 999 99 7787 5 5555544321 100
Q ss_pred -----cCCCcEEEEcCcCCCC-CCCHHHHHc
Q psy11400 164 -----PPRGKLFYVPQRPYMT-LGTLRDQVI 188 (298)
Q Consensus 164 -----~~r~~i~~v~Q~~~l~-~~tv~eni~ 188 (298)
..+..+++++|+...+ ..++.++..
T Consensus 204 l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 204 LQAAGMAKSVVVAAPADESPLMRIKATELCH 234 (434)
T ss_pred hhhcccceEEEEEecCCCChhhhHHHHHHHH
Confidence 1244699999997554 345665553
No 490
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.11 E-value=0.37 Score=48.03 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCCCChhHHHHHHHHHH---HhcCC-----CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 232 IDVLSGGEKQRVAMARL---FYHRP-----QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARa---L~~~P-----~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
+..||-|+|.-++++-= |..+| +++++|.|.|++|.......+..+++ .++-+|+-||+--.
T Consensus 527 gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF 599 (758)
T COG4694 527 GNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYF 599 (758)
T ss_pred cccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecccee
Confidence 34699999999987543 44555 57899999999999888877777665 47899999998543
No 491
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=91.49 E-value=0.37 Score=45.96 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=44.5
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCc-EEEEEec
Q psy11400 233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGI-TLFTVSH 289 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~-TiIiitH 289 (298)
.-.|-||++-+++|.-|+ .+++||+|||-+|-||..-+..+.+. .+.+. +.|..|+
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~~~Q~fvT~t~ 339 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IELGVQVFVTTTD 339 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cccCCeEEEEccC
Confidence 358999999998887665 57899999999999999999999998 44444 4444443
No 492
>PRK15494 era GTPase Era; Provisional
Probab=90.54 E-value=0.11 Score=49.17 Aligned_cols=45 Identities=13% Similarity=-0.033 Sum_probs=38.7
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCc-------EEEEeccCCcccCCCC--cc--eeec
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGAL-------NLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~-------~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.+.+++++++|.|+.... +++.++|+++.|+ .++++ |.. || |++.
T Consensus 16 ~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~k~~kV~iv--------G~~nvGKSTLin~ 71 (339)
T PRK15494 16 KGDTEALAAAVREDASTG--------STSKLPLEVKFGKMSNQKTVSVCII--------GRPNSGKSTLLNR 71 (339)
T ss_pred CCccccccccccCCCCcc--------cccCCccccccccccccceeEEEEE--------cCCCCCHHHHHHH
Confidence 467899999999984433 8999999999999 99999 998 99 6665
No 493
>PRK01889 GTPase RsgA; Reviewed
Probab=90.53 E-value=0.088 Score=50.20 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=51.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc--------CCCcEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------PRGKLFY 171 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------~r~~i~~ 171 (298)
-++.+.-.+++|++++++ |+| || |++. + .|...+..|++... ...++++
T Consensus 184 gl~~L~~~L~~g~~~~lv--------G~sgvGKStLin~-------L----~g~~~~~~G~i~~~~~~g~~tt~~~~l~~ 244 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALL--------GSSGVGKSTLVNA-------L----LGEEVQKTGAVREDDSKGRHTTTHRELHP 244 (356)
T ss_pred cHHHHHHHhhcCCEEEEE--------CCCCccHHHHHHH-------H----HHhcccceeeEEECCCCCcchhhhccEEE
Confidence 355566667899999999 999 99 8888 7 77777888887532 2357999
Q ss_pred EcCcCCCCCCCHHHHHccC
Q psy11400 172 VPQRPYMTLGTLRDQVIYP 190 (298)
Q Consensus 172 v~Q~~~l~~~tv~eni~~~ 190 (298)
++|..+++......++.+.
T Consensus 245 l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 245 LPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred ecCCCeecCCCchhhhccc
Confidence 9999888776555555543
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=90.29 E-value=0.28 Score=53.81 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH--hcCcEEEEEecCcchhhh
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR--EVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~--~~~~TiIiitH~l~~~~~ 296 (298)
++.++| |..++-+++||+... ....+.+..... ..|.+||++||+...+..
T Consensus 287 ~~~~~~------L~~krvLLVLDdv~~---~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 287 GAMEER------LKHRKVLIFIDDLDD---QDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred HHHHHH------HhCCeEEEEEeCCCC---HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 555655 446777889998532 222222222211 137899999999887654
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.10 E-value=0.19 Score=43.07 Aligned_cols=67 Identities=19% Similarity=0.102 Sum_probs=46.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------cCCCcEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------PPRGKLFY 171 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------~~r~~i~~ 171 (298)
..+=+.+.+++|+.++|+ ||+ || +++. + .++++++.|.+.. +.+..+++
T Consensus 14 ~~~~l~~~v~~g~~i~I~--------G~tGSGKTTll~a-------L----~~~i~~~~~~i~ied~~E~~~~~~~~~~~ 74 (186)
T cd01130 14 QAAYLWLAVEARKNILIS--------GGTGSGKTTLLNA-------L----LAFIPPDERIITIEDTAELQLPHPNWVRL 74 (186)
T ss_pred HHHHHHHHHhCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhcCCCCCEEEECCccccCCCCCCEEEE
Confidence 344467789999999999 999 99 8888 7 8888888887642 12344666
Q ss_pred EcCcCCC---CCCCHHHHHcc
Q psy11400 172 VPQRPYM---TLGTLRDQVIY 189 (298)
Q Consensus 172 v~Q~~~l---~~~tv~eni~~ 189 (298)
++|.+.. ...+..+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 75 VTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred EEecCCCCCCCccCHHHHHHH
Confidence 6665432 23477776643
No 496
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=89.56 E-value=0.22 Score=48.76 Aligned_cols=54 Identities=17% Similarity=-0.049 Sum_probs=40.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++.++++..+..+-. +++++ |.+.+|++++|+ |+| || |+++ + .+...
T Consensus 129 ~~~r~~v~~~l~tGi~--------aID~l-l~i~~GqrigI~--------G~sG~GKSTLL~~-------I----~~~~~ 180 (433)
T PRK07594 129 AMVRQPITQPLMTGIR--------AIDSV-ATCGEGQRVGIF--------SAPGVGKSTLLAM-------L----CNAPD 180 (433)
T ss_pred ceeccCHhheeCCCce--------eeeee-eecCCCCEEEEE--------CCCCCCccHHHHH-------h----cCCCC
Confidence 4566666666654433 89999 999999999999 999 99 7777 6 66655
Q ss_pred cCCcee
Q psy11400 156 LFGGTV 161 (298)
Q Consensus 156 ~~~G~i 161 (298)
++.|.+
T Consensus 181 ~d~~vi 186 (433)
T PRK07594 181 ADSNVL 186 (433)
T ss_pred CCEEEE
Confidence 555543
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=89.32 E-value=2 Score=38.43 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=32.3
Q ss_pred hcCCCEEEEeccccCCCHHHH----HHHHHHHHh-cCcEEEEEecCcchhh
Q psy11400 250 YHRPQFAILDECTSAVSVDVE----GSMYEYCRE-VGITLFTVSHRKSLWT 295 (298)
Q Consensus 250 ~~~P~iliLDEPTs~LD~~~~----~~i~~~l~~-~~~TiIiitH~l~~~~ 295 (298)
..+..++|+||...|=++..- ..+.+.+.+ .+..+|++||..++.+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 356779999999999987533 345566665 5889999999998754
No 498
>PRK11098 microcin B17 transporter; Reviewed
Probab=88.72 E-value=1.5 Score=42.55 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLN 52 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 52 (298)
.+.++.....+.++.++++++++.+.+++++.+..+|+.++.+.+++.+
T Consensus 352 lG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l~~~~ 400 (409)
T PRK11098 352 LGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAALDGEP 400 (409)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4678888999999999999999999999999999999999999987654
No 499
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.46 E-value=2.5 Score=38.03 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=31.9
Q ss_pred HHHHHHHHHh--cCCCEEEEeccccCCCHH--------HHHH----HHHHHHhcCcEEEEEecC
Q psy11400 241 QRVAMARLFY--HRPQFAILDECTSAVSVD--------VEGS----MYEYCREVGITLFTVSHR 290 (298)
Q Consensus 241 QRlaiARaL~--~~P~iliLDEPTs~LD~~--------~~~~----i~~~l~~~~~TiIiitH~ 290 (298)
.-+..++.++ .+|+++|+|..+.-.+.. .... +.++.++.++|+++++|-
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 4445555554 479999999987754321 1123 333345679999999984
No 500
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.67 E-value=2 Score=41.31 Aligned_cols=23 Identities=13% Similarity=-0.102 Sum_probs=21.3
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK 134 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK 134 (298)
++++.++.+++|++++++ ||+ ||
T Consensus 126 ~~~~~~~~~~~g~ii~lv--------GptGvGK 150 (374)
T PRK14722 126 VLDSEDALMERGGVFALM--------GPTGVGK 150 (374)
T ss_pred hhcCCCccccCCcEEEEE--------CCCCCCH
Confidence 677888899999999999 999 99
Done!