Query psy11400
Match_columns 298
No_of_seqs 453 out of 2831
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:30:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.6E-45 5.4E-50 396.3 20.4 236 18-298 1028-1283(1321)
2 3nh6_A ATP-binding cassette SU 100.0 3.9E-45 1.3E-49 337.9 16.9 221 29-297 16-255 (306)
3 4f4c_A Multidrug resistance pr 100.0 1E-44 3.5E-49 390.0 22.3 249 4-298 352-620 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 6.1E-44 2.1E-48 356.6 25.0 247 4-297 279-544 (587)
5 4a82_A Cystic fibrosis transme 100.0 4.7E-44 1.6E-48 356.9 23.9 247 4-297 277-542 (578)
6 3b5x_A Lipid A export ATP-bind 100.0 2.4E-43 8.2E-48 352.0 25.1 246 4-297 281-545 (582)
7 3b60_A Lipid A export ATP-bind 100.0 2.6E-43 8.9E-48 351.7 24.7 245 4-297 281-545 (582)
8 3qf4_B Uncharacterized ABC tra 100.0 4.6E-44 1.6E-48 358.2 15.5 244 6-298 295-557 (598)
9 2yl4_A ATP-binding cassette SU 100.0 1.4E-42 4.6E-47 347.4 24.2 250 4-297 278-548 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 6.7E-41 2.3E-45 359.6 21.0 244 8-297 328-591 (1284)
11 2ff7_A Alpha-hemolysin translo 100.0 1.8E-40 6.3E-45 298.1 19.1 183 80-296 7-209 (247)
12 1mv5_A LMRA, multidrug resista 100.0 1.8E-40 6.2E-45 297.3 14.1 184 80-296 1-203 (243)
13 3g5u_A MCG1178, multidrug resi 100.0 9.5E-40 3.2E-44 350.7 17.9 243 11-297 974-1236(1284)
14 3tif_A Uncharacterized ABC tra 100.0 4.2E-40 1.4E-44 293.7 12.2 182 80-296 1-211 (235)
15 2ixe_A Antigen peptide transpo 100.0 3.8E-39 1.3E-43 293.3 18.0 186 79-296 15-222 (271)
16 2ghi_A Transport protein; mult 100.0 6.7E-39 2.3E-43 290.0 19.3 185 78-296 15-219 (260)
17 3gfo_A Cobalt import ATP-bindi 100.0 1E-39 3.6E-44 297.5 13.8 180 80-296 7-209 (275)
18 2pze_A Cystic fibrosis transme 100.0 1.1E-38 3.6E-43 283.5 18.7 181 80-296 6-195 (229)
19 3tui_C Methionine import ATP-b 100.0 2.1E-39 7E-44 305.5 12.8 185 78-296 22-229 (366)
20 2cbz_A Multidrug resistance-as 100.0 1.6E-38 5.6E-43 283.7 17.6 181 80-296 3-194 (237)
21 2nq2_C Hypothetical ABC transp 100.0 8.2E-39 2.8E-43 288.4 15.4 178 80-295 4-193 (253)
22 2yz2_A Putative ABC transporte 100.0 2.5E-38 8.4E-43 287.1 18.1 180 80-296 2-203 (266)
23 2pcj_A ABC transporter, lipopr 100.0 3.8E-39 1.3E-43 285.5 11.6 179 80-296 4-205 (224)
24 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-38 6E-43 298.8 14.5 178 80-295 4-203 (359)
25 1sgw_A Putative ABC transporte 100.0 1.7E-38 5.7E-43 279.6 13.1 176 79-296 9-198 (214)
26 1g6h_A High-affinity branched- 100.0 1.2E-38 4E-43 287.8 12.3 179 80-295 7-217 (257)
27 2olj_A Amino acid ABC transpor 100.0 1.1E-38 3.7E-43 289.1 11.9 178 80-295 24-223 (263)
28 1ji0_A ABC transporter; ATP bi 100.0 3.1E-38 1.1E-42 282.3 14.1 177 80-295 6-203 (240)
29 1b0u_A Histidine permease; ABC 100.0 2E-38 6.9E-43 287.2 11.9 178 80-295 6-217 (262)
30 1vpl_A ABC transporter, ATP-bi 100.0 9E-38 3.1E-42 282.0 16.1 180 79-296 14-211 (256)
31 3rlf_A Maltose/maltodextrin im 100.0 2.3E-38 7.7E-43 300.0 12.6 178 80-295 3-198 (381)
32 3gd7_A Fusion complex of cysti 100.0 9.8E-38 3.4E-42 297.0 16.6 184 78-296 17-219 (390)
33 4g1u_C Hemin import ATP-bindin 100.0 7.7E-38 2.6E-42 284.0 15.0 178 79-296 10-213 (266)
34 1z47_A CYSA, putative ABC-tran 100.0 5.1E-38 1.7E-42 295.5 13.5 180 79-295 13-210 (355)
35 2yyz_A Sugar ABC transporter, 100.0 1.6E-37 5.4E-42 292.6 14.8 178 80-295 3-198 (359)
36 2onk_A Molybdate/tungstate ABC 100.0 1.4E-37 4.6E-42 278.3 13.6 173 80-295 1-191 (240)
37 2it1_A 362AA long hypothetical 100.0 1.3E-37 4.5E-42 293.5 12.6 178 80-295 3-198 (362)
38 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-37 5.1E-42 292.5 12.1 180 80-295 3-205 (353)
39 1v43_A Sugar-binding transport 100.0 2.5E-37 8.4E-42 292.6 13.2 178 80-295 11-206 (372)
40 2ihy_A ABC transporter, ATP-bi 100.0 6.5E-37 2.2E-41 279.7 14.7 180 79-295 20-227 (279)
41 1g29_1 MALK, maltose transport 100.0 2.7E-37 9.4E-42 292.5 12.6 178 80-295 3-204 (372)
42 3d31_A Sulfate/molybdate ABC t 100.0 3E-37 1E-41 289.8 12.8 174 80-295 1-192 (348)
43 2pjz_A Hypothetical protein ST 100.0 8.4E-37 2.9E-41 276.7 15.1 172 80-295 1-189 (263)
44 2qi9_C Vitamin B12 import ATP- 100.0 1.9E-36 6.6E-41 272.3 15.5 168 80-295 4-197 (249)
45 2d2e_A SUFC protein; ABC-ATPas 100.0 4.1E-37 1.4E-41 276.7 10.6 180 80-296 3-208 (250)
46 2zu0_C Probable ATP-dependent 100.0 3.9E-36 1.3E-40 272.8 12.8 182 78-296 18-229 (267)
47 2bbs_A Cystic fibrosis transme 100.0 1.5E-35 5E-40 272.1 15.7 177 79-296 39-224 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 4.6E-31 1.6E-35 264.1 13.5 172 80-296 357-537 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.3E-31 1.8E-35 260.5 12.7 173 79-296 286-467 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-30 3.7E-35 258.1 14.3 175 79-296 268-451 (538)
51 2iw3_A Elongation factor 3A; a 100.0 1.6E-29 5.4E-34 262.5 15.5 182 80-296 671-963 (986)
52 3bk7_A ABC transporter ATP-bin 100.0 8.5E-30 2.9E-34 254.9 12.4 166 84-296 95-293 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 1.2E-29 4.2E-34 253.6 12.2 170 84-296 350-533 (608)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-29 5.2E-34 250.2 10.1 169 81-296 21-223 (538)
55 2iw3_A Elongation factor 3A; a 99.9 6.8E-27 2.3E-31 242.8 16.2 168 80-296 435-610 (986)
56 3ux8_A Excinuclease ABC, A sub 99.9 2.5E-27 8.5E-32 239.9 8.4 173 104-296 33-269 (670)
57 3j16_B RLI1P; ribosome recycli 99.9 1.1E-26 3.6E-31 232.4 9.9 167 85-296 82-286 (608)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.4E-26 4.9E-31 228.7 8.0 154 105-296 14-202 (538)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.4E-24 8.1E-29 218.1 12.2 100 181-296 505-611 (670)
60 3pih_A Uvrabc system protein A 99.9 5E-23 1.7E-27 213.3 13.0 86 204-297 783-874 (916)
61 2vf7_A UVRA2, excinuclease ABC 99.9 3.8E-22 1.3E-26 205.2 14.2 84 204-296 708-798 (842)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.9E-25 2.4E-29 212.8 -8.9 152 106-292 129-299 (460)
63 2r6f_A Excinuclease ABC subuni 99.9 4.5E-22 1.5E-26 205.6 11.4 83 205-296 824-913 (972)
64 2v9p_A Replication protein E1; 99.9 1.9E-25 6.4E-30 205.9 -14.1 185 18-296 55-244 (305)
65 2ygr_A Uvrabc system protein A 99.9 8.7E-22 3E-26 204.1 11.1 82 206-296 843-931 (993)
66 3b85_A Phosphate starvation-in 99.9 4.8E-24 1.6E-28 186.5 -5.4 133 104-295 15-162 (208)
67 4aby_A DNA repair protein RECN 99.8 4.9E-21 1.7E-25 182.4 11.7 62 235-296 296-361 (415)
68 4gp7_A Metallophosphoesterase; 99.8 2.4E-22 8.1E-27 169.9 -0.3 66 231-296 80-164 (171)
69 1e69_A Chromosome segregation 99.7 1.9E-18 6.5E-23 160.1 8.9 66 231-296 216-287 (322)
70 1tq4_A IIGP1, interferon-induc 99.7 2.3E-21 8E-26 185.4 -11.1 150 104-293 38-237 (413)
71 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 9.2E-18 3.2E-22 139.0 9.5 65 231-295 54-127 (148)
72 1ye8_A Protein THEP1, hypothet 99.7 1.8E-18 6.2E-23 147.4 2.0 64 231-294 73-146 (178)
73 3aez_A Pantothenate kinase; tr 99.7 4.9E-20 1.7E-24 170.5 -11.3 162 78-293 41-230 (312)
74 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.6E-16 5.5E-21 149.8 8.5 66 231-296 276-350 (365)
75 1z6g_A Guanylate kinase; struc 99.6 1.1E-19 3.7E-24 159.4 -14.0 154 104-294 12-197 (218)
76 3pih_A Uvrabc system protein A 99.6 3.3E-16 1.1E-20 162.4 8.6 81 207-296 445-531 (916)
77 3kta_B Chromosome segregation 99.6 6.7E-16 2.3E-20 131.0 8.9 67 231-297 61-133 (173)
78 3b9q_A Chloroplast SRP recepto 99.6 7.5E-18 2.6E-22 155.1 -3.5 142 105-290 90-256 (302)
79 1ewq_A DNA mismatch repair pro 99.6 1.4E-15 4.8E-20 155.5 10.0 141 78-295 548-702 (765)
80 2pt7_A CAG-ALFA; ATPase, prote 99.6 8E-17 2.7E-21 150.0 -0.1 116 104-295 160-279 (330)
81 2o8b_B DNA mismatch repair pro 99.6 1E-15 3.5E-20 160.8 8.0 147 79-296 749-917 (1022)
82 2ygr_A Uvrabc system protein A 99.6 1.8E-15 6.1E-20 157.1 9.5 79 209-296 504-588 (993)
83 2r6f_A Excinuclease ABC subuni 99.6 1.3E-15 4.3E-20 157.7 8.3 79 209-296 487-571 (972)
84 3sop_A Neuronal-specific septi 99.6 3.2E-17 1.1E-21 148.6 -3.2 137 117-294 4-153 (270)
85 2og2_A Putative signal recogni 99.6 5.9E-17 2E-21 152.3 -2.4 141 106-290 148-313 (359)
86 2vf7_A UVRA2, excinuclease ABC 99.6 2.7E-15 9.2E-20 154.4 8.8 66 231-296 376-446 (842)
87 3qkt_A DNA double-strand break 99.5 2.1E-14 7.1E-19 133.8 9.1 66 231-296 245-319 (339)
88 4ad8_A DNA repair protein RECN 99.5 1.4E-14 4.8E-19 142.3 7.3 65 232-296 394-463 (517)
89 1znw_A Guanylate kinase, GMP k 99.5 1.5E-17 5.3E-22 144.1 -12.4 151 104-295 11-192 (207)
90 1tf7_A KAIC; homohexamer, hexa 99.5 4E-14 1.4E-18 139.3 7.9 131 109-291 275-417 (525)
91 2dpy_A FLII, flagellum-specifi 99.5 7.5E-16 2.6E-20 148.5 -5.3 152 79-292 130-318 (438)
92 2jeo_A Uridine-cytidine kinase 99.5 3.9E-15 1.3E-19 132.2 -1.4 146 104-291 14-165 (245)
93 3thx_B DNA mismatch repair pro 99.4 3.7E-13 1.3E-17 139.7 12.3 63 232-295 733-800 (918)
94 3asz_A Uridine kinase; cytidin 99.4 4.7E-16 1.6E-20 134.3 -11.9 137 112-291 3-161 (211)
95 3auy_A DNA double-strand break 99.4 1.2E-12 3.9E-17 123.4 9.5 64 232-295 278-350 (371)
96 2o5v_A DNA replication and rep 99.4 7.3E-13 2.5E-17 124.5 7.7 59 232-290 262-330 (359)
97 1w1w_A Structural maintenance 99.4 8.1E-13 2.8E-17 126.7 8.1 64 233-296 332-402 (430)
98 2eyu_A Twitching motility prot 99.3 4.3E-13 1.5E-17 120.8 3.8 117 104-295 16-137 (261)
99 3thx_A DNA mismatch repair pro 99.3 3.3E-12 1.1E-16 133.0 10.7 64 233-296 720-790 (934)
100 2obl_A ESCN; ATPase, hydrolase 99.3 4.3E-13 1.5E-17 125.6 0.5 151 79-292 44-229 (347)
101 2qnr_A Septin-2, protein NEDD5 99.3 4.8E-14 1.6E-18 129.4 -5.9 152 84-292 2-168 (301)
102 1tf7_A KAIC; homohexamer, hexa 99.2 2.1E-14 7.1E-19 141.3 -10.8 139 104-294 27-188 (525)
103 1pui_A ENGB, probable GTP-bind 99.2 6E-14 2E-18 120.3 -6.8 160 80-279 3-195 (210)
104 1cr0_A DNA primase/helicase; R 99.2 4.5E-13 1.5E-17 121.8 -1.6 152 104-291 24-197 (296)
105 1nlf_A Regulatory protein REPA 99.2 2.3E-11 8E-16 109.7 8.7 142 111-294 26-184 (279)
106 2qag_C Septin-7; cell cycle, c 99.2 2.3E-13 7.8E-18 130.4 -5.2 155 79-294 10-180 (418)
107 4a74_A DNA repair and recombin 99.2 1.7E-12 5.7E-17 112.6 0.1 58 235-292 100-181 (231)
108 1wb9_A DNA mismatch repair pro 99.2 4.9E-11 1.7E-15 122.6 10.1 62 233-295 668-734 (800)
109 3jvv_A Twitching mobility prot 99.1 2.6E-11 8.9E-16 113.8 5.5 48 244-295 188-235 (356)
110 1rj9_A FTSY, signal recognitio 99.1 1.6E-11 5.6E-16 112.8 3.8 136 114-294 101-261 (304)
111 1pzn_A RAD51, DNA repair and r 99.1 3.9E-12 1.4E-16 119.0 -0.8 130 104-293 119-288 (349)
112 2i3b_A HCR-ntpase, human cance 99.0 4.1E-12 1.4E-16 109.0 -4.1 126 115-291 1-149 (189)
113 2ehv_A Hypothetical protein PH 99.0 2.9E-10 1E-14 99.6 6.5 59 236-294 119-185 (251)
114 2w0m_A SSO2452; RECA, SSPF, un 99.0 8.5E-10 2.9E-14 95.2 8.9 58 234-291 103-168 (235)
115 3szr_A Interferon-induced GTP- 99.0 1.6E-12 5.5E-17 130.1 -10.1 149 80-294 10-199 (608)
116 2cvh_A DNA repair and recombin 98.8 1E-08 3.5E-13 88.0 9.5 59 234-292 84-157 (220)
117 1odf_A YGR205W, hypothetical 3 98.8 3.3E-11 1.1E-15 110.0 -6.8 122 113-268 29-168 (290)
118 1lw7_A Transcriptional regulat 98.8 7.9E-12 2.7E-16 117.3 -12.6 68 104-190 157-247 (365)
119 2ewv_A Twitching motility prot 98.8 2E-09 6.8E-14 101.5 3.4 109 104-294 127-247 (372)
120 2gza_A Type IV secretion syste 98.6 1.8E-09 6.3E-14 101.3 -1.8 128 82-294 137-290 (361)
121 1s96_A Guanylate kinase, GMP k 98.6 1.1E-09 3.7E-14 95.9 -3.6 119 107-295 8-144 (219)
122 2f1r_A Molybdopterin-guanine d 98.6 2.2E-10 7.4E-15 96.7 -9.2 96 116-256 3-125 (171)
123 2qag_B Septin-6, protein NEDD5 98.5 7.9E-09 2.7E-13 98.9 -0.3 174 80-290 16-218 (427)
124 2rcn_A Probable GTPase ENGC; Y 98.5 2.1E-09 7.1E-14 100.8 -5.4 107 104-250 205-329 (358)
125 1udx_A The GTP-binding protein 98.5 2.4E-08 8.3E-13 95.4 0.7 153 105-289 147-306 (416)
126 1zp6_A Hypothetical protein AT 98.4 5.5E-10 1.9E-14 94.3 -10.1 129 111-279 5-146 (191)
127 2yhs_A FTSY, cell division pro 98.4 1.6E-08 5.5E-13 98.3 -1.6 141 105-289 283-447 (503)
128 2bbw_A Adenylate kinase 4, AK4 98.4 1.4E-09 4.9E-14 96.0 -10.0 138 114-277 26-193 (246)
129 3ec2_A DNA replication protein 98.3 4.5E-08 1.6E-12 81.9 -0.4 43 250-292 98-144 (180)
130 1sxj_E Activator 1 40 kDa subu 98.3 1.6E-07 5.4E-12 86.6 3.0 44 249-293 131-176 (354)
131 3c8u_A Fructokinase; YP_612366 98.3 1.9E-09 6.3E-14 93.0 -9.6 116 112-262 19-140 (208)
132 2qm8_A GTPase/ATPase; G protei 98.3 2.3E-10 8E-15 106.5 -16.6 72 80-179 29-119 (337)
133 2kjq_A DNAA-related protein; s 98.2 2.9E-06 9.9E-11 69.4 6.5 41 249-290 80-124 (149)
134 1n0w_A DNA repair protein RAD5 98.2 8.1E-06 2.8E-10 70.7 9.6 60 234-293 98-176 (243)
135 3e70_C DPA, signal recognition 98.2 4E-07 1.4E-11 84.3 1.2 132 111-291 125-279 (328)
136 1p9r_A General secretion pathw 98.1 2E-09 6.9E-14 103.0 -15.5 120 104-257 158-314 (418)
137 1nij_A Hypothetical protein YJ 98.1 8E-09 2.7E-13 95.2 -11.3 47 234-291 141-189 (318)
138 1lvg_A Guanylate kinase, GMP k 98.1 2.3E-09 7.7E-14 92.0 -14.9 34 245-278 116-150 (198)
139 3lda_A DNA repair protein RAD5 98.0 2.2E-05 7.6E-10 74.5 10.6 41 251-291 272-328 (400)
140 2yv5_A YJEQ protein; hydrolase 98.0 1.8E-07 6.1E-12 85.6 -4.6 108 110-247 160-300 (302)
141 1htw_A HI0065; nucleotide-bind 97.9 5.5E-07 1.9E-11 74.7 -2.3 78 83-189 10-97 (158)
142 2oap_1 GSPE-2, type II secreti 97.8 1.5E-08 5.1E-13 99.3 -15.5 161 104-295 249-454 (511)
143 1ls1_A Signal recognition part 97.8 4.1E-05 1.4E-09 69.6 8.3 136 81-288 77-219 (295)
144 1vma_A Cell division protein F 97.8 6.5E-06 2.2E-10 75.4 2.6 94 108-263 97-197 (306)
145 1u0l_A Probable GTPase ENGC; p 97.4 6.6E-06 2.3E-10 74.9 -3.2 88 110-221 164-287 (301)
146 1in4_A RUVB, holliday junction 97.4 1.3E-07 4.3E-12 87.5 -15.3 79 81-188 19-123 (334)
147 2px0_A Flagellar biosynthesis 97.4 0.00028 9.5E-09 64.1 6.8 116 113-294 103-229 (296)
148 2x8a_A Nuclear valosin-contain 97.3 1.7E-07 5.6E-12 84.6 -14.8 128 104-278 35-191 (274)
149 2bdt_A BH3686; alpha-beta prot 97.3 2.4E-07 8.3E-12 77.9 -13.3 55 236-294 96-160 (189)
150 3k1j_A LON protease, ATP-depen 97.1 5.8E-05 2E-09 75.2 -0.3 145 104-279 49-227 (604)
151 1t9h_A YLOQ, probable GTPase E 97.1 3.8E-05 1.3E-09 70.3 -1.5 104 110-242 168-303 (307)
152 1sq5_A Pantothenate kinase; P- 97.1 2.8E-06 9.5E-11 77.6 -9.4 55 78-162 35-114 (308)
153 2r6a_A DNAB helicase, replicat 97.0 0.00092 3.2E-08 64.1 6.8 56 232-289 293-362 (454)
154 2ius_A DNA translocase FTSK; n 96.8 3.8E-05 1.3E-09 75.0 -5.4 59 234-292 268-343 (512)
155 2dr3_A UPF0273 protein PH0284; 96.6 0.014 5E-07 49.9 10.7 53 241-293 115-175 (247)
156 3euj_A Chromosome partition pr 96.3 0.00086 2.9E-08 65.0 1.0 58 232-290 377-451 (483)
157 3euj_A Chromosome partition pr 96.3 0.0079 2.7E-07 58.2 7.5 39 104-162 19-61 (483)
158 4a1f_A DNAB helicase, replicat 96.2 0.0065 2.2E-07 56.2 6.1 55 234-289 109-164 (338)
159 3tr0_A Guanylate kinase, GMP k 95.7 0.0002 6.7E-09 60.3 -5.9 115 109-261 1-127 (205)
160 1iy2_A ATP-dependent metallopr 95.7 2E-06 6.9E-11 77.0 -19.6 29 233-263 168-196 (278)
161 2eyu_A Twitching motility prot 95.2 2.5E-05 8.7E-10 69.7 -14.0 67 225-293 162-242 (261)
162 3nwj_A ATSK2; P loop, shikimat 95.1 0.00075 2.6E-08 59.8 -4.6 44 79-138 16-67 (250)
163 3lnc_A Guanylate kinase, GMP k 95.0 0.005 1.7E-07 53.0 0.5 27 104-138 16-46 (231)
164 2zr9_A Protein RECA, recombina 94.8 0.055 1.9E-06 50.0 7.2 52 241-292 126-199 (349)
165 2xau_A PRE-mRNA-splicing facto 94.7 0.014 4.6E-07 59.8 3.0 63 232-294 188-255 (773)
166 3hr8_A Protein RECA; alpha and 94.7 0.0023 7.7E-08 59.7 -2.6 20 111-138 57-80 (356)
167 2ce7_A Cell division protein F 94.7 0.046 1.6E-06 52.8 6.4 58 237-294 93-167 (476)
168 1lw7_A Transcriptional regulat 94.2 0.018 6.3E-07 53.2 2.3 30 233-262 295-329 (365)
169 2ewv_A Twitching motility prot 94.1 6.5E-05 2.2E-09 70.5 -14.6 68 224-293 272-353 (372)
170 2dy1_A Elongation factor G; tr 94.1 0.0058 2E-07 61.5 -1.3 43 250-294 97-139 (665)
171 1fnn_A CDC6P, cell division co 93.4 0.6 2.1E-05 42.3 11.0 42 251-293 124-171 (389)
172 3ice_A Transcription terminati 93.3 0.01 3.5E-07 56.0 -1.2 44 79-138 132-193 (422)
173 1ni3_A YCHF GTPase, YCHF GTP-b 93.1 0.00097 3.3E-08 63.0 -8.5 40 252-293 139-184 (392)
174 3t34_A Dynamin-related protein 92.7 0.32 1.1E-05 44.6 8.1 56 234-289 154-212 (360)
175 1v5w_A DMC1, meiotic recombina 92.3 0.51 1.8E-05 43.1 8.9 52 241-292 204-275 (343)
176 2z43_A DNA repair and recombin 92.0 0.43 1.5E-05 43.1 8.0 52 240-291 188-258 (324)
177 1qhl_A Protein (cell division 91.7 0.0053 1.8E-07 53.5 -5.0 47 109-175 22-91 (227)
178 2e87_A Hypothetical protein PH 91.7 0.24 8.2E-06 45.5 5.9 60 232-292 229-293 (357)
179 3kta_A Chromosome segregation 91.0 0.06 2.1E-06 44.0 1.0 24 106-138 18-45 (182)
180 2j41_A Guanylate kinase; GMP, 89.8 0.034 1.2E-06 46.2 -1.6 21 110-138 1-25 (207)
181 1oix_A RAS-related protein RAB 89.1 0.17 6E-06 41.6 2.3 37 241-279 152-188 (191)
182 3vaa_A Shikimate kinase, SK; s 88.1 0.18 6.2E-06 42.0 1.8 27 104-138 14-44 (199)
183 3tqc_A Pantothenate kinase; bi 87.1 0.01 3.5E-07 54.5 -7.2 126 104-267 75-211 (321)
184 2qtf_A Protein HFLX, GTP-bindi 86.9 0.37 1.3E-05 44.6 3.3 45 231-279 301-350 (364)
185 3b9p_A CG5977-PA, isoform A; A 85.0 2.5 8.6E-05 36.9 7.7 57 236-292 97-170 (297)
186 3bh0_A DNAB-like replicative h 84.3 0.79 2.7E-05 41.3 4.1 54 235-289 134-189 (315)
187 2f9l_A RAB11B, member RAS onco 81.2 0.71 2.4E-05 37.9 2.3 33 243-277 130-162 (199)
188 2z4s_A Chromosomal replication 80.8 2.3 7.8E-05 40.1 6.0 41 251-291 193-237 (440)
189 2ffh_A Protein (FFH); SRP54, s 80.0 1.6 5.3E-05 41.4 4.5 50 237-289 197-246 (425)
190 1g5t_A COB(I)alamin adenosyltr 79.2 1.6 5.5E-05 36.9 3.9 52 240-291 106-163 (196)
191 4e22_A Cytidylate kinase; P-lo 78.7 0.19 6.6E-06 43.7 -2.2 31 113-162 25-62 (252)
192 1zu4_A FTSY; GTPase, signal re 78.2 0.28 9.7E-06 44.6 -1.3 38 105-161 95-136 (320)
193 3kl4_A SRP54, signal recogniti 78.1 3.9 0.00013 38.7 6.6 17 114-138 96-116 (433)
194 1u94_A RECA protein, recombina 76.1 6.9 0.00024 35.9 7.6 51 241-291 128-200 (356)
195 2qby_A CDC6 homolog 1, cell di 73.6 2.8 9.6E-05 37.5 4.2 43 252-294 128-176 (386)
196 2qt1_A Nicotinamide riboside k 73.3 0.7 2.4E-05 38.3 0.0 40 111-181 17-60 (207)
197 3a00_A Guanylate kinase, GMP k 73.1 0.66 2.3E-05 38.0 -0.2 23 115-156 1-27 (186)
198 2o5v_A DNA replication and rep 70.3 0.92 3.1E-05 41.9 0.1 26 104-138 16-45 (359)
199 3uie_A Adenylyl-sulfate kinase 69.7 0.26 8.9E-06 41.0 -3.5 38 104-161 14-55 (200)
200 1svm_A Large T antigen; AAA+ f 69.3 0.36 1.2E-05 45.0 -2.9 132 104-263 158-312 (377)
201 1kgd_A CASK, peripheral plasma 68.0 0.85 2.9E-05 37.2 -0.6 18 113-138 3-24 (180)
202 1njg_A DNA polymerase III subu 67.4 7.7 0.00026 31.6 5.3 41 251-292 125-167 (250)
203 1ega_A Protein (GTP-binding pr 64.1 3.2 0.00011 36.9 2.4 50 235-291 101-159 (301)
204 2b8t_A Thymidine kinase; deoxy 62.6 10 0.00034 32.4 5.2 40 252-293 89-128 (223)
205 1jcn_A Inosine monophosphate d 61.3 0.17 5.9E-06 49.0 -7.1 45 247-294 28-73 (514)
206 3ney_A 55 kDa erythrocyte memb 58.4 2.1 7.2E-05 36.1 0.0 21 110-138 14-38 (197)
207 1rz3_A Hypothetical protein rb 55.3 1.8 6.1E-05 35.9 -0.9 32 111-161 18-53 (201)
208 3tau_A Guanylate kinase, GMP k 55.2 2.6 8.9E-05 35.1 0.1 18 113-138 6-27 (208)
209 2p67_A LAO/AO transport system 54.1 0.91 3.1E-05 41.3 -3.2 39 104-161 45-87 (341)
210 3szr_A Interferon-induced GTP- 53.9 9.8 0.00033 37.4 4.0 53 237-289 168-223 (608)
211 3h4m_A Proteasome-activating n 53.9 13 0.00046 31.8 4.6 50 244-293 102-168 (285)
212 2orv_A Thymidine kinase; TP4A 53.7 21 0.00071 30.8 5.6 39 251-292 89-127 (234)
213 1xp8_A RECA protein, recombina 53.6 33 0.0011 31.4 7.4 50 241-290 139-210 (366)
214 3qf7_A RAD50; ABC-ATPase, ATPa 53.2 3.8 0.00013 37.6 0.8 26 104-138 13-42 (365)
215 4ag6_A VIRB4 ATPase, type IV s 52.8 17 0.00057 33.2 5.3 44 251-294 261-310 (392)
216 1ixz_A ATP-dependent metallopr 48.7 1.3 4.6E-05 37.9 -2.8 28 234-263 145-172 (254)
217 3m6a_A ATP-dependent protease 47.2 1.9 6.5E-05 41.9 -2.3 26 104-138 98-127 (543)
218 2q6t_A DNAB replication FORK h 47.1 27 0.00094 32.5 5.9 54 234-289 292-361 (444)
219 1l8q_A Chromosomal replication 47.1 25 0.00085 30.9 5.3 42 250-291 96-141 (324)
220 1sxj_D Activator 1 41 kDa subu 45.5 23 0.00078 31.2 4.8 40 252-292 133-174 (353)
221 2vp4_A Deoxynucleoside kinase; 45.4 6.6 0.00023 33.1 1.1 22 109-138 14-39 (230)
222 1w1w_A Structural maintenance 44.3 5.2 0.00018 37.3 0.3 21 110-138 21-45 (430)
223 4eun_A Thermoresistant glucoki 44.1 4.4 0.00015 33.3 -0.2 27 104-138 18-48 (200)
224 3lxx_A GTPase IMAP family memb 42.7 39 0.0013 28.1 5.6 40 250-289 110-154 (239)
225 4dcu_A GTP-binding protein ENG 40.4 30 0.001 32.3 5.0 58 236-294 86-144 (456)
226 3cr8_A Sulfate adenylyltranfer 39.6 4.1 0.00014 39.8 -1.2 32 111-161 365-401 (552)
227 2w58_A DNAI, primosome compone 38.7 12 0.00039 30.4 1.6 11 251-261 114-124 (202)
228 1xx6_A Thymidine kinase; NESG, 38.4 46 0.0016 27.4 5.3 39 252-292 81-119 (191)
229 4ad8_A DNA repair protein RECN 37.8 6.1 0.00021 37.9 -0.4 26 104-138 50-79 (517)
230 4fcw_A Chaperone protein CLPB; 37.3 47 0.0016 28.5 5.5 34 245-279 111-145 (311)
231 4eaq_A DTMP kinase, thymidylat 36.4 7 0.00024 33.2 -0.2 27 104-138 12-45 (229)
232 2r8r_A Sensor protein; KDPD, P 36.3 35 0.0012 29.3 4.2 40 249-289 81-125 (228)
233 2i1q_A DNA repair and recombin 35.4 28 0.00094 30.7 3.7 50 241-290 190-258 (322)
234 1f6b_A SAR1; gtpases, N-termin 34.8 2.2 7.6E-05 34.9 -3.5 26 104-138 15-44 (198)
235 2q6t_A DNAB replication FORK h 34.2 56 0.0019 30.3 5.8 56 233-289 263-318 (444)
236 2chg_A Replication factor C sm 34.0 61 0.0021 25.6 5.4 40 251-291 101-142 (226)
237 1sfl_A 3-dehydroquinate dehydr 33.4 1.1E+02 0.0038 26.0 7.1 59 232-291 75-135 (238)
238 2orw_A Thymidine kinase; TMTK, 32.9 36 0.0012 27.5 3.7 40 251-292 75-114 (184)
239 3d8b_A Fidgetin-like protein 1 32.7 78 0.0027 28.3 6.3 20 242-261 166-185 (357)
240 3bos_A Putative DNA replicatio 32.2 57 0.0019 26.4 4.9 40 251-290 103-147 (242)
241 1b9m_A Protein (mode); DNA-bin 31.6 4.4 0.00015 35.0 -2.3 41 206-256 55-95 (265)
242 2j9r_A Thymidine kinase; TK1, 31.0 55 0.0019 27.7 4.6 40 252-293 101-140 (214)
243 3cf0_A Transitional endoplasmi 30.3 94 0.0032 26.9 6.3 50 244-293 100-166 (301)
244 1f2t_A RAD50 ABC-ATPase; DNA d 30.2 14 0.00046 29.1 0.6 24 106-138 15-42 (149)
245 1e9r_A Conjugal transfer prote 30.2 17 0.00059 33.6 1.4 43 252-294 279-321 (437)
246 1j8m_F SRP54, signal recogniti 29.5 7.4 0.00025 34.6 -1.2 35 106-160 89-128 (297)
247 1m2o_B GTP-binding protein SAR 29.2 12 0.00041 30.1 0.1 26 104-138 13-42 (190)
248 1q57_A DNA primase/helicase; d 28.3 1.3E+02 0.0043 28.3 7.2 50 240-290 340-403 (503)
249 1jr3_A DNA polymerase III subu 28.0 69 0.0023 28.2 5.0 40 252-292 119-160 (373)
250 3io5_A Recombination and repai 27.5 1.7E+02 0.006 26.4 7.5 56 237-292 92-173 (333)
251 3bgw_A DNAB-like replicative h 26.8 91 0.0031 29.1 5.8 53 235-289 263-318 (444)
252 4h3d_A 3-dehydroquinate dehydr 26.7 1.2E+02 0.004 26.2 6.2 58 232-292 91-150 (258)
253 3lxw_A GTPase IMAP family memb 25.1 54 0.0019 27.7 3.6 57 236-293 86-151 (247)
254 1jr3_D DNA polymerase III, del 24.4 90 0.0031 27.4 5.1 46 245-290 69-116 (343)
255 4b4t_J 26S protease regulatory 24.0 1.3E+02 0.0045 27.9 6.2 53 242-294 231-300 (405)
256 1jbk_A CLPB protein; beta barr 23.9 35 0.0012 26.3 2.0 42 251-292 114-162 (195)
257 1jql_B DNA polymerase III, del 23.7 86 0.0029 24.0 4.3 47 245-291 69-117 (140)
258 2qz4_A Paraplegin; AAA+, SPG7, 23.7 1.6E+02 0.0055 24.2 6.4 20 245-264 91-110 (262)
259 1jjv_A Dephospho-COA kinase; P 23.6 11 0.00038 30.7 -1.1 57 235-293 60-117 (206)
260 3llm_A ATP-dependent RNA helic 23.0 1.1E+02 0.0038 25.2 5.2 42 235-278 161-204 (235)
261 2vhj_A Ntpase P4, P4; non- hyd 22.9 1.4E+02 0.0047 27.0 5.9 47 245-292 176-237 (331)
262 2v1u_A Cell division control p 22.7 45 0.0015 29.4 2.7 41 252-292 130-178 (387)
263 4b4t_L 26S protease subunit RP 22.2 1.6E+02 0.0054 27.6 6.4 55 240-294 262-333 (437)
264 1a5t_A Delta prime, HOLB; zinc 22.0 90 0.0031 27.5 4.6 41 251-292 107-149 (334)
265 2qgz_A Helicase loader, putati 21.7 35 0.0012 30.1 1.8 41 250-290 212-257 (308)
266 1cke_A CK, MSSA, protein (cyti 21.5 8.9 0.0003 31.7 -2.2 16 115-138 5-24 (227)
267 2qp9_X Vacuolar protein sortin 21.4 2.4E+02 0.0082 25.0 7.4 50 244-293 135-199 (355)
268 4dgh_A Sulfate permease family 21.4 2.1E+02 0.007 21.1 6.0 43 251-293 47-93 (130)
269 1knq_A Gluconate kinase; ALFA/ 21.3 16 0.00053 28.8 -0.7 18 113-138 6-27 (175)
270 3hu3_A Transitional endoplasmi 21.3 1.2E+02 0.004 28.8 5.4 51 243-293 288-352 (489)
271 2www_A Methylmalonic aciduria 21.1 19 0.00064 32.6 -0.2 39 237-279 229-275 (349)
272 1kag_A SKI, shikimate kinase I 20.3 18 0.00063 28.2 -0.4 17 114-138 3-23 (173)
273 3cmw_A Protein RECA, recombina 20.0 1.9E+02 0.0066 32.1 7.3 48 243-290 450-519 (1706)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-45 Score=396.30 Aligned_cols=236 Identities=20% Similarity=0.261 Sum_probs=199.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC-CC
Q psy11400 18 AEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG-LG 96 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~-~~ 96 (298)
..+++++...+.+++....+.+|+.++++..++.+... ......+..+.|+|+||+|+||++. .+
T Consensus 1028 ~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--------------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~ 1093 (1321)
T 4f4c_A 1028 TSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS--------------LAGEKKKLYGKVIFKNVRFAYPERPEIE 1093 (1321)
T ss_dssp TSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC--------------CCSBCCCCCCCEEEEEEEECCTTSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc--------------CCCCCCCCCCeEEEEEEEEeCCCCCCCc
Confidence 44566677778888999999999999887544332110 0011122346799999999998643 23
Q ss_pred CCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc--------
Q psy11400 97 FDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-------- 164 (298)
Q Consensus 97 ~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-------- 164 (298)
+|+|+||+|++||++||| |+| || |+++ | .|+|+|++|+|..+
T Consensus 1094 -------VL~~isl~I~~Ge~vaIV--------G~SGsGKSTL~~l-------L----~rl~~p~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A 1094 -------ILKGLSFSVEPGQTLALV--------GPSGCGKSTVVAL-------L----ERFYDTLGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp -------SEEEEEEEECTTCEEEEE--------CSTTSSTTSHHHH-------H----TTSSCCSSSEEEETTEETTTBC
T ss_pred -------cccceeEEECCCCEEEEE--------CCCCChHHHHHHH-------H----hcCccCCCCEEEECCEEhhhCC
Confidence 999999999999999999 999 99 9999 8 99999999998632
Q ss_pred ---CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhH
Q psy11400 165 ---PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGE 239 (298)
Q Consensus 165 ---~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGq 239 (298)
.|++|+||||+|++|++|++|||.|+..+ ...+++++.++++.+++++++.. |+||||.++ .+.+|||||
T Consensus 1148 ~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1148 PEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp HHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred HHHHHhheEEECCCCEeeCccHHHHHhccCCC-----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence 37889999999999999999999997532 24678999999999999988765 899999876 788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|||+||||||+++|+|||||||||+||+++++.|.+.+++ .++|+|+||||+++++.+|
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD 1283 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNAD 1283 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCS
T ss_pred HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCC
Confidence 9999999999999999999999999999999999999987 4899999999999998765
No 2
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.9e-45 Score=337.94 Aligned_cols=221 Identities=21% Similarity=0.259 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCCCCCCCcccceeee
Q psy11400 29 REMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDY 108 (298)
Q Consensus 29 ~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~i 108 (298)
..+++..++.+|+.++++...+..... .........+.|+++||+|+|+.+.. +|+|+
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~--------------~~~~~~~~~~~i~~~~vs~~y~~~~~--------vL~~i 73 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLP--------------GAGPLRFQKGRIEFENVHFSYADGRE--------TLQDV 73 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCT--------------TCBCCCCSSCCEEEEEEEEESSTTCE--------EEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccc--------------cccccCCCCCeEEEEEEEEEcCCCCc--------eeeee
Confidence 456677888999999988765432110 00011112356999999999975444 99999
Q ss_pred eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCcEEEEc
Q psy11400 109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGKLFYVP 173 (298)
Q Consensus 109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~i~~v~ 173 (298)
||+|++|++++|+ ||| || |+++ + .|+++|++|+|... .|++|+|||
T Consensus 74 sl~i~~Ge~vaiv--------G~sGsGKSTLl~l-------l----~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~ 134 (306)
T 3nh6_A 74 SFTVMPGQTLALV--------GPSGAGKSTILRL-------L----FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134 (306)
T ss_dssp EEEECTTCEEEEE--------SSSCHHHHHHHHH-------H----TTSSCCSEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred eEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----HcCCCCCCcEEEECCEEcccCCHHHHhcceEEEe
Confidence 9999999999999 999 99 9999 8 99999999998632 245799999
Q ss_pred CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhc
Q psy11400 174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYH 251 (298)
Q Consensus 174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~ 251 (298)
|+|++|++||+|||.++.. ...++++.++++.+++.++++. |.|+++..+ .+.+|||||||||+|||||++
T Consensus 135 Q~~~lf~~Tv~eNi~~~~~-------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 135 QDTVLFNDTIADNIRYGRV-------TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp SSCCCCSEEHHHHHHTTST-------TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cCCccCcccHHHHHHhhcc-------cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998752 3456788999999999887765 779999876 778999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
+|++||||||||+||+.++..+.+.+++ .++|+|+||||++++...
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~a 255 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA 255 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcC
Confidence 9999999999999999999999998876 389999999999988653
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-44 Score=389.97 Aligned_cols=249 Identities=18% Similarity=0.212 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+.++...+..+..|+..+...+..+++..++..|+.++++..++.+... .........++.|+|
T Consensus 352 ~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------~~~~~~~~~~g~I~~ 418 (1321)
T 4f4c_A 352 FGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS-------------KAGRKDMKIKGDITV 418 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS-------------SCCCCCCCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc-------------cccccCCCCCCcEEE
Confidence 3566777777888899999999999999999999999999987543322110 000011123457999
Q ss_pred eeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 84 LGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 84 ~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
+||+|+||+.. .+ +|+|+||+|++|+.++|+ ||| || |+++ + .|+|+|++
T Consensus 419 ~nvsF~Y~~~~~~~-------vL~~isl~i~~G~~vaiv--------G~sGsGKSTll~l-------l----~~~~~~~~ 472 (1321)
T 4f4c_A 419 ENVHFTYPSRPDVP-------ILRGMNLRVNAGQTVALV--------GSSGCGKSTIISL-------L----LRYYDVLK 472 (1321)
T ss_dssp EEEEECCSSSTTSC-------SEEEEEEEECTTCEEEEE--------ECSSSCHHHHHHH-------H----TTSSCCSE
T ss_pred EEeeeeCCCCCCCc-------eeeceEEeecCCcEEEEE--------ecCCCcHHHHHHH-------h----cccccccc
Confidence 99999998532 33 999999999999999999 999 99 9999 8 99999999
Q ss_pred ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400 159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD 226 (298)
Q Consensus 159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d 226 (298)
|+|..+ .|++|+||+|+|++|++||+|||.|+. +..+++++.++++.++++++++. |+|++
T Consensus 473 G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~-------~~~~~~~v~~a~~~a~l~~~i~~lp~G~~ 545 (1321)
T 4f4c_A 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK-------EGITREEMVAACKMANAEKFIKTLPNGYN 545 (1321)
T ss_dssp EEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTC-------TTCCHHHHHHHHHHTTCHHHHHHSTTTTS
T ss_pred CcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhc-------ccchHHHHHHHHHHccchhHHHcCCCCCc
Confidence 998643 256899999999999999999999985 34678899999999999987765 89999
Q ss_pred cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
|.++ .+.+|||||||||+||||++++|+++|||||||+||++++..+.+.+++ .|+|+|+||||++++++.|
T Consensus 546 T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD 620 (1321)
T 4f4c_A 546 TLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNAD 620 (1321)
T ss_dssp SEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCS
T ss_pred cEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCC
Confidence 9877 8899999999999999999999999999999999999999999988876 4999999999999998754
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-44 Score=356.61 Aligned_cols=247 Identities=19% Similarity=0.222 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+.++...+..+..|+..+...+..+++..++.+|+.++++..++.... ..........+.+++
T Consensus 279 ~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--------------~~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 279 IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA--------------DNALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC--------------TTCBCCSCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--------------CCccccCCCCCcEEE
Confidence 355666677777888899999999999999999999999988743221110 000001122457999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+.+..+ +|+|+||+|++||+++|+ ||| || |+++ + .|+++|++|
T Consensus 345 ~~v~~~y~~~~~~-------~l~~isl~i~~Ge~~~iv--------G~sGsGKSTll~~-------l----~g~~~~~~G 398 (587)
T 3qf4_A 345 ENVEFRYFENTDP-------VLSGVNFSVKPGSLVAVL--------GETGSGKSTLMNL-------I----PRLIDPERG 398 (587)
T ss_dssp EEEEECSSSSSCC-------SEEEEEEEECTTCEEEEE--------CSSSSSHHHHHHT-------T----TTSSCCSEE
T ss_pred EEEEEEcCCCCCc-------ceeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCccCCCc
Confidence 9999999754433 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .|++|+||||+|++|++|++||+.++. ...+++++.++++.+++.++++. |+|+++
T Consensus 399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-------EDATDDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-------SSCCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred EEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC-------CCCCHHHHHHHHHHhCcHHHHHhcccchhh
Confidence 98642 256799999999999999999999874 23467788899999999887765 789999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++ .|+|+|+||||+++++..
T Consensus 472 ~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 544 (587)
T 3qf4_A 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLA 544 (587)
T ss_dssp EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTS
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhC
Confidence 866 7889999999999999999999999999999999999999999998875 489999999999988654
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.7e-44 Score=356.85 Aligned_cols=247 Identities=21% Similarity=0.256 Sum_probs=204.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+.++...+..+..|+..+...+..+++..++.+|+.++++..++.... ..........+.+++
T Consensus 277 ~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--------------~~~~~~~~~~~~i~~ 342 (578)
T 4a82_A 277 VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG--------------VGAQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC--------------TTCCCCCCCSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--------------CCccccCCCCCeEEE
Confidence 345666666777888899999999999999999999999987643221110 000011122457999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++..+ +|+|+||+|++||+++|+ ||| || |+++ + .|+++|++|
T Consensus 343 ~~v~~~y~~~~~~-------~l~~isl~i~~G~~~~iv--------G~sGsGKSTll~~-------l----~g~~~p~~G 396 (578)
T 4a82_A 343 DHVSFQYNDNEAP-------ILKDINLSIEKGETVAFV--------GMSGGGKSTLINL-------I----PRFYDVTSG 396 (578)
T ss_dssp EEEEECSCSSSCC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHTT-------T----TTSSCCSEE
T ss_pred EEEEEEcCCCCCc-------ceeeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCCCCCc
Confidence 9999999764433 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .|++|+||||+|++|++|++||+.++. ...+++++.++++.+++.++++. |+|+++
T Consensus 397 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t 469 (578)
T 4a82_A 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-------PTATDEEVVEAAKMANAHDFIMNLPQGYDT 469 (578)
T ss_dssp EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-------SSCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred EEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhCcchhhh
Confidence 98642 245799999999999999999999864 23457789999999999887765 789999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
..+ .+.+||||||||++|||||+++|+++|||||||+||+.++..+.+.+++ .++|+|+||||++.++..
T Consensus 470 ~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 542 (578)
T 4a82_A 470 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA 542 (578)
T ss_dssp BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTC
T ss_pred hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence 876 7889999999999999999999999999999999999999999988865 489999999999988754
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.4e-43 Score=352.01 Aligned_cols=246 Identities=18% Similarity=0.202 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++.+.. . .......+.+++
T Consensus 281 ~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--------------~--~~~~~~~~~i~~ 344 (582)
T 3b5x_A 281 PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--------------K--YEAERVNGEVDV 344 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--------------C--CCCCCCCCeEEE
Confidence 456777777888899999999999999999999999999988643221100 0 000112356999
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+||+|+|+++..+ +|+|+||++++||+++|+ ||| || |+++ + .|+++|++|
T Consensus 345 ~~v~~~y~~~~~~-------~l~~i~l~i~~G~~~~iv--------G~sGsGKSTll~~-------l----~g~~~p~~G 398 (582)
T 3b5x_A 345 KDVTFTYQGKEKP-------ALSHVSFSIPQGKTVALV--------GRSGSGKSTIANL-------F----TRFYDVDSG 398 (582)
T ss_pred EEEEEEcCCCCcc-------ccccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCC
Confidence 9999999753222 999999999999999999 999 99 9999 8 999999999
Q ss_pred eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400 160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT 227 (298)
Q Consensus 160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~ 227 (298)
+|... .+++|+||||+|.+|++|++||+.++.. ...+++++.++++.+++++++++ |+|+++
T Consensus 399 ~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE------GEYTREQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred EEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC------CCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 98532 2568999999999999999999998641 13456789999999999988876 789999
Q ss_pred ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++ .|+|+|+||||++.++..
T Consensus 473 ~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 545 (582)
T 3b5x_A 473 VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545 (582)
T ss_pred hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 876 7789999999999999999999999999999999999999999998876 389999999999987654
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.6e-43 Score=351.75 Aligned_cols=245 Identities=17% Similarity=0.205 Sum_probs=205.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR 83 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 83 (298)
++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++... .........+.+++
T Consensus 281 ~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~----------------~~~~~~~~~~~i~~ 344 (582)
T 3b60_A 281 AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE----------------GKRVIDRATGDLEF 344 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC----------------CCBCCSCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC----------------CCCCCCCCCCcEEE
Confidence 45677778888899999999999999999999999999998864221110 00000112357999
Q ss_pred eeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 84 LGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 84 ~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
+||+|+|+++ .. +|+|+||+|++||+++|+ ||| || |+++ + .|+++|++
T Consensus 345 ~~v~~~y~~~~~~--------~l~~v~~~i~~G~~~~iv--------G~sGsGKSTLl~~-------l----~g~~~p~~ 397 (582)
T 3b60_A 345 RNVTFTYPGREVP--------ALRNINLKIPAGKTVALV--------GRSGSGKSTIASL-------I----TRFYDIDE 397 (582)
T ss_dssp EEEEECSSSSSCC--------SEEEEEEEECTTCEEEEE--------ECTTSSHHHHHHH-------H----TTTTCCSE
T ss_pred EEEEEEcCCCCCc--------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhccCCCC
Confidence 9999999743 33 999999999999999999 999 99 9999 8 99999999
Q ss_pred ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400 159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD 226 (298)
Q Consensus 159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d 226 (298)
|+|... .+++|+||||+|.+|++|++||+.++.. ...+++++.++++.+++.+++++ |+|++
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~p~g~~ 471 (582)
T 3b60_A 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART------EEYSREQIEEAARMAYAMDFINKMDNGLD 471 (582)
T ss_dssp EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT------SCCCHHHHHHHHHTTTCHHHHHHSTTGGG
T ss_pred CeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC------CCCCHHHHHHHHHHcCCHHHHHhcccccc
Confidence 998632 1457999999999999999999998641 13457789999999999988876 78999
Q ss_pred cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
+..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++ .|+|+|+||||++.++..
T Consensus 472 ~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 545 (582)
T 3b60_A 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA 545 (582)
T ss_dssp SBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTC
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 9876 7889999999999999999999999999999999999999999988765 389999999999987654
No 8
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-44 Score=358.24 Aligned_cols=244 Identities=18% Similarity=0.218 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400 6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (298)
.+.++...+..+..|+..+...+..+++...+.+|+.++++..++.+. ..........+.++++|
T Consensus 295 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---------------~~~~~~~~~~~~i~~~~ 359 (598)
T 3qf4_B 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD---------------PDAVELREVRGEIEFKN 359 (598)
T ss_dssp HHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC---------------SSCCCCCSCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---------------CCCCCCCCCCCeEEEEE
Confidence 444444455566789999999999999999999999998864322110 00001112235699999
Q ss_pred eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
|+|+|+.+.+ +|+|+||++++||+++|+ ||| || |+++ + .|+++|++|+|
T Consensus 360 v~~~y~~~~~--------~l~~isl~i~~G~~~~iv--------G~sGsGKSTll~~-------l----~g~~~p~~G~i 412 (598)
T 3qf4_B 360 VWFSYDKKKP--------VLKDITFHIKPGQKVALV--------GPTGSGKTTIVNL-------L----MRFYDVDRGQI 412 (598)
T ss_dssp EECCSSSSSC--------SCCSEEEECCTTCEEEEE--------CCTTSSTTHHHHH-------H----TTSSCCSEEEE
T ss_pred EEEECCCCCc--------cccceEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCcCCCCeEE
Confidence 9999975444 999999999999999999 999 99 9999 8 99999999998
Q ss_pred ecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc
Q psy11400 162 TKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA 229 (298)
Q Consensus 162 ~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~ 229 (298)
... .|++|+||||+|++|++|++||+.++.. ..+++++.++++.+++++++++ |+|+++..
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-------GATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-------TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 642 2457999999999999999999998742 3345678899999999887766 78999987
Q ss_pred c-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400 230 D-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE 298 (298)
Q Consensus 230 ~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~ 298 (298)
+ .+.+||||||||++|||||+++|+++|||||||+||+.++..+.+.+++ .|+|+|+||||+++++..|
T Consensus 486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d 557 (598)
T 3qf4_B 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNAD 557 (598)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCC
Confidence 6 7789999999999999999999999999999999999999999988775 4899999999999887543
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-42 Score=347.38 Aligned_cols=250 Identities=21% Similarity=0.233 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCc-EE
Q psy11400 4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNL-RG 82 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~ 82 (298)
++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++.... ..........+. ++
T Consensus 278 ~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--------------~~~~~~~~~~~~~i~ 343 (595)
T 2yl4_A 278 VGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--------------EGVILNEKSFQGALE 343 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--------------CSBCCCTTTCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--------------CCCCCCcCCCCCeEE
Confidence 355666677778888999999999999999999999999987642211100 000000011345 99
Q ss_pred EeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400 83 RLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF 157 (298)
Q Consensus 83 ~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~ 157 (298)
++||+|+|+++ ..+ +|+|+||++++||+++|+ ||| || |+++ + .|+++|+
T Consensus 344 ~~~v~~~y~~~~~~~-------vl~~isl~i~~G~~~~iv--------G~sGsGKSTLl~~-------l----~g~~~p~ 397 (595)
T 2yl4_A 344 FKNVHFAYPARPEVP-------IFQDFSLSIPSGSVTALV--------GPSGSGKSTVLSL-------L----LRLYDPA 397 (595)
T ss_dssp EEEEEEECSSCTTSE-------EEEEEEEEECTTCEEEEE--------CCTTSSSTHHHHH-------H----TTSSCCS
T ss_pred EEEEEEEeCCCCCCc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCCC
Confidence 99999999753 222 999999999999999999 999 99 9999 8 9999999
Q ss_pred Cceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCc
Q psy11400 158 GGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGW 225 (298)
Q Consensus 158 ~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 225 (298)
+|+|... .+++|+||||+|.+|++|++||+.++.... ...+++++.++++.+++.+++++ |+|+
T Consensus 398 ~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~l~~g~ 473 (595)
T 2yl4_A 398 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP----SSVTAEEIQRVAEVANAVAFIRNFPQGF 473 (595)
T ss_dssp EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST----TTSCHHHHHHHHHHTTCHHHHHTSSSGG
T ss_pred CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCc----cccCHHHHHHHHHHcCCHHHHHhCcccc
Confidence 9998632 145799999999999999999999875210 12467889999999999988766 7899
Q ss_pred ccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 226 DTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 226 d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
++..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++ .++|+|+||||++.++..
T Consensus 474 ~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 548 (595)
T 2yl4_A 474 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNA 548 (595)
T ss_dssp GCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHS
T ss_pred cccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcC
Confidence 99865 7889999999999999999999999999999999999999999998875 389999999999987654
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.7e-41 Score=359.60 Aligned_cols=244 Identities=19% Similarity=0.197 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeee
Q psy11400 8 YTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGIT 87 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 87 (298)
.++...+.....++..+...+..++...++..|+.++++..++.+... ..........+.|+++||+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-------------~~~~~~~~~~g~i~~~~v~ 394 (1284)
T 3g5u_A 328 LTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFS-------------KSGHKPDNIQGNLEFKNIH 394 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCC-------------SSCCCCTTCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccc-------------ccCCCCCCCCCeEEEEEEE
Confidence 334444455667888888888889999999999988876432221100 0000011124579999999
Q ss_pred EecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400 88 LGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT 162 (298)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~ 162 (298)
|+|+++. .+ +|+|+||+|++||+++|+ ||| || |+++ + .|+++|++|+|.
T Consensus 395 ~~y~~~~~~~-------vL~~isl~i~~G~~~~iv--------G~sGsGKSTl~~l-------l----~g~~~~~~G~i~ 448 (1284)
T 3g5u_A 395 FSYPSRKEVQ-------ILKGLNLKVKSGQTVALV--------GNSGCGKSTTVQL-------M----QRLYDPLDGMVS 448 (1284)
T ss_dssp ECCSSTTSCC-------SEEEEEEEECTTCEEEEE--------CCSSSSHHHHHHH-------T----TTSSCCSEEEEE
T ss_pred EEcCCCCCCc-------ceecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCeEEE
Confidence 9997532 22 999999999999999999 999 99 9999 8 999999999986
Q ss_pred cc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc
Q psy11400 163 KP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD 230 (298)
Q Consensus 163 ~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~ 230 (298)
.. .|++|+||||+|++|++|++|||.++. ...+++++.++++.+++.+++.+ |.|+++..+
T Consensus 449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-------EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC-------SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 43 245799999999999999999999864 23567889999999999887765 789999876
Q ss_pred -cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 231 -WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 231 -~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
.+.+|||||||||+|||||+++|++||||||||+||+++++.+.+.+++ .|+|+|+||||+++++..
T Consensus 522 ~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~ 591 (1284)
T 3g5u_A 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA 591 (1284)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTC
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence 7889999999999999999999999999999999999999999888764 489999999999988754
No 11
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-40 Score=298.11 Aligned_cols=183 Identities=19% Similarity=0.236 Sum_probs=158.2
Q ss_pred cEEEeeeeEecCC-CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 80 LRGRLGITLGLRS-GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~-~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.|+++||++.|+. +.. +|+|+||+|++||+++|+ ||| || |+++ + +|++
T Consensus 7 ~~~~~~l~~~y~~~~~~--------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 59 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV--------ILDNINLSIKQGEVIGIV--------GRSGSGKSTLTKL-------I----QRFY 59 (247)
T ss_dssp EEEEEEEEEESSTTSCE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSS
T ss_pred ceeEEEEEEEeCCCCcc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 5899999999953 333 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-c
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-E 222 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~ 222 (298)
+|++|+|... .+++|+||||+|.+|..|++||+.++.. ....+++.++++.+++.+++++ +
T Consensus 60 ~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~ 132 (247)
T 2ff7_A 60 IPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-------GMSVEKVIYAAKLAGAHDFISELR 132 (247)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT-------TCCHHHHHHHHHHHTCHHHHHTST
T ss_pred CCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC-------CCCHHHHHHHHHHhChHHHHHhCc
Confidence 9999998532 1346999999999888899999998631 2345678889999999988876 4
Q ss_pred CCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 223 KGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 223 ~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
.|+++..+ .+.+|||||||||+|||||+++|+++|||||||+||+.++..+.+.+++ .|+|+|+|||+++.+..
T Consensus 133 ~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~ 209 (247)
T 2ff7_A 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN 209 (247)
T ss_dssp TGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT
T ss_pred chhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh
Confidence 57877755 6789999999999999999999999999999999999999999988765 38999999999987754
No 12
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-40 Score=297.32 Aligned_cols=184 Identities=23% Similarity=0.343 Sum_probs=156.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+.+.. +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 1 ml~~~~l~~~y~~~~~--------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 53 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ--------ILRDISFEAQPNSIIAFA--------GPSGGGKSTIFSL-------L----ERFYQ 53 (243)
T ss_dssp CEEEEEEEECSSSSSC--------SEEEEEEEECTTEEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred CEEEEEEEEEeCCCCc--------eEEEeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 3789999999953334 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400 156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK 223 (298)
Q Consensus 156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~ 223 (298)
|++|+|... .+++|+||||++.+|..|++||+.++.. ....++++.++++.+++.+++++ +.
T Consensus 54 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~ 127 (243)
T 1mv5_A 54 PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE------GDYTDEDLWQVLDLAFARSFVENMPD 127 (243)
T ss_dssp CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT------SCSCHHHHHHHHHHHTCTTTTTSSTT
T ss_pred CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc------CCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 999998531 2467999999999888899999998631 12345678889999999887766 45
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
|+++..+ .+.+|||||||||+|||||+++|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+..
T Consensus 128 gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp GGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred chhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 7777654 6789999999999999999999999999999999999988888877654 38999999999987654
No 13
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.5e-40 Score=350.68 Aligned_cols=243 Identities=19% Similarity=0.235 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEec
Q psy11400 11 GRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGL 90 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 90 (298)
...+.....+++.+...+..+++...+..|+.++++..++.+... ..........+.++++||+|.|
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-------------~~~~~~~~~~g~i~~~~v~~~y 1040 (1284)
T 3g5u_A 974 FSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS-------------TQGLKPNMLEGNVQFSGVVFNY 1040 (1284)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCC-------------SSCCCTTTTSCCEEEEEEEBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc-------------cccccccCCCCcEEEEEEEEEC
Confidence 334444555666666666677788888999998877533221100 0000001124579999999999
Q ss_pred CCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-
Q psy11400 91 RSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP- 164 (298)
Q Consensus 91 ~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~- 164 (298)
++.. .+ +|+|+||+|++||+++|+ ||| || |+++ + .|+++|++|+|...
T Consensus 1041 ~~~~~~~-------~l~~vsl~i~~Ge~v~iv--------G~sGsGKSTl~~~-------l----~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1041 PTRPSIP-------VLQGLSLEVKKGQTLALV--------GSSGCGKSTVVQL-------L----ERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp SCGGGCC-------SBSSCCEEECSSSEEEEE--------CSSSTTHHHHHHH-------H----TTSSCCSEEEEESSS
T ss_pred CCCCCCe-------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCCCCCEEEECC
Confidence 7532 22 999999999999999999 999 99 9999 8 99999999998642
Q ss_pred ----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400 165 ----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI 232 (298)
Q Consensus 165 ----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~ 232 (298)
.|++|+||||+|.+|.+|++||+.++... ...+++++.++++.+++.+++++ ++|+|+..+ .+
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~-----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS-----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS-----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC-----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 26789999999999999999999987531 23567889999999999988866 789999876 78
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
.+|||||||||+|||||+++|++||||||||+||+.+++.+.+.+++ .|+|+|+||||++++...
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~ 1236 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA 1236 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSC
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcC
Confidence 89999999999999999999999999999999999999999998875 489999999999988754
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.2e-40 Score=293.71 Aligned_cols=182 Identities=20% Similarity=0.203 Sum_probs=146.0
Q ss_pred cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+++++||+++|+.+. .+ +|+|+||+|++||+++|+ ||| || |+++ + +|+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~-------~L~~isl~i~~Ge~~~ii--------G~nGsGKSTLl~~-------l----~Gl 54 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIY-------ALKNVNLNIKEGEFVSIM--------GPSGSGKSTMLNI-------I----GCL 54 (235)
T ss_dssp CEEEEEEEEEEEETTEEEE-------EEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTS
T ss_pred CEEEEEEEEEeCCCCccee-------eEEeeeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcC
Confidence 378999999996432 22 899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hhhcCCCHHHHHHHHHHcCC
Q psy11400 154 WPLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 154 ~~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~i~~~l~~~~l 215 (298)
.+|++|+|.... +++|+||||+|.+++ .|++||+.++..... ........+++.++++.+++
T Consensus 55 ~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 134 (235)
T 3tif_A 55 DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134 (235)
T ss_dssp SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC
Confidence 999999986321 235999999998876 499999987521100 00000113457788899998
Q ss_pred chhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400 216 GYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR 290 (298)
Q Consensus 216 ~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~ 290 (298)
.+.. ++ .+.+|||||||||+|||||+++|++||||||||+||+.....+.+++++ .|+|+|+|||+
T Consensus 135 ~~~~~~~---------~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 135 EERFANH---------KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp CGGGTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred ChhhhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 7543 44 3689999999999999999999999999999999999999998887754 38999999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
++.+++
T Consensus 206 ~~~~~~ 211 (235)
T 3tif_A 206 INVARF 211 (235)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 986654
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.8e-39 Score=293.31 Aligned_cols=186 Identities=22% Similarity=0.276 Sum_probs=152.0
Q ss_pred CcEEEeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 79 NLRGRLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.+++++||++.|+++ ..+ +|+|+||+|++|++++|+ ||| || |+++ + +|+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~-------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLlk~-------l----~Gl 68 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQ-------VLQGLTFTLYPGKVTALV--------GPNGSGKSTVAAL-------L----QNL 68 (271)
T ss_dssp CCEEEEEEEECCTTCTTSC-------CEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTS
T ss_pred ceEEEEEEEEEeCCCCCce-------eeEeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence 479999999999642 122 999999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400 154 WPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR- 221 (298)
Q Consensus 154 ~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~- 221 (298)
++|++|+|... .+++|+||||++.+|..|++||+.++... ....+++.++++..++.++++.
T Consensus 69 ~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~l~~l 142 (271)
T 2ixe_A 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR------TPTMEEITAVAMESGAHDFISGF 142 (271)
T ss_dssp SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSS------CCCHHHHHHHHHHHTCHHHHHHS
T ss_pred CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhccc------CChHHHHHHHHHHHhHHHHHHhh
Confidence 99999998532 13469999999998888999999986421 1111345555666677666655
Q ss_pred cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcchhhh
Q psy11400 222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~~~~ 296 (298)
+.|+++..+ .+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.+++. |+|+|+|||+++.+..
T Consensus 143 ~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp TTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred hcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 335655543 67899999999999999999999999999999999999999999988752 7899999999987654
No 16
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.7e-39 Score=289.98 Aligned_cols=185 Identities=22% Similarity=0.276 Sum_probs=155.7
Q ss_pred CCcEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
..+++++||++.|++.. .+ +|+|+||+|++|++++|+ ||| || |+++ + .|
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~-------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G 68 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHR-------TLKSINFFIPSGTTCALV--------GHTGSGKSTIAKL-------L----YR 68 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TT
T ss_pred CCeEEEEEEEEEeCCCCcCc-------eeEeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence 35799999999996432 22 999999999999999999 999 99 9999 8 89
Q ss_pred ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+++| +|+|... .+++|+||||+|.+|..|++||+.++.. ....+++.++++.+++.++.+.
T Consensus 69 l~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~l~~~~l~~~~~~ 140 (260)
T 2ghi_A 69 FYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL-------DATDEEVIKATKSAQLYDFIEA 140 (260)
T ss_dssp SSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT-------TCCHHHHHHHHHHTTCHHHHHT
T ss_pred cCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCC-------CCCHHHHHHHHHHhCCHHHHHh
Confidence 9887 7998531 1457999999999888899999998641 1245667888999999877654
Q ss_pred -cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 222 -EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 -~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
+.++++..+ .+.+|||||||||+|||||+++|++|||||||++||+.++..+.+.+++ .++|+|+|||+++.+..
T Consensus 141 l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~ 219 (260)
T 2ghi_A 141 LPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS 219 (260)
T ss_dssp STTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT
T ss_pred ccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 566776544 6789999999999999999999999999999999999999999988765 37999999999987654
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-39 Score=297.53 Aligned_cols=180 Identities=17% Similarity=0.207 Sum_probs=148.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+++.. +|+|+||+|++||+++|+ ||| || |+++ + +|+++
T Consensus 7 ~l~i~~ls~~y~~~~~--------~L~~isl~i~~Ge~~~ii--------GpnGsGKSTLl~~-------l----~Gl~~ 59 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTH--------ALKGINMNIKRGEVTAIL--------GGNGVGKSTLFQN-------F----NGILK 59 (275)
T ss_dssp EEEEEEEEEECTTSCE--------EEEEEEEEEETTSEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred EEEEEEEEEEECCCCe--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCCC
Confidence 6899999999975444 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|... .+++||||||+| .++..|++||+.++...... ......+++.++++.+++.++.+
T Consensus 60 p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~ 138 (275)
T 3gfo_A 60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-PEDEIRKRVDNALKRTGIEHLKD 138 (275)
T ss_dssp CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhc
Confidence 999998532 135699999998 46778999999875321100 00011346788999999987766
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
++ +.+|||||||||+|||||+.+|++||||||||+||+.++..+.+++++ .|+|||+|||+++.+..
T Consensus 139 ~~---------~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 139 KP---------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL 209 (275)
T ss_dssp SB---------GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG
T ss_pred CC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH
Confidence 53 679999999999999999999999999999999999999988887653 38999999999998754
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-38 Score=283.53 Aligned_cols=181 Identities=18% Similarity=0.245 Sum_probs=150.2
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+.+..+ +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 6 ~l~~~~l~~~y~~~~~~-------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 59 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTP-------VLKDINFKIERGQLLAVA--------GSTGAGKTSLLMM-------I----MGELE 59 (229)
T ss_dssp EEEEEEEEECSSTTSCC-------SEEEEEEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred eEEEEEEEEEeCCCCce-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence 68999999999643322 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WID 233 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~ 233 (298)
|++|+|.... +|+|+||+|.+++.|++||+.++.. .......++++.+++.+.+++ +.+.++..+ .+.
T Consensus 60 p~~G~i~~~g--~i~~v~q~~~~~~~tv~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (229)
T 2pze_A 60 PSEGKIKHSG--RISFCSQFSWIMPGTIKENIIFGVS--------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129 (229)
T ss_dssp CSEEEEEECS--CEEEECSSCCCCSBCHHHHHHTTSC--------CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT
T ss_pred CCccEEEECC--EEEEEecCCcccCCCHHHHhhccCC--------cChHHHHHHHHHhCcHHHHHhCcccccccccCCCC
Confidence 9999997653 6999999999888899999998642 122345566777788766654 333444333 578
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~ 296 (298)
+||||||||++|||||+++|+++||||||++||+.++..+.+.+ ++ .++|+|++||+++.+..
T Consensus 130 ~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 99999999999999999999999999999999999999999863 33 37999999999987654
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.1e-39 Score=305.46 Aligned_cols=185 Identities=23% Similarity=0.253 Sum_probs=150.8
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
+.+|+++||++.|+.+.. ...+|+|+||+|++||+++|+ ||| || |+++ + +|+
T Consensus 22 ~~mi~v~~ls~~y~~~~~-----~~~aL~~vsl~i~~Gei~~Ii--------GpnGaGKSTLlr~-------i----~GL 77 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTR-----TIQALNNVSLHVPAGQIYGVI--------GASGAGKSTLIRC-------V----NLL 77 (366)
T ss_dssp -CCEEEEEEEEEEECSSS-----EEEEEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTS
T ss_pred CceEEEEeEEEEeCCCCC-----CeEEEEeeEEEEcCCCEEEEE--------cCCCchHHHHHHH-------H----hcC
Confidence 357999999999964321 012899999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400 154 WPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218 (298)
Q Consensus 154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~ 218 (298)
.+|++|+|... .|++||||||++.+++ .|++||+.++...... ......+++.++++.++|.+.
T Consensus 78 ~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~ 156 (366)
T 3tui_C 78 ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDK 156 (366)
T ss_dssp SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGG
T ss_pred CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchH
Confidence 99999998531 1467999999998765 5999999886421100 001123567889999999876
Q ss_pred hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW 294 (298)
Q Consensus 219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~ 294 (298)
.++ ++.+|||||||||+|||||+.+|++|||||||||||+.+...+++++++ .|+|||+|||+++.+
T Consensus 157 ~~~---------~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 157 HDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp TTC---------CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred hcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 655 3789999999999999999999999999999999999999999888764 389999999999987
Q ss_pred hh
Q psy11400 295 TH 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 228 ~~ 229 (366)
T 3tui_C 228 KR 229 (366)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=283.73 Aligned_cols=181 Identities=22% Similarity=0.221 Sum_probs=148.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|+.+..+ +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 3 ~l~~~~l~~~y~~~~~~-------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (237)
T 2cbz_A 3 SITVRNATFTWARSDPP-------TLNGITFSIPEGALVAVV--------GQVGCGKSSLLSA-------L----LAEMD 56 (237)
T ss_dssp CEEEEEEEEESCTTSCC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTCSE
T ss_pred eEEEEEEEEEeCCCCCc-------eeeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 48999999999642222 999999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc-ccCC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA-DWID 233 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~-~~~~ 233 (298)
|++|+|.... +|+||||+|.++..|++||+.++... ..+...++++.+++.+.+.. +.++++.. ..+.
T Consensus 57 p~~G~I~~~g--~i~~v~Q~~~~~~~tv~enl~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (237)
T 2cbz_A 57 KVEGHVAIKG--SVAYVPQQAWIQNDSLRENILFGCQL--------EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGV 126 (237)
T ss_dssp EEEEEEEECS--CEEEECSSCCCCSEEHHHHHHTTSCC--------CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSB
T ss_pred CCCceEEECC--EEEEEcCCCcCCCcCHHHHhhCcccc--------CHHHHHHHHHHHhhHHHHHhccccccccccCCCC
Confidence 9999997654 69999999988888999999986421 11234455666666544433 33444433 3678
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---h--cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---E--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~--~~~TiIiitH~l~~~~~ 296 (298)
+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+. + .++|+|+|||+++.+..
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~ 194 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ 194 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh
Confidence 999999999999999999999999999999999999999999873 2 38999999999987654
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.2e-39 Score=288.37 Aligned_cols=178 Identities=19% Similarity=0.192 Sum_probs=148.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+.+.. +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 4 ~l~i~~l~~~y~~~~~--------vl~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 56 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF--------LFQQLNFDLNKGDILAVL--------GQNGCGKSTLLDL-------L----LGIHR 56 (253)
T ss_dssp EEEEEEEEEEETTTTE--------EEEEEEEEEETTCEEEEE--------CCSSSSHHHHHHH-------H----TTSSC
T ss_pred eEEEeeEEEEeCCCCe--------EEEEEEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999952333 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hhh--hcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DMI--QKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~ 231 (298)
|++|+|. .+++|+||||++.++ ..|++||+.++.... ... ......+++.++++.+++.++.+++
T Consensus 57 p~~G~I~--~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------- 125 (253)
T 2nq2_C 57 PIQGKIE--VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE--------- 125 (253)
T ss_dssp CSEEEEE--ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB---------
T ss_pred CCCcEEE--EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC---------
Confidence 9999998 456799999999876 579999998863211 000 0001135678899999998766553
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+++ . |+|+|++||+++.+.
T Consensus 126 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV 193 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 679999999999999999999999999999999999999999888764 2 899999999998764
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-38 Score=287.15 Aligned_cols=180 Identities=21% Similarity=0.202 Sum_probs=150.3
Q ss_pred cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
+++++||++.|+.+. .+ +|+|+||+|++|++++|+ ||| || |+++ + +|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~-------vl~~vsl~i~~Ge~~~li--------G~nGsGKSTLl~~-------i----~G 55 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK-------ALENVSLVINEGECLLVA--------GNTGSGKSTLLQI-------V----AG 55 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE-------EEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TT
T ss_pred EEEEEEEEEEecCCCccccc-------eeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hC
Confidence 488999999996221 22 899999999999999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc--------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc--hhhh
Q psy11400 153 LWPLFGGTVTKP--------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG--YILN 220 (298)
Q Consensus 153 l~~~~~G~i~~~--------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~~ 220 (298)
+++|++|+|... .+++|+||||+| .++..|++||+.++.... .......+++.++++.+++. ++.+
T Consensus 56 l~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~ 133 (266)
T 2yz2_A 56 LIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKD 133 (266)
T ss_dssp SSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTT
T ss_pred CCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCccccc
Confidence 999999998642 245799999996 456789999998864211 11122356788999999998 7766
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
++ +.+|||||||||+|||||+++|++|||||||++||+.++..+.+.+++ .|+|||+|||+++.+..
T Consensus 134 ~~---------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 134 RV---------PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN 203 (266)
T ss_dssp CC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG
T ss_pred CC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 53 679999999999999999999999999999999999999999888764 38999999999987753
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.8e-39 Score=285.50 Aligned_cols=179 Identities=26% Similarity=0.231 Sum_probs=146.8
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|++ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 4 ~l~~~~l~~~y~~-~~--------~l~~vsl~i~~Ge~~~ii--------G~nGsGKSTLl~~-------l----~Gl~~ 55 (224)
T 2pcj_A 4 ILRAENIKKVIRG-YE--------ILKGISLSVKKGEFVSII--------GASGSGKSTLLYI-------L----GLLDA 55 (224)
T ss_dssp EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------ECTTSCHHHHHHH-------H----TTSSC
T ss_pred EEEEEeEEEEECC-Ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 5899999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|+|.... +++|+||||++.++. .|++||+.++...... ......+++.++++.+++.++.
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~ 134 (224)
T 2pcj_A 56 PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-PKKEAKERGEYLLSELGLGDKL 134 (224)
T ss_dssp CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCT
T ss_pred CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCchhh
Confidence 9999985311 146999999998765 6999999875311100 0001134678899999997665
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+++ +.+|||||||||+|||||+.+|+++||||||++||+.++..+.+++++ .|+|+|+|||+++.+..
T Consensus 135 ~~~---------~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~ 205 (224)
T 2pcj_A 135 SRK---------PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAEL 205 (224)
T ss_dssp TCC---------GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTT
T ss_pred hCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence 553 679999999999999999999999999999999999999998887754 38999999999987643
No 24
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-38 Score=298.77 Aligned_cols=178 Identities=20% Similarity=0.179 Sum_probs=148.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+|+++||++.|. +.. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 4 ~l~i~~ls~~y~-~~~--------~L~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl~~ 55 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTP--------VLNDISLSLDPGEILFII--------GASGCGKTTLLRC-------L----AGFEQ 55 (359)
T ss_dssp CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----HTSSC
T ss_pred EEEEEeEEEEEC-CEE--------EEEeeEEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----hcCCC
Confidence 589999999995 233 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec-------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 156 LFGGTVTK-------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~-------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
|++|+|.. +.+++||||||++.+|+ .|++||+.|+...... ......+++.++++.++|.++.++
T Consensus 56 p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r 134 (359)
T 3fvq_A 56 PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGR 134 (359)
T ss_dssp CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTS
T ss_pred CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCchHhcC
Confidence 99999852 12467999999998875 6999999997532110 011123568899999999887766
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~ 295 (298)
+ +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+ ++.|+|+|+|||+++.+.
T Consensus 135 ~---------~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 135 Y---------PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp C---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred C---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4 6899999999999999999999999999999999999888877543 345999999999998764
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-38 Score=279.64 Aligned_cols=176 Identities=14% Similarity=0.218 Sum_probs=148.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.|++ . +|+|+||+|++||+++|+ ||| || |+++ + +|++
T Consensus 9 ~~l~~~~ls~~y~~--~--------il~~vsl~i~~Ge~~~ii--------G~NGsGKSTLlk~-------l----~Gl~ 59 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--P--------VLERITMTIEKGNVVNFH--------GPNGIGKTTLLKT-------I----STYL 59 (214)
T ss_dssp CEEEEEEEEEESSS--E--------EEEEEEEEEETTCCEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred ceEEEEEEEEEeCC--e--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 46999999999953 4 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400 155 PLFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227 (298)
Q Consensus 155 ~~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~ 227 (298)
+|++|+|... .++.|+||||++.++. .|++||+.++...... ....+++.++++.+++.+. +++
T Consensus 60 ~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~gl~~~-~~~----- 130 (214)
T 1sgw_A 60 KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV---KVNKNEIMDALESVEVLDL-KKK----- 130 (214)
T ss_dssp CCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTCCCT-TSB-----
T ss_pred CCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC---chHHHHHHHHHHHcCCCcC-CCC-----
Confidence 9999998642 3467999999998776 4999999875311100 1235678899999999765 443
Q ss_pred ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|||++||+++.+..
T Consensus 131 ----~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp ----GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred ----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 679999999999999999999999999999999999999888887654 37999999999987654
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-38 Score=287.84 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=147.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 7 ~l~i~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~li--------G~nGsGKSTLlk~-------l----~Gl~~ 58 (257)
T 1g6h_A 7 ILRTENIVKYFGE-FK--------ALDGVSISVNKGDVTLII--------GPNGSGKSTLINV-------I----TGFLK 58 (257)
T ss_dssp EEEEEEEEEEETT-EE--------EEEEECCEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSC
T ss_pred EEEEeeeEEEECC-Ee--------eEeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcc--hhh----------hhcCCCHHHHHHHH
Q psy11400 156 LFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTK--EDM----------IQKGITDADLTEYL 210 (298)
Q Consensus 156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~----------~~~~~~~~~i~~~l 210 (298)
|++|+|.... +++|+||||++.++. .|++||+.++... ... .......+++.+++
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 59 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHH
Confidence 9999985321 236999999997764 6999999886321 000 00001134678899
Q ss_pred HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEE
Q psy11400 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTV 287 (298)
Q Consensus 211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIii 287 (298)
+.+++.+..+++ +.+|||||||||+|||||+++|++|||||||++||+.+...+.+++++ .|+|||+|
T Consensus 139 ~~~~l~~~~~~~---------~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 209 (257)
T 1g6h_A 139 EFLKLSHLYDRK---------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209 (257)
T ss_dssp HHTTCGGGTTSB---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHcCCchhhCCC---------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 999998766553 679999999999999999999999999999999999999999888764 38999999
Q ss_pred ecCcchhh
Q psy11400 288 SHRKSLWT 295 (298)
Q Consensus 288 tH~l~~~~ 295 (298)
||+++.+.
T Consensus 210 tHd~~~~~ 217 (257)
T 1g6h_A 210 EHRLDIVL 217 (257)
T ss_dssp CSCCSTTG
T ss_pred ecCHHHHH
Confidence 99998765
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.1e-38 Score=289.15 Aligned_cols=178 Identities=23% Similarity=0.245 Sum_probs=146.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|.+ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+++
T Consensus 24 ~l~i~~l~~~y~~-~~--------vL~~vsl~i~~Gei~~li--------G~NGsGKSTLlk~-------l----~Gl~~ 75 (263)
T 2olj_A 24 MIDVHQLKKSFGS-LE--------VLKGINVHIREGEVVVVI--------GPSGSGKSTFLRC-------L----NLLED 75 (263)
T ss_dssp SEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred eEEEEeEEEEECC-EE--------EEEeeEEEEcCCCEEEEE--------cCCCCcHHHHHHH-------H----HcCCC
Confidence 6999999999952 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC-------------CCcEEEEcCcCCCCC-CCHHHHHccCC-cchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTKPP-------------RGKLFYVPQRPYMTL-GTLRDQVIYPH-TKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~~~-------------r~~i~~v~Q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|.... +++|+||||++.++. .|++||+.++. ..... ......+++.++++.+++.++.+
T Consensus 76 p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~ 154 (263)
T 2olj_A 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKW-PREKAEAKAMELLDKVGLKDKAH 154 (263)
T ss_dssp CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhc
Confidence 9999985311 235999999998775 49999998742 10000 00011346788999999987665
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
++ +.+|||||||||+|||||+.+|++|||||||++||+.++..+.+++++ .|+|||+|||+++.+.
T Consensus 155 ~~---------~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 155 AY---------PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp SC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CC---------hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 53 679999999999999999999999999999999999999998887754 3899999999998765
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-38 Score=282.34 Aligned_cols=177 Identities=17% Similarity=0.145 Sum_probs=144.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|++ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+++
T Consensus 6 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~ 57 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IH--------AIKGIDLKVPRGQIVTLI--------GANGAGKTTTLSA-------I----AGLVR 57 (240)
T ss_dssp EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSC
T ss_pred eEEEEeEEEEECC-ee--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 6899999999953 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC------------CCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcC-Cchhhhh
Q psy11400 156 LFGGTVTKPP------------RGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNR 221 (298)
Q Consensus 156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~ 221 (298)
|++|+|.... +++|+||||++.++.. |++||+.++.... .......+.+.++++.++ +.+..++
T Consensus 58 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~ 135 (240)
T 1ji0_A 58 AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQ 135 (240)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTS
T ss_pred CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcC
Confidence 9999985311 2359999999988765 9999998853110 001111345677788884 7655444
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+.+|||||||||+|||||+++|++|||||||++||+.++..+.+.+++ .|+|+|+|||+++.+.
T Consensus 136 ---------~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 136 ---------LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp ---------BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred ---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3789999999999999999999999999999999999999999888764 4899999999997653
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2e-38 Score=287.16 Aligned_cols=178 Identities=20% Similarity=0.186 Sum_probs=146.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|.+ .. +|+|+||+|++|++++|+ ||| || |+++ + +|+.+
T Consensus 6 ~l~i~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~li--------G~nGsGKSTLlk~-------l----~Gl~~ 57 (262)
T 1b0u_A 6 KLHVIDLHKRYGG-HE--------VLKGVSLQARAGDVISII--------GSSGSGKSTFLRC-------I----NFLEK 57 (262)
T ss_dssp CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred eEEEeeEEEEECC-EE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 6999999999952 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCC-cchhhhhcCCCHHHHHHH
Q psy11400 156 LFGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPH-TKEDMIQKGITDADLTEY 209 (298)
Q Consensus 156 ~~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~i~~~ 209 (298)
|++|+|... .+++|+||||++.++. .|++||+.++. ..... ......+++.++
T Consensus 58 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~ 136 (262)
T 1b0u_A 58 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL-SKHDARERALKY 136 (262)
T ss_dssp CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCC-CHHHHHHHHHHH
Confidence 999998531 1235999999998765 59999998742 10000 000113467889
Q ss_pred HHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEE
Q psy11400 210 LQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLF 285 (298)
Q Consensus 210 l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiI 285 (298)
++.+++.++ .+++ +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|+|||
T Consensus 137 l~~~~L~~~~~~~~---------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi 207 (262)
T 1b0u_A 137 LAKVGIDERAQGKY---------PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207 (262)
T ss_dssp HHHTTCCHHHHTSC---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHcCCCchhhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 999999877 6653 679999999999999999999999999999999999999998887754 389999
Q ss_pred EEecCcchhh
Q psy11400 286 TVSHRKSLWT 295 (298)
Q Consensus 286 iitH~l~~~~ 295 (298)
+|||+++.+.
T Consensus 208 ~vtHd~~~~~ 217 (262)
T 1b0u_A 208 VVTHEMGFAR 217 (262)
T ss_dssp EECSCHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998765
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9e-38 Score=282.02 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=148.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.++++||++.|. +.. +|+|+||+|++||+++|+ ||| || |+++ + +|++
T Consensus 14 ~~l~i~~l~~~y~-~~~--------vl~~vsl~i~~Gei~~l~--------G~NGsGKSTLlk~-------l----~Gl~ 65 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKE--------ILKGISFEIEEGEIFGLI--------GPNGAGKTTTLRI-------I----STLI 65 (256)
T ss_dssp CCEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred CeEEEEEEEEEEC-CEE--------EEEeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 4799999999995 333 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 155 PLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
+|++|+|... .+++|+||||++.++. .|++||+.++...... ......+++.++++.+++.++.+++
T Consensus 66 ~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~- 143 (256)
T 1vpl_A 66 KPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDR- 143 (256)
T ss_dssp CCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSB-
T ss_pred CCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCCchHhcCC-
Confidence 9999998532 1357999999998775 4999999874211000 0000124678899999998776653
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|+|||++||+++.+..
T Consensus 144 --------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 144 --------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp --------GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred --------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 679999999999999999999999999999999999999999888764 48999999999987654
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.3e-38 Score=299.97 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=148.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.|+++||++.|+ +.. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~yg-~~~--------~L~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl~~ 54 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVV--------VSKDINLDIHEGEFVVFV--------GPSGCGKSTLLRM-------I----AGLET 54 (381)
T ss_dssp CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred EEEEEeEEEEEC-CEE--------EEeeeEEEECCCCEEEEE--------cCCCchHHHHHHH-------H----HcCCC
Confidence 489999999995 233 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|.. +.++.||||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++
T Consensus 55 p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~--- 130 (381)
T 3rlf_A 55 ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130 (381)
T ss_dssp CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTCC---
T ss_pred CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC---
Confidence 99999853 12457999999998875 6999999986421100 0011235688899999998777663
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 131 ------p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 131 ------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 198 (381)
T ss_dssp ------GGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH
T ss_pred ------hhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 789999999999999999999999999999999999998888776653 4999999999998764
No 32
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=297.02 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=157.4
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
...|+++||++.|+.+... +|+|+||+|++||+++|+ ||| || |+++ + +|+
T Consensus 17 ~~~i~~~~l~~~y~~~~~~-------~L~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl 70 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNA-------ILENISFSISPGQRVGLL--------GRTGSGKSTLLSA-------F----LRL 70 (390)
T ss_dssp SCCEEEEEEEEESSSSSCC-------SEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----HTC
T ss_pred CCeEEEEEEEEEecCCCeE-------EeeceeEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hCC
Confidence 3569999999999744332 999999999999999999 999 99 9999 8 999
Q ss_pred cccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400 154 WPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR- 221 (298)
Q Consensus 154 ~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~- 221 (298)
++ ++|+|... .+++|+||||++.+|.+|++||+.+.. ....+++.++++.+++.++.++
T Consensus 71 ~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~--------~~~~~~v~~~l~~~~L~~~~~~~ 141 (390)
T 3gd7_A 71 LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA--------AHSDQEIWKVADEVGLRSVIEQF 141 (390)
T ss_dssp SE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC--------CSCHHHHHHHHHHTTCHHHHTTS
T ss_pred CC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc--------ccCHHHHHHHHHHhCCHHHHhhc
Confidence 88 88998632 135799999999999999999997532 2346778899999999988877
Q ss_pred cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400 222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~ 296 (298)
+..+++... .+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .++|+|+|||+++.+..
T Consensus 142 p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~ 219 (390)
T 3gd7_A 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE 219 (390)
T ss_dssp TTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTT
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHh
Confidence 555666554 5678999999999999999999999999999999999999999998876 37999999999987654
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.7e-38 Score=283.97 Aligned_cols=178 Identities=19% Similarity=0.175 Sum_probs=149.2
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|.+ .. +|+|+||+|++||+++|+ ||| || |+++ + +|++
T Consensus 10 ~~l~~~~l~~~~~~-~~--------vL~~vsl~i~~Ge~~~li--------G~nGsGKSTLl~~-------l----~Gl~ 61 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ-QA--------LINDVSLHIASGEMVAII--------GPNGAGKSTLLRL-------L----TGYL 61 (266)
T ss_dssp CEEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CCTTSCHHHHHHH-------H----TSSS
T ss_pred ceEEEEeEEEEeCC-ee--------EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence 36899999999953 33 999999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400 155 PLFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222 (298)
Q Consensus 155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~ 222 (298)
+|++|+|... .++.++|+||++.+ +..|++||+.++.... ......+++.++++.+++.++.+++
T Consensus 62 ~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~ 138 (266)
T 4g1u_C 62 SPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRD 138 (266)
T ss_dssp CCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSB
T ss_pred CCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCC
Confidence 9999998632 12459999999976 5679999998864211 1122356788999999998766553
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhc------CCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYH------RPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS 292 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~------~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~ 292 (298)
+.+|||||||||+|||||++ +|++|||||||||||+..+..+.+++++ .++|+|+|||+++
T Consensus 139 ---------~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 139 ---------YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp ---------GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred ---------cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 67999999999999999999 9999999999999999999998887764 2579999999998
Q ss_pred hhhh
Q psy11400 293 LWTH 296 (298)
Q Consensus 293 ~~~~ 296 (298)
.+..
T Consensus 210 ~~~~ 213 (266)
T 4g1u_C 210 LAAL 213 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-38 Score=295.49 Aligned_cols=180 Identities=25% Similarity=0.265 Sum_probs=149.4
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++|+++.|+.+.. +|+|+||+|++||+++|+ ||| || |+++ + +|+.
T Consensus 13 ~~l~~~~l~~~y~g~~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~ 65 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGAR--------SVRGVSFQIREGEMVGLL--------GPSGSGKTTILRL-------I----AGLE 65 (355)
T ss_dssp EEEEEEEEEECCTTSTT--------CEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTSS
T ss_pred ceEEEEEEEEEEcCCCE--------EEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 46999999999942333 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400 155 PLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224 (298)
Q Consensus 155 ~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 224 (298)
+|++|+|... .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++
T Consensus 66 ~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~-- 142 (355)
T 1z47_A 66 RPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV-PKDEMDARVRELLRFMRLESYANRF-- 142 (355)
T ss_dssp CCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTSC--
T ss_pred CCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCC--
Confidence 9999998531 2467999999998775 6999999986421100 0001135688899999998777663
Q ss_pred cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 143 -------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 143 -------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEAL 210 (355)
T ss_dssp -------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred -------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 3899999999998764
No 35
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-37 Score=292.63 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=148.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|.+ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~ 54 (359)
T 2yyz_A 3 SIRVVNLKKYFGK-VK--------AVDGVSFEVKDGEFVALL--------GPSGCGKTTTLLM-------L----AGIYK 54 (359)
T ss_dssp CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----HTSSC
T ss_pred EEEEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------cCCCchHHHHHHH-------H----HCCCC
Confidence 4899999999952 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++
T Consensus 55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~--- 130 (359)
T 2yyz_A 55 PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI-SKDEVEKRVVEIARKLLIDNLLDRK--- 130 (359)
T ss_dssp CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS-HHHHTTHHHHHHHHHTTCGGGTTSC---
T ss_pred CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcCC---
Confidence 999998531 2467999999998775 6999999987432110 0011235688999999998877663
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 131 ------~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~ 198 (359)
T 2yyz_A 131 ------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAM 198 (359)
T ss_dssp ------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred ------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 3899999999998764
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-37 Score=278.35 Aligned_cols=173 Identities=23% Similarity=0.267 Sum_probs=145.0
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|+ . +|+|+||++++ ++++|+ ||| || |+++ + +|+.+
T Consensus 1 ml~~~~l~~~y~---~--------~l~~isl~i~~-e~~~li--------G~nGsGKSTLl~~-------l----~Gl~~ 49 (240)
T 2onk_A 1 MFLKVRAEKRLG---N--------FRLNVDFEMGR-DYCVLL--------GPTGAGKSVFLEL-------I----AGIVK 49 (240)
T ss_dssp CCEEEEEEEEET---T--------EEEEEEEEECS-SEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred CEEEEEEEEEeC---C--------EEeeeEEEECC-EEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 368999999994 2 69999999999 999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .+++|+||||++.++. .|++||+.++...... . ...+++.++++.+++.++.+++
T Consensus 50 p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~--- 123 (240)
T 2onk_A 50 PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER-V--ERDRRVREMAEKLGIAHLLDRK--- 123 (240)
T ss_dssp CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH-H--HHHHHHHHHHHTTTCTTTTTCC---
T ss_pred CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC-c--hHHHHHHHHHHHcCCHHHhcCC---
Confidence 999998531 2457999999998776 4999999986532110 0 1145678899999997766553
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+++|+++||||||++||+.++..+.+++++ .|+|+|++||+++.+.
T Consensus 124 ------~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 124 ------PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp ------GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred ------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999999887754 3899999999998654
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-37 Score=293.45 Aligned_cols=178 Identities=20% Similarity=0.216 Sum_probs=147.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|. +.. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~y~-~~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~ 54 (362)
T 2it1_A 3 EIKLENIVKKFG-NFT--------ALNNINLKIKDGEFMALL--------GPSGSGKSTLLYT-------I----AGIYK 54 (362)
T ss_dssp CEEEEEEEEESS-SSE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred EEEEEeEEEEEC-CEE--------EEEeeEEEECCCCEEEEE--------CCCCchHHHHHHH-------H----hcCCC
Confidence 489999999994 233 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++
T Consensus 55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~--- 130 (362)
T 2it1_A 55 PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRY--- 130 (362)
T ss_dssp CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCC---
T ss_pred CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhhCC---
Confidence 999998531 2467999999998875 6999999986421100 0001135678899999998776653
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 131 ------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 131 ------PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEAL 198 (362)
T ss_dssp ------GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred ------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 3899999999998764
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-37 Score=292.51 Aligned_cols=180 Identities=22% Similarity=0.226 Sum_probs=147.6
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|.+.... +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~i~~l~~~y~~~~~~-------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~ 56 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVV-------ALDNVNINIENGERFGIL--------GPSGAGKTTFMRI-------I----AGLDV 56 (353)
T ss_dssp CEEEEEEEEEEGGGTEE-------EEEEEEEEECTTCEEEEE--------CSCHHHHHHHHHH-------H----HTSSC
T ss_pred EEEEEeEEEEECCEeee-------eEeceEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence 48999999999532111 799999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400 156 LFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220 (298)
Q Consensus 156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 220 (298)
|++|+|.. +.+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+
T Consensus 57 p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~ 135 (353)
T 1oxx_K 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM-SKEEIRKRVEEVAKILDIHHVLN 135 (353)
T ss_dssp CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhc
Confidence 99999742 12457999999998875 5999999987432100 00011356888999999987776
Q ss_pred hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
++ +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 136 ~~---------~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 136 HF---------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205 (353)
T ss_dssp SC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred CC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 63 679999999999999999999999999999999999988888877654 4899999999998764
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-37 Score=292.60 Aligned_cols=178 Identities=20% Similarity=0.179 Sum_probs=143.7
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|.+ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+++
T Consensus 11 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~ 62 (372)
T 1v43_A 11 EVKLENLTKRFGN-FT--------AVNKLNLTIKDGEFLVLL--------GPSGCGKTTTLRM-------I----AGLEE 62 (372)
T ss_dssp CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred eEEEEEEEEEECC-EE--------EEeeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCC
Confidence 4899999999952 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++
T Consensus 63 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~--- 138 (372)
T 1v43_A 63 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNRY--- 138 (372)
T ss_dssp CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTSC---
T ss_pred CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhHhcCC---
Confidence 999998531 2457999999998775 6999999997532110 0001134678899999998877664
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 139 ------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 206 (372)
T 1v43_A 139 ------PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 206 (372)
T ss_dssp ------TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 689999999999999999999999999999999999999988877654 3899999999998764
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.5e-37 Score=279.68 Aligned_cols=180 Identities=23% Similarity=0.163 Sum_probs=145.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
.+++++||++.|++ .. +|+|+||+|++||+++|+ ||| || |+++ + +|++
T Consensus 20 ~~l~~~~l~~~y~~-~~--------vL~~isl~i~~Ge~~~li--------G~NGsGKSTLlk~-------l----~Gl~ 71 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG-KT--------ILKKISWQIAKGDKWILY--------GLNGAGKTTLLNI-------L----NAYE 71 (279)
T ss_dssp EEEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred ceEEEEeEEEEECC-EE--------EEEeeeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 36999999999953 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccC-------------CCcEEEEcCcCCC-CC--CCHHHHHccCCcch-hhhhcC--CCHHHHHHHHHHcCC
Q psy11400 155 PLFGGTVTKPP-------------RGKLFYVPQRPYM-TL--GTLRDQVIYPHTKE-DMIQKG--ITDADLTEYLQKVQL 215 (298)
Q Consensus 155 ~~~~G~i~~~~-------------r~~i~~v~Q~~~l-~~--~tv~eni~~~~~~~-~~~~~~--~~~~~i~~~l~~~~l 215 (298)
+|++|+|.... +++|+||||++.+ +. .|++||+.++.... ...... ...+++.++++.+++
T Consensus 72 ~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 151 (279)
T 2ihy_A 72 PATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM 151 (279)
T ss_dssp CCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC
Confidence 99999985321 3569999999854 43 39999998864210 000000 113467888999999
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEE--EEEecC
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITL--FTVSHR 290 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~Ti--IiitH~ 290 (298)
.++.+++ +.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++++ .|+|| |+|||+
T Consensus 152 ~~~~~~~---------~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 152 SAKAQQY---------IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp GGGTTSB---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred hhHhcCC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 7766553 679999999999999999999999999999999999999999888764 38999 999999
Q ss_pred cchhh
Q psy11400 291 KSLWT 295 (298)
Q Consensus 291 l~~~~ 295 (298)
++.+.
T Consensus 223 ~~~~~ 227 (279)
T 2ihy_A 223 IEEIT 227 (279)
T ss_dssp GGGCC
T ss_pred HHHHH
Confidence 98764
No 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.7e-37 Score=292.48 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=147.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++.|.+ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 3 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~ 54 (372)
T 1g29_1 3 GVRLVDVWKVFGE-VT--------AVREMSLEVKDGEFMILL--------GPSGCGKTTTLRM-------I----AGLEE 54 (372)
T ss_dssp EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTSSC
T ss_pred EEEEEeEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCcHHHHHHHH-------H----HcCCC
Confidence 4899999999952 33 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeec---------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400 156 LFGGTVTK---------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219 (298)
Q Consensus 156 ~~~G~i~~---------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 219 (298)
|++|+|.. +.+++||||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.
T Consensus 55 p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~ 133 (372)
T 1g29_1 55 PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELL 133 (372)
T ss_dssp CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGT
T ss_pred CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHh
Confidence 99999742 12457999999998764 6999999986421100 0001134678899999998777
Q ss_pred hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+++ +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 134 ~r~---------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 134 NRK---------PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204 (372)
T ss_dssp TCC---------GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred cCC---------cccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 663 689999999999999999999999999999999999999888877654 4899999999998764
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3e-37 Score=289.76 Aligned_cols=174 Identities=18% Similarity=0.230 Sum_probs=147.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|+++.|.+ . +|+|+||+|++||+++|+ ||| || |+++ + +|+.+
T Consensus 1 ml~~~~l~~~y~~--~--------~l~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~ 51 (348)
T 3d31_A 1 MIEIESLSRKWKN--F--------SLDNLSLKVESGEYFVIL--------GPTGAGKTLFLEL-------I----AGFHV 51 (348)
T ss_dssp CEEEEEEEEECSS--C--------EEEEEEEEECTTCEEEEE--------CCCTHHHHHHHHH-------H----HTSSC
T ss_pred CEEEEEEEEEECC--E--------EEeeeEEEEcCCCEEEEE--------CCCCccHHHHHHH-------H----HcCCC
Confidence 3789999999942 2 799999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400 156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225 (298)
Q Consensus 156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 225 (298)
|++|+|... .+++|+||||++.+|+ .|++||+.|+.... .....+++.++++.+++.++.+++
T Consensus 52 p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~----~~~~~~~v~~~l~~~~L~~~~~~~--- 124 (348)
T 3d31_A 52 PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK----KIKDPKRVLDTARDLKIEHLLDRN--- 124 (348)
T ss_dssp CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH----CCCCHHHHHHHHHHTTCTTTTTSC---
T ss_pred CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHcCCchHhcCC---
Confidence 999998632 1346999999998875 59999999864211 111226788999999998777663
Q ss_pred ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++ .|+|+|+|||+++.+.
T Consensus 125 ------~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 125 ------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192 (348)
T ss_dssp ------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred ------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 679999999999999999999999999999999999999988877654 4899999999988654
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.4e-37 Score=276.69 Aligned_cols=172 Identities=21% Similarity=0.249 Sum_probs=147.5
Q ss_pred cEEEeeeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400 80 LRGRLGITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ 152 (298)
Q Consensus 80 ~i~~~~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~ 152 (298)
+++++|+++.|+++ .. +|+|+||+|+ |++++|+ ||| || |+++ + +|
T Consensus 1 ml~~~~l~~~y~~~~~~~~--------il~~vsl~i~-Ge~~~i~--------G~NGsGKSTLlk~-------l----~G 52 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF--------SLENINLEVN-GEKVIIL--------GPNGSGKTTLLRA-------I----SG 52 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE--------EEEEEEEEEC-SSEEEEE--------CCTTSSHHHHHHH-------H----TT
T ss_pred CEEEEEEEEEeCCCCccce--------eEEeeeEEEC-CEEEEEE--------CCCCCCHHHHHHH-------H----hC
Confidence 37899999999631 33 8999999999 9999999 999 99 9999 8 99
Q ss_pred ccccCCceeecc--------CCCcEE-EEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhc
Q psy11400 153 LWPLFGGTVTKP--------PRGKLF-YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNRE 222 (298)
Q Consensus 153 l~~~~~G~i~~~--------~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~ 222 (298)
++ |++|+|... .+++|+ ||||++.+ ..|++||+.++... .....+++.++++.+++. +..+++
T Consensus 53 l~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~ 125 (263)
T 2pjz_A 53 LL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEEL-----KGLDRDLFLEMLKALKLGEEILRRK 125 (263)
T ss_dssp SS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHH-----TCCCHHHHHHHHHHTTCCGGGGGSB
T ss_pred CC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhh-----cchHHHHHHHHHHHcCCChhHhcCC
Confidence 99 999998532 145799 99999988 88999999874310 133467788999999998 766653
Q ss_pred CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+.+||||||||++|||||+++|+++||||||++||+.++..+.+.+++...|+|++||+++.+.
T Consensus 126 ---------~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 126 ---------LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp ---------GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred ---------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 6799999999999999999999999999999999999999999999875449999999998764
No 44
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.9e-36 Score=272.28 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=144.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++||++. . +|+|+||+|++|++++|+ ||| || |+++ + +|+++
T Consensus 4 ~l~~~~l~~~-----~--------vl~~vsl~i~~Ge~~~li--------G~NGsGKSTLlk~-------l----~Gl~~ 51 (249)
T 2qi9_C 4 VMQLQDVAES-----T--------RLGPLSGEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGMTS 51 (249)
T ss_dssp EEEEEEEEET-----T--------TEEEEEEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred EEEEEceEEE-----E--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence 5899999986 3 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccC-----------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400 156 LFGGTVTKPP-----------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223 (298)
Q Consensus 156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~ 223 (298)
|+ |+|.... +++|+||||++.++. .|++||+.++... ....+++.++++.+++.++.+++
T Consensus 52 p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~- 123 (249)
T 2qi9_C 52 GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD------KTRTELLNDVAGALALDDKLGRS- 123 (249)
T ss_dssp CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS------TTCHHHHHHHHHHTTCGGGTTSB-
T ss_pred CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc------CCcHHHHHHHHHHcCChhHhcCC-
Confidence 99 9986321 346999999998765 5999999986321 11266788999999998766553
Q ss_pred CcccccccCCCCChhHHHHHHHHHHHhcCCC-------EEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQ-------FAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~-------iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
+.+||||||||++|||||+.+|+ +|||||||++||+.++..+.+++++ .|+|+|++||+++.
T Consensus 124 --------~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 195 (249)
T 2qi9_C 124 --------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH 195 (249)
T ss_dssp --------GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred --------hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 67999999999999999999999 9999999999999999999888764 38999999999987
Q ss_pred hh
Q psy11400 294 WT 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 196 ~~ 197 (249)
T 2qi9_C 196 TL 197 (249)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 45
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.1e-37 Score=276.68 Aligned_cols=180 Identities=18% Similarity=0.160 Sum_probs=140.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-- 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-- 153 (298)
+++++||++.|++ .. +|+|+||+|++||+++|+ ||| || |+++ + +|+
T Consensus 3 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~l~--------G~nGsGKSTLlk~-------l----~Gl~~ 54 (250)
T 2d2e_A 3 QLEIRDLWASIDG-ET--------ILKGVNLVVPKGEVHALM--------GPNGAGKSTLGKI-------L----AGDPE 54 (250)
T ss_dssp EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTCTT
T ss_pred eEEEEeEEEEECC-EE--------EEeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 5899999999953 33 999999999999999999 999 99 9999 8 888
Q ss_pred cccCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcC--CCHHHHHHHHHHcCCc-h
Q psy11400 154 WPLFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKG--ITDADLTEYLQKVQLG-Y 217 (298)
Q Consensus 154 ~~~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~--~~~~~i~~~l~~~~l~-~ 217 (298)
++|++|+|.... +..++|+||+|.++. .|++||+.++.......... ...+++.++++.+++. +
T Consensus 55 ~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 134 (250)
T 2d2e_A 55 YTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES 134 (250)
T ss_dssp CEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG
T ss_pred CCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh
Confidence 789999985321 235899999998776 59999997642110000000 0134677889999994 5
Q ss_pred hhhhcCCcccccccCCC-CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400 218 ILNREKGWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL 293 (298)
Q Consensus 218 ~~~~~~g~d~~~~~~~~-LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~ 293 (298)
+.+++ +.+ |||||||||+|||||+++|++||||||||+||+.++..+.+++++ .|+|+|+|||+++.
T Consensus 135 ~~~~~---------~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 135 YLSRY---------LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205 (250)
T ss_dssp GGGSB---------TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred HhcCC---------cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 66553 567 999999999999999999999999999999999999999988865 37999999999988
Q ss_pred hhh
Q psy11400 294 WTH 296 (298)
Q Consensus 294 ~~~ 296 (298)
+..
T Consensus 206 ~~~ 208 (250)
T 2d2e_A 206 LNY 208 (250)
T ss_dssp GGT
T ss_pred HHH
Confidence 764
No 46
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.9e-36 Score=272.83 Aligned_cols=182 Identities=18% Similarity=0.196 Sum_probs=143.3
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
..+++++||++.|. +.. +|+|+||+|++|++++|+ ||| || |+++ + +|+
T Consensus 18 ~~~l~~~~l~~~y~-~~~--------vl~~vsl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------l----~Gl 69 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKA--------ILRGLSLDVHPGEVHAIM--------GPNGSGKSTLSAT-------L----AGR 69 (267)
T ss_dssp --CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTC
T ss_pred CceEEEEeEEEEEC-CEE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence 45799999999994 333 999999999999999999 999 99 9999 8 888
Q ss_pred --cccCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hhhcCCC----HHHHHHHHHH
Q psy11400 154 --WPLFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MIQKGIT----DADLTEYLQK 212 (298)
Q Consensus 154 --~~~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~----~~~i~~~l~~ 212 (298)
++|++|+|.... +..|+||||++.++. .|+.+|+.++..... ....... .+++.++++.
T Consensus 70 ~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (267)
T 2zu0_C 70 EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 149 (267)
T ss_dssp TTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHH
Confidence 578899985321 224999999998765 599999876321000 0000111 2457788999
Q ss_pred cCCc-hhhhhcCCcccccccCC-CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEE
Q psy11400 213 VQLG-YILNREKGWDTVADWID-VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTV 287 (298)
Q Consensus 213 ~~l~-~~~~~~~g~d~~~~~~~-~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIii 287 (298)
+++. ++.+++ +. +|||||||||+|||||+.+|++|||||||++||+.++..+.+++++. |+|+|+|
T Consensus 150 ~gl~~~~~~~~---------~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 150 LKMPEDLLTRS---------VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp TTCCTTTTTSB---------TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred cCCChhHhcCC---------cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9985 344442 44 59999999999999999999999999999999999999999998763 7999999
Q ss_pred ecCcchhhh
Q psy11400 288 SHRKSLWTH 296 (298)
Q Consensus 288 tH~l~~~~~ 296 (298)
||+++.+..
T Consensus 221 tHd~~~~~~ 229 (267)
T 2zu0_C 221 THYQRILDY 229 (267)
T ss_dssp CSSGGGGGT
T ss_pred eeCHHHHHh
Confidence 999987753
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.5e-35 Score=272.09 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=135.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++||++.+ .. +|+|+||+|++|++++|+ ||| || |+++ + +|++
T Consensus 39 ~~l~~~~l~~~~---~~--------vl~~isl~i~~Ge~~~i~--------G~NGsGKSTLlk~-------l----~Gl~ 88 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TP--------VLKDINFKIERGQLLAVA--------GSTGAGKTSLLMM-------I----MGEL 88 (290)
T ss_dssp -----------C---CC--------SEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----TTSS
T ss_pred ceEEEEEEEEcC---ce--------EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence 469999999853 33 899999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI 232 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~ 232 (298)
+|++|+|.... +|+||||++.+|..|++||+. +.. .....+.++++.+++.+.+++ +.++++..+ .+
T Consensus 89 ~p~~G~I~~~g--~i~~v~Q~~~l~~~tv~enl~-~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 157 (290)
T 2bbs_A 89 EPSEGKIKHSG--RISFCSQNSWIMPGTIKENII-GVS--------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157 (290)
T ss_dssp CEEEEEEECCS--CEEEECSSCCCCSSBHHHHHH-TTC--------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred CCCCcEEEECC--EEEEEeCCCccCcccHHHHhh-Ccc--------cchHHHHHHHHHhChHHHHHhccccccchhcCcc
Confidence 99999997643 699999999988889999998 431 122345566777788766554 334444333 56
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~ 296 (298)
.+||||||||++|||||+++|+++||||||++||+.++..+.+.+ ++ .++|+|+|||+++.+..
T Consensus 158 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 899999999999999999999999999999999999999999863 33 38999999999987654
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4.6e-31 Score=264.11 Aligned_cols=172 Identities=20% Similarity=0.150 Sum_probs=144.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|. .. .|+++||+|++||+++|+ ||| || |+++ + .|+.+
T Consensus 357 ~l~~~~l~~~~~--~~--------~l~~~~~~v~~Gei~~i~--------G~NGsGKSTLlk~-------l----~Gl~~ 407 (607)
T 3bk7_A 357 LVEYPRLVKDYG--SF--------KLEVEPGEIRKGEVIGIV--------GPNGIGKTTFVKM-------L----AGVEE 407 (607)
T ss_dssp EEEECCEEEECS--SC--------EEEECCEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred EEEEeceEEEec--ce--------EEEecccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence 689999999994 23 689999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCC
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV 234 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~ 234 (298)
|++|+|.. ..+|+|+||++.. +..|+.+++..... .. . ...+.+.++++.+++.++.+++ +.+
T Consensus 408 p~~G~I~~--~~~i~~v~Q~~~~~~~~tv~e~~~~~~~--~~--~-~~~~~~~~~l~~~~l~~~~~~~---------~~~ 471 (607)
T 3bk7_A 408 PTEGKVEW--DLTVAYKPQYIKAEYEGTVYELLSKIDS--SK--L-NSNFYKTELLKPLGIIDLYDRN---------VED 471 (607)
T ss_dssp CSBSCCCC--CCCEEEECSSCCCCCSSBHHHHHHHHHH--HH--H-HCHHHHHHTHHHHTCTTTTTSB---------GGG
T ss_pred CCceEEEE--eeEEEEEecCccCCCCCcHHHHHHhhhc--cC--C-CHHHHHHHHHHHcCCchHhcCC---------hhh
Confidence 99999875 4579999999865 56799998865210 00 0 1245677889999997666553 679
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 235 LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
|||||||||+|||||+.+|++|||||||++||+.....+.+++++ .|.|+|+|||+++.+..
T Consensus 472 LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999988888764 38999999999987753
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=5.3e-31 Score=260.54 Aligned_cols=173 Identities=20% Similarity=0.149 Sum_probs=143.5
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|. .. .++++||+|++||+++|+ ||| || |+++ + .|+.
T Consensus 286 ~~l~~~~l~~~~~--~~--------~l~~~~~~i~~Ge~~~i~--------G~NGsGKSTLlk~-------l----~Gl~ 336 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--SF--------RLEVEPGEIKKGEVIGIV--------GPNGIGKTTFVKM-------L----AGVE 336 (538)
T ss_dssp EEEEECCEEEEET--TE--------EEEECCEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----HTSS
T ss_pred eEEEEeeEEEEEC--CE--------EEEeCccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 3689999999984 23 689999999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~ 233 (298)
+|++|+|.. ..+|+|+||++.. +..|+.+++..... .. . ...+.+.++++.+++.+..+++ +.
T Consensus 337 ~p~~G~i~~--~~~i~~v~Q~~~~~~~~tv~~~~~~~~~--~~--~-~~~~~~~~~l~~~~l~~~~~~~---------~~ 400 (538)
T 1yqt_A 337 EPTEGKIEW--DLTVAYKPQYIKADYEGTVYELLSKIDA--SK--L-NSNFYKTELLKPLGIIDLYDRE---------VN 400 (538)
T ss_dssp CCSBCCCCC--CCCEEEECSSCCCCCSSBHHHHHHHHHH--HH--H-TCHHHHHHTTTTTTCGGGTTSB---------GG
T ss_pred CCCCeEEEE--CceEEEEecCCcCCCCCcHHHHHHhhhc--cC--C-CHHHHHHHHHHHcCChhhhcCC---------hh
Confidence 999999875 4579999999865 56799888764200 00 1 1245577788888886655543 67
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+|||+++.+..
T Consensus 401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999998888764 48999999999987753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.1e-30 Score=258.15 Aligned_cols=175 Identities=19% Similarity=0.164 Sum_probs=143.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++|+++.|.+ . .+.+.||+|++||+++|+ ||| || |+++ + .|+.
T Consensus 268 ~~l~~~~l~~~~~~--~--------~l~~~~~~i~~Gei~~i~--------G~nGsGKSTLl~~-------l----~Gl~ 318 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--F--------QLVVDNGEAKEGEIIGIL--------GPNGIGKTTFARI-------L----VGEI 318 (538)
T ss_dssp EEEEECCEEEEETT--E--------EEEECCEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred ceEEEcceEEEECC--E--------EEEeccceECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence 35889999999852 3 688889999999999999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~ 233 (298)
+|++|+|... ...++|+||++.. +..|+++|+.+..... .......+.++++.+++.++.++ .+.
T Consensus 319 ~p~~G~i~~~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~---------~~~ 384 (538)
T 3ozx_A 319 TADEGSVTPE-KQILSYKPQRIFPNYDGTVQQYLENASKDA----LSTSSWFFEEVTKRLNLHRLLES---------NVN 384 (538)
T ss_dssp CCSBCCEESS-CCCEEEECSSCCCCCSSBHHHHHHHHCSST----TCTTSHHHHHTTTTTTGGGCTTS---------BGG
T ss_pred CCCCcEEEEC-CeeeEeechhcccccCCCHHHHHHHhhhhc----cchhHHHHHHHHHHcCCHHHhcC---------Chh
Confidence 9999999754 4579999999864 4679999987532110 01123456777888888765554 378
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+|||||||||+|||||+.+|++|||||||++||+.+...+++++++ .|+|||+|||+++.+..
T Consensus 385 ~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999988887754 48999999999987754
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.6e-29 Score=262.45 Aligned_cols=182 Identities=19% Similarity=0.231 Sum_probs=144.4
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
+++++|++|.|+++..+ +|+|+||+|++|++++|+ ||| || |+++ | .|+.+
T Consensus 671 mL~v~nLs~~Y~g~~~~-------iL~dVSl~I~~GeivaIi--------GpNGSGKSTLLkl-------L----aGll~ 724 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKP-------QITDINFQCSLSSRIAVI--------GPNGAGKSTLINV-------L----TGELL 724 (986)
T ss_dssp EEEEEEEEECCTTCSSC-------SEEEEEEEEETTCEEEEC--------SCCCHHHHHHHHH-------H----TTSSC
T ss_pred eEEEEeeEEEeCCCCce-------eeeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 69999999999743222 899999999999999999 999 99 9999 8 99999
Q ss_pred cCCceeeccCCCcEEEEcCcCCC-----CCCCHHHHHccCCc--------------------------------------
Q psy11400 156 LFGGTVTKPPRGKLFYVPQRPYM-----TLGTLRDQVIYPHT-------------------------------------- 192 (298)
Q Consensus 156 ~~~G~i~~~~r~~i~~v~Q~~~l-----~~~tv~eni~~~~~-------------------------------------- 192 (298)
|++|+|......+|+|++|++.. ...|+++++.+...
T Consensus 725 P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~ 804 (986)
T 2iw3_A 725 PTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804 (986)
T ss_dssp CSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEE
T ss_pred CCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhh
Confidence 99999987655579999998631 23466666532100
Q ss_pred ----------------------------c------hhh----------------------------hhcCCCHHHHHHHH
Q psy11400 193 ----------------------------K------EDM----------------------------IQKGITDADLTEYL 210 (298)
Q Consensus 193 ----------------------------~------~~~----------------------------~~~~~~~~~i~~~l 210 (298)
. .+. .......+++.+++
T Consensus 805 i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~L 884 (986)
T 2iw3_A 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHC 884 (986)
T ss_dssp EEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred hhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHH
Confidence 0 000 00012245677888
Q ss_pred HHcCCch-h-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400 211 QKVQLGY-I-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS 288 (298)
Q Consensus 211 ~~~~l~~-~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit 288 (298)
+.+++.. + .++ .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|||+||
T Consensus 885 e~lGL~~~~~~~~---------~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiIS 955 (986)
T 2iw3_A 885 SMLGLDPEIVSHS---------RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT 955 (986)
T ss_dssp HHTTCCHHHHHHS---------CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEEC
T ss_pred HHcCCCchhhcCC---------CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 8888864 3 333 2679999999999999999999999999999999999999999999998888999999
Q ss_pred cCcchhhh
Q psy11400 289 HRKSLWTH 296 (298)
Q Consensus 289 H~l~~~~~ 296 (298)
|+++.+..
T Consensus 956 HD~e~v~~ 963 (986)
T 2iw3_A 956 HSAEFTKN 963 (986)
T ss_dssp SCHHHHTT
T ss_pred CCHHHHHH
Confidence 99987653
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=8.5e-30 Score=254.92 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=135.4
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+|+++.|..... +++|+| +|++||+++|+ ||| || |+++ + +|+++|++|
T Consensus 95 ~~ls~~yg~~~~--------~l~~vs-~i~~Ge~~~Li--------G~NGsGKSTLlki-------L----~Gll~p~~G 146 (607)
T 3bk7_A 95 EDCVHRYGVNAF--------VLYRLP-IVKDGMVVGIV--------GPNGTGKTTAVKI-------L----AGQLIPNLC 146 (607)
T ss_dssp GSEEEECSTTCC--------EEECCC-CCCTTSEEEEE--------CCTTSSHHHHHHH-------H----TTSSCCCTT
T ss_pred CCeEEEECCCCe--------eeCCCC-CCCCCCEEEEE--------CCCCChHHHHHHH-------H----hCCCCCCCC
Confidence 899999953323 899999 99999999999 999 99 9999 8 999999999
Q ss_pred eee---------c-------------cCCCcEEEEcCcCC----CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400 160 TVT---------K-------------PPRGKLFYVPQRPY----MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213 (298)
Q Consensus 160 ~i~---------~-------------~~r~~i~~v~Q~~~----l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 213 (298)
++. . ..+..+++++|... ++.+|+.||+.... ..+++.++++.+
T Consensus 147 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----------~~~~~~~~L~~l 216 (607)
T 3bk7_A 147 EDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----------EVGKFEEVVKEL 216 (607)
T ss_dssp TTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----------CSSCHHHHHHHT
T ss_pred ccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----------HHHHHHHHHHHc
Confidence 851 0 01235889998743 33459999885421 123467889999
Q ss_pred CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11400 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR 290 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~ 290 (298)
++.++.+++ +.+|||||||||+|||||+++|++||||||||+||+.....+.+++++ .|+|+|+||||
T Consensus 217 gL~~~~~~~---------~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 217 ELENVLDRE---------LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp TCTTGGGSB---------GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCchhCCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 998776664 679999999999999999999999999999999999999888887765 38999999999
Q ss_pred cchhhh
Q psy11400 291 KSLWTH 296 (298)
Q Consensus 291 l~~~~~ 296 (298)
++.+..
T Consensus 288 l~~~~~ 293 (607)
T 3bk7_A 288 LAVLDY 293 (607)
T ss_dssp HHHHHH
T ss_pred hHHHHh
Confidence 987653
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-29 Score=253.63 Aligned_cols=170 Identities=21% Similarity=0.172 Sum_probs=137.5
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCC-----cEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA-----LNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g-----~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+++++.|+.... +++++||++.+| |+++|+ ||| || |+++ + +|+.
T Consensus 350 ~~~~~~y~~~~~--------~l~~vsl~v~~G~~~~GEiv~ii--------G~NGsGKSTLlk~-------l----~Gl~ 402 (608)
T 3j16_B 350 ASRAFSYPSLKK--------TQGDFVLNVEEGEFSDSEILVMM--------GENGTGKTTLIKL-------L----AGAL 402 (608)
T ss_dssp SSSCCEECCEEE--------ECSSCEEEECCEECCTTCEEEEE--------SCTTSSHHHHHHH-------H----HTSS
T ss_pred cceeEEecCccc--------ccCceEEEEecCccccceEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence 556777764333 789999999999 789999 999 99 9999 8 9999
Q ss_pred ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~ 233 (298)
+|++|+.. .+..++|+||++.. +..|+++++...... .......+.++++.+++.++.+++ +.
T Consensus 403 ~p~~G~~~--~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~-----~~~~~~~~~~~l~~l~l~~~~~~~---------~~ 466 (608)
T 3j16_B 403 KPDEGQDI--PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG-----QFLNPQFQTDVVKPLRIDDIIDQE---------VQ 466 (608)
T ss_dssp CCSBCCCC--CSCCEEEECSSCCCCCCSBHHHHHHHHCSS-----TTTSHHHHHHTHHHHTSTTTSSSB---------SS
T ss_pred CCCCCcCc--cCCcEEEecccccccCCccHHHHHHHHhhc-----ccccHHHHHHHHHHcCChhhhcCC---------hh
Confidence 99999742 24569999999754 567999987532210 112345667889999987665553 78
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~ 296 (298)
+|||||||||+|||||+.+|++|||||||+|||+.+...+.+++++ .|+|+|+|||+++.+..
T Consensus 467 ~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999888877654 48999999999987754
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.5e-29 Score=250.16 Aligned_cols=169 Identities=20% Similarity=0.185 Sum_probs=133.6
Q ss_pred EEE-eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 81 RGR-LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 81 i~~-~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++ +||++.|+.... +++|+| +|++||+++|+ ||| || |+++ + +|+++
T Consensus 21 ~~~~~~ls~~yg~~~~--------~l~~vs-~i~~Ge~~~Lv--------G~NGaGKSTLlk~-------l----~Gl~~ 72 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAF--------VLYRLP-VVKEGMVVGIV--------GPNGTGKSTAVKI-------L----AGQLI 72 (538)
T ss_dssp ---CCCEEEECSTTCC--------EEECCC-CCCTTSEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred hhHhcCcEEEECCccc--------cccCcC-cCCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence 455 589999964223 899999 99999999999 999 99 9999 8 99999
Q ss_pred cCCceee---------c-------------cCCCcEEEEcCcCCC----CCCCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400 156 LFGGTVT---------K-------------PPRGKLFYVPQRPYM----TLGTLRDQVIYPHTKEDMIQKGITDADLTEY 209 (298)
Q Consensus 156 ~~~G~i~---------~-------------~~r~~i~~v~Q~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~ 209 (298)
|++|++. . ..+..+++++|.... +.+|+.+++.... ..+++.++
T Consensus 73 p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----------~~~~~~~~ 142 (538)
T 1yqt_A 73 PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----------ETGKLEEV 142 (538)
T ss_dssp CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----------SSSCHHHH
T ss_pred CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----------HHHHHHHH
Confidence 9998841 0 012358899997532 2358888874311 12346788
Q ss_pred HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT 286 (298)
Q Consensus 210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi 286 (298)
++.+++.+..+++ +.+|||||||||+|||||+.+|++|||||||++||+.....+.+++++ .|+|||+
T Consensus 143 l~~lgl~~~~~~~---------~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 143 VKALELENVLERE---------IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp HHHTTCTTTTTSB---------GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCChhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999997665553 679999999999999999999999999999999999998888887764 3899999
Q ss_pred EecCcchhhh
Q psy11400 287 VSHRKSLWTH 296 (298)
Q Consensus 287 itH~l~~~~~ 296 (298)
||||++.+..
T Consensus 214 vsHd~~~~~~ 223 (538)
T 1yqt_A 214 VEHDLAVLDY 223 (538)
T ss_dssp ECSCHHHHHH
T ss_pred EeCCHHHHHH
Confidence 9999987653
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=6.8e-27 Score=242.81 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=134.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc-ccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD-QLW 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~-~l~ 154 (298)
.+...|+++.|+ +.. +|+|+||+|++|++++|+ ||| || |+++ + . |-.
T Consensus 435 ~L~~~~ls~~yg-~~~--------iL~~vsl~I~~Ge~v~Li--------GpNGsGKSTLLk~-------L----agG~i 486 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKI--------LLNKTQLRLKRARRYGIC--------GPNGCGKSTLMRA-------I----ANGQV 486 (986)
T ss_dssp EEEEEEEEEEET-TEE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HHTCS
T ss_pred eeEEeeEEEEEC-CEE--------eEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence 477779999995 334 899999999999999999 999 99 9998 6 3 211
Q ss_pred ccCCceeeccCCCcEEEEcCcC-CC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcCCccccccc
Q psy11400 155 PLFGGTVTKPPRGKLFYVPQRP-YM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKGWDTVADW 231 (298)
Q Consensus 155 ~~~~G~i~~~~r~~i~~v~Q~~-~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~ 231 (298)
.|. ......+++|++|++ .+ ...|+.+|+.+.. ... .+++.++++.+++. +..+++
T Consensus 487 ---~g~-~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~-------~~~-~~~v~~~L~~lgL~~~~~~~~--------- 545 (986)
T 2iw3_A 487 ---DGF-PTQEECRTVYVEHDIDGTHSDTSVLDFVFESG-------VGT-KEAIKDKLIEFGFTDEMIAMP--------- 545 (986)
T ss_dssp ---TTC-CCTTTSCEEETTCCCCCCCTTSBHHHHHHTTC-------SSC-HHHHHHHHHHTTCCHHHHHSB---------
T ss_pred ---CCC-ccccceeEEEEcccccccccCCcHHHHHHHhh-------cCH-HHHHHHHHHHcCCChhhhcCC---------
Confidence 111 001122478999985 33 4569999997621 112 67788999999995 556554
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
+.+||||||||++|||||+.+|++|||||||++||+.....+.+++++.|.|+|+|||+++.+..
T Consensus 546 ~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDN 610 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 67999999999999999999999999999999999999999999998778999999999987753
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=2.5e-27 Score=239.87 Aligned_cols=173 Identities=20% Similarity=0.183 Sum_probs=103.4
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--ee-------------ecCccCccccccccccccccCCceee----
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LF-------------YVPQRPYMTLGTLRDQLWPLFGGTVT---- 162 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~-------------~~~~~~~~~l~~~~~~l~~~~~G~i~---- 162 (298)
+|+|+||+|++||+++|+ ||| || |+ +++... +..+.+++..|+.|.+.
T Consensus 33 ~L~~vsl~i~~Ge~~~li--------GpNGaGKSTLl~~~~~~~~~~~~~~~l~~~---~~~~l~~l~~~~~~~i~~~~~ 101 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLT--------GLSGSGKSSLAFDTIYAEGQRRYVESLSAY---ARQFLGQMEKPDVDAIEGLSP 101 (670)
T ss_dssp TCCSEEEEEETTSEEEEE--------CSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCC
T ss_pred ceeccEEEECCCCEEEEE--------CCCCCCHHHHhcccccccccccccccchhh---hhhhhcccccCCccceecccc
Confidence 899999999999999999 999 99 64 110000 01112777777754432
Q ss_pred ---c-------cCCCcEEEEcCcCCC--------------------CCCCHHHHHccCCcchhh-hhcCCCH------HH
Q psy11400 163 ---K-------PPRGKLFYVPQRPYM--------------------TLGTLRDQVIYPHTKEDM-IQKGITD------AD 205 (298)
Q Consensus 163 ---~-------~~r~~i~~v~Q~~~l--------------------~~~tv~eni~~~~~~~~~-~~~~~~~------~~ 205 (298)
. ..+..+++|+|.+.+ +..|+.||+.+....... ....... .+
T Consensus 102 ~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (670)
T 3ux8_A 102 AISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD 181 (670)
T ss_dssp EEEESSCC-----CCBHHHHTTCC-------------------------CC--------------------------CHH
T ss_pred ceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 1 123456666665432 235888888764211000 0000000 11
Q ss_pred HHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHh---
Q psy11400 206 LTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCRE--- 279 (298)
Q Consensus 206 i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~--- 279 (298)
..++++.+++.+. .++ .+.+|||||||||+|||||+.+|+ +|||||||++||+.....+.+++++
T Consensus 182 ~~~~l~~~gL~~~~~~~---------~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~ 252 (670)
T 3ux8_A 182 RLGFLQNVGLDYLTLSR---------SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD 252 (670)
T ss_dssp HHHHHHHTTCTTCCTTC---------BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhcC---------CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 1234677777543 233 367999999999999999999998 9999999999999999888887654
Q ss_pred cCcEEEEEecCcchhhh
Q psy11400 280 VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 280 ~~~TiIiitH~l~~~~~ 296 (298)
.|+|||+|||+++.+..
T Consensus 253 ~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 253 LGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TTCEEEEECCCHHHHHH
T ss_pred cCCEEEEEeCCHHHHhh
Confidence 48999999999987654
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-26 Score=232.39 Aligned_cols=167 Identities=20% Similarity=0.215 Sum_probs=124.7
Q ss_pred eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
|++++|..... .+++++ .+++||+++|+ ||| || |+++ | +|+.+|++|+
T Consensus 82 ~~~~~Y~~~~~--------~l~~l~-~~~~Gei~~Lv--------GpNGaGKSTLLki-------L----~Gll~P~~G~ 133 (608)
T 3j16_B 82 HVTHRYSANSF--------KLHRLP-TPRPGQVLGLV--------GTNGIGKSTALKI-------L----AGKQKPNLGR 133 (608)
T ss_dssp TEEEECSTTSC--------EEECCC-CCCTTSEEEEE--------CCTTSSHHHHHHH-------H----HTSSCCCTTT
T ss_pred CeEEEECCCce--------eecCCC-CCCCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCCCCCce
Confidence 56777754433 677777 68999999999 999 99 9999 8 9999999998
Q ss_pred eeccC----------------------CCc--EEEEcCcCCC----C---CCCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400 161 VTKPP----------------------RGK--LFYVPQRPYM----T---LGTLRDQVIYPHTKEDMIQKGITDADLTEY 209 (298)
Q Consensus 161 i~~~~----------------------r~~--i~~v~Q~~~l----~---~~tv~eni~~~~~~~~~~~~~~~~~~i~~~ 209 (298)
+.... ... ..+.+|.... . ..++.+++... .....+++.++
T Consensus 134 i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--------~~~~~~~~~~~ 205 (608)
T 3j16_B 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--------MEKSPEDVKRY 205 (608)
T ss_dssp TCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--------CCSCHHHHHHH
T ss_pred EecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--------hhhHHHHHHHH
Confidence 73110 011 1233332210 0 01333333211 12345678899
Q ss_pred HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT 286 (298)
Q Consensus 210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi 286 (298)
++.+++.+..+++ +.+|||||||||+|||||+++|++||||||||+||+.....+.+++++ .|+|+|+
T Consensus 206 l~~~gl~~~~~~~---------~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 206 IKILQLENVLKRD---------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp HHHHTCTGGGGSC---------TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred HHHcCCcchhCCC---------hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999998777664 689999999999999999999999999999999999999998888765 3899999
Q ss_pred EecCcchhhh
Q psy11400 287 VSHRKSLWTH 296 (298)
Q Consensus 287 itH~l~~~~~ 296 (298)
|||+++.+..
T Consensus 277 vtHdl~~~~~ 286 (608)
T 3j16_B 277 VEHDLSVLDY 286 (608)
T ss_dssp ECSCHHHHHH
T ss_pred EeCCHHHHHH
Confidence 9999987654
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.4e-26 Score=228.68 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=118.3
Q ss_pred eeeeeEEE-eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee-----------cc----
Q psy11400 105 FFDYMFGV-RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT-----------KP---- 164 (298)
Q Consensus 105 l~~isl~i-~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~-----------~~---- 164 (298)
++-..|.+ ++||+++|+ ||| || |+++ + +|+++|++|++. ..
T Consensus 14 f~l~~l~~~~~Gei~gLi--------GpNGaGKSTLlki-------L----~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVL--------GKNGVGKTTVLKI-------L----AGEIIPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEECCCCCCTTEEEEEE--------CCTTSSHHHHHHH-------H----TTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred eeecCCCCCCCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCCCCCccccccchhhHHhhcCCeeH
Confidence 33344444 599999999 999 99 9999 8 999999999872 10
Q ss_pred ---------CCCcEEEEcCc----CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400 165 ---------PRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231 (298)
Q Consensus 165 ---------~r~~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~ 231 (298)
....+...+|. +.++.+++.+++.... ..+++.++++.+++..+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~l~~l~l~~~~~~~--------- 135 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----------ERGKKDEVKELLNMTNLWNKD--------- 135 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC----------CSSCHHHHHHHTTCGGGTTSB---------
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch----------hHHHHHHHHHHcCCchhhcCC---------
Confidence 11224444443 3445568877654211 123467888999998766553
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
+.+|||||||||+|||||+.+|++||||||||+||+.....+.+++++. |+|||+||||++.+..
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 6799999999999999999999999999999999999999988887753 8999999999987653
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.4e-24 Score=218.07 Aligned_cols=100 Identities=29% Similarity=0.341 Sum_probs=76.6
Q ss_pred CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEE
Q psy11400 181 GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFA 256 (298)
Q Consensus 181 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~il 256 (298)
.|+.||+.+.... ....+..+.+..+++.+. .++ .+.+|||||||||+|||||+++| ++|
T Consensus 505 ltv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSgG~~qrv~iAraL~~~p~~p~ll 568 (670)
T 3ux8_A 505 MTVEDALDFFASI-------PKIKRKLETLYDVGLGYMKLGQ---------PATTLSGGEAQRVKLAAELHRRSNGRTLY 568 (670)
T ss_dssp SBHHHHHHHTTTC-------HHHHHHHHHHHHTTCTTSBTTC---------CGGGCCHHHHHHHHHHHHHHSCCCSCEEE
T ss_pred CCHHHHHHHHHHh-------hhHHHHHHHHHHcCCchhhccC---------CchhCCHHHHHHHHHHHHHhhCCCCCcEE
Confidence 4677777654311 112345667777777532 222 46899999999999999999887 499
Q ss_pred EEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 257 ILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 257 iLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
||||||+|||+.+...+.+++++ .|+|||+|||+++.+..
T Consensus 569 llDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~ 611 (670)
T 3ux8_A 569 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT 611 (670)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh
Confidence 99999999999999988887654 48999999999988754
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=5e-23 Score=213.31 Aligned_cols=86 Identities=27% Similarity=0.369 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh-
Q psy11400 204 ADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE- 279 (298)
Q Consensus 204 ~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~- 279 (298)
.+..++++.+++.+.. ....+.+|||||||||+|||||+++| ++|||||||+|||+..++.+++.+++
T Consensus 783 ~~~~~~L~~vGL~~~~--------lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVK--------LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHHHTTGGGSB--------TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhh--------ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3456778888875421 12246899999999999999999876 79999999999999999999888764
Q ss_pred --cCcEEEEEecCcchhhhc
Q psy11400 280 --VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 280 --~~~TiIiitH~l~~~~~~ 297 (298)
.|.|||+|||++++++..
T Consensus 855 ~~~G~TVIvI~HdL~~i~~A 874 (916)
T 3pih_A 855 VDRGNTVIVIEHNLDVIKNA 874 (916)
T ss_dssp HHTTCEEEEECCCHHHHTTC
T ss_pred HhcCCEEEEEeCCHHHHHhC
Confidence 489999999999988753
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=3.8e-22 Score=205.22 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC---CCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 204 ADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR---PQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 204 ~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~---P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
.++.++++.++|.+. .++ .+.+|||||||||+|||+|+++ |+++||||||+|||+.....+++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~---------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 778 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQ---------PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK 778 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTC---------CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccC---------CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 345677888887652 233 3679999999999999999996 799999999999999999998887654
Q ss_pred ---cCcEEEEEecCcchhhh
Q psy11400 280 ---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 280 ---~~~TiIiitH~l~~~~~ 296 (298)
.|.|||+|||+++.++.
T Consensus 779 L~~~G~tVIvisHdl~~i~~ 798 (842)
T 2vf7_A 779 LVDAGNTVIAVEHKMQVVAA 798 (842)
T ss_dssp HHHTTCEEEEECCCHHHHTT
T ss_pred HHhCCCEEEEEcCCHHHHHh
Confidence 48999999999998753
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.9e-25 Score=212.83 Aligned_cols=152 Identities=12% Similarity=0.057 Sum_probs=118.6
Q ss_pred eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc-e-eec--cCCCcEEEEcCcCC
Q psy11400 106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG-T-VTK--PPRGKLFYVPQRPY 177 (298)
Q Consensus 106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G-~-i~~--~~r~~i~~v~Q~~~ 177 (298)
.++||++++|++++|+ ||| || |+|+ | +|+++|++| + |.. ..++.++|+||++.
T Consensus 129 ~~vsl~i~~Ge~v~Iv--------GpnGsGKSTLlr~-------L----~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIV--------GGSQTGKTSLSRT-------L----CSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp HHHHHHSSSCCCEEEE--------ESTTSSHHHHHHH-------H----HHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred hcCceEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 3688999999999999 999 99 9999 8 999999999 8 754 34678999999984
Q ss_pred C----CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH--Hhc
Q psy11400 178 M----TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL--FYH 251 (298)
Q Consensus 178 l----~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa--L~~ 251 (298)
+ ...|+++|+ ++..... .....+.+.++++.+++.+.. + +.+|||||||||++||| |+.
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~---~~~~~~~~~~ll~~~gl~~~~----------~-~~~LSgGq~qrlalAra~rL~~ 254 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTS---GATLLHNKQPMVKNFGLERIN----------E-NKDLYLECISQLGQVVGQRLHL 254 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBS---SCCSSCCBCCEECCCCSSSGG----------G-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhh-ccccccc---CcchHHHHHHHHHHhCCCccc----------c-hhhhhHHHHHHHHHHHHHHhcc
Confidence 3 235899888 6542100 001112233445555554332 1 56899999999999999 999
Q ss_pred CCCE----EEEec-cccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 252 RPQF----AILDE-CTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 252 ~P~i----liLDE-PTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
+|++ +|||| ||++||+. .+.+.+++++.++|+|+|+|+.+
T Consensus 255 ~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 255 DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred CcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 9999 99999 99999999 77788888888999999999987
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=4.5e-22 Score=205.65 Aligned_cols=83 Identities=33% Similarity=0.404 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh-
Q psy11400 205 DLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE- 279 (298)
Q Consensus 205 ~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~- 279 (298)
+..++++.++|.+ ..++ .+.+|||||||||+|||+|+++| +++||||||+|||+.....+++++++
T Consensus 824 ~~~~~L~~~gL~~~~l~~---------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 894 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQ---------PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 894 (972)
T ss_dssp HHHHHHHHTTCSSSBTTC---------CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccC---------chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3456778888765 3333 36799999999999999999875 99999999999999999998887754
Q ss_pred --cCcEEEEEecCcchhhh
Q psy11400 280 --VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 280 --~~~TiIiitH~l~~~~~ 296 (298)
.|.|||+|||+++.++.
T Consensus 895 ~~~G~TVIvisHdl~~i~~ 913 (972)
T 2r6f_A 895 VDNGDTVLVIEHNLDVIKT 913 (972)
T ss_dssp HHTTCEEEEECCCHHHHTT
T ss_pred HhCCCEEEEEcCCHHHHHh
Confidence 48999999999987754
No 64
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.9e-25 Score=205.93 Aligned_cols=185 Identities=19% Similarity=0.187 Sum_probs=142.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCCCC
Q psy11400 18 AEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGF 97 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 97 (298)
..++..+...+..++++..+..|+.++++...+..... . ......+.|+++||+|.|+ ..
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--------------~--~~~~~~~~i~~~~vs~~y~--~~-- 114 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--------------G--SWKSILTFFNYQNIELITF--IN-- 114 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--------------C--CTHHHHHHHHHTTCCHHHH--HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--------------C--cccccCCeEEEEEEEEEcC--hh--
Confidence 47788888888999999999999999998765432100 0 0001123588999999996 33
Q ss_pred CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEc
Q psy11400 98 DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVP 173 (298)
Q Consensus 98 ~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~ 173 (298)
+|+++||+|++|++++|+ ||| || |+++ | .|++ +|+| ++|++
T Consensus 115 ------vL~~vsl~i~~Ge~vaIv--------GpsGsGKSTLl~l-------L----~gl~---~G~I-------~~~v~ 159 (305)
T 2v9p_A 115 ------ALKLWLKGIPKKNCLAFI--------GPPNTGKSMLCNS-------L----IHFL---GGSV-------LSFAN 159 (305)
T ss_dssp ------HHHHHHHTCTTCSEEEEE--------CSSSSSHHHHHHH-------H----HHHH---TCEE-------ECGGG
T ss_pred ------hhccceEEecCCCEEEEE--------CCCCCcHHHHHHH-------H----hhhc---CceE-------EEEec
Confidence 999999999999999999 999 99 9999 8 8887 8888 56899
Q ss_pred CcCCCCCCCHHH-HHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400 174 QRPYMTLGTLRD-QVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252 (298)
Q Consensus 174 Q~~~l~~~tv~e-ni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~ 252 (298)
|++.+|.+|+++ |+.+... .++ .+.+.++.+ + +.|++ +..|||||||| ||||+++
T Consensus 160 q~~~lf~~ti~~~ni~~~~~--------~~~-~~~~~i~~~-L------~~gld-----g~~LSgGqkQR---ARAll~~ 215 (305)
T 2v9p_A 160 HKSHFWLASLADTRAALVDD--------ATH-ACWRYFDTY-L------RNALD-----GYPVSIDRKHK---AAVQIKA 215 (305)
T ss_dssp TTSGGGGGGGTTCSCEEEEE--------ECH-HHHHHHHHT-T------TGGGG-----TCCEECCCSSC---CCCEECC
T ss_pred CccccccccHHHHhhccCcc--------ccH-HHHHHHHHH-h------HccCC-----ccCcCHHHHHH---HHHHhCC
Confidence 999999999997 8887421 122 445555543 2 22333 67899999999 9999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400 253 PQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 253 P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~ 296 (298)
|++|| ||+||+.++..+.. +|||++.+++
T Consensus 216 p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~~~ 244 (305)
T 2v9p_A 216 PPLLV----TSNIDVQAEDRYLY-----------LHSRVQTFRF 244 (305)
T ss_dssp CCEEE----EESSCSTTCGGGGG-----------GTTTEEEEEC
T ss_pred CCEEE----ECCCCHHHHHHHHH-----------HhCCHHHHHh
Confidence 99999 99999998887753 2788776554
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=8.7e-22 Score=204.11 Aligned_cols=82 Identities=30% Similarity=0.371 Sum_probs=68.4
Q ss_pred HHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh--
Q psy11400 206 LTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE-- 279 (298)
Q Consensus 206 i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~-- 279 (298)
..++++.++|.+ ..++ .+.+|||||||||+|||+|+++| +++||||||+|||+.....+.+++++
T Consensus 843 ~~~~L~~lgL~~~~l~~---------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~ 913 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQ---------PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLV 913 (993)
T ss_dssp HHHHHHHTTGGGSBTTC---------CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccC---------ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 456777777754 2333 36799999999999999999875 99999999999999999998887754
Q ss_pred -cCcEEEEEecCcchhhh
Q psy11400 280 -VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 280 -~~~TiIiitH~l~~~~~ 296 (298)
.|.|||+|||+++.++.
T Consensus 914 ~~G~TVIvisHdl~~i~~ 931 (993)
T 2ygr_A 914 DKGNTVIVIEHNLDVIKT 931 (993)
T ss_dssp HTTCEEEEECCCHHHHTT
T ss_pred hCCCEEEEEcCCHHHHHh
Confidence 48999999999988754
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=4.8e-24 Score=186.53 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=88.9
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------cCCCcEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------PPRGKLFY 171 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------~~r~~i~~ 171 (298)
+|+|+ ++|++++|+ ||| || |+++ + +|+ +|++|+|.. ..+++++|
T Consensus 15 ~l~~i----~~Ge~~~li--------G~nGsGKSTLl~~-------l----~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~ 70 (208)
T 3b85_A 15 YVDAI----DTNTIVFGL--------GPAGSGKTYLAMA-------K----AVQ-ALQSKQVSRIILTRPAVEAGEKLGF 70 (208)
T ss_dssp HHHHH----HHCSEEEEE--------CCTTSSTTHHHHH-------H----HHH-HHHTTSCSEEEEEECSCCTTCCCCS
T ss_pred HHHhc----cCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC-CCcCCeeeeEEecCCchhhhcceEE
Confidence 88885 899999999 999 99 9999 8 999 999999742 23567999
Q ss_pred EcCcCCCCCCCHHHHH-ccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHh
Q psy11400 172 VPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY 250 (298)
Q Consensus 172 v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~ 250 (298)
+||++ +||+ .+..............+.+.++++. +.|||||++|||||+
T Consensus 71 v~q~~-------~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------glGq~qrv~lAraL~ 120 (208)
T 3b85_A 71 LPGTL-------NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-----------------------GIVEVAPLAYMRGRT 120 (208)
T ss_dssp SCC-------------CTTTHHHHHHHTTTSCTTHHHHHHHT-----------------------TSEEEEEGGGGTTCC
T ss_pred ecCCH-------HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-----------------------CCchHHHHHHHHHHh
Confidence 99987 5666 3321000000000111223333221 129999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT 295 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~ 295 (298)
.+|++|||||||++ +...+.+++++ .|+|+| +||+++.+.
T Consensus 121 ~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 121 LNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp BCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred cCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 99999999999999 66677777765 378999 999998764
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.84 E-value=4.9e-21 Score=182.43 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=57.8
Q ss_pred CChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 235 LSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 235 LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
|||||||||+|||+|+.+| ++|||||||++||+.....+.+.+++. ++|||+|||+++++..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 7999999999999999999 999999999999999999999998874 7999999999987653
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.83 E-value=2.4e-22 Score=169.86 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=56.2
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHH----------------HHHHHHHHH---HhcCcEEEEEecCc
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----------------VEGSMYEYC---REVGITLFTVSHRK 291 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~----------------~~~~i~~~l---~~~~~TiIiitH~l 291 (298)
.....|+|||||++||||++.+|++++|||||++||+. ....+.+.+ ++.|.|+|+|||++
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 34567999999999999999999999999999999998 446677663 33499999999999
Q ss_pred chhhh
Q psy11400 292 SLWTH 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
+.+..
T Consensus 160 ~~~~~ 164 (171)
T 4gp7_A 160 EEVEE 164 (171)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87754
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.75 E-value=1.9e-18 Score=160.06 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=58.5
Q ss_pred cCCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
.+..||+|||||++|||||+ .+|+++||||||++||+...+.+.+.+++. +.|+|+|||+.++...
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~ 287 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA 287 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhh
Confidence 45789999999999999997 689999999999999999999999888764 7899999999876543
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.75 E-value=2.3e-21 Score=185.44 Aligned_cols=150 Identities=12% Similarity=0.011 Sum_probs=115.6
Q ss_pred ceeeeeEEEeCCc--------------------EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400 104 SFFDYMFGVRGAL--------------------NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG 159 (298)
Q Consensus 104 ~l~~isl~i~~g~--------------------~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G 159 (298)
+++++||++++|+ +++|+ |+| || |+++ + .|+.+|++|
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valv--------G~nGaGKSTLln~-------L----~Gl~~p~~G 98 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVT--------GETGSGKSSFINT-------L----RGIGNEEEG 98 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEE--------ECTTSSHHHHHHH-------H----HTCCTTSTT
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEE--------CCCCCcHHHHHHH-------H----hCCCCccCc
Confidence 8999999999999 99999 999 99 9999 8 999999999
Q ss_pred eeeccCC--CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCCh
Q psy11400 160 TVTKPPR--GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237 (298)
Q Consensus 160 ~i~~~~r--~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSg 237 (298)
++..... .+.++++|++..+..|+.|++.++. . ...+.++++.+++.+... ... ||+
T Consensus 99 sI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~-------~---~~~~~~~L~~~~L~~~~~----------~~~-lS~ 157 (413)
T 1tq4_A 99 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS-------T---NFPPDTYLEKMKFYEYDF----------FII-ISA 157 (413)
T ss_dssp SCCCCC----CCCEEEECSSCTTEEEEECCCGGG-------S---SCCHHHHHHHTTGGGCSE----------EEE-EES
T ss_pred eEEECCeecceeEEeccccccCCeeehHhhcccc-------h---HHHHHHHHHHcCCCccCC----------eEE-eCC
Confidence 9864321 1137899997655668888765532 1 123677888888754211 122 999
Q ss_pred h--HHHHHHHHHHHhc----------CCCEEEEeccccCCCHHHHHHHHHHHHh--------c----CcEEEEEecCcch
Q psy11400 238 G--EKQRVAMARLFYH----------RPQFAILDECTSAVSVDVEGSMYEYCRE--------V----GITLFTVSHRKSL 293 (298)
Q Consensus 238 G--qkQRlaiARaL~~----------~P~iliLDEPTs~LD~~~~~~i~~~l~~--------~----~~TiIiitH~l~~ 293 (298)
| ||||++|||||.+ +|++++|||||++||+..+..+.+.+++ . ..+++++||.++.
T Consensus 158 G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 158 TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred CCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 9 9999999999999 9999999999999999877666554432 1 2578899998764
No 71
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.73 E-value=9.2e-18 Score=139.03 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=58.0
Q ss_pred cCCCCChhHHHHHHHH------HHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400 231 WIDVLSGGEKQRVAMA------RLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT 295 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiA------RaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~ 295 (298)
.+.+||||||||++|| |||+.+|+++||||||++||+.....+.+.+++ .+.|+|+|||+.....
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~ 127 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 127 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH
Confidence 5689999999999876 999999999999999999999999999988765 3789999999986544
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.70 E-value=1.8e-18 Score=147.40 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=57.3
Q ss_pred cCCCCChhHHHHHHHHHH-----HhcCCCEEEEec--cccCCCHHHHHHHHHHHHhcCcEEEEEec---Ccchh
Q psy11400 231 WIDVLSGGEKQRVAMARL-----FYHRPQFAILDE--CTSAVSVDVEGSMYEYCREVGITLFTVSH---RKSLW 294 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARa-----L~~~P~iliLDE--PTs~LD~~~~~~i~~~l~~~~~TiIiitH---~l~~~ 294 (298)
++.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+++.+.|+|+++| +...+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHH
Confidence 467899999999999996 999999999999 99999999999999999887788999986 55544
No 73
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.68 E-value=4.9e-20 Score=170.46 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=118.1
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEE-----------------------EeCCcEEEEeccCCcccCCCC--
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFG-----------------------VRGALNLLWPLFGGTVTKPPR-- 132 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~-----------------------i~~g~~~~i~~~~~~~~~G~s-- 132 (298)
++.|+++||++.|. + +++++++. +++|++++|+ |||
T Consensus 41 ~~~i~~~~v~~~y~---p--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~--------G~sGs 101 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---P--------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVA--------GSVAV 101 (312)
T ss_dssp TCCCCHHHHHHTHH---H--------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEE--------CCTTS
T ss_pred CCeEEeeehhhhhh---h--------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEE--------CCCCc
Confidence 45689999999993 2 66766664 8999999999 999
Q ss_pred cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400 133 GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210 (298)
Q Consensus 133 GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l 210 (298)
|| |+++ | .|+++|+.|. .++++|+|+++++..|+++|+.+.... .. ......+.+.+.+
T Consensus 102 GKSTL~~~-------L----~gll~~~~G~------~~v~~v~qd~~~~~~t~~e~~~~~~~~-g~-~~~~d~~~~~~~L 162 (312)
T 3aez_A 102 GKSTTARV-------L----QALLARWDHH------PRVDLVTTDGFLYPNAELQRRNLMHRK-GF-PESYNRRALMRFV 162 (312)
T ss_dssp CHHHHHHH-------H----HHHHHTSTTC------CCEEEEEGGGGBCCHHHHHHTTCTTCT-TS-GGGBCHHHHHHHH
T ss_pred hHHHHHHH-------H----HhhccccCCC------CeEEEEecCccCCcccHHHHHHHHHhc-CC-ChHHHHHHHHHHH
Confidence 99 9999 8 9999887764 469999999988766999998753210 10 1123446677777
Q ss_pred HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-cCcEEEEEec
Q psy11400 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-VGITLFTVSH 289 (298)
Q Consensus 211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-~~~TiIiitH 289 (298)
+.++ ....+. .+..|||||+||+++|||++.+|+++|||||++.+|+.. ..+.+ .+. .|+|+|
T Consensus 163 ~~l~-~~~~~~---------~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~-~I~V~a 226 (312)
T 3aez_A 163 TSVK-SGSDYA---------CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDF-SLYVDA 226 (312)
T ss_dssp HHHH-TTCSCE---------EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSE-EEEEEE
T ss_pred HHhC-CCcccC---------CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCc-EEEEEC
Confidence 7765 221111 245899999999999999999999999999999997421 01122 243 466666
Q ss_pred Ccch
Q psy11400 290 RKSL 293 (298)
Q Consensus 290 ~l~~ 293 (298)
+.+.
T Consensus 227 ~~~~ 230 (312)
T 3aez_A 227 RIED 230 (312)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6654
No 74
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.65 E-value=1.6e-16 Score=149.80 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=59.9
Q ss_pred cCCCCChhHHHHHHHHHHHh------cCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFY------HRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~------~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
.+.+||||||||++|||||+ .+|+++||||||++||+.....+.+.+++ .|+|||+|||+++.+..
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~ 350 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA 350 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 56789999999999999999 79999999999999999999999988775 48999999999987554
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.64 E-value=1.1e-19 Score=159.44 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=96.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-----------cCCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-----------PPRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-----------~~r~~ 168 (298)
.|+|+||+|++|++++|+ ||| || |+++ + .|++ | |++.. ..+..
T Consensus 12 ~l~~isl~i~~G~~~~lv--------GpsGsGKSTLl~~-------L----~g~~-p--G~i~~g~~~~~~~~~~~~~~~ 69 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVIC--------GPSGVGKGTLIKK-------L----LNEF-P--NYFYFSVSCTTRKKREKEKEG 69 (218)
T ss_dssp ----------CCCCEEEE--------CSTTSSHHHHHHH-------H----HHHS-T--TTEEECCCEECSCCCSSCCBT
T ss_pred cccCCceecCCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhC-C--CcEEEeecccCCCCCcccccC
Confidence 699999999999999999 999 99 9998 7 7777 4 66542 12356
Q ss_pred EEEEcCcCCCCCC-C-HHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHH-
Q psy11400 169 LFYVPQRPYMTLG-T-LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAM- 245 (298)
Q Consensus 169 i~~v~Q~~~l~~~-t-v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlai- 245 (298)
++|+||++.+|.. + ..+++.++.. ... ..+...+.+.++++...+. ++ ..+|||||+||++|
T Consensus 70 i~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~g~~~~~i~~~l~~~~~~-il------------~~~lsggq~qR~~i~ 134 (218)
T 1z6g_A 70 VDYYFIDKTIFEDKLKNEDFLEYDNY-ANN-FYGTLKSEYDKAKEQNKIC-LF------------EMNINGVKQLKKSTH 134 (218)
T ss_dssp TTBEECCHHHHHHHHHTTCEEEEEEE-TTE-EEEEEHHHHHHHHHTTCEE-EE------------EECHHHHHHHTTCSS
T ss_pred CeEEECCHHHHHHhhhccchhhhhhc-ccc-cCCCcHHHHHHHHhCCCcE-EE------------EecHHHHHHHHHHhc
Confidence 8999998854421 1 0111111100 000 0112244566666543221 11 14799999999999
Q ss_pred ----HHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----------cCcEEEEEecCcchh
Q psy11400 246 ----ARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----------VGITLFTVSHRKSLW 294 (298)
Q Consensus 246 ----ARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----------~~~TiIiitH~l~~~ 294 (298)
||+|+.+|++++|||||+++|..++..+.+.+.+ ...+.|+++|+++.+
T Consensus 135 ~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea 197 (218)
T 1z6g_A 135 IKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197 (218)
T ss_dssp CCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHH
Confidence 8999999999999999999998777777665432 357889999987643
No 76
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=3.3e-16 Score=162.41 Aligned_cols=81 Identities=28% Similarity=0.397 Sum_probs=67.5
Q ss_pred HHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHh---c
Q psy11400 207 TEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCRE---V 280 (298)
Q Consensus 207 ~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~---~ 280 (298)
.+.+..+++.++ .++ .+.+|||||||||+|||||+++|+ +|||||||++||+.....+.+.+++ .
T Consensus 445 ~~~L~~vgL~~l~l~r---------~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSR---------SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp HHHHHTTTCTTCBTTS---------BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHcCCccccccC---------CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 345666676543 233 467999999999999999999887 9999999999999999999888775 4
Q ss_pred CcEEEEEecCcchhhh
Q psy11400 281 GITLFTVSHRKSLWTH 296 (298)
Q Consensus 281 ~~TiIiitH~l~~~~~ 296 (298)
|.|||+||||++.+..
T Consensus 516 G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 516 GNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCEEEEECCCHHHHHT
T ss_pred CCEEEEEeCCHHHHHh
Confidence 8999999999987754
No 77
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=6.7e-16 Score=131.02 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=58.6
Q ss_pred cCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400 231 WIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH 297 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~ 297 (298)
+...||||||||++|||+|+. .|+++||||||++||+.....+.+++++ .+.++|+|||+..+..+.
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~a 133 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANA 133 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhC
Confidence 467899999999999999974 4699999999999999999999998876 367999999998776544
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.63 E-value=7.5e-18 Score=155.09 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=102.7
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC---------------
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP--------------- 165 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~--------------- 165 (298)
+..+||++++|++++++ ||| || +++. + +|+++|++|+|....
T Consensus 90 ~~~l~~~~~~g~vi~lv--------G~nGsGKTTll~~-------L----ag~l~~~~g~V~l~g~d~~r~~a~~ql~~~ 150 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIV--------GVNGGGKTTSLGK-------L----AHRLKNEGTKVLMAAGDTFRAAASDQLEIW 150 (302)
T ss_dssp CCSCCCCSSSCEEEEEE--------CCTTSCHHHHHHH-------H----HHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred ccccccccCCCcEEEEE--------cCCCCCHHHHHHH-------H----HHHHHHcCCeEEEEeecccchhHHHHHHHH
Confidence 45689999999999999 999 99 8888 7 999999999974210
Q ss_pred --CCcEEEEcCcCC-CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHH
Q psy11400 166 --RGKLFYVPQRPY-MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQ 241 (298)
Q Consensus 166 --r~~i~~v~Q~~~-l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQ 241 (298)
+..++|++|++. +++ .++++|+.++.. .... ..+++.+++.+..+ .++.+|| ||
T Consensus 151 ~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~------~~~d----~~lldt~gl~~~~~---------~~~~eLS---kq 208 (302)
T 3b9q_A 151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKE------EGYD----VVLCDTSGRLHTNY---------SLMEELI---AC 208 (302)
T ss_dssp HHHHTCEEECCC--CCCHHHHHHHHHHHHHH------TTCS----EEEECCCCCSSCCH---------HHHHHHH---HH
T ss_pred HHhcCceEEEecCCccCHHHHHHHHHHHHHH------cCCc----chHHhcCCCCcchh---------HHHHHHH---HH
Confidence 235999999987 554 589999876321 0110 01223334432222 2356799 99
Q ss_pred HHHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400 242 RVAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 242 RlaiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~ 290 (298)
|++||||++.+|+ +|+|| ||+|+|+... +.++.++.+.|+|++||-
T Consensus 209 r~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 209 KKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKL 256 (302)
T ss_dssp HHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECC
T ss_pred HHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCC
Confidence 9999999999999 99999 9999998754 334434568999999993
No 79
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.60 E-value=1.4e-15 Score=155.47 Aligned_cols=141 Identities=14% Similarity=-0.036 Sum_probs=101.5
Q ss_pred CCcEEEeeeeEecCC---CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400 78 NNLRGRLGITLGLRS---GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR 150 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~---~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~ 150 (298)
++.+.+++. .+|- +.. .+++|+||+ |++++|+ ||| || ++|+ +
T Consensus 548 ~~~i~i~~~--rHP~le~~~~-------~vl~disl~---g~i~~I~--------GpNGsGKSTlLr~-------i---- 596 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTE-------FVPNDLEMA---HELVLIT--------GPNMAGKSTFLRQ-------T---- 596 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSC-------CCCEEEEES---SCEEEEE--------SCSSSSHHHHHHH-------H----
T ss_pred CCcEEEEEe--ECceEccCCc-------eEeeeccCC---CcEEEEE--------CCCCCChHHHHHH-------H----
Confidence 456788776 3332 222 289999999 9999999 999 99 9998 7
Q ss_pred ccccc-cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccc
Q psy11400 151 DQLWP-LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA 229 (298)
Q Consensus 151 ~~l~~-~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~ 229 (298)
+|+.. +..|.+....+..+++++|- +...++.||+
T Consensus 597 agl~~~~~~G~~vpa~~~~i~~v~~i--~~~~~~~d~l------------------------------------------ 632 (765)
T 1ewq_A 597 ALIALLAQVGSFVPAEEAHLPLFDGI--YTRIGASDDL------------------------------------------ 632 (765)
T ss_dssp HHHHHHHTTTCCBSSSEEEECCCSEE--EEECCC----------------------------------------------
T ss_pred HhhhhhcccCceeehhccceeeHHHh--hccCCHHHHH------------------------------------------
Confidence 77753 56776543223346665551 0001111111
Q ss_pred ccCCCCChhHHHHHHHHHHH--hcCCCEEEEecc---ccCCCHHHH-HHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 230 DWIDVLSGGEKQRVAMARLF--YHRPQFAILDEC---TSAVSVDVE-GSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 230 ~~~~~LSgGqkQRlaiARaL--~~~P~iliLDEP---Ts~LD~~~~-~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
...+|+|++|++.+|+++ +.+|+++||||| |++||.... ..+.+.+.+.|+|+|++||+.++..
T Consensus 633 --~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 633 --AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred --HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 124789999999999999 999999999999 999998875 4688887777999999999987654
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.59 E-value=8e-17 Score=149.95 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=83.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT 179 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~ 179 (298)
+++++||.+++|+.++|+ ||| || |+++ + .|+++|++|.|.......+
T Consensus 160 ~l~~l~~~i~~g~~v~i~--------G~~GsGKTTll~~-------l----~g~~~~~~g~i~i~~~~e~---------- 210 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVC--------GGTGSGKTTYIKS-------I----MEFIPKEERIISIEDTEEI---------- 210 (330)
T ss_dssp HHHHHHHHHHHTCCEEEE--------ESTTSCHHHHHHH-------G----GGGSCTTSCEEEEESSCCC----------
T ss_pred HHhhhhhhccCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCcCCCcEEEECCeecc----------
Confidence 789999999999999999 999 99 9999 8 9999999998864321100
Q ss_pred CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q psy11400 180 LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259 (298)
Q Consensus 180 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLD 259 (298)
..+.. ... +++ ... |||+||++|||||..+|++++||
T Consensus 211 --------~~~~~-----~~~------------i~~----------------~~g--gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 211 --------VFKHH-----KNY------------TQL----------------FFG--GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp --------CCSSC-----SSE------------EEE----------------ECB--TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred --------ccccc-----hhE------------EEE----------------EeC--CChhHHHHHHHHhhhCCCEEEEc
Confidence 00000 000 000 001 89999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 260 ECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 260 EPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
|||+. +..+ +++.+...+.|+|+++|+.+...
T Consensus 248 E~~~~---e~~~-~l~~~~~g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 248 ELRSS---EAYD-FYNVLCSGHKGTLTTLHAGSSEE 279 (330)
T ss_dssp CCCST---HHHH-HHHHHHTTCCCEEEEEECSSHHH
T ss_pred CCChH---HHHH-HHHHHhcCCCEEEEEEcccHHHH
Confidence 99982 3333 23333332458999999998654
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.59 E-value=1e-15 Score=160.84 Aligned_cols=147 Identities=17% Similarity=0.093 Sum_probs=98.0
Q ss_pred CcEEEee-----eeEecCCCCCCCCCCcccceeeeeEEEeC-------CcEEEEeccCCcccCCCC--cc--eeecCccC
Q psy11400 79 NLRGRLG-----ITLGLRSGGLGFDSRWGRSFFDYMFGVRG-------ALNLLWPLFGGTVTKPPR--GK--LFYVPQRP 142 (298)
Q Consensus 79 ~~i~~~~-----v~~~~~~~~~~~~~~~~~~l~~isl~i~~-------g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~ 142 (298)
..++++| |++.|+.+.. +++|++|++++ |++++|+ ||| || ++|.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~--------v~ndi~l~~~~~~~~~~~g~i~~It--------GpNgsGKSTlLr~---- 808 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF--------IPNDILIGCEEEEQENGKAYCVLVT--------GPNMGGKSTLMRQ---- 808 (1022)
T ss_dssp CCEEEEEECCCC------CCCC--------CCEEEEESCCCSCC---CCCEEEEE--------CCTTSSHHHHHHH----
T ss_pred ceEEEEeccccEEEEEecCCce--------EeeeeeeccccccccCCCCcEEEEE--------CCCCCChHHHHHH----
Confidence 4699999 9988854444 99999999987 9999999 999 99 8887
Q ss_pred ccccccccccccccCCceeeccCCCcEE-EEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400 143 YMTLGTLRDQLWPLFGGTVTKPPRGKLF-YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221 (298)
Q Consensus 143 ~~~l~~~~~~l~~~~~G~i~~~~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 221 (298)
+ |+..+ ..++| ||||++. ..++.|+|... +++.+.+..
T Consensus 809 ---i-----Gl~~~---------~aqiG~~Vpq~~~--~l~v~d~I~~r----------------------ig~~d~~~~ 847 (1022)
T 2o8b_B 809 ---A-----GLLAV---------MAQMGCYVPAEVC--RLTPIDRVFTR----------------------LGASDRIMS 847 (1022)
T ss_dssp ---H-----HHHHH---------HHTTTCCEESSEE--EECCCSBEEEE----------------------CC-------
T ss_pred ---H-----HHHHH---------HhheeEEeccCcC--CCCHHHHHHHH----------------------cCCHHHHhh
Confidence 3 44332 12455 9999863 33444544321 111111111
Q ss_pred cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHH-HHH---HHHHHHhc-CcEEEEEecCcchhhh
Q psy11400 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV-EGS---MYEYCREV-GITLFTVSHRKSLWTH 296 (298)
Q Consensus 222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~-~~~---i~~~l~~~-~~TiIiitH~l~~~~~ 296 (298)
..+++|+++++ +++|++++.+|+++||||||+|+|+.. ... +.+.+.+. |+++|++||+++++..
T Consensus 848 ---------~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 848 ---------GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp -----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred ---------chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 13467887775 999999999999999999999999865 333 33444444 8999999999987654
No 82
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.59 E-value=1.8e-15 Score=157.06 Aligned_cols=79 Identities=30% Similarity=0.416 Sum_probs=65.5
Q ss_pred HHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC--CCEEEEeccccCCCHHHHHHHHHHHH---hcCc
Q psy11400 209 YLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR--PQFAILDECTSAVSVDVEGSMYEYCR---EVGI 282 (298)
Q Consensus 209 ~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~--P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~ 282 (298)
.+..+||.++ +++ ...+|||||||||+||++|..+ |+++||||||++||+...+.+.+.++ +.|.
T Consensus 504 ~L~~vGL~~l~l~r---------~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~ 574 (993)
T 2ygr_A 504 FLLDVGLEYLSLSR---------AAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN 574 (993)
T ss_dssp HHHHHTGGGSCTTC---------BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhCCCCccccCC---------CcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCC
Confidence 4566666543 333 4679999999999999999999 58999999999999999888887655 4699
Q ss_pred EEEEEecCcchhhh
Q psy11400 283 TLFTVSHRKSLWTH 296 (298)
Q Consensus 283 TiIiitH~l~~~~~ 296 (298)
|||+|+||++++..
T Consensus 575 TVIvVeHdl~~i~~ 588 (993)
T 2ygr_A 575 TLIVVEHDEDTIEH 588 (993)
T ss_dssp EEEEECCCHHHHHT
T ss_pred EEEEECCCHHHHHh
Confidence 99999999987754
No 83
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.59 E-value=1.3e-15 Score=157.74 Aligned_cols=79 Identities=30% Similarity=0.434 Sum_probs=65.7
Q ss_pred HHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHH---hcCc
Q psy11400 209 YLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCR---EVGI 282 (298)
Q Consensus 209 ~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~---~~~~ 282 (298)
.+..+||.++ +++ ...+|||||||||+||++|..+| +++||||||++||+...+.+.+.++ +.|.
T Consensus 487 ~L~~vGL~~l~ldR---------~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~ 557 (972)
T 2r6f_A 487 FLQNVGLDYLTLSR---------SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 557 (972)
T ss_dssp HHHHHTCTTSBSSS---------BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HhhhCCCCccccCC---------ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence 4666777543 333 36799999999999999999985 9999999999999988888887655 4689
Q ss_pred EEEEEecCcchhhh
Q psy11400 283 TLFTVSHRKSLWTH 296 (298)
Q Consensus 283 TiIiitH~l~~~~~ 296 (298)
|||+|+||++.+..
T Consensus 558 TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 558 TLIVVEHDEDTMLA 571 (972)
T ss_dssp EEEEECCCHHHHHS
T ss_pred EEEEEecCHHHHHh
Confidence 99999999988754
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.59 E-value=3.2e-17 Score=148.59 Aligned_cols=137 Identities=10% Similarity=-0.000 Sum_probs=90.5
Q ss_pred EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------cCCCcEEEEcCcCCCCC-CCH
Q psy11400 117 NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------PPRGKLFYVPQRPYMTL-GTL 183 (298)
Q Consensus 117 ~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------~~r~~i~~v~Q~~~l~~-~tv 183 (298)
.++|+ ||| || |+++ | .|+.+|++|++.. ..++.++|++|++.++. .|+
T Consensus 4 ~v~lv--------G~nGaGKSTLln~-------L----~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv 64 (270)
T 3sop_A 4 NIMVV--------GQSGLGKSTLVNT-------L----FKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTV 64 (270)
T ss_dssp EEEEE--------ESSSSSHHHHHHH-------H----HHHHC------------CCCCCSCCEEEESCC----CCEEEE
T ss_pred EEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceE
Confidence 57999 999 99 9999 8 9999999998742 12467999999997764 599
Q ss_pred HHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400 184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263 (298)
Q Consensus 184 ~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs 263 (298)
.||+.|+.... .....+.+.+.+. ..+.+.. ..+||||||||+++|||++. +++|||||+
T Consensus 65 ~d~~~~g~~~~----~~~~~~~i~~~~~----~~~~~~~---------~~~LS~G~~qrv~iaRal~~---lllldep~~ 124 (270)
T 3sop_A 65 IDTPGFGDQIN----NENCWEPIEKYIN----EQYEKFL---------KEEVNIARKKRIPDTRVHCC---LYFISPTGH 124 (270)
T ss_dssp ECCCC--CCSB----CTTCSHHHHHHHH----HHHHHHH---------HHHSCTTCCSSCCCCSCCEE---EEEECCCSS
T ss_pred Eechhhhhhcc----cHHHHHHHHHHHH----HHHHhhh---------HHhcCcccchhhhhheeeee---eEEEecCCC
Confidence 99998875321 1112233444443 2233221 45899999999999999886 999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 264 AVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 264 ~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
+||+...+. ++.+++. .++|+|.|+.+.+
T Consensus 125 gL~~lD~~~-l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 125 SLRPLDLEF-MKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp SCCHHHHHH-HHHHHTT-SEEEEEETTGGGS
T ss_pred cCCHHHHHH-HHHHHhc-CcEEEEEeccccC
Confidence 999987554 4444554 8999999988755
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.58 E-value=5.9e-17 Score=152.35 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=103.3
Q ss_pred eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---C-------------
Q psy11400 106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---P------------- 165 (298)
Q Consensus 106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---~------------- 165 (298)
..+||++++|++++++ ||| || +++. | +|+++|.+|+|... .
T Consensus 148 ~~l~l~~~~g~vi~lv--------G~nGsGKTTll~~-------L----ag~l~~~~G~V~l~g~D~~r~~a~eql~~~~ 208 (359)
T 2og2_A 148 TELQLGFRKPAVIMIV--------GVNGGGKTTSLGK-------L----AHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 208 (359)
T ss_dssp CSCCCCSSSSEEEEEE--------CCTTSCHHHHHHH-------H----HHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCcceecCCCeEEEEE--------cCCCChHHHHHHH-------H----HhhccccCCEEEEecccccccchhHHHHHHH
Confidence 4589999999999999 999 99 8888 7 99999999997421 0
Q ss_pred -CCcEEEEcCcCC-CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHH
Q psy11400 166 -RGKLFYVPQRPY-MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR 242 (298)
Q Consensus 166 -r~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR 242 (298)
+..|+|++|++. ++ ..++++|+.++.. .... ..+++.+++.+..+ .++.+|| |||
T Consensus 209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~------~~~d----~~lldt~Gl~~~~~---------~~~~eLS---kqr 266 (359)
T 2og2_A 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKE------EGYD----VVLCDTSGRLHTNY---------SLMEELI---ACK 266 (359)
T ss_dssp HHHTCEEECCSSSSCCHHHHHHHHHHHHHH------TTCS----EEEEECCCCSSCCH---------HHHHHHH---HHH
T ss_pred HhcCeEEEEecccccChhhhHHHHHHHHHh------CCCH----HHHHHhcCCChhhh---------hHHHHHH---HHH
Confidence 235999999986 55 4588999876421 0110 01223334432221 2356799 999
Q ss_pred HHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400 243 VAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 243 laiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~ 290 (298)
++||||++.+|+ +|+|| ||+|+|+.... .++.++.+.|+|++||-
T Consensus 267 ~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 267 KAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKL 313 (359)
T ss_dssp HHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESC
T ss_pred HHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecC
Confidence 999999999999 99999 99999987553 33434468999999993
No 86
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=2.7e-15 Score=154.41 Aligned_cols=66 Identities=24% Similarity=0.292 Sum_probs=58.6
Q ss_pred cCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~ 296 (298)
...+|||||||||+||++|..+| +++||||||++||+...+.+.+.++ +.|.|||+|+||++.+..
T Consensus 376 ~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 376 STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 46799999999999999999999 5999999999999988888877654 469999999999987654
No 87
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.52 E-value=2.1e-14 Score=133.82 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=57.5
Q ss_pred cCCCCChhHHH------HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400 231 WIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 231 ~~~~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~ 296 (298)
.+..||||||| |+++|||++.+|++|||||||++||+.....+.+++++ .+.|+|+|||+.+....
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~ 319 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 319 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence 46789999999 67888899999999999999999999999999888765 37899999999876543
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.51 E-value=1.4e-14 Score=142.30 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCC-ChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400 232 IDVL-SGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH 296 (298)
Q Consensus 232 ~~~L-SgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~ 296 (298)
...| ||||||||+|||||+.+| ++|||||||+|||+.....+.+.+++. ++|||+|||+++.+..
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 4567 999999999999999999 999999999999999999888877653 8999999999987654
No 89
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.51 E-value=1.5e-17 Score=144.08 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=88.7
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC--ceeec-----cCCCcEEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG--GTVTK-----PPRGKLFYV 172 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~--G~i~~-----~~r~~i~~v 172 (298)
+++| .+|++|++++|+ ||| || |+++ + .|+++... +.+.. ..++.++|+
T Consensus 11 ~~~~--~~i~~Gei~~l~--------GpnGsGKSTLl~~-------l----~gl~~~i~~~~~~~~~~~~~~~~~~i~~~ 69 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLS--------GPSAVGKSTVVRC-------L----RERIPNLHFSVSATTRAPRPGEVDGVDYH 69 (207)
T ss_dssp ----------CCCEEEEE--------CSTTSSHHHHHHH-------H----HHHSTTCEECCCEESSCCCTTCCBTTTBE
T ss_pred CCCC--CCCCCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhCCceEEcccccccCCcccccCCCeeE
Confidence 8888 799999999999 999 99 8998 6 66654211 22211 123569999
Q ss_pred cCcCCCCC-CCHHHHHccCCcchhh-hhcCCCHHHHHHHHHH----------cCCchhhhhcCCcccccccCCCCChhHH
Q psy11400 173 PQRPYMTL-GTLRDQVIYPHTKEDM-IQKGITDADLTEYLQK----------VQLGYILNREKGWDTVADWIDVLSGGEK 240 (298)
Q Consensus 173 ~Q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~----------~~l~~~~~~~~g~d~~~~~~~~LSgGqk 240 (298)
||++..|. .++.+|+......... .......+++.+.++. +++.++.++ .+..||
T Consensus 70 ~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~lS---- 136 (207)
T 1znw_A 70 FIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT---------MPEAVT---- 136 (207)
T ss_dssp ECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH---------CTTSEE----
T ss_pred ecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh---------cCCcEE----
Confidence 99986543 3555555322111000 0011122333333322 233222222 245677
Q ss_pred HHHHHHHHHhcCCCEEEEeccccCC----CHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400 241 QRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCRE----VGITLFTVSHRKSLWT 295 (298)
Q Consensus 241 QRlaiARaL~~~P~iliLDEPTs~L----D~~~~~~i~~~l~~----~~~TiIiitH~l~~~~ 295 (298)
||+.+|++++|||||+++ |+..+..+.+++++ .+.|+|+|||+++.+.
T Consensus 137 -------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~ 192 (207)
T 1znw_A 137 -------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESAC 192 (207)
T ss_dssp -------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHH
T ss_pred -------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHH
Confidence 899999999999999998 67777777766543 4899999999998765
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.48 E-value=4e-14 Score=139.28 Aligned_cols=131 Identities=12% Similarity=0.056 Sum_probs=93.3
Q ss_pred eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHH
Q psy11400 109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLR 184 (298)
Q Consensus 109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~ 184 (298)
+..+++|++++|+ |+| || |++. + ++..++. |. +.+.|++|++. ..+.
T Consensus 275 ~g~i~~G~i~~i~--------G~~GsGKSTLl~~-------l----~g~~~~~-G~------~vi~~~~ee~~---~~l~ 325 (525)
T 1tf7_A 275 GGGFFKDSIILAT--------GATGTGKTLLVSR-------F----VENACAN-KE------RAILFAYEESR---AQLL 325 (525)
T ss_dssp TSSEESSCEEEEE--------ECTTSSHHHHHHH-------H----HHHHHTT-TC------CEEEEESSSCH---HHHH
T ss_pred CCCCCCCcEEEEE--------eCCCCCHHHHHHH-------H----HHHHHhC-CC------CEEEEEEeCCH---HHHH
Confidence 4589999999999 999 99 8777 6 7776664 42 22678888862 1333
Q ss_pred HHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccC
Q psy11400 185 DQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264 (298)
Q Consensus 185 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~ 264 (298)
.+... .+.+. .+ +...++..+.+ ..+.+|||||+||+++|+++..+|+++|+| ||++
T Consensus 326 ~~~~~---------~g~~~---~~-~~~~g~~~~~~---------~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~ 382 (525)
T 1tf7_A 326 RNAYS---------WGMDF---EE-MERQNLLKIVC---------AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSA 382 (525)
T ss_dssp HHHHT---------TSCCH---HH-HHHTTSEEECC---------CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHH
T ss_pred HHHHH---------cCCCH---HH-HHhCCCEEEEE---------eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHH
Confidence 33211 11221 11 22333332222 236789999999999999999999999999 9999
Q ss_pred CCHH-----HHHHHHHHH---HhcCcEEEEEecCc
Q psy11400 265 VSVD-----VEGSMYEYC---REVGITLFTVSHRK 291 (298)
Q Consensus 265 LD~~-----~~~~i~~~l---~~~~~TiIiitH~l 291 (298)
||.. ....+.+++ ++.|+|+|+++|+.
T Consensus 383 Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 383 LARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 9988 777766654 44699999999998
No 91
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.47 E-value=7.5e-16 Score=148.54 Aligned_cols=152 Identities=13% Similarity=0.010 Sum_probs=112.3
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++++++.|..+.. +|+++ |+|.+|++++|+ ||| || |+++ + +|++
T Consensus 130 ~~l~~~~v~~~~~tg~~--------vld~v-l~i~~Gq~~~Iv--------G~sGsGKSTLl~~-------I----ag~~ 181 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR--------AINAL-LTVGRGQRMGLF--------AGSGVGKSVLLGM-------M----ARYT 181 (438)
T ss_dssp CTTTSCCCCSBCCCSCH--------HHHHH-SCCBTTCEEEEE--------ECTTSSHHHHHHH-------H----HHHS
T ss_pred CceEEeccceecCCCce--------EEeee-EEecCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence 46889999999964444 99999 999999999999 999 99 9998 8 9999
Q ss_pred ccCCceeecc-------------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400 155 PLFGGTVTKP-------------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213 (298)
Q Consensus 155 ~~~~G~i~~~-------------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 213 (298)
+|+.|.+... .++.++|++|+.. +...++.+|+.+... .....
T Consensus 182 ~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae----------------~~~~~ 245 (438)
T 2dpy_A 182 RADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAE----------------DFRDR 245 (438)
T ss_dssp CCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH----------------HHHTT
T ss_pred CCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHH----------------HHHhC
Confidence 9998876421 1356999999632 234577777765310 00000
Q ss_pred CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-------Cc----
Q psy11400 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-------GI---- 282 (298)
Q Consensus 214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-------~~---- 282 (298)
+ .+. ....+....||+|| ||++|| +.+|++ |+|||+.+...+.+++++. |+
T Consensus 246 ~-~~v-------~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~ 307 (438)
T 2dpy_A 246 G-QHV-------LLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAF 307 (438)
T ss_dssp T-CEE-------EEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEE
T ss_pred C-CCH-------HHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccce
Confidence 0 000 00112245799999 999999 889988 9999999999999988652 43
Q ss_pred -EEEEEecCcc
Q psy11400 283 -TLFTVSHRKS 292 (298)
Q Consensus 283 -TiIiitH~l~ 292 (298)
|++++|||++
T Consensus 308 ~tVlv~tHdl~ 318 (438)
T 2dpy_A 308 YTVLTEGDDQQ 318 (438)
T ss_dssp EEEECSSSCSC
T ss_pred eEEEEeCCCcc
Confidence 9999999996
No 92
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.45 E-value=3.9e-15 Score=132.24 Aligned_cols=146 Identities=9% Similarity=0.038 Sum_probs=90.8
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-cCCCcEEEEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-PPRGKLFYVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-~~r~~i~~v~Q~~~l 178 (298)
+|+|+||++++|++++|+ ||| || |+++ + .+++ |.+.. ..++.++|++|+++.
T Consensus 14 ~l~~isl~i~~g~iigI~--------G~~GsGKSTl~k~-------L----~~~l----G~~~~~~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVS--------GGTASGKSTVCEK-------I----MELL----GQNEVEQRQRKVVILSQDRFY 70 (245)
T ss_dssp ---------CCSEEEEEE--------CSTTSSHHHHHHH-------H----HHHH----TGGGSCGGGCSEEEEEGGGGB
T ss_pred eecceeccCCCCEEEEEE--------CCCCCCHHHHHHH-------H----HHHh----chhcccccCCceEEEeCCcCc
Confidence 899999999999999999 999 99 8888 6 5543 22211 235679999999754
Q ss_pred CCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400 179 TLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI 257 (298)
Q Consensus 179 ~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~ili 257 (298)
...|+.+++.+........ ......+.+.+.++.+ .+.. ......||+||+||+++ ++++.+|+++|
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~---------~~~~~~ls~g~~~r~~~-~~~~~~~~~li 138 (245)
T 2jeo_A 71 KVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGK---------TVEVPTYDFVTHSRLPE-TTVVYPADVVL 138 (245)
T ss_dssp CCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTC---------CEEECCEETTTTEECSS-CEEECCCSEEE
T ss_pred cccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCC---------CeecccccccccCccCc-eEEecCCCEEE
Confidence 5568888875432110000 0112234445555542 1111 11356899999999988 68899999999
Q ss_pred EeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400 258 LDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK 291 (298)
Q Consensus 258 LDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l 291 (298)
||||....+... .+. .+.|++++||+.
T Consensus 139 lDg~~~~~~~~l----~~~---~~~~i~v~th~~ 165 (245)
T 2jeo_A 139 FEGILVFYSQEI----RDM---FHLRLFVDTDSD 165 (245)
T ss_dssp EECTTTTTSHHH----HTT---CSEEEEEECCHH
T ss_pred EeCccccccHHH----HHh---cCeEEEEECCHH
Confidence 999988887642 221 388999999973
No 93
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.44 E-value=3.7e-13 Score=139.74 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHH----HHHH-hcCcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCR-EVGITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~----~~l~-~~~~TiIiitH~l~~~~ 295 (298)
.+++|+||+|++.++++ +.+|+++||||||+|+|+.....+. +.+. +.|+|+|++||++++..
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 46899999999999999 8999999999999999997655543 3332 35899999999998765
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.38 E-value=4.7e-16 Score=134.34 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=103.0
Q ss_pred EeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCC---CCHH
Q psy11400 112 VRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTL---GTLR 184 (298)
Q Consensus 112 i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~---~tv~ 184 (298)
.++|++++|+ |+| || |+++ + .|++.| +++|++|+++++. .++.
T Consensus 3 ~~~~~~i~i~--------G~~GsGKSTl~~~-------l----~~~~~~-----------~i~~v~~d~~~~~~~~~~~~ 52 (211)
T 3asz_A 3 APKPFVIGIA--------GGTASGKTTLAQA-------L----ARTLGE-----------RVALLPMDHYYKDLGHLPLE 52 (211)
T ss_dssp --CCEEEEEE--------ESTTSSHHHHHHH-------H----HHHHGG-----------GEEEEEGGGCBCCCTTSCHH
T ss_pred CCCcEEEEEE--------CCCCCCHHHHHHH-------H----HHHhCC-----------CeEEEecCccccCcccccHH
Confidence 5789999999 999 99 8998 7 777654 5899999997653 4787
Q ss_pred HHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH----HHHHHHHHHHhcCCCEEEEec
Q psy11400 185 DQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE----KQRVAMARLFYHRPQFAILDE 260 (298)
Q Consensus 185 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq----kQRlaiARaL~~~P~iliLDE 260 (298)
++..+.... ......+.+.++++.+++.+.+..+ +..+|+|| +||+++|++++.+|.++++||
T Consensus 53 ~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de 119 (211)
T 3asz_A 53 ERLRVNYDH----PDAFDLALYLEHAQALLRGLPVEMP---------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPK 119 (211)
T ss_dssp HHHHSCTTS----GGGBCHHHHHHHHHHHHTTCCEEEC---------CEETTTTEECSSCEEECCCSEEEEESTTTTSSH
T ss_pred HhcCCCCCC----hhhhhHHHHHHHHHHHHcCCCcCCC---------cccCcccCCCCCeEEeCCCcEEEEeehhhccCH
Confidence 876554211 1123456677788877765544333 56789996 578899999999999999999
Q ss_pred cccC-------CCHHHHHHHHHHHHh----cCcEEEEEecCc
Q psy11400 261 CTSA-------VSVDVEGSMYEYCRE----VGITLFTVSHRK 291 (298)
Q Consensus 261 PTs~-------LD~~~~~~i~~~l~~----~~~TiIiitH~l 291 (298)
||++ ||+..+..+.+.+++ .|.|++.++|+.
T Consensus 120 ~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 120 ELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999 898777777766543 489999999984
No 95
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=1.2e-12 Score=123.42 Aligned_cols=64 Identities=31% Similarity=0.380 Sum_probs=56.4
Q ss_pred CCCCChhHHHHH------HHHHHHhcC-CCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400 232 IDVLSGGEKQRV------AMARLFYHR-PQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT 295 (298)
Q Consensus 232 ~~~LSgGqkQRl------aiARaL~~~-P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~ 295 (298)
+..||||||||+ ++||+++.+ |+++||||||++||+.....+.+.+++. +.+||+|||++....
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~ 350 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED 350 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGG
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHh
Confidence 468999999988 667999999 9999999999999999999999998763 469999999987543
No 96
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.36 E-value=7.3e-13 Score=124.52 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=55.0
Q ss_pred CC-CCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400 232 ID-VLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 232 ~~-~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~ 290 (298)
+. .||||||||++||++|+ .+|++||||||||+||+.....+.+.+++.+.|+|++||.
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 44 69999999999999999 8999999999999999999999999998866899999993
No 97
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.36 E-value=8.1e-13 Score=126.70 Aligned_cols=64 Identities=28% Similarity=0.499 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~~~ 296 (298)
..||||||||++||++|+ .+|+++||||||++||+.....+.+++++. +.++|+|||+..+...
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~ 402 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 402 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence 469999999999999999 589999999999999999999999988763 5799999999776543
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.33 E-value=4.3e-13 Score=120.77 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=84.3
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC-CceeeccCCCcEEEEcCcCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF-GGTVTKPPRGKLFYVPQRPYM 178 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~-~G~i~~~~r~~i~~v~Q~~~l 178 (298)
+|+++| +++|++++|+ ||| || ++++ + .|+++|+ +|+|..... .+.|++|++.
T Consensus 16 vl~~i~--i~~g~~v~i~--------Gp~GsGKSTll~~-------l----~g~~~~~~~G~I~~~g~-~i~~~~~~~~- 72 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVT--------GPTGSGKSTTIAS-------M----IDYINQTKSYHIITIED-PIEYVFKHKK- 72 (261)
T ss_dssp HHHHGG--GCSSEEEEEE--------CSTTCSHHHHHHH-------H----HHHHHHHCCCEEEEEES-SCCSCCCCSS-
T ss_pred HHHHHh--hCCCCEEEEE--------CCCCccHHHHHHH-------H----HHhCCCCCCCEEEEcCC-cceeecCCcc-
Confidence 899999 8999999999 999 99 9998 8 8999887 898753211 2334444321
Q ss_pred CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy11400 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258 (298)
Q Consensus 179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliL 258 (298)
.+- .. ..++++ ...| |++||+||..+|+++++
T Consensus 73 ---------~~v-------~q-----------~~~gl~---------------~~~l------~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 73 ---------SIV-------NQ-----------REVGED---------------TKSF------ADALRAALREDPDVIFV 104 (261)
T ss_dssp ---------SEE-------EE-----------EEBTTT---------------BSCH------HHHHHHHHHHCCSEEEE
T ss_pred ---------eee-------eH-----------HHhCCC---------------HHHH------HHHHHHHHhhCCCEEEe
Confidence 000 00 011111 1123 89999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 259 DECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 259 DEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
|||| |+++...+.+... .|.++++++|+.+...
T Consensus 105 DEp~---D~~~~~~~l~~~~-~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 105 GEMR---DLETVETALRAAE-TGHLVFGTLHTNTAID 137 (261)
T ss_dssp SCCC---SHHHHHHHHHHHH-TTCEEEEEECCSSHHH
T ss_pred CCCC---CHHHHHHHHHHHc-cCCEEEEEeCcchHHH
Confidence 9999 9988776666543 4899999999987543
No 99
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.33 E-value=3.3e-12 Score=132.98 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=49.7
Q ss_pred CCCChhHHHHHHHHHHH--hcCCCEEEEeccccCCCHHHHHHH----HHHHHh-cCcEEEEEecCcchhhh
Q psy11400 233 DVLSGGEKQRVAMARLF--YHRPQFAILDECTSAVSVDVEGSM----YEYCRE-VGITLFTVSHRKSLWTH 296 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL--~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~-~~~TiIiitH~l~~~~~ 296 (298)
..+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ .+.+.+ .|+|+|++||+.++...
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence 35788888888888888 999999999999999999765444 344444 58999999999887654
No 100
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.27 E-value=4.3e-13 Score=125.58 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=103.1
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
..++++++++.|..+.. +++++ |+|.+|++++|+ |+| || |+++ + .|+.
T Consensus 44 ~~i~~~~l~~~~~tg~~--------ald~l-l~i~~Gq~~gIi--------G~nGaGKTTLl~~-------I----~g~~ 95 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR--------AIDGL-LTCGIGQRIGIF--------AGSGVGKSTLLGM-------I----CNGA 95 (347)
T ss_dssp CSTTCCCCCSEECCSCH--------HHHHH-SCEETTCEEEEE--------ECTTSSHHHHHHH-------H----HHHS
T ss_pred CCeeecccceecCCCCE--------EEEee-eeecCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence 46789999999964444 89999 999999999999 999 99 9998 8 8888
Q ss_pred ccCCceeeccC------------------CCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400 155 PLFGGTVTKPP------------------RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216 (298)
Q Consensus 155 ~~~~G~i~~~~------------------r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 216 (298)
.|+.|.+.... ++.+.+++|... ....++..++..+.+.
T Consensus 96 ~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----------------------~~~~r~~~~~~~~~~a 152 (347)
T 2obl_A 96 SADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----------------------PALERMKAAFTATTIA 152 (347)
T ss_dssp CCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----------------------CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----------------------CHHHHHHHHHHHHHHH
Confidence 88877653211 111233332210 0112233333333332
Q ss_pred hh-hhhcCCcccc--cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-----Cc-----E
Q psy11400 217 YI-LNREKGWDTV--ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-----GI-----T 283 (298)
Q Consensus 217 ~~-~~~~~g~d~~--~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-----~~-----T 283 (298)
++ .+ .+.+.. .+.+..||+|| ||+++| +.+|++ |+|+|+.....+.+++++. |. |
T Consensus 153 e~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~t 220 (347)
T 2obl_A 153 EYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYT 220 (347)
T ss_dssp HHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEE
T ss_pred HHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEE
Confidence 22 12 122221 13467899999 999999 688888 9999999999999988752 55 8
Q ss_pred EEEEecCcc
Q psy11400 284 LFTVSHRKS 292 (298)
Q Consensus 284 iIiitH~l~ 292 (298)
|+++||+++
T Consensus 221 Vl~~thdl~ 229 (347)
T 2obl_A 221 VLLESDNVN 229 (347)
T ss_dssp EECCSSCCC
T ss_pred EEEeCCCCC
Confidence 999999987
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.27 E-value=4.8e-14 Score=129.44 Aligned_cols=152 Identities=10% Similarity=-0.030 Sum_probs=75.3
Q ss_pred eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc-cccCC
Q psy11400 84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-WPLFG 158 (298)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-~~~~~ 158 (298)
+||++.|.. .. ++++++|+| +|+ |+| || |++. | .|. ..|.+
T Consensus 2 ~~l~~~~~~-~~--------~l~~~~~~I------~lv--------G~nG~GKSTLl~~-------L----~g~~~~~~~ 47 (301)
T 2qnr_A 2 SNLPNQVHR-KS--------VKKGFEFTL------MVV--------GESGLGKSTLINS-------L----FLTDLYPER 47 (301)
T ss_dssp -------------------------CEEE------EEE--------EETTSSHHHHHHH-------H----HC-------
T ss_pred CCCcceECC-EE--------EEcCCCEEE------EEE--------CCCCCCHHHHHHH-------H----hCCCccCCC
Confidence 467777742 33 899999998 999 999 99 8887 5 554 45555
Q ss_pred ceee-------cc-CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccc
Q psy11400 159 GTVT-------KP-PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA 229 (298)
Q Consensus 159 G~i~-------~~-~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~ 229 (298)
| +. .. ....+++++|.+..+ ..+++|+..++.... ..+....+.+. +.+..++
T Consensus 48 g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-------~~e~~~~l~~~--l~~~~~~-------- 109 (301)
T 2qnr_A 48 V-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN-------CRDCFKTIISY--IDEQFER-------- 109 (301)
T ss_dssp ------------------CEEEEC---CCEEEEEEEEC------------------CTTHHHH--HHHHHHH--------
T ss_pred C-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC-------cHHHHHHHHHH--HHHHHHH--------
Confidence 5 31 11 134588999986543 347777665542110 00000111111 1111111
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccC-CCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA-VSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 230 ~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~-LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
...++|||||||+.+|||++ ++++||||++ ||+...+.+.++..+.+.++|+.+||+.
T Consensus 110 -~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 -YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp -HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred -HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 24579999999999999986 9999999985 9998754443332234789999999985
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.24 E-value=2.1e-14 Score=141.32 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=88.8
Q ss_pred ceeeeeE-EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC----------CCc
Q psy11400 104 SFFDYMF-GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP----------RGK 168 (298)
Q Consensus 104 ~l~~isl-~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~----------r~~ 168 (298)
+|+++|| .|++|++++|+ ||| || |+++ + +..|+.+|.+|.+.... ++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~--------G~nGsGKSTL~~~-------~--ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVS--------GTSGTGKTLFSIQ-------F--LYNGIIEFDEPGVFVTFEETPQDIIKNARS 89 (525)
T ss_dssp THHHHTTSSEETTSEEEEE--------ESTTSSHHHHHHH-------H--HHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred hHHHhcCCCCCCCeEEEEE--------cCCCCCHHHHHHH-------H--HHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence 8999999 99999999999 999 99 7665 2 01688888889875321 245
Q ss_pred EEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400 169 LFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 169 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa 248 (298)
+||++|++... +|+.+... .. . .+..++++.+++.++.++ .+..||+|
T Consensus 90 ~g~~~q~~~~~-----~~l~~~~~------~~-~-~~~~~~l~~~~l~~~~~~---------~~~~LS~g---------- 137 (525)
T 1tf7_A 90 FGWDLAKLVDE-----GKLFILDA------SP-D-PEGQEVVGGFDLSALIER---------INYAIQKY---------- 137 (525)
T ss_dssp GTCCHHHHHHT-----TSEEEEEC------CC-C-SSCCSCCSSHHHHHHHHH---------HHHHHHHH----------
T ss_pred cCCChHHhhcc-----CcEEEEec------Cc-c-cchhhhhcccCHHHHHHH---------HHHHHHHc----------
Confidence 78888876311 11211000 00 0 000011122222222222 13456665
Q ss_pred HhcCCCEEEEeccccC-----CCHHHHHHHHHHHH---hcCcEEEEEecCcchh
Q psy11400 249 FYHRPQFAILDECTSA-----VSVDVEGSMYEYCR---EVGITLFTVSHRKSLW 294 (298)
Q Consensus 249 L~~~P~iliLDEPTs~-----LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~ 294 (298)
+|++++|||||+. +|+...+.+.++++ +.|+|+|++||+++.+
T Consensus 138 ---~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 138 ---RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp ---TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred ---CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 5789999999985 58888887777654 3599999999999864
No 103
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=6e-14 Score=120.26 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=84.3
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc-
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW- 154 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~- 154 (298)
.++++|++|.|. .. ++++ |.+++|..++|+ |++ || |++. + .|..
T Consensus 3 ~l~~~~~~~~~~--~~--------~l~~--~~~~~~~~v~lv--------G~~g~GKSTLl~~-------l----~g~~~ 51 (210)
T 1pui_A 3 NLNYQQTHFVMS--AP--------DIRH--LPSDTGIEVAFA--------GRSNAGKSSALNT-------L----TNQKS 51 (210)
T ss_dssp --------CEEE--ES--------SGGG--SSCSCSEEEEEE--------ECTTSSHHHHHTT-------T----CCC--
T ss_pred chhhhhhhheee--cC--------CHhH--CCCCCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence 478999999995 23 7877 899999999999 999 99 8888 5 5544
Q ss_pred ----ccCCceeeccC----CCcEEEEcCcCCCC-----CC---CHHHHHc--c--CCcch-----hhhhcCCC--HHHHH
Q psy11400 155 ----PLFGGTVTKPP----RGKLFYVPQRPYMT-----LG---TLRDQVI--Y--PHTKE-----DMIQKGIT--DADLT 207 (298)
Q Consensus 155 ----~~~~G~i~~~~----r~~i~~v~Q~~~l~-----~~---tv~eni~--~--~~~~~-----~~~~~~~~--~~~i~ 207 (298)
.|+.|.+.... ...+-++ +-|-.. .. ..+..+. + ..... ........ +.++.
T Consensus 52 ~~~~~~~~G~~~~~~~~~~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~ 130 (210)
T 1pui_A 52 LARTSKTPGRTQLINLFEVADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 130 (210)
T ss_dssp -----------CCEEEEEEETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred cccccCCCccceeeEEEEecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH
Confidence 56666543210 0111111 111110 00 0111110 0 00000 00001112 22344
Q ss_pred HHHHHcCCchhhhhcCCcccccccCCCCChhHHHH-HHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR-VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 208 ~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR-laiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
++++..++..++ ...+...+|+||+|| +..+++++.+|+++++|||||++|......+++.+.+
T Consensus 131 ~~~~~~~~~~~~--------v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 131 EWAVDSNIAVLV--------LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHTTCCEEE--------EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCCeEE--------EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 555554443211 112456799999999 8999999999999999999999999888888777654
No 104
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.23 E-value=4.5e-13 Score=121.83 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=83.7
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCC
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT 179 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~ 179 (298)
+|+++++.+++|++++|+ |+| || |++. + ++...+.+|. .+.|+..+. .
T Consensus 24 ~Ld~i~~~l~~G~~~~i~--------G~~G~GKTTl~~~-------i----a~~~~~~~G~-------~v~~~~~e~--~ 75 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVT--------SGSGMGKSTFVRQ-------Q----ALQWGTAMGK-------KVGLAMLEE--S 75 (296)
T ss_dssp THHHHHCSBCTTCEEEEE--------ESTTSSHHHHHHH-------H----HHHHHHTSCC-------CEEEEESSS--C
T ss_pred HHHHHhcCCCCCeEEEEE--------eCCCCCHHHHHHH-------H----HHHHHHHcCC-------eEEEEeCcC--C
Confidence 899999999999999999 999 99 7777 6 7877777662 133333221 0
Q ss_pred CCCHHHHHc-c--CCcchh--hhh-cCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH-HHHHHHHHHHhcC
Q psy11400 180 LGTLRDQVI-Y--PHTKED--MIQ-KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE-KQRVAMARLFYHR 252 (298)
Q Consensus 180 ~~tv~eni~-~--~~~~~~--~~~-~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq-kQRlaiARaL~~~ 252 (298)
...+...+. + ...... ... .....++..+..+.+ ++.. .+. ..+.+..+|.+| +||+. |+++.++
T Consensus 76 ~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----l~~~-~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~ 147 (296)
T 1cr0_A 76 VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL-----FGND-TFH-LYDSFAEAETDRLLAKLA-YMRSGLG 147 (296)
T ss_dssp HHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH-----HSSS-CEE-EECCCCSCCHHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH-----hccC-CEE-EECCCCCCCHHHHHHHHH-HHHHhcC
Confidence 001111111 0 000000 000 000011111222111 0000 000 111235689998 67777 9999999
Q ss_pred CCEEEEecccc---C---CCH-HHHHHHHHHH----HhcCcEEEEEecCc
Q psy11400 253 PQFAILDECTS---A---VSV-DVEGSMYEYC----REVGITLFTVSHRK 291 (298)
Q Consensus 253 P~iliLDEPTs---~---LD~-~~~~~i~~~l----~~~~~TiIiitH~l 291 (298)
|+++|+||||+ + +|. .....+.+.+ ++.|+|||++||..
T Consensus 148 p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 148 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 99999999999 4 344 4444455444 44599999999995
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.22 E-value=2.3e-11 Score=109.69 Aligned_cols=142 Identities=11% Similarity=0.143 Sum_probs=83.7
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec----cCCCcEEEEcCcCCCCCCC
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK----PPRGKLFYVPQRPYMTLGT 182 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~----~~r~~i~~v~Q~~~l~~~t 182 (298)
.+++|++++|+ ||| || |++. + ++... .|.+.. .....+.|+..+... ..
T Consensus 26 gl~~G~i~~i~--------G~~GsGKTtl~~~-------l----~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~ 82 (279)
T 1nlf_A 26 NMVAGTVGALV--------SPGGAGKSMLALQ-------L----AAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TA 82 (279)
T ss_dssp TEETTSEEEEE--------ESTTSSHHHHHHH-------H----HHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HH
T ss_pred CccCCCEEEEE--------cCCCCCHHHHHHH-------H----HHHHh--cCCCcCCCccCCCccEEEEECCCCH--HH
Confidence 57899999999 999 99 6555 4 33222 232211 113457777654321 11
Q ss_pred HHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccc
Q psy11400 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262 (298)
Q Consensus 183 v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPT 262 (298)
+...+.. ...........++++.+.+.+..++ .+..||+||+|++ ++++.+|+++|+||||
T Consensus 83 ~~~r~~~-------~g~~~~~~~~~~~~~~l~l~~~~~~---------~~~~ls~g~~~~i---~~l~~~~~livlDe~~ 143 (279)
T 1nlf_A 83 IHHRLHA-------LGAHLSAEERQAVADGLLIQPLIGS---------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLR 143 (279)
T ss_dssp HHHHHHH-------HHTTSCHHHHHHHHHHEEECCCTTS---------CCCTTSHHHHHHH---HHHHTTCSEEEEECGG
T ss_pred HHHHHHH-------HHhhcChhhhhhccCceEEeecCCC---------CcccCCHHHHHHH---HHhcCCCCEEEECCHH
Confidence 1111110 0012233445556666665443322 3678999998865 6888999999999999
Q ss_pred c--CCCHHHH---HHHHH----HHHhcCcEEEEEecCcchh
Q psy11400 263 S--AVSVDVE---GSMYE----YCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 263 s--~LD~~~~---~~i~~----~l~~~~~TiIiitH~l~~~ 294 (298)
+ ++|.... ..+.+ +.++.|+|+|+++|.....
T Consensus 144 ~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 144 RFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp GGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 9 8886322 33433 3345699999999987643
No 106
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=2.3e-13 Score=130.36 Aligned_cols=155 Identities=8% Similarity=-0.036 Sum_probs=89.8
Q ss_pred CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW 154 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~ 154 (298)
+.+.++|+++.|+. .. +++++||+| +|+ |+| || |++. + .|..
T Consensus 10 ~~l~~~~l~~~y~~-~~--------vl~~vsf~I------~lv--------G~sGaGKSTLln~-------L----~g~~ 55 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KS--------VKRGFEFTL------MVV--------GESGLGKSTLINS-------L----FLTD 55 (418)
T ss_dssp -----CCCCCCTTT-TT--------CC-CCCEEE------EEE--------CCTTSSHHHHHHH-------H----TTCC
T ss_pred CcEEEEecceeECC-EE--------EecCCCEEE------EEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence 46899999999953 33 899999998 999 999 99 8888 6 5554
Q ss_pred ccCCc--eeec-----cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 155 PLFGG--TVTK-----PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 155 ~~~~G--~i~~-----~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
.+..| .+.. .....+++++|++.++ ..|+.|++.++.... .......+.+.+ +
T Consensus 56 ~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i---------~------ 116 (418)
T 2qag_C 56 LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYI---------D------ 116 (418)
T ss_dssp CCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------------CHHHHHHH---------H------
T ss_pred CCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHH---------H------
Confidence 43222 1110 1124588999987665 468888877653210 000001111111 1
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCC---EEEEeccc-cCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQ---FAILDECT-SAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~---iliLDEPT-s~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
..++.+++||++||||++.+|+ ++++|||| ++||+.....+ +.+.. +.++|+|.|..+++
T Consensus 117 ------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l-k~L~~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 117 ------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM-KRLHE-KVNIIPLIAKADTL 180 (418)
T ss_dssp ------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH-HHHTT-TSEEEEEEESTTSS
T ss_pred ------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH-HHHhc-cCcEEEEEEcccCc
Confidence 1356677889999999999999 99999999 69998775433 44444 78999999988764
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.19 E-value=1.7e-12 Score=112.64 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=38.2
Q ss_pred CChhH-HHHHHHHHHHhc-------CCCEEEEeccccCCCHH----------------HHHHHHHHHHhcCcEEEEEecC
Q psy11400 235 LSGGE-KQRVAMARLFYH-------RPQFAILDECTSAVSVD----------------VEGSMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 235 LSgGq-kQRlaiARaL~~-------~P~iliLDEPTs~LD~~----------------~~~~i~~~l~~~~~TiIiitH~ 290 (298)
.+.++ ++.+..+++++. +|+++++||||+++|+. ....+.++.++.|+|||++||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 34443 333555666555 99999999999999873 1122333344569999999995
Q ss_pred cc
Q psy11400 291 KS 292 (298)
Q Consensus 291 l~ 292 (298)
..
T Consensus 180 ~~ 181 (231)
T 4a74_A 180 QA 181 (231)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.18 E-value=4.9e-11 Score=122.56 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=44.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHH----HHHHHHHHh-cCcEEEEEecCcchhh
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE----GSMYEYCRE-VGITLFTVSHRKSLWT 295 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~----~~i~~~l~~-~~~TiIiitH~l~~~~ 295 (298)
+++|+++++ ++.+...+.+|+++|||||++|+|+... ..+.+.+.+ .|+|+|++||+.++..
T Consensus 668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 734 (800)
T ss_dssp --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH
Confidence 356777765 4445556899999999999888876432 234455555 4899999999998764
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.14 E-value=2.6e-11 Score=113.80 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
+|||||.++|+++++|||| |.++.+.+.+... .|.|+|+++|+.+.+.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHHH
Confidence 9999999999999999999 7888777777654 4999999999998764
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.14 E-value=1.6e-11 Score=112.79 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=89.5
Q ss_pred CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC-----------------CCcEEEE
Q psy11400 114 GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP-----------------RGKLFYV 172 (298)
Q Consensus 114 ~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~-----------------r~~i~~v 172 (298)
+|++++|+ ||| || +++. + +++++|++|+|.... +..++|+
T Consensus 101 ~g~vi~lv--------G~nGsGKTTll~~-------L----agll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v 161 (304)
T 1rj9_A 101 KGRVVLVV--------GVNGVGKTTTIAK-------L----GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI 161 (304)
T ss_dssp SSSEEEEE--------CSTTSSHHHHHHH-------H----HHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEE
T ss_pred CCeEEEEE--------CCCCCcHHHHHHH-------H----HHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEE
Confidence 78999999 999 99 8888 7 999999999874210 2358999
Q ss_pred cCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHh
Q psy11400 173 PQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFY 250 (298)
Q Consensus 173 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~ 250 (298)
+|++.+++ .++++|+.++.. . +.+. +++..+..+... ..++..++||++||||++
T Consensus 162 ~q~~~~~p~~~v~~~v~~~~~------~--------------~~d~~llDt~G~~~~~~---~~~~eLs~~r~~iaRal~ 218 (304)
T 1rj9_A 162 QGPEGTDSAALAYDAVQAMKA------R--------------GYDLLFVDTAGRLHTKH---NLMEELKKVKRAIAKADP 218 (304)
T ss_dssp CCCTTCCHHHHHHHHHHHHHH------H--------------TCSEEEECCCCCCTTCH---HHHHHHHHHHHHHHHHCT
T ss_pred EeCCCCCHHHHHHHHHHHHHh------C--------------CCCEEEecCCCCCCchH---HHHHHHHHHHHHHHHhhc
Confidence 99986654 477787764310 0 1111 111111111111 123445589999999999
Q ss_pred cCCC--EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 251 HRPQ--FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 251 ~~P~--iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
.+|+ ++.|| |+++.+ ....+.++.++.+.|+|++||.....
T Consensus 219 ~~P~~~lLvLD-a~t~~~--~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 219 EEPKEVWLVLD-AVTGQN--GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp TCCSEEEEEEE-TTBCTH--HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred CCCCeEEEEEc-HHHHHH--HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 9999 77778 666654 33344444445689999999986543
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.13 E-value=3.9e-12 Score=119.03 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=80.0
Q ss_pred ceeee-eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--ccCC----ce-eeccC-----C
Q psy11400 104 SFFDY-MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW--PLFG----GT-VTKPP-----R 166 (298)
Q Consensus 104 ~l~~i-sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~--~~~~----G~-i~~~~-----r 166 (298)
.|+++ ++.|++|++++|+ ||| || |++. + ++.+ +|+. |+ +.... +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~--------G~~GsGKTTL~~~-------l----~~~~~~~~~~Gg~~G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVF--------GEFGSGKTQLAHT-------L----AVMVQLPPEEGGLNGSVIWIDTENTFRP 179 (349)
T ss_dssp HHHHHHTSSEESSEEEEEE--------ESTTSSHHHHHHH-------H----HHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred HHHHHhcCCCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence 45554 6899999999999 999 99 7776 5 5555 4554 44 22111 1
Q ss_pred CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHH
Q psy11400 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA 246 (298)
Q Consensus 167 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiA 246 (298)
+++++++|++.++..++.+|+.+... .-|.+|+|++.++
T Consensus 180 ~~i~~i~q~~~~~~~~v~~ni~~~~~-----------------------------------------~~~~~~~~~l~~~ 218 (349)
T 1pzn_A 180 ERIREIAQNRGLDPDEVLKHIYVARA-----------------------------------------FNSNHQMLLVQQA 218 (349)
T ss_dssp HHHHHHHHTTTCCHHHHGGGEEEEEC-----------------------------------------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhhCEEEEec-----------------------------------------CChHHHHHHHHHH
Confidence 23444444443333334444333210 0145566666666
Q ss_pred HHHh-------cCCCEEEEeccccCCCHHH------------HHHHHH----HHHhcCcEEEEEecCcch
Q psy11400 247 RLFY-------HRPQFAILDECTSAVSVDV------------EGSMYE----YCREVGITLFTVSHRKSL 293 (298)
Q Consensus 247 RaL~-------~~P~iliLDEPTs~LD~~~------------~~~i~~----~l~~~~~TiIiitH~l~~ 293 (298)
++++ .+|+++|+||||+++|+.. ...+.. +.++.++|+|+++|....
T Consensus 219 ~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~ 288 (349)
T 1pzn_A 219 EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR 288 (349)
T ss_dssp HHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred HHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc
Confidence 6666 7899999999999998852 223333 233458999999998653
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.05 E-value=4.1e-12 Score=109.01 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=83.6
Q ss_pred CcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---------cCCCcEEEEcCcCCCCCC
Q psy11400 115 ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---------PPRGKLFYVPQRPYMTLG 181 (298)
Q Consensus 115 g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---------~~r~~i~~v~Q~~~l~~~ 181 (298)
|++++|+ ||| || |+++ + +|+++ ++| +.. ..+++++|++|+. .+
T Consensus 1 G~~i~i~--------G~nG~GKTTll~~-------l----~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g 56 (189)
T 2i3b_A 1 ARHVFLT--------GPPGVGKTTLIHK-------A----SEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SG 56 (189)
T ss_dssp CCCEEEE--------SCCSSCHHHHHHH-------H----HHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TS
T ss_pred CCEEEEE--------CCCCChHHHHHHH-------H----Hhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---cc
Confidence 7899999 999 99 8888 7 77777 777 532 2467799999986 22
Q ss_pred CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH-HHHH---HHhcCCCEEE
Q psy11400 182 TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV-AMAR---LFYHRPQFAI 257 (298)
Q Consensus 182 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl-aiAR---aL~~~P~ili 257 (298)
+ ++++.... . ...+ ... -.....++..+|+|||+++ ++++ |++.+|+++|
T Consensus 57 ~-~~~l~~~~-------~--------------~~~~-~~~---~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvli 110 (189)
T 2i3b_A 57 T-RGPLSRVG-------L--------------EPPP-GKR---ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV 110 (189)
T ss_dssp C-EEEEEECC-------C--------------CCCS-SSC---CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEE
T ss_pred c-eehhhccc-------c--------------cCCc-ccc---ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEE
Confidence 1 11111000 0 0000 000 0011123567999999998 4455 6899999999
Q ss_pred Eec--cccCCCHHHHHHHHHHHHhcCcEEE----EEecCc
Q psy11400 258 LDE--CTSAVSVDVEGSMYEYCREVGITLF----TVSHRK 291 (298)
Q Consensus 258 LDE--PTs~LD~~~~~~i~~~l~~~~~TiI----iitH~l 291 (298)
||| ||..+|....+.+.++++.. .++| .++||.
T Consensus 111 lDE~g~~~~~~~~~~~~l~~~l~~~-~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 111 IDEIGKMELFSQLFIQAVRQTLSTP-GTIILGTIPVPKGK 149 (189)
T ss_dssp ECCCSTTTTTCSHHHHHHHHHHHCS-SCCEEEECCCCCSS
T ss_pred EeCCCccccccHHHHHHHHHHHhCC-CcEEEEEeecCCCC
Confidence 999 89989999999999998864 3444 344986
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.02 E-value=2.9e-10 Score=99.59 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccccCCC-----HHHHHHHHHHH---HhcCcEEEEEecCcchh
Q psy11400 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVS-----VDVEGSMYEYC---REVGITLFTVSHRKSLW 294 (298)
Q Consensus 236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD-----~~~~~~i~~~l---~~~~~TiIiitH~l~~~ 294 (298)
+.++.+....+..-..+|++++|||||+++| +...+.+.+++ ++.|+|+|++||+++.+
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 4455555555555568999999999999997 45555455544 45699999999998765
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.01 E-value=8.5e-10 Score=95.24 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHHhcCCC--EEEEeccccCC--CHHHHHHHHHHH----HhcCcEEEEEecCc
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQ--FAILDECTSAV--SVDVEGSMYEYC----REVGITLFTVSHRK 291 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~--iliLDEPTs~L--D~~~~~~i~~~l----~~~~~TiIiitH~l 291 (298)
..|.++.++...+.+...+|+ ++++||||+.+ |+.....+.+.+ ++.++|+|+++|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 459999999888888888999 99999999888 876555555444 44589999999998
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.00 E-value=1.6e-12 Score=130.09 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=82.9
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeee----------eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDY----------MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMT 145 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~i----------sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~ 145 (298)
.+.++|+++.|+....+ +++.+ +|+++. ++|+ ||| || |+++
T Consensus 10 ~i~~~~l~~~~~~~~r~-------ll~~id~l~~~gv~~~l~lp~---iaIv--------G~nGsGKSTLL~~------- 64 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRP-------CIDLIDSLRALGVEQDLALPA---IAVI--------GDQSSGKSSVLEA------- 64 (608)
T ss_dssp ----------CHHHHHH-------HHHHHHHHHHHSCCSSCCCCC---EECC--------CCTTSCHHHHHHH-------
T ss_pred hhhhhhhhHHHHHHHHH-------HHHHHHHHHhCCCCCcccCCe---EEEE--------CCCCChHHHHHHH-------
Confidence 47889999998532211 44433 366665 9999 999 99 9999
Q ss_pred ccccccccccc-CCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400 146 LGTLRDQLWPL-FGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEY 209 (298)
Q Consensus 146 l~~~~~~l~~~-~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~ 209 (298)
+ .|+..| ++|.|+. ..++.++|+||++.+++ .|+++|+.++..
T Consensus 65 I----~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~----------------- 123 (608)
T 3szr_A 65 L----SGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN----------------- 123 (608)
T ss_dssp H----HSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH-----------------
T ss_pred H----hCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH-----------------
Confidence 8 888877 7888642 13457999999987654 578887754210
Q ss_pred HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEecc------ccCCCHHHHHHHHHHHHh----
Q psy11400 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC------TSAVSVDVEGSMYEYCRE---- 279 (298)
Q Consensus 210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEP------Ts~LD~~~~~~i~~~l~~---- 279 (298)
.++.. ...+| ++++.++.+....|+++++||| |++||+.....+.+++++
T Consensus 124 --~~~~~---------------~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~ 183 (608)
T 3szr_A 124 --AIAGE---------------GMGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR 183 (608)
T ss_dssp --HHHCS---------------SSCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS
T ss_pred --HhcCC---------------ccccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 00000 00011 1222223333458999999999 999999888888777665
Q ss_pred -cCcEEEEEecCcchh
Q psy11400 280 -VGITLFTVSHRKSLW 294 (298)
Q Consensus 280 -~~~TiIiitH~l~~~ 294 (298)
.+.++++++|+++.+
T Consensus 184 ~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 184 QETISLVVVPSNVDIA 199 (608)
T ss_dssp SSCCEEEEEESSSCTT
T ss_pred CCCCceEEEeccchhc
Confidence 268899999998754
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.84 E-value=1e-08 Score=87.98 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=43.9
Q ss_pred CCChhH--HHHHHHHHHHhcC-CCEEEEeccccCCCHHH--------HHH----HHHHHHhcCcEEEEEecCcc
Q psy11400 234 VLSGGE--KQRVAMARLFYHR-PQFAILDECTSAVSVDV--------EGS----MYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 234 ~LSgGq--kQRlaiARaL~~~-P~iliLDEPTs~LD~~~--------~~~----i~~~l~~~~~TiIiitH~l~ 292 (298)
.+|+++ +|+++.+++++.+ |+++|+||||+.+|+.. ... +.++.++.++|+|+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 455554 6788899999986 99999999999998632 122 33344456999999999765
No 117
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.83 E-value=3.3e-11 Score=110.05 Aligned_cols=122 Identities=11% Similarity=0.017 Sum_probs=80.3
Q ss_pred eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHc
Q psy11400 113 RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI 188 (298)
Q Consensus 113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~ 188 (298)
+++.+++|+ |+| || |.+. | .+++.+. | ..++.+.+|+|+++++..+.++|+.
T Consensus 29 ~~~~ii~I~--------G~sGsGKSTla~~-------L----~~~l~~~-g----~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFS--------GPQGSGKSFTSIQ-------I----YNHLMEK-Y----GGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHH-H----GGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHhhhc-C----CCCceEEEeccccccCChHHHHHHh
Confidence 456789999 999 99 8777 6 6665442 1 0133466779999999889999987
Q ss_pred cCCcchhh-----hhcCCCHHHHHHHHHHcCCchhhhhcCCcccc-------cccCCCCChhHHHHHHHH--HHHhcCCC
Q psy11400 189 YPHTKEDM-----IQKGITDADLTEYLQKVQLGYILNREKGWDTV-------ADWIDVLSGGEKQRVAMA--RLFYHRPQ 254 (298)
Q Consensus 189 ~~~~~~~~-----~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~-------~~~~~~LSgGqkQRlaiA--RaL~~~P~ 254 (298)
++...... .....+.+.+.+.++.+.- |+++. -.+...+||||+||+++| +++ +|+
T Consensus 85 ~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~--------g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~ 154 (290)
T 1odf_A 85 EQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFN--------NNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVD 154 (290)
T ss_dssp HHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC--------------CCEEEECCEETTHHHHTCEECSSCEEEES--SCS
T ss_pred ccccccchhhhccCcchhHHHHHHHHHHHhhc--------cCccccCcceeeccCccccCCccccccccccceEc--CCC
Confidence 64210000 0112234555566655432 22211 123568999999999997 555 999
Q ss_pred EEEEeccccCCCHH
Q psy11400 255 FAILDECTSAVSVD 268 (298)
Q Consensus 255 iliLDEPTs~LD~~ 268 (298)
|+|+||+|+++|+.
T Consensus 155 IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 155 IFILEGWFLGFNPI 168 (290)
T ss_dssp EEEEEESSTTCCCC
T ss_pred EEEEeCccccCCcc
Confidence 99999999999974
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.80 E-value=7.9e-12 Score=117.33 Aligned_cols=68 Identities=13% Similarity=-0.055 Sum_probs=48.1
Q ss_pred ceeeeeEEEeC--CcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC----ceeecc---------
Q psy11400 104 SFFDYMFGVRG--ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG----GTVTKP--------- 164 (298)
Q Consensus 104 ~l~~isl~i~~--g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~----G~i~~~--------- 164 (298)
+...++++|.+ |++++|+ |+| || |+++ | +|+++|++ |++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~Iv--------G~nGsGKSTLlk~-------L----~gl~~~~~~~e~G~i~i~~~~~~~~~~ 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAIL--------GGESSGKSVLVNK-------L----AAVFNTTSAWEYGREFVFEKLGGDEQA 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEE--------CCTTSHHHHHHHH-------H----HHHTTCEEECCTTHHHHHHSSSSCTTS
T ss_pred ChhhCCHHHHHhhhCeEEEE--------CCCCCCHHHHHHH-------H----HHHhCCCcchhhHHHHHHhhcCCCccc
Confidence 34679999999 9999999 999 99 9999 8 89988888 765321
Q ss_pred --CC--CcEEEEcCcCCCCCCCHHHHHccC
Q psy11400 165 --PR--GKLFYVPQRPYMTLGTLRDQVIYP 190 (298)
Q Consensus 165 --~r--~~i~~v~Q~~~l~~~tv~eni~~~ 190 (298)
.. .+|++++|++.++..|+++|+.+.
T Consensus 218 ~~~~~~~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 218 MQYSDYPQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CChhHHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 00 225566665554455666665543
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.78 E-value=2e-09 Score=101.47 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=76.9
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC-Cceeecc-------CCCcEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF-GGTVTKP-------PRGKLFY 171 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~-~G~i~~~-------~r~~i~~ 171 (298)
++++++ +++|+.++|+ ||| || ++++ + .++++|. +|+|... .+..+++
T Consensus 127 ~l~~l~--~~~g~~i~iv--------G~~GsGKTTll~~-------l----~~~~~~~~~g~I~~~e~~~e~~~~~~~~~ 185 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVT--------GPTGSGKSTTIAS-------M----IDYINQTKSYHIITIEDPIEYVFKHKKSI 185 (372)
T ss_dssp SHHHHT--TSSSEEEEEE--------CSSSSSHHHHHHH-------H----HHHHHHHSCCEEEEEESSCCSCCCCSSSE
T ss_pred HHHHHh--hcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhcCcCCCcEEEEecccHhhhhccCceE
Confidence 566655 7899999999 999 99 8888 7 8888887 7887321 1222333
Q ss_pred EcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhc
Q psy11400 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251 (298)
Q Consensus 172 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~ 251 (298)
|+|.. ++++ +..| +.+|+++|..
T Consensus 186 v~Q~~------------------------------------~g~~---------------~~~~------~~~l~~~L~~ 208 (372)
T 2ewv_A 186 VNQRE------------------------------------VGED---------------TKSF------ADALRAALRE 208 (372)
T ss_dssp EEEEE------------------------------------BTTT---------------BSCS------HHHHHHHTTS
T ss_pred EEeee------------------------------------cCCC---------------HHHH------HHHHHHHhhh
Confidence 33320 1111 1234 4699999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
+|+++++|||+ |++....+.+.. ..|.++++++|..+..
T Consensus 209 ~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 209 DPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCSHH
T ss_pred CcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcchHH
Confidence 99999999999 777655555544 3489999999987643
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.64 E-value=1.8e-09 Score=101.28 Aligned_cols=128 Identities=12% Similarity=-0.062 Sum_probs=87.2
Q ss_pred EEeeeeEe---cCCCCCCCCCCcccce---------eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccc
Q psy11400 82 GRLGITLG---LRSGGLGFDSRWGRSF---------FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMT 145 (298)
Q Consensus 82 ~~~~v~~~---~~~~~~~~~~~~~~~l---------~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~ 145 (298)
.|++|+|+ |+....+ +| +++||.+++|+.++|+ ||| || |+++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~-------vL~~~~~~~~~~~l~~~i~~G~~i~iv--------G~sGsGKSTll~~------- 194 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQE-------LLALKEAGDYMSFLRRAVQLERVIVVA--------GETGSGKTTLMKA------- 194 (361)
T ss_dssp TTSCCCCSCSCCCHHHHH-------HHHHHHHTCHHHHHHHHHHTTCCEEEE--------ESSSSCHHHHHHH-------
T ss_pred CcCccccccccccchhHH-------HHhhhhhHHHHHHHHHHHhcCCEEEEE--------CCCCCCHHHHHHH-------
Confidence 78888888 7531111 55 9999999999999999 999 99 9999
Q ss_pred cccccccccccCCceeecc---------CCCcEEEEc-CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400 146 LGTLRDQLWPLFGGTVTKP---------PRGKLFYVP-QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215 (298)
Q Consensus 146 l~~~~~~l~~~~~G~i~~~---------~r~~i~~v~-Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 215 (298)
+ .++++|++|.|+.. .++.++|++ |++.+
T Consensus 195 l----~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------------------------------------- 233 (361)
T 2gza_A 195 L----MQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE------------------------------------- 233 (361)
T ss_dssp H----HTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------------------------------------
T ss_pred H----HhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-------------------------------------
Confidence 8 99999999988542 123344554 33210
Q ss_pred chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
.++++..++-.|+.++..+|+.+++||++.+ +..+ +.+.+.....|++.++|..+..
T Consensus 234 ------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~~~ 290 (361)
T 2gza_A 234 ------------------EENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGSCE 290 (361)
T ss_dssp -----------------------CCHHHHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSSHH
T ss_pred ------------------ccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCCHH
Confidence 0123445788889999999999999999962 3322 3333333345789999987643
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.62 E-value=1.1e-09 Score=95.95 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=73.9
Q ss_pred eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc--CCceeec---cC----CCcEEEEc
Q psy11400 107 DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL--FGGTVTK---PP----RGKLFYVP 173 (298)
Q Consensus 107 ~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~--~~G~i~~---~~----r~~i~~v~ 173 (298)
.-.-..++|++++|+ ||| || |+++ + .|+.+| ..|.+.. +. +..++|+|
T Consensus 8 ~~~~~~~~G~ii~l~--------GpsGsGKSTLlk~-------L----~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~f 68 (219)
T 1s96_A 8 HHHHHMAQGTLYIVS--------APSGAGKSSLIQA-------L----LKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFF 68 (219)
T ss_dssp -------CCCEEEEE--------CCTTSCHHHHHHH-------H----HHHSCTTTEEECCCEECSCCCTTCCBTTTBEE
T ss_pred cccccCCCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCCCCceEEEEEecCCCCCcccccCceEEE
Confidence 334567899999999 999 99 9998 7 788775 5666532 11 23577888
Q ss_pred CcCCCCCC-CH----HHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400 174 QRPYMTLG-TL----RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 174 Q~~~l~~~-tv----~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa 248 (298)
|++..|.. ++ .||+.+. ..+.|-.+++ ++.
T Consensus 69 q~~~~f~~~~~~~~f~E~~~~~------------------------------------------~~~yg~~~~~---v~~ 103 (219)
T 1s96_A 69 VNHDEFKEMISRDAFLEHAEVF------------------------------------------GNYYGTSREA---IEQ 103 (219)
T ss_dssp CCHHHHHHHHHTTCEEEEEEET------------------------------------------TEEEEEEHHH---HHH
T ss_pred CCHHHHHHHHhcCHHHHHHHHH------------------------------------------hccCCCCHHH---HHH
Confidence 87633211 11 1111110 0011111222 344
Q ss_pred HhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400 249 FYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295 (298)
Q Consensus 249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~ 295 (298)
++..++++||| ||+.....+.+.+.+ ++||++++|+++.+.
T Consensus 104 ~l~~G~illLD-----LD~~~~~~i~~~l~~-~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 104 VLATGVDVFLD-----IDWQGAQQIRQKMPH-ARSIFILPPSKIELD 144 (219)
T ss_dssp HHTTTCEEEEE-----CCHHHHHHHHHHCTT-CEEEEEECSSHHHHH
T ss_pred HHhcCCeEEEE-----ECHHHHHHHHHHccC-CEEEEEECCCHHHHH
Confidence 55668999999 999999999998874 899999999988654
No 122
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.57 E-value=2.2e-10 Score=96.71 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=64.4
Q ss_pred cEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC---CceeeccC--------------C-CcEE---
Q psy11400 116 LNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF---GGTVTKPP--------------R-GKLF--- 170 (298)
Q Consensus 116 ~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~---~G~i~~~~--------------r-~~i~--- 170 (298)
++++|+ |+| || |+++ + .+++++. .|.|.... | ++++
T Consensus 3 ~~v~Iv--------G~SGsGKSTL~~~-------L----~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~ 63 (171)
T 2f1r_A 3 LILSIV--------GTSDSGKTTLITR-------M----MPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADV 63 (171)
T ss_dssp CEEEEE--------ESCHHHHHHHHHH-------H----HHHHHHTTCCEEEEEC------------CHHHHHHHHTCEE
T ss_pred eEEEEE--------CCCCCCHHHHHHH-------H----HHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCce
Confidence 578999 999 99 8888 7 8888887 67764211 1 2345
Q ss_pred -EEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccccCCCCChhHHHHHHHHHH
Q psy11400 171 -YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 171 -~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~~~~~LSgGqkQRlaiARa 248 (298)
+++|++++| +. . ...+ . .+++.+++.+ ..|+|+....+ |||||+||++||||
T Consensus 64 ~~~~~~~~~~-------i~----------~-~~~~-~-----~a~l~~~i~~~l~g~dt~i~Eg--lSgGq~qri~lARa 117 (171)
T 2f1r_A 64 VIASPVKLAF-------IR----------R-VSEE-E-----GNDLDWIYERYLSDYDLVITEG--FSKAGKDRIVVVKK 117 (171)
T ss_dssp EEECSSEEEE-------EE----------E-CCHH-H-----HTCHHHHHHHHTTTCSEEEEES--CGGGCCCEEEECSS
T ss_pred EEECCCcEEE-------Ee----------c-CChh-h-----hhCHHHHHHhhCCCCCEEEECC--cCCCCCcEEEEEec
Confidence 667766543 00 0 0111 1 4455565554 33788876543 99999999999999
Q ss_pred HhcCCCEE
Q psy11400 249 FYHRPQFA 256 (298)
Q Consensus 249 L~~~P~il 256 (298)
++.+|++.
T Consensus 118 ll~~p~i~ 125 (171)
T 2f1r_A 118 PEEVEHFR 125 (171)
T ss_dssp GGGGGGGC
T ss_pred ccCCCccC
Confidence 99999873
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=7.9e-09 Score=98.91 Aligned_cols=174 Identities=16% Similarity=0.086 Sum_probs=99.1
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcE--EEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALN--LLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL 153 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~--~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l 153 (298)
.+++++ ++.|+ .. .++++||++++|++ ++|+ |+| || |+++ | .|+
T Consensus 16 ~l~~~~-~~~y~--~~--------~L~~vsl~i~~Gei~~vaLv--------G~nGaGKSTLln~-------L----~G~ 65 (427)
T 2qag_B 16 TVPLAG-HVGFD--SL--------PDQLVNKSVSQGFCFNILCV--------GETGLGKSTLMDT-------L----FNT 65 (427)
T ss_dssp -CCCCC-CC-CC------------CHHHHHHSCC-CCEEEEEEE--------CSTTSSSHHHHHH-------H----HTS
T ss_pred eEEEee-EEEEC--Ce--------ecCCCceEecCCCeeEEEEE--------CCCCCCHHHHHHH-------H----hCc
Confidence 355666 66673 22 38999999999999 9999 999 99 9998 6 554
Q ss_pred cccCCce-ee----ccCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcC----CCHHHHHHHHHHc-CCchhhhhc
Q psy11400 154 WPLFGGT-VT----KPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKG----ITDADLTEYLQKV-QLGYILNRE 222 (298)
Q Consensus 154 ~~~~~G~-i~----~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~----~~~~~i~~~l~~~-~l~~~~~~~ 222 (298)
. ..|. +. ...++.++|++|++.++ ..|+.||+.++.......... .-...+.+++... ++..-+ .
T Consensus 66 ~--l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l--~ 141 (427)
T 2qag_B 66 K--FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVL--H 141 (427)
T ss_dssp C--C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCC--C
T ss_pred c--ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhh--c
Confidence 2 1221 11 01134699999998765 469999998875321100000 0012333444433 322100 0
Q ss_pred CCcccc--------cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecC
Q psy11400 223 KGWDTV--------ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHR 290 (298)
Q Consensus 223 ~g~d~~--------~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~ 290 (298)
...|.. .+....|+... +.++++|..+++++++|+|+..|.+.....+.+.++ ..|.+|+.++.+
T Consensus 142 ~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 142 TYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred ccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 001111 11123566655 799999999999999999999998876665555444 358888888764
No 124
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.50 E-value=2.1e-09 Score=100.83 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=72.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc-cCCceeecc--------CCCcEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP-LFGGTVTKP--------PRGKLF 170 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~-~~~G~i~~~--------~r~~i~ 170 (298)
-++++++. .+|++++|+ |+| || |+++ | .|..+ +..|+|... .+..++
T Consensus 205 gl~~L~~~-~~G~~~~lv--------G~sG~GKSTLln~-------L----~g~~~~~~~G~I~~~~G~g~~tt~~~~i~ 264 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFA--------GQSGVGKSSLLNA-------L----LGLQNEILTNDVSNVSGLGQHTTTAARLY 264 (358)
T ss_dssp THHHHHHH-HTTSEEEEE--------CCTTSSHHHHHHH-------H----HCCSSCCCCC-------------CCCEEE
T ss_pred CHHHHHHh-cCCCEEEEE--------CCCCccHHHHHHH-------H----hccccccccCCccccCCCCccceEEEEEE
Confidence 46777775 489999999 999 99 9999 7 78887 888887532 345799
Q ss_pred EEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHH----HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHH
Q psy11400 171 YVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDAD----LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAM 245 (298)
Q Consensus 171 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~----i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlai 245 (298)
++||+++++. .+++++..+. ...++ +.++++.+++.++.+. ...+|| ||+||++|
T Consensus 265 ~v~q~~~l~dtpgv~e~~l~~----------l~~~e~~~~~~e~l~~~gl~~f~~~---------~~~~lS-G~~~r~al 324 (358)
T 2rcn_A 265 HFPHGGDVIDSPGVREFGLWH----------LEPEQITQGFVEFHDYLGHCKYRDC---------KHDADP-GCAIREAV 324 (358)
T ss_dssp ECTTSCEEEECHHHHTCCCCC----------CCHHHHHHTSGGGGGGTTCSSSTTC---------CSSSCT-TCHHHHHH
T ss_pred EECCCCEecCcccHHHhhhcC----------CCHHHHHHHHHHHHHHcCCchhcCC---------CcccCC-HHHHHHHH
Confidence 9999987654 3777742221 22222 3345555565544443 357899 99999999
Q ss_pred HHHHh
Q psy11400 246 ARLFY 250 (298)
Q Consensus 246 ARaL~ 250 (298)
|++++
T Consensus 325 a~gli 329 (358)
T 2rcn_A 325 ENGAI 329 (358)
T ss_dssp HHTSS
T ss_pred HhcCC
Confidence 98864
No 125
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.46 E-value=2.4e-08 Score=95.42 Aligned_cols=153 Identities=16% Similarity=0.068 Sum_probs=83.5
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCC
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTL 180 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~ 180 (298)
-++++|+++.|+.++|+ |++ || |++. + .+..+...+.........+++++++.. ..
T Consensus 147 ~~~i~lelk~g~~VgLV--------G~~gAGKSTLL~~-------L----sg~~~~i~~~~ftTl~p~~G~V~~~~~-~~ 206 (416)
T 1udx_A 147 KRRLRLELMLIADVGLV--------GYPNAGKSSLLAA-------M----TRAHPKIAPYPFTTLSPNLGVVEVSEE-ER 206 (416)
T ss_dssp EEEEEEEECCSCSEEEE--------CCGGGCHHHHHHH-------H----CSSCCEECCCTTCSSCCEEEEEECSSS-CE
T ss_pred EeeeeeEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HcCCccccCcccceecceeeEEEecCc-ce
Confidence 47999999999999999 999 99 8888 5 444321111100112345777777541 01
Q ss_pred CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q psy11400 181 GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260 (298)
Q Consensus 181 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDE 260 (298)
.++.|...+...... ......... +.++ ..+.++... |.......+||+|++|++++|++|+.+|.++++
T Consensus 207 ~~l~DtpGli~~a~~--~~~L~~~fl-~~~e--ra~~lL~vv---Dls~~~~~~ls~g~~el~~la~aL~~~P~ILVl-- 276 (416)
T 1udx_A 207 FTLADIPGIIEGASE--GKGLGLEFL-RHIA--RTRVLLYVL---DAADEPLKTLETLRKEVGAYDPALLRRPSLVAL-- 276 (416)
T ss_dssp EEEEECCCCCCCGGG--SCCSCHHHH-HHHT--SSSEEEEEE---ETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE--
T ss_pred EEEEeccccccchhh--hhhhhHHHH-HHHH--HHHhhhEEe---CCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE--
Confidence 112221111100000 001111111 1111 111111110 100123457999999999999999999999999
Q ss_pred cccCCCHHHH---HHHHHHHHhcCcEEEEEec
Q psy11400 261 CTSAVSVDVE---GSMYEYCREVGITLFTVSH 289 (298)
Q Consensus 261 PTs~LD~~~~---~~i~~~l~~~~~TiIiitH 289 (298)
+.+|.... ..+.+.+++.+.+++.+|.
T Consensus 277 --NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 277 --NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp --ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred --ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 89987533 2333444445777776653
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.44 E-value=5.5e-10 Score=94.25 Aligned_cols=129 Identities=13% Similarity=-0.040 Sum_probs=72.6
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------CCCcEEEEcCcCC
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------PRGKLFYVPQRPY 177 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------~r~~i~~v~Q~~~ 177 (298)
.+++|++++|+ |+| || ++++ | ++. +..|.+... .+..++|++|++.
T Consensus 5 ~i~~g~~i~l~--------G~~GsGKSTl~~~-------L----a~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~ 63 (191)
T 1zp6_A 5 DDLGGNILLLS--------GHPGSGKSTIAEA-------L----ANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ 63 (191)
T ss_dssp -CCTTEEEEEE--------ECTTSCHHHHHHH-------H----HTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH
T ss_pred CCCCCeEEEEE--------CCCCCCHHHHHHH-------H----Hhc--cCCCeEEEcccchhhhhhcccccCCccchhh
Confidence 57899999999 999 99 8888 6 665 456654321 1223566666543
Q ss_pred CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400 178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI 257 (298)
Q Consensus 178 l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~ili 257 (298)
...++.+|+.+..... ...+. ...++.++..+++..+.. ....+..+|+|++|++++||++.++|+++
T Consensus 64 -~~~~v~~~l~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~-------~~~~~~~ls~~~~~~v~~~R~~~r~~~~l- 131 (191)
T 1zp6_A 64 -QNRMIMQIAADVAGRY--AKEGY-FVILDGVVRPDWLPAFTA-------LARPLHYIVLRTTAAEAIERCLDRGGDSL- 131 (191)
T ss_dssp -HHHHHHHHHHHHHHHH--HHTSC-EEEECSCCCTTTTHHHHT-------TCSCEEEEEEECCHHHHHHHHHTTCTTSC-
T ss_pred -hhHHHHHHHHHHHHHH--hccCC-eEEEeccCcHHHHHHHHh-------cCCCeEEEEecCCHHHHHHHHHhcCCCcc-
Confidence 2346666664321000 00000 000000000011111110 01124579999999999999999999876
Q ss_pred EeccccCCCHHHHHHHHHHHHh
Q psy11400 258 LDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 258 LDEPTs~LD~~~~~~i~~~l~~ 279 (298)
+|+...+.+++.++.
T Consensus 132 -------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 132 -------SDPLVVADLHSQFAD 146 (191)
T ss_dssp -------CCHHHHHHHHHHTTC
T ss_pred -------CCHHHHHHHHHHHhc
Confidence 578777777776654
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.42 E-value=1.6e-08 Score=98.28 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=89.7
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc----------------
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------------- 164 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------------- 164 (298)
-+++||++++|++++|+ |+| || ++++ | +|++++.+|+|...
T Consensus 283 ~~~Isl~i~~GeVI~LV--------GpNGSGKTTLl~~-------L----Agll~~~~G~V~l~g~D~~r~aa~eQL~~~ 343 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMV--------GVNGVGKTTTIGK-------L----ARQFEQQGKSVMLAAGDTFRAAAVEQLQVW 343 (503)
T ss_dssp BCCCCCCSCTTEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHTTCCEEEECCCTTCHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEE--------CCCcccHHHHHHH-------H----HHHhhhcCCeEEEecCcccchhhHHHHHHH
Confidence 46799999999999999 999 99 8888 7 89999999987531
Q ss_pred -CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHH
Q psy11400 165 -PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR 242 (298)
Q Consensus 165 -~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR 242 (298)
.+.+|+|++|++.++ ..++++|+.++.. ...+ + -+++.+|.. +... .|-.-.+|+
T Consensus 344 ~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~------~~~D---v-VLIDTaGrl---------~~~~----~lm~EL~ki 400 (503)
T 2yhs_A 344 GQRNNIPVIAQHTGADSASVIFDAIQAAKA------RNID---V-LIADTAGRL---------QNKS----HLMEELKKI 400 (503)
T ss_dssp HHHHTCCEECCSTTCCHHHHHHHHHHHHHH------TTCS---E-EEECCCCSC---------CCHH----HHHHHHHHH
T ss_pred HHhcCceEEecccCcCHHHHHHHHHHHHHh------cCCC---E-EEEeCCCcc---------chhh----hHHHHHHHH
Confidence 134589999988654 4588888876421 0110 0 001111111 0000 111223488
Q ss_pred HHHHHHHh-cCCC-EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400 243 VAMARLFY-HRPQ-FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289 (298)
Q Consensus 243 laiARaL~-~~P~-iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH 289 (298)
+.++|++. ..|. +++..+||++.|.. ..+..+.+..+.|.|++||
T Consensus 401 v~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 401 VRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 88999774 4574 55555588886543 2333333446899999999
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.36 E-value=1.4e-09 Score=96.01 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=76.9
Q ss_pred CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc---cccccCCceeecc---C----CCcEEEEcCcCCCC
Q psy11400 114 GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD---QLWPLFGGTVTKP---P----RGKLFYVPQRPYMT 179 (298)
Q Consensus 114 ~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~---~l~~~~~G~i~~~---~----r~~i~~v~Q~~~l~ 179 (298)
++++++|+ |+| || ++++ | + |+..++.|++... . ...+.+++|++.++
T Consensus 26 ~~~~i~l~--------G~~GsGKSTl~k~-------L----a~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (246)
T 2bbw_A 26 KLLRAVIL--------GPPGSGKGTVCQR-------I----AQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLV 86 (246)
T ss_dssp CCCEEEEE--------CCTTSSHHHHHHH-------H----HHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred CCcEEEEE--------CCCCCCHHHHHHH-------H----HHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCC
Confidence 47899999 999 99 8888 7 6 7777787876431 1 12244566766554
Q ss_pred C-CCHHHHHccCCc---chhh-h-hcCCCHHHHHHHHHHcCCch--hhhhcC--Ccccc-cccCCCCChhHHHHHHHHHH
Q psy11400 180 L-GTLRDQVIYPHT---KEDM-I-QKGITDADLTEYLQKVQLGY--ILNREK--GWDTV-ADWIDVLSGGEKQRVAMARL 248 (298)
Q Consensus 180 ~-~tv~eni~~~~~---~~~~-~-~~~~~~~~i~~~l~~~~l~~--~~~~~~--g~d~~-~~~~~~LSgGqkQRlaiARa 248 (298)
+ .++.+++..... .... . .......++..+......+- +++.+. .++.. ..++..||| |+ ||
T Consensus 87 ~~~~v~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~a 159 (246)
T 2bbw_A 87 PDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YN 159 (246)
T ss_dssp CHHHHHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cc
Confidence 3 477888754210 0000 0 01112222222221111110 000000 00111 124568999 66 78
Q ss_pred H-hcCCCEEEEe----ccccCCCHHHHHHHHHHH
Q psy11400 249 F-YHRPQFAILD----ECTSAVSVDVEGSMYEYC 277 (298)
Q Consensus 249 L-~~~P~iliLD----EPTs~LD~~~~~~i~~~l 277 (298)
+ +.+|++++|| |||+++|......+.+.+
T Consensus 160 l~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 160 LDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARL 193 (246)
T ss_dssp TTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH
T ss_pred cccCCCcccccccccccccccCCCCcHHHHHHHH
Confidence 8 9999999999 999999987665554443
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.35 E-value=4.5e-08 Score=81.92 Aligned_cols=43 Identities=9% Similarity=-0.107 Sum_probs=36.0
Q ss_pred hcCCCEEEEecccc-CCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400 250 YHRPQFAILDECTS-AVSVDVEGSMYEYCRE---VGITLFTVSHRKS 292 (298)
Q Consensus 250 ~~~P~iliLDEPTs-~LD~~~~~~i~~~l~~---~~~TiIiitH~l~ 292 (298)
+.+|++|+||||++ ++|+.....+.+++.+ .++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999996 8999888888777653 4899999999864
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=1.6e-07 Score=86.59 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=36.9
Q ss_pred HhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400 249 FYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL 293 (298)
Q Consensus 249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~ 293 (298)
+..+|+++|+|||++ ||+.....+.+.+.+ .++++|++||+++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 788999999999999 999999999999886 37899999999763
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.34 E-value=1.9e-09 Score=92.97 Aligned_cols=116 Identities=11% Similarity=-0.024 Sum_probs=76.2
Q ss_pred EeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHH
Q psy11400 112 VRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQV 187 (298)
Q Consensus 112 i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni 187 (298)
.++|++++|+ ||| || |+++ | .+++++. | ..+++|+++.+.+..+..+++
T Consensus 19 ~~~g~~v~I~--------G~sGsGKSTl~~~-------l----~~~~~~~-g-------~~~g~v~~d~~~~~~~~~~~~ 71 (208)
T 3c8u_A 19 QPGRQLVALS--------GAPGSGKSTLSNP-------L----AAALSAQ-G-------LPAEVVPMDGFHLDNRLLEPR 71 (208)
T ss_dssp CCSCEEEEEE--------CCTTSCTHHHHHH-------H----HHHHHHT-T-------CCEEEEESGGGBCCHHHHGGG
T ss_pred CCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHhhc-C-------CceEEEecCCCcCCHHHHHHh
Confidence 5789999999 999 99 9998 8 8888765 4 358999999877665555554
Q ss_pred ccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc-cccCCCCChhHHHHHHHH-HHHhcCCCEEEEeccc
Q psy11400 188 IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV-ADWIDVLSGGEKQRVAMA-RLFYHRPQFAILDECT 262 (298)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~-~~~~~~LSgGqkQRlaiA-RaL~~~P~iliLDEPT 262 (298)
..... .. .........+.+.+..+...+. ++.. .+++..+|+||+||+++| ++++.++.++++|||.
T Consensus 72 ~~~~~-~~-~~~~~~~~~~~~~l~~l~~~~~------i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 72 GLLPR-KG-APETFDFEGFQRLCHALKHQER------VIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCGGG-TT-SGGGBCHHHHHHHHHHHHHCSC------EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ccccc-CC-CCchhhHHHHHHHHHHHhcCCc------eecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 31100 00 0111233444444443322111 1111 224567899999999998 9999999999999984
No 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.33 E-value=2.3e-10 Score=106.46 Aligned_cols=72 Identities=11% Similarity=-0.055 Sum_probs=57.5
Q ss_pred cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400 80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP 155 (298)
Q Consensus 80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~ 155 (298)
.++++|+++.|.. .. +++++||++++|++++|+ |+| || |++. + .|+++
T Consensus 29 ~ie~~~~~~~~~~-~~--------~l~~i~~~~~~g~~v~i~--------G~~GaGKSTLl~~-------l----~g~~~ 80 (337)
T 2qm8_A 29 LAESRRADHRAAV-RD--------LIDAVLPQTGRAIRVGIT--------GVPGVGKSTTIDA-------L----GSLLT 80 (337)
T ss_dssp HHTCSSHHHHHHH-HH--------HHHHHGGGCCCSEEEEEE--------CCTTSCHHHHHHH-------H----HHHHH
T ss_pred HHeeCCcccccCh-HH--------HHHhCCcccCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHhhh
Confidence 3667788888842 23 899999999999999999 999 99 8888 7 88888
Q ss_pred cCCceeec---------------cCCCcEEEEcCcCCCC
Q psy11400 156 LFGGTVTK---------------PPRGKLFYVPQRPYMT 179 (298)
Q Consensus 156 ~~~G~i~~---------------~~r~~i~~v~Q~~~l~ 179 (298)
|++|++.. ..+.++++++|++.+|
T Consensus 81 ~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 81 AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 88998731 1234689999998765
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.16 E-value=2.9e-06 Score=69.42 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=30.0
Q ss_pred HhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcE-EEEEecC
Q psy11400 249 FYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGIT-LFTVSHR 290 (298)
Q Consensus 249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~T-iIiitH~ 290 (298)
++.+|++|++|||++ ++...++.+++++. +.|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999998 55544666776654 34787 7888875
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.16 E-value=8.1e-06 Score=70.68 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=33.8
Q ss_pred CCChhHHHH-HHHHHHHh--cCCCEEEEeccccCCCHH-------HH-----HHHHH----HHHhcCcEEEEEecCcch
Q psy11400 234 VLSGGEKQR-VAMARLFY--HRPQFAILDECTSAVSVD-------VE-----GSMYE----YCREVGITLFTVSHRKSL 293 (298)
Q Consensus 234 ~LSgGqkQR-laiARaL~--~~P~iliLDEPTs~LD~~-------~~-----~~i~~----~l~~~~~TiIiitH~l~~ 293 (298)
..+..+... +.-++.++ .+|+++++|||++.+|+. .+ ..+.. +.++.++|||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 345555433 33333443 589999999999999875 21 22222 333459999999996543
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.15 E-value=4e-07 Score=84.31 Aligned_cols=132 Identities=10% Similarity=0.032 Sum_probs=82.1
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---C--------------CCcE
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---P--------------RGKL 169 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---~--------------r~~i 169 (298)
..++|++++++ ||| || +++. + +++++|.+|+|... . +-.+
T Consensus 125 ~~~~g~vi~lv--------G~nGaGKTTll~~-------L----ag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 125 KAEKPYVIMFV--------GFNGSGKTTTIAK-------L----ANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSCSSEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 44789999999 999 99 8888 7 99999999987421 0 1236
Q ss_pred EEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400 170 FYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMAR 247 (298)
Q Consensus 170 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR 247 (298)
.+++|...+++ .++++|+.++.. . +.+. +++..+..+. -..=..+.-.++|
T Consensus 186 ~~v~q~~~~~p~~~v~e~l~~~~~------~--------------~~d~vliDtaG~~~~-------~~~l~~eL~~i~r 238 (328)
T 3e70_C 186 KVIKHSYGADPAAVAYDAIQHAKA------R--------------GIDVVLIDTAGRSET-------NRNLMDEMKKIAR 238 (328)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHH------H--------------TCSEEEEEECCSCCT-------TTCHHHHHHHHHH
T ss_pred eEEeccccCCHHHHHHHHHHHHHh------c--------------cchhhHHhhccchhH-------HHHHHHHHHHHHH
Confidence 68888876653 578888765310 0 0000 1111110000 0111223334899
Q ss_pred HHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400 248 LFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK 291 (298)
Q Consensus 248 aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l 291 (298)
++..++.+++||.+|. .| ....+..+.++.+.|+|++||--
T Consensus 239 al~~de~llvLDa~t~-~~--~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 239 VTKPNLVIFVGDALAG-NA--IVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSCCCEEEEECGG
T ss_pred HhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcCCCEEEEeCcC
Confidence 9999999999996665 33 33334444445689999999954
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.12 E-value=2e-09 Score=103.00 Aligned_cols=120 Identities=18% Similarity=0.075 Sum_probs=78.0
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---c------------
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---P------------ 164 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---~------------ 164 (298)
+|+++ +. ++|++++|+ ||| || ++++ + .+++++.+|+|.. +
T Consensus 158 ~L~~l-~~-~~ggii~I~--------GpnGSGKTTlL~a-------l----lg~l~~~~g~I~~~ed~ie~~~~~~~q~~ 216 (418)
T 1p9r_A 158 NFRRL-IK-RPHGIILVT--------GPTGSGKSTTLYA-------G----LQELNSSERNILTVEDPIEFDIDGIGQTQ 216 (418)
T ss_dssp HHHHH-HT-SSSEEEEEE--------CSTTSCHHHHHHH-------H----HHHHCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred HHHHH-HH-hcCCeEEEE--------CCCCCCHHHHHHH-------H----HhhcCCCCCEEEEecccchhccCCcceEE
Confidence 56666 43 789999999 999 99 8888 7 8888888888642 1
Q ss_pred CCCcEEEEc---------CcCCCC--C-----CCHHHHHccCCcchhhh--hcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400 165 PRGKLFYVP---------QRPYMT--L-----GTLRDQVIYPHTKEDMI--QKGITDADLTEYLQKVQLGYILNREKGWD 226 (298)
Q Consensus 165 ~r~~i~~v~---------Q~~~l~--~-----~tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~d 226 (298)
.+.++++.+ |+|.+. . .|+.+++.+........ .+..+.....+.+..+++.... .
T Consensus 217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-~----- 290 (418)
T 1p9r_A 217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-I----- 290 (418)
T ss_dssp CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-H-----
T ss_pred EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-H-----
Confidence 122345544 888642 1 37888876532100000 0111222334456777876543 1
Q ss_pred cccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAI 257 (298)
Q Consensus 227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~ili 257 (298)
+.+|||||+|| |||+|+.+|++..
T Consensus 291 -----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 291 -----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred -----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 45899999999 9999999999876
No 137
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.10 E-value=8e-09 Score=95.16 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCc
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRK 291 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l 291 (298)
+||+||+||+..+++++.+|+++ ||| ..+.+.+++ .+.||+++||+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 68999999999999999999988 999 334444333 479999999964
No 138
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.06 E-value=2.3e-09 Score=92.03 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHH-HHhcCCCEEEEeccccCCCHHHHHHHHHHHH
Q psy11400 245 MAR-LFYHRPQFAILDECTSAVSVDVEGSMYEYCR 278 (298)
Q Consensus 245 iAR-aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~ 278 (298)
.|| +++.+|++++|||+|+++|.++++.+.+.+.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~ 150 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLA 150 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 566 7899999999999999999887777766543
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.03 E-value=2.2e-05 Score=74.49 Aligned_cols=41 Identities=10% Similarity=0.245 Sum_probs=28.6
Q ss_pred cCCCEEEEeccccCCCHHHH------------HHHH----HHHHhcCcEEEEEecCc
Q psy11400 251 HRPQFAILDECTSAVSVDVE------------GSMY----EYCREVGITLFTVSHRK 291 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~------------~~i~----~~l~~~~~TiIiitH~l 291 (298)
.+|+++++||||+.+|.... ..+. ++.++.++|||+|+|..
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 57999999999999986422 2233 33445699999999974
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.99 E-value=1.8e-07 Score=85.55 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=72.6
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---cC-----------CCcEEE
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---PP-----------RGKLFY 171 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---~~-----------r~~i~~ 171 (298)
+.+.+|++++++ ||| || |+++ + . +.+|..|+|.. .. .+.+||
T Consensus 160 ~~~l~G~i~~l~--------G~sG~GKSTLln~-------l----~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~ 219 (302)
T 2yv5_A 160 VDYLEGFICILA--------GPSGVGKSSILSR-------L----T-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSF 219 (302)
T ss_dssp HHHTTTCEEEEE--------CSTTSSHHHHHHH-------H----H-SCCCCCSCC---------CCCCEEEEEETTTEE
T ss_pred HhhccCcEEEEE--------CCCCCCHHHHHHH-------H----H-HhhCcccccccccCCCCCceeeEEEEEcCCCcE
Confidence 345679999999 999 99 8998 7 6 67778887753 10 125899
Q ss_pred EcCcCCC------CCCCHHHHH--ccCCc------chhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCC
Q psy11400 172 VPQRPYM------TLGTLRDQV--IYPHT------KEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 172 v~Q~~~l------~~~tv~eni--~~~~~------~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LS 236 (298)
++|.|.+ +..|+ +|+ .|+.. ...........+.+.++++.++|.+ ..++. +..||
T Consensus 220 v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~---------~~~ls 289 (302)
T 2yv5_A 220 VGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY---------LKIIK 289 (302)
T ss_dssp EESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH---------HHHTT
T ss_pred EEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH---------HHHHH
Confidence 9999954 24578 888 45410 0000011123457889999999975 44442 56899
Q ss_pred hhHHHHHHHHH
Q psy11400 237 GGEKQRVAMAR 247 (298)
Q Consensus 237 gGqkQRlaiAR 247 (298)
|.+++++.|||
T Consensus 290 ~~~~R~~~~~~ 300 (302)
T 2yv5_A 290 VYLEEIKELCR 300 (302)
T ss_dssp CCCTTHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 98899999987
No 141
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.92 E-value=5.5e-07 Score=74.69 Aligned_cols=78 Identities=12% Similarity=-0.101 Sum_probs=59.2
Q ss_pred EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400 83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG 158 (298)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~ 158 (298)
.+++++.|. +.. +++++||++++|++++|+ ||| || |+++ + +|+. |++
T Consensus 10 ~~~~~~~~g-~~~--------~l~~vsl~i~~Ge~v~L~--------G~nGaGKTTLlr~-------l----~g~l-~~~ 60 (158)
T 1htw_A 10 DEFSMLRFG-KKF--------AEILLKLHTEKAIMVYLN--------GDLGAGKTTLTRG-------M----LQGI-GHQ 60 (158)
T ss_dssp SHHHHHHHH-HHH--------HHHHHHHCCSSCEEEEEE--------CSTTSSHHHHHHH-------H----HHHT-TCC
T ss_pred CHHHHHHHH-HHH--------HHhccccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhC-CCC
Confidence 345666663 223 899999999999999999 999 99 9999 8 8888 889
Q ss_pred ceeeccCCC------cEEEEcCcCCCCCCCHHHHHcc
Q psy11400 159 GTVTKPPRG------KLFYVPQRPYMTLGTLRDQVIY 189 (298)
Q Consensus 159 G~i~~~~r~------~i~~v~Q~~~l~~~tv~eni~~ 189 (298)
|+|..+... .-.+++|++.++..|+.||+.+
T Consensus 61 G~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 61 GNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEF 97 (158)
T ss_dssp SCCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHH
T ss_pred CeEEECCEeeeeeccCCCcceeccccccCCcHHHHHH
Confidence 987543110 0027899987777789898853
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.84 E-value=1.5e-08 Score=99.33 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=93.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc--------CCCcEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------PRGKLFY 171 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------~r~~i~~ 171 (298)
+++++++.+++|+.++|+ ||| || ++++ + .++++|++|.++.. ....+++
T Consensus 249 ~l~~l~~~v~~g~~i~I~--------GptGSGKTTlL~a-------L----~~~i~~~~giitied~~E~~~~~~~~v~~ 309 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVV--------GETASGKTTTLNA-------I----MMFIPPDAKVVSIEDTREIKLYHENWIAE 309 (511)
T ss_dssp HHHHHHHHHHTTCCEEEE--------ESTTSSHHHHHHH-------H----GGGSCTTCCEEEEESSCCCCCCCSSEEEE
T ss_pred HHHHHHHHHhCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhCCCCCCEEEEcCcccccCCCCCeEEE
Confidence 778999999999999999 999 99 8888 7 88999999987531 1235677
Q ss_pred EcCcCCCCC-CCHHHHHccCCc--chhhhhcCCCHHHHHHHHHHcCCc-------------hhhhh----cCC-------
Q psy11400 172 VPQRPYMTL-GTLRDQVIYPHT--KEDMIQKGITDADLTEYLQKVQLG-------------YILNR----EKG------- 224 (298)
Q Consensus 172 v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~i~~~l~~~~l~-------------~~~~~----~~g------- 224 (298)
+.|...... .+..+++..... +....-......++..+++.+... +.+++ +.+
T Consensus 310 ~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 310 VTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp ECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred EeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 777654221 366666543211 000000011111222233222110 01111 001
Q ss_pred -cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE--EecCcchhh
Q psy11400 225 -WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT--VSHRKSLWT 295 (298)
Q Consensus 225 -~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi--itH~l~~~~ 295 (298)
++........+|+||+||.++|. + | |+|||+.....+++.+.+ .+.|+++ +||+++.+.
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence 11111223468999999977651 2 7 999998765544443332 3788875 899998654
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.83 E-value=4.1e-05 Score=69.59 Aligned_cols=136 Identities=12% Similarity=0.013 Sum_probs=84.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
+.++++++.|.. . . ++++|+ +|++++++ |++ || +... + ++++.+
T Consensus 77 ~~~~~l~~~~~~--~--------~-~~i~~~--~~~~i~i~--------g~~G~GKTT~~~~-------l----a~~~~~ 124 (295)
T 1ls1_A 77 TVYEALKEALGG--E--------A-RLPVLK--DRNLWFLV--------GLQGSGKTTTAAK-------L----ALYYKG 124 (295)
T ss_dssp HHHHHHHHHTTS--S--------C-CCCCCC--SSEEEEEE--------CCTTTTHHHHHHH-------H----HHHHHH
T ss_pred HHHHHHHHHHCC--C--------C-ceeecC--CCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHHH
Confidence 456778877742 1 2 568887 99999999 999 99 6666 6 787776
Q ss_pred CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400 157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS 236 (298)
Q Consensus 157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS 236 (298)
.+|++ .++-.++.-. ... ..+....+..++..+.. +...+
T Consensus 125 ~~~~v--------~l~~~d~~~~--~~~-------------------~ql~~~~~~~~l~~~~~-----------~~~~~ 164 (295)
T 1ls1_A 125 KGRRP--------LLVAADTQRP--AAR-------------------EQLRLLGEKVGVPVLEV-----------MDGES 164 (295)
T ss_dssp TTCCE--------EEEECCSSCH--HHH-------------------HHHHHHHHHHTCCEEEC-----------CTTCC
T ss_pred cCCeE--------EEecCCcccH--hHH-------------------HHHHHhcccCCeEEEEc-----------CCCCC
Confidence 66654 4444443100 000 01112233334332110 11234
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEecc-ccCCCHHHHHHHHHHHHh--cCcEEEEEe
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDEC-TSAVSVDVEGSMYEYCRE--VGITLFTVS 288 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEP-Ts~LD~~~~~~i~~~l~~--~~~TiIiit 288 (298)
..+.+|.+++++...+++++|+||| ++++|......+.+..+. ...+++++.
T Consensus 165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 4566899999998899999999999 999998877777665543 244544443
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.81 E-value=6.5e-06 Score=75.40 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=65.2
Q ss_pred eeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCH
Q psy11400 108 YMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTL 183 (298)
Q Consensus 108 isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv 183 (298)
++|..++|++++++ |++ || ++.. + ++.+.+.+|+ +.++..+++- ...
T Consensus 97 ~~~~~~~~~vi~iv--------G~~GsGKTTl~~~-------L----A~~l~~~g~k--------V~lv~~D~~r--~~a 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVV--------GVNGTGKTTSCGK-------L----AKMFVDEGKS--------VVLAAADTFR--AAA 147 (306)
T ss_dssp CCCCSSSCEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHTTCC--------EEEEEECTTC--HHH
T ss_pred CcccCCCCeEEEEE--------cCCCChHHHHHHH-------H----HHHHHhcCCE--------EEEEcccccc--HHH
Confidence 56667899999999 999 99 6666 6 7877766555 4444444310 000
Q ss_pred HHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH---HHHHHHhcCCCEEEEec
Q psy11400 184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV---AMARLFYHRPQFAILDE 260 (298)
Q Consensus 184 ~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl---aiARaL~~~P~iliLDE 260 (298)
.+++..+++..++.. ...+|+|+.|++ ++++|+..+|+++|+||
T Consensus 148 -------------------~eqL~~~~~~~gl~~--------------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDt 194 (306)
T 1vma_A 148 -------------------IEQLKIWGERVGATV--------------ISHSEGADPAAVAFDAVAHALARNKDVVIIDT 194 (306)
T ss_dssp -------------------HHHHHHHHHHHTCEE--------------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred -------------------HHHHHHHHHHcCCcE--------------EecCCccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 122344455555432 235689999999 99999999999999999
Q ss_pred ccc
Q psy11400 261 CTS 263 (298)
Q Consensus 261 PTs 263 (298)
|..
T Consensus 195 pg~ 197 (306)
T 1vma_A 195 AGR 197 (306)
T ss_dssp CCC
T ss_pred CCc
Confidence 975
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.43 E-value=6.6e-06 Score=74.94 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=57.5
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---c-----------CCCcEEE
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---P-----------PRGKLFY 171 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---~-----------~r~~i~~ 171 (298)
|++.+|++++++ ||| || |+++ + .|+.+|.+|+|.. . ..+.++|
T Consensus 164 f~~l~geiv~l~--------G~sG~GKSTll~~-------l----~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~ 224 (301)
T 1u0l_A 164 KEYLKGKISTMA--------GLSGVGKSSLLNA-------I----NPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY 224 (301)
T ss_dssp HHHHSSSEEEEE--------CSTTSSHHHHHHH-------H----STTCCCC-------------CCCSCCEEECTTSCE
T ss_pred HHHhcCCeEEEE--------CCCCCcHHHHHHH-------h----cccccccccceecccCCCCCceeeeEEEEcCCCCE
Confidence 456789999999 999 99 9999 8 8888888888753 1 0135899
Q ss_pred EcCcCCC-----------------CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhh
Q psy11400 172 VPQRPYM-----------------TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNR 221 (298)
Q Consensus 172 v~Q~~~l-----------------~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~ 221 (298)
|+|.|.+ +..|+ +|+.|+.... .....+++.++++.++|. +..++
T Consensus 225 v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 225 VVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp EESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHHHHHH
T ss_pred EEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHHHHHH
Confidence 9999842 23466 7777653210 122345788999999995 55444
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.40 E-value=1.3e-07 Score=87.47 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=54.6
Q ss_pred EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCC-------cEEEEeccCCcccCCCC--cc--eeecCccCccccccc
Q psy11400 81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA-------LNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTL 149 (298)
Q Consensus 81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g-------~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~ 149 (298)
++.++++..|.. .. +++++++.+++| +.++++ ||+ || |+++ +
T Consensus 19 lr~~~l~~~~g~-~~--------~~~~l~~~i~~~~~~~~~~~~~ll~--------Gp~G~GKTTLa~~-------i--- 71 (334)
T 1in4_A 19 LRPKSLDEFIGQ-EN--------VKKKLSLALEAAKMRGEVLDHVLLA--------GPPGLGKTTLAHI-------I--- 71 (334)
T ss_dssp TSCSSGGGCCSC-HH--------HHHHHHHHHHHHHHHTCCCCCEEEE--------SSTTSSHHHHHHH-------H---
T ss_pred cCCccHHHccCc-HH--------HHHHHHHHHHHHHhcCCCCCeEEEE--------CCCCCcHHHHHHH-------H---
Confidence 455566665632 22 889999999877 899999 999 99 8888 6
Q ss_pred ccccc----ccCCceeec-----------cCCCcEEEEcCcCCCCCCCHHHHHc
Q psy11400 150 RDQLW----PLFGGTVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVI 188 (298)
Q Consensus 150 ~~~l~----~~~~G~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~ 188 (298)
++.. .+.+|.+.. ..+..|.|++|...++. ++.|++.
T Consensus 72 -a~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 72 -ASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp -HHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred -HHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 5544 455555421 12457999999876654 6777663
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.36 E-value=0.00028 Score=64.11 Aligned_cols=116 Identities=12% Similarity=0.067 Sum_probs=68.2
Q ss_pred eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHc
Q psy11400 113 RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI 188 (298)
Q Consensus 113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~ 188 (298)
++|++++++ |+| || ++.. + ++.+.+..| .++.++.++++ ..+..+++
T Consensus 103 ~~g~vi~lv--------G~~GsGKTTl~~~-------L----A~~l~~~~G-------~~V~lv~~D~~--r~~a~eqL- 153 (296)
T 2px0_A 103 IHSKYIVLF--------GSTGAGKTTTLAK-------L----AAISMLEKH-------KKIAFITTDTY--RIAAVEQL- 153 (296)
T ss_dssp CCSSEEEEE--------ESTTSSHHHHHHH-------H----HHHHHHTTC-------CCEEEEECCCS--STTHHHHH-
T ss_pred CCCcEEEEE--------CCCCCCHHHHHHH-------H----HHHHHHhcC-------CEEEEEecCcc--cchHHHHH-
Confidence 479999999 999 99 6666 6 777766666 35889998873 22233332
Q ss_pred cCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHH
Q psy11400 189 YPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~ 268 (298)
....+..++... ...+ +..-+.++++ +.+|+++|+| |+|+|+.
T Consensus 154 ------------------~~~~~~~gl~~~--------------~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~ 196 (296)
T 2px0_A 154 ------------------KTYAELLQAPLE--------------VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFK 196 (296)
T ss_dssp ------------------HHHHTTTTCCCC--------------BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTT
T ss_pred ------------------HHHHHhcCCCeE--------------ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChh
Confidence 122222222110 0112 2334666665 4999999999 9999876
Q ss_pred HHHHHHHHHHh-----cCcEEEEE--ecCcchh
Q psy11400 269 VEGSMYEYCRE-----VGITLFTV--SHRKSLW 294 (298)
Q Consensus 269 ~~~~i~~~l~~-----~~~TiIii--tH~l~~~ 294 (298)
....+.++.+- ...+++++ +|..+.+
T Consensus 197 ~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~ 229 (296)
T 2px0_A 197 DPQYIDELKETIPFESSIQSFLVLSATAKYEDM 229 (296)
T ss_dssp SHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH
T ss_pred hHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH
Confidence 55444443221 12234444 8875433
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.34 E-value=1.7e-07 Score=84.56 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=76.8
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK 168 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~ 168 (298)
++++++|.+++| ++|+ ||+ || |+++ + ++...+ +.+... ..+.
T Consensus 35 ~l~~~~l~~~~G--vlL~--------Gp~GtGKTtLaka-------l----a~~~~~--~~i~i~g~~l~~~~~~~~~~~ 91 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLA--------GPPGCGKTLLAKA-------V----ANESGL--NFISVKGPELLNMYVGESERA 91 (274)
T ss_dssp HHHHTTCCCCSE--EEEE--------SSTTSCHHHHHHH-------H----HHHTTC--EEEEEETTTTCSSTTHHHHHH
T ss_pred HHHHcCCCCCCe--EEEE--------CCCCCcHHHHHHH-------H----HHHcCC--CEEEEEcHHHHhhhhhHHHHH
Confidence 789999999999 9999 999 99 8888 6 555433 233211 0123
Q ss_pred EEEEcCcC-CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHH
Q psy11400 169 LFYVPQRP-YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA 246 (298)
Q Consensus 169 i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiA 246 (298)
+++++|++ ... ..++.|++...... .. .... . ......++ ....|||||+||+.|+
T Consensus 92 i~~vf~~a~~~~p~i~~~Deid~~~~~-----r~--~~~~----~--~~~~~~~~---------~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 92 VRQVFQRAKNSAPCVIFFDEVDALCPR-----RS--DRET----G--ASVRVVNQ---------LLTEMDGLEARQQVFI 149 (274)
T ss_dssp HHHHHHHHHHTCSEEEEEETCTTTCC----------------------CTTHHHH---------HHHHHHTCCSTTCEEE
T ss_pred HHHHHHHHHhcCCCeEeeehhhhhhcc-----cC--CCcc----h--HHHHHHHH---------HHHhhhcccccCCEEE
Confidence 56666654 111 22334444322110 00 0000 0 01122222 2457999999999999
Q ss_pred HHHhcCCCEEEEeccccC------------CCHHHHHHHHHHHH
Q psy11400 247 RLFYHRPQFAILDECTSA------------VSVDVEGSMYEYCR 278 (298)
Q Consensus 247 RaL~~~P~iliLDEPTs~------------LD~~~~~~i~~~l~ 278 (298)
+|+..+|++| |||+.- -|...+..|++.+.
T Consensus 150 ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 9999999985 999752 26677777777654
No 149
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=2.4e-07 Score=77.93 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHH------HHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC-cchh
Q psy11400 236 SGGEKQRVAMAR------LFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR-KSLW 294 (298)
Q Consensus 236 SgGqkQRlaiAR------aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~-l~~~ 294 (298)
|+|++|++.++. +++.+|+...+|+ ++|+..... ++.+.+ .+.++|.+||. ++.+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~ 160 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNL 160 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhH
Confidence 889999988888 9999999888884 789876665 555543 36799999998 6554
No 150
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.15 E-value=5.8e-05 Score=75.16 Aligned_cols=145 Identities=13% Similarity=0.028 Sum_probs=86.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC-ceeec------cCCCcEEEE
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG-GTVTK------PPRGKLFYV 172 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~-G~i~~------~~r~~i~~v 172 (298)
+++++++.+++|+.++|+ ||+ || |++. + ++++++.. |.+.. .....++++
T Consensus 49 ~l~~l~~~i~~g~~vll~--------Gp~GtGKTtlar~-------i----a~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLI--------GEPGTGKSMLGQA-------M----AELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHHHHHHHHHTTCCEEEE--------CCTTSSHHHHHHH-------H----HHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred hHhhccccccCCCEEEEE--------eCCCCCHHHHHHH-------H----hccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 889999999999999999 999 99 8888 7 77777665 44322 123457777
Q ss_pred cCcCC----------------------CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccc
Q psy11400 173 PQRPY----------------------MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA 229 (298)
Q Consensus 173 ~Q~~~----------------------l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~ 229 (298)
|+... .+ ..++.+|+........ ....-.+......+.++. ++...
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~--~~~~v~~~~~~~~~L~G~---------~~~~~ 178 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT--KAPFIDATGAHAGALLGD---------VRHDP 178 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCS--SCCEEECTTCCHHHHHCE---------ECCCC
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCC--CCCEEEcCCCCHHhcCce---------EEech
Confidence 76430 00 0111222211110000 000000000000011111 11111
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 230 ~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
.+...+|+|++|++..++....++.+|+|||... |++.....+.+.+.+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1235699999999999999999999999999998 899999999998874
No 151
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.14 E-value=3.8e-05 Score=70.34 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=58.7
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec------cC---C---C-cEEEE
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------PP---R---G-KLFYV 172 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------~~---r---~-~i~~v 172 (298)
+++.+|++++|+ |+| || |++. | .|..++..|+|.. .. . + .++|+
T Consensus 168 ~~~~~G~~~~lv--------G~sG~GKSTLln~-------L----~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v 228 (307)
T 1t9h_A 168 IPHFQDKTTVFA--------GQSGVGKSSLLNA-------I----SPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLV 228 (307)
T ss_dssp GGGGTTSEEEEE--------ESHHHHHHHHHHH-------H----CC-------------------CCCCCEEEETTEEE
T ss_pred HhhcCCCEEEEE--------CCCCCCHHHHHHH-------h----cccccccccceeeecCCCcccccHHHHhhcCCEEE
Confidence 566799999999 999 99 9999 7 7887888887653 10 1 1 16999
Q ss_pred cCcCCCC-----CCCHHHHHc--cCCcc--------hhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCCh
Q psy11400 173 PQRPYMT-----LGTLRDQVI--YPHTK--------EDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237 (298)
Q Consensus 173 ~Q~~~l~-----~~tv~eni~--~~~~~--------~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSg 237 (298)
+|.|.+. ..|+ ||+. |+... ..-.......+.+.++++.+++.+..... ...|+.
T Consensus 229 ~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~---------y~~lls 298 (307)
T 1t9h_A 229 ADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH---------YVEFMT 298 (307)
T ss_dssp ESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH---------HHHHHH
T ss_pred ecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH---------HHHHHH
Confidence 9999653 2478 8883 33100 00000112345788999999997643221 235677
Q ss_pred hHHHH
Q psy11400 238 GEKQR 242 (298)
Q Consensus 238 GqkQR 242 (298)
|++||
T Consensus 299 ~~~~~ 303 (307)
T 1t9h_A 299 EIKDR 303 (307)
T ss_dssp HHHTT
T ss_pred HHhhc
Confidence 77773
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.12 E-value=2.8e-06 Score=77.65 Aligned_cols=55 Identities=16% Similarity=-0.111 Sum_probs=47.5
Q ss_pred CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEE-------------------eCCcEEEEeccCCcccCCCC--cc--
Q psy11400 78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGV-------------------RGALNLLWPLFGGTVTKPPR--GK-- 134 (298)
Q Consensus 78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i-------------------~~g~~~~i~~~~~~~~~G~s--GK-- 134 (298)
.+.|+++||++.|. + ++++++|.+ ++|++++|+ |+| ||
T Consensus 35 ~~~i~~~~v~~~y~---~--------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~--------G~~GsGKST 95 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---P--------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIA--------GSVAVGKST 95 (308)
T ss_dssp CTTCCHHHHHHTHH---H--------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEE--------ECTTSSHHH
T ss_pred ccccchHhHHHHHH---H--------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEE--------CCCCCCHHH
Confidence 45689999999993 3 899999988 999999999 999 99
Q ss_pred eeecCccCccccccccccccc--cCCceee
Q psy11400 135 LFYVPQRPYMTLGTLRDQLWP--LFGGTVT 162 (298)
Q Consensus 135 L~~~~~~~~~~l~~~~~~l~~--~~~G~i~ 162 (298)
|+++ + .++++ |++|++.
T Consensus 96 l~~~-------L----~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 96 TARV-------L----QALLSRWPEHRRVE 114 (308)
T ss_dssp HHHH-------H----HHHHTTSTTCCCEE
T ss_pred HHHH-------H----HHHHhhCCCCCeEE
Confidence 8888 7 88887 8888864
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.02 E-value=0.00092 Score=64.06 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=40.2
Q ss_pred CCCCChhHHHHHHHHHHHh--cCCCEEEEeccccCCCH--------HHHHHHH----HHHHhcCcEEEEEec
Q psy11400 232 IDVLSGGEKQRVAMARLFY--HRPQFAILDECTSAVSV--------DVEGSMY----EYCREVGITLFTVSH 289 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~--~~P~iliLDEPTs~LD~--------~~~~~i~----~~l~~~~~TiIiitH 289 (298)
...+|.+|.+ +.+|.+. ++|+++|+|+++...+. .....+. .+.++.+++||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3578999876 5667766 68999999999998742 1222333 333456999999999
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.75 E-value=3.8e-05 Score=75.04 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=41.8
Q ss_pred CCChhHHHHH----------HHHHHHhcCCC-EEEEeccccCCCHH---HHHHHHHHHH---hcCcEEEEEecCcc
Q psy11400 234 VLSGGEKQRV----------AMARLFYHRPQ-FAILDECTSAVSVD---VEGSMYEYCR---EVGITLFTVSHRKS 292 (298)
Q Consensus 234 ~LSgGqkQRl----------aiARaL~~~P~-iliLDEPTs~LD~~---~~~~i~~~l~---~~~~TiIiitH~l~ 292 (298)
.+|+||+|+. ++|+++...|. ++++||+++.++.. .++.+.++.+ ..|.++|++|||++
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 5788988753 35677778898 89999999988732 2333333433 34899999999997
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.014 Score=49.85 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=34.8
Q ss_pred HHHHHHHHHh--cCCCEEEEeccccCC--CHHH-H---HHHHHHHHhcCcEEEEEecCcch
Q psy11400 241 QRVAMARLFY--HRPQFAILDECTSAV--SVDV-E---GSMYEYCREVGITLFTVSHRKSL 293 (298)
Q Consensus 241 QRlaiARaL~--~~P~iliLDEPTs~L--D~~~-~---~~i~~~l~~~~~TiIiitH~l~~ 293 (298)
+....++.++ .+|+++++|++++.+ |+.. . ..+.+.+++.|+|+|+++|....
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3334444444 579999999999987 4421 2 23444556679999999997653
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.31 E-value=0.00086 Score=65.00 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=45.2
Q ss_pred CCCCChhHHHHHHHHH--HHhc---------------CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400 232 IDVLSGGEKQRVAMAR--LFYH---------------RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 232 ~~~LSgGqkQRlaiAR--aL~~---------------~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~ 290 (298)
...+||||+|-.-+|. |+++ .=.+++|||+ +-+|.+.....++++++.|.=+|++|=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 4578999999543333 2222 1258999999 9999999999999999999988888744
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.28 E-value=0.0079 Score=58.23 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=36.8
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT 162 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~ 162 (298)
+++++||+|++ ++++|+ ||| || |+++ + +|+.+|++|+|.
T Consensus 19 ~l~~vsl~i~~-e~~~li--------G~nGsGKSTLl~~-------l----~Gl~~p~~G~I~ 61 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLS--------GGNGAGKSTTMAG-------F----VTALIPDLTLLN 61 (483)
T ss_dssp TEEEEEEECCS-SEEEEE--------CCTTSSHHHHHHH-------H----HHHHCCCTTTCC
T ss_pred cccceEEEEcc-ceEEEE--------CCCCCcHHHHHHH-------H----hcCCCCCCCEEE
Confidence 89999999999 999999 999 99 9999 8 999999999874
No 158
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.18 E-value=0.0065 Score=56.16 Aligned_cols=55 Identities=5% Similarity=0.047 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-CcEEEEEec
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-GITLFTVSH 289 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-~~TiIiitH 289 (298)
.||.+++||++.|...+.+++++|.|+|...++ +....+.++.++. +..+|+|-|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-HHHHHHHHHHHhcCCCCEEEEec
Confidence 699999999999999999999999999875543 2233344444455 788888865
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.74 E-value=0.0002 Score=60.33 Aligned_cols=115 Identities=14% Similarity=0.013 Sum_probs=58.8
Q ss_pred eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC--Cce-eecc----CCCcEEEEcCcCC
Q psy11400 109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF--GGT-VTKP----PRGKLFYVPQRPY 177 (298)
Q Consensus 109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~--~G~-i~~~----~r~~i~~v~Q~~~ 177 (298)
|+++++|++++|+ ||| || |+++ + .++++.. .|. +... .+..++|+||++.
T Consensus 1 s~~m~~g~ii~l~--------Gp~GsGKSTl~~~-------L----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (205)
T 3tr0_A 1 SNAMNKANLFIIS--------APSGAGKTSLVRA-------L----VKALAEIKISISHTTRPKRPGDQEGVDYFFIDET 61 (205)
T ss_dssp ----CCCCEEEEE--------CCTTSCHHHHHHH-------H----HHHSSSEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCcCCCCcEEEEE--------CcCCCCHHHHHHH-------H----HhhCCCeEEeceeccCCCchhHhcCceEEeccHH
Confidence 5778899999999 999 99 8888 6 6654311 111 1111 2345889999886
Q ss_pred CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400 178 MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256 (298)
Q Consensus 178 l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il 256 (298)
.+. .++.+++.+....... ......+.+.+.++.- .. .+-.+..|-+..++....+|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~g-~~-----------------vi~d~~~~~~~~~~~~~~~~~~v 122 (205)
T 3tr0_A 62 RFQAMVKEGAFLEHATIYER-HYGTEKDWVLRQLKAG-RD-----------------VLLEIDWQGARQIRELFPPALSI 122 (205)
T ss_dssp HHHHHHHHTCEEEEEEETTE-EEEEEHHHHHHHHHTT-CE-----------------EEEECCHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHhcCcEEeeeeeecc-cccchHHHHHHHHHcC-Ce-----------------EEEEECHHHHHHHHHhCCCcEEE
Confidence 543 2444444322111100 0122334455554431 11 11112334444555666677778
Q ss_pred EEecc
Q psy11400 257 ILDEC 261 (298)
Q Consensus 257 iLDEP 261 (298)
+++.|
T Consensus 123 ~~~~~ 127 (205)
T 3tr0_A 123 FILPP 127 (205)
T ss_dssp EEECS
T ss_pred EEECc
Confidence 87776
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.66 E-value=2e-06 Score=76.98 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTS 263 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs 263 (298)
..|||||+||+.+++|+..+|++ ||++.-
T Consensus 168 ~~lsgg~~~~~~i~~a~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 168 VEMDGFEKDTAIVVMAATNRPDI--LDPALL 196 (278)
T ss_dssp HHHTTCCTTCCEEEEEEESCTTS--SCHHHH
T ss_pred HHHhCCCCCCCEEEEEecCCchh--CCHhHc
Confidence 36899999999999999999987 787754
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.18 E-value=2.5e-05 Score=69.75 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=49.3
Q ss_pred cccccc-cCCCCChhHHHHHHHHHHHhcCCCE--EEEeccccCCCHHHH---------HHHHHHHHh--cCcEEEEEecC
Q psy11400 225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQF--AILDECTSAVSVDVE---------GSMYEYCRE--VGITLFTVSHR 290 (298)
Q Consensus 225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~i--liLDEPTs~LD~~~~---------~~i~~~l~~--~~~TiIiitH~ 290 (298)
++.... +...+|+| ||++++++++.+|++ +|+||+|+++|...+ ....+.++. .|.|.+.++||
T Consensus 162 l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r 239 (261)
T 2eyu_A 162 LQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAME 239 (261)
T ss_dssp EEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHH
T ss_pred hhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 444443 44568899 999999999999999 999999999997632 122333222 48899999998
Q ss_pred cch
Q psy11400 291 KSL 293 (298)
Q Consensus 291 l~~ 293 (298)
++.
T Consensus 240 ~~~ 242 (261)
T 2eyu_A 240 ASP 242 (261)
T ss_dssp HCS
T ss_pred HhC
Confidence 763
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.05 E-value=0.00075 Score=59.80 Aligned_cols=44 Identities=9% Similarity=-0.078 Sum_probs=26.3
Q ss_pred CcEEEeee-eEecCCCCCCCCCCcccceeeeeEEEeC---CcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 79 NLRGRLGI-TLGLRSGGLGFDSRWGRSFFDYMFGVRG---ALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 79 ~~i~~~~v-~~~~~~~~~~~~~~~~~~l~~isl~i~~---g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
..++++|+ ++.|..+.. +|+|+||+|++ |++++|+ |++ || +.++
T Consensus 16 ~~l~~~~~~~~~~~~~~~--------~l~~~~~~i~~~l~g~~i~l~--------G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ--------ILKKKAEEVKPYLNGRSMYLV--------GMMGSGKTTVGKI 67 (250)
T ss_dssp ----------------CH--------HHHHHHHTTHHHHTTCCEEEE--------CSTTSCHHHHHHH
T ss_pred CceEEcceeeEEecCcch--------hhhhhhhhhhhhcCCCEEEEE--------CCCCCCHHHHHHH
Confidence 36899999 999933333 99999999999 9999999 999 99 7776
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.97 E-value=0.005 Score=52.99 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=18.3
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
..+++||++++|++++|+ ||| || |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~--------Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLS--------SPSGCGKTTVANK 46 (231)
T ss_dssp ------CCEECCCEEEEE--------CSCC----CHHHH
T ss_pred ccCCCCcccCCCCEEEEE--------CCCCCCHHHHHHH
Confidence 578899999999999999 999 99 8888
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.83 E-value=0.055 Score=50.00 Aligned_cols=52 Identities=12% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcC--CCEEEEeccccCC----------CH----H---HHHHHHHH---HHhcCcEEEEEecCcc
Q psy11400 241 QRVAMARLFYHR--PQFAILDECTSAV----------SV----D---VEGSMYEY---CREVGITLFTVSHRKS 292 (298)
Q Consensus 241 QRlaiARaL~~~--P~iliLDEPTs~L----------D~----~---~~~~i~~~---l~~~~~TiIiitH~l~ 292 (298)
|-+.++++++.+ |+++|+||+++.+ |. . ..+.+.++ +++.++|+|+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 456788888765 9999999999998 32 1 11222232 3567999999999653
No 165
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.72 E-value=0.014 Score=59.80 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=46.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEecccc-CCCHHHHHHHHHHHHh---cCcEEEE-EecCcchh
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTS-AVSVDVEGSMYEYCRE---VGITLFT-VSHRKSLW 294 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs-~LD~~~~~~i~~~l~~---~~~TiIi-itH~l~~~ 294 (298)
...+|+|+.+|..++++++.+++++|+|||.. +||......+++.+.. ...++++ .||+.+.+
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l 255 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF 255 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence 34689999999999999999999999999997 8987655444443332 1355665 48876543
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.70 E-value=0.0023 Score=59.70 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=16.9
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
-+++|+++.|. ||+ || |+..
T Consensus 57 Gi~~G~i~~I~--------GppGsGKSTLal~ 80 (356)
T 3hr8_A 57 GYPRGRIVEIF--------GQESSGKTTLALH 80 (356)
T ss_dssp SEETTEEEEEE--------ESTTSSHHHHHHH
T ss_pred CccCCcEEEEE--------CCCCCCHHHHHHH
Confidence 47899999999 999 99 5544
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.67 E-value=0.046 Score=52.78 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEecccc----------CCCHHHHHHHHHHHH-------hcCcEEEEEecCcchh
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTS----------AVSVDVEGSMYEYCR-------EVGITLFTVSHRKSLW 294 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs----------~LD~~~~~~i~~~l~-------~~~~TiIiitH~l~~~ 294 (298)
+++++|-.+++|....|.+|++||+.+ +.|...+..+.+++. ..+..||.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 678899999999999999999999954 455544444444443 1367899999998643
No 168
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.18 E-value=0.018 Score=53.21 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHHHHH---hc--CCCEEEEeccc
Q psy11400 233 DVLSGGEKQRVAMARLF---YH--RPQFAILDECT 262 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL---~~--~P~iliLDEPT 262 (298)
.++|+||+||.+++|+| +. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 46999999999999999 77 89999999997
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.14 E-value=6.5e-05 Score=70.47 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=49.2
Q ss_pred Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCE--EEEeccccCCCHH----H-----HHHHHHHHHh--cCcEEEEEec
Q psy11400 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQF--AILDECTSAVSVD----V-----EGSMYEYCRE--VGITLFTVSH 289 (298)
Q Consensus 224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~i--liLDEPTs~LD~~----~-----~~~i~~~l~~--~~~TiIiitH 289 (298)
+++.++. ....+|+| ||+++|++++.+|++ +|+||+|++||.. . +....+.+.. .|.|.+.++|
T Consensus 272 ~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~ 349 (372)
T 2ewv_A 272 ILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAM 349 (372)
T ss_dssp SCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTT
T ss_pred hhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHH
Confidence 3444433 33456889 899999999999999 9999999999864 2 1123333332 4899999999
Q ss_pred Ccch
Q psy11400 290 RKSL 293 (298)
Q Consensus 290 ~l~~ 293 (298)
|++.
T Consensus 350 r~~~ 353 (372)
T 2ewv_A 350 EASP 353 (372)
T ss_dssp SSCS
T ss_pred HHcC
Confidence 9863
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.13 E-value=0.0058 Score=61.47 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=33.6
Q ss_pred hcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 250 YHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 250 ~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
..++.++++| |+.++++.++..+ +.+++.+.++|++.|.++..
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~~~~-~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTERAW-TVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHHHHH-HHHHHTTCCEEEEEECGGGC
T ss_pred hcCcEEEEEc-CCcccchhHHHHH-HHHHHccCCEEEEecCCchh
Confidence 4677888899 9999999888544 44455688999999998864
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.36 E-value=0.6 Score=42.32 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=33.3
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHh------cCcEEEEEecCcch
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCRE------VGITLFTVSHRKSL 293 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~------~~~TiIiitH~l~~ 293 (298)
.+|.++++||+... |......+.+.+.+ .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999886 88888878777642 37889999998853
No 172
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.26 E-value=0.01 Score=56.02 Aligned_cols=44 Identities=20% Similarity=0.018 Sum_probs=38.9
Q ss_pred CcEEEeeeeEecCCCCCCCCCCccccee--------------eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 79 NLRGRLGITLGLRSGGLGFDSRWGRSFF--------------DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~--------------~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+.+.|+||++.||..+. .++ |+++.+.+|+.++|+ |++ || |++.
T Consensus 132 ~ri~Fe~ltp~yP~er~--------~Le~~~~~~~~tGiraID~~~pi~rGQr~~Iv--------G~sG~GKTtLl~~ 193 (422)
T 3ice_A 132 NKILFENLTPLHANSRL--------RMERGNGSTEDLTARVLDLASPIGRGQRGLIV--------APPKAGKTMLLQN 193 (422)
T ss_dssp TSCCTTTSCEESCCSBC--------CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEE--------CCSSSSHHHHHHH
T ss_pred CCceeccccccCCCCcc--------ccccCCCCcccccceeeeeeeeecCCcEEEEe--------cCCCCChhHHHHH
Confidence 46889999999997665 788 899999999999999 999 99 7766
No 173
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.10 E-value=0.00097 Score=62.98 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=31.3
Q ss_pred CC--CEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcch
Q psy11400 252 RP--QFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSL 293 (298)
Q Consensus 252 ~P--~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~ 293 (298)
+| ++.++|||++.+|+...+..++.+++. |.|++ +|.+..
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~ 184 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKE 184 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHH
Confidence 89 999999999999999888777766543 55643 887654
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.74 E-value=0.32 Score=44.61 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHH--HHHHHHHhcC-cEEEEEec
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREVG-ITLFTVSH 289 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~--~i~~~l~~~~-~TiIiitH 289 (298)
+.++.++|+..+++..+.+|+.+||.-..+..|..... .+.+.+...+ .++++++.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeC
Confidence 36788999999999999999988887433334433222 2233333334 46666654
No 175
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.26 E-value=0.51 Score=43.09 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=33.1
Q ss_pred HHHHHHHHHh----cCCCEEEEeccccCCCHH-------H-----HHH----HHHHHHhcCcEEEEEecCcc
Q psy11400 241 QRVAMARLFY----HRPQFAILDECTSAVSVD-------V-----EGS----MYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 241 QRlaiARaL~----~~P~iliLDEPTs~LD~~-------~-----~~~----i~~~l~~~~~TiIiitH~l~ 292 (298)
+.+..++.++ .+++++|+|+.++-.... . ... +..+.++.+++||+++|-..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 4555566666 679999999999866332 1 112 22334456999999998543
No 176
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.00 E-value=0.43 Score=43.13 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=34.6
Q ss_pred HHHHHHHHHHh---cCCCEEEEeccccCCCHH--------H----HHH----HHHHHHhcCcEEEEEecCc
Q psy11400 240 KQRVAMARLFY---HRPQFAILDECTSAVSVD--------V----EGS----MYEYCREVGITLFTVSHRK 291 (298)
Q Consensus 240 kQRlaiARaL~---~~P~iliLDEPTs~LD~~--------~----~~~----i~~~l~~~~~TiIiitH~l 291 (298)
.+.+..++.++ .+|+++|+|+.++-.... . ... +..+.++.+++||++.|-.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 35677778887 679999999999865321 1 112 2233345699999998854
No 177
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.73 E-value=0.0053 Score=53.51 Aligned_cols=47 Identities=11% Similarity=-0.046 Sum_probs=35.7
Q ss_pred eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-------------------cC
Q psy11400 109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-------------------PP 165 (298)
Q Consensus 109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-------------------~~ 165 (298)
+|++.+ ++++|+ ||| || |+++ + +|+.+|++|.|.. ..
T Consensus 22 ~~~~~~-~~~~i~--------GpnGsGKSTll~~-------i----~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 81 (227)
T 1qhl_A 22 TFDLDE-LVTTLS--------GGNGAGKSTTMAA-------F----VTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81 (227)
T ss_dssp EECHHH-HHHHHH--------SCCSHHHHHHHHH-------H----HHHHSCCTTTC------------------CGGGB
T ss_pred EEEEcC-cEEEEE--------CCCCCCHHHHHHH-------H----hcccccCCCeEEECCEEcccCCccccccchhhHh
Confidence 455566 899999 999 99 9999 8 8888888887531 01
Q ss_pred CCcEEEEcCc
Q psy11400 166 RGKLFYVPQR 175 (298)
Q Consensus 166 r~~i~~v~Q~ 175 (298)
+..++|++|+
T Consensus 82 ~~~i~~v~~~ 91 (227)
T 1qhl_A 82 KAGVCYSMLD 91 (227)
T ss_dssp CSSEEEEEEE
T ss_pred hcCcEEEEEe
Confidence 4579999985
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.69 E-value=0.24 Score=45.47 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=46.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEe-ccccCCCHHHHHHHHHHHHh-c-CcEEEEEe--cCcc
Q psy11400 232 IDVLSGGEKQRVAMARLFYHRPQFAILD-ECTSAVSVDVEGSMYEYCRE-V-GITLFTVS--HRKS 292 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~P~iliLD-EPTs~LD~~~~~~i~~~l~~-~-~~TiIiit--H~l~ 292 (298)
...+|+|++|++. +.+...++-++++| ++++++|......+.+.+.+ . ++.+|+|. ||+.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 4578999999876 55556777789999 99999998877766665554 2 78888888 7764
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.96 E-value=0.06 Score=43.98 Aligned_cols=24 Identities=8% Similarity=-0.123 Sum_probs=21.6
Q ss_pred eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
++++|.+.+| +++|+ |+| || |+++
T Consensus 18 ~~~~~~~~~g-~~~i~--------G~NGsGKStll~a 45 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIV--------GANGSGKSNIGDA 45 (182)
T ss_dssp SCEEEECCSS-EEEEE--------ECTTSSHHHHHHH
T ss_pred ccEEEecCCC-cEEEE--------CCCCCCHHHHHHH
Confidence 6788999999 99999 999 99 7777
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.83 E-value=0.034 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.9
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+++++|++++|+ |+| || +.++
T Consensus 1 m~i~~g~~i~l~--------G~~GsGKSTl~~~ 25 (207)
T 2j41_A 1 MDNEKGLLIVLS--------GPSGVGKGTVRKR 25 (207)
T ss_dssp ---CCCCEEEEE--------CSTTSCHHHHHHH
T ss_pred CCCCCCCEEEEE--------CCCCCCHHHHHHH
Confidence 467899999999 999 99 8887
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.10 E-value=0.17 Score=41.60 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
+.+.+|++++.+|+++++| ||++|......+++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4478899999999999999 999999988888887654
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.10 E-value=0.18 Score=41.97 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=15.5
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+++|+||++++|++++|+ |++ || +.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~--------G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLT--------GYMGAGKTTLGKA 44 (199)
T ss_dssp ----------CCCEEEEE--------CCTTSCHHHHHHH
T ss_pred CCCceeEecCCCCEEEEE--------cCCCCCHHHHHHH
Confidence 899999999999999999 999 99 7666
No 183
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.10 E-value=0.01 Score=54.45 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=66.9
Q ss_pred ceeeeeEEEeCCc------EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEc
Q psy11400 104 SFFDYMFGVRGAL------NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVP 173 (298)
Q Consensus 104 ~l~~isl~i~~g~------~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~ 173 (298)
.+++++..+.+++ +++|+ ||| || ++++ + .++..... ....+++++
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~--------GpsGSGKSTl~~~-------L----~~ll~~~~------~~~~v~~i~ 129 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIA--------GSVAVGKSTTSRV-------L----KALLSRWP------DHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEE--------CCTTSSHHHHHHH-------H----HHHHTTST------TCCCEEEEE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEE--------CCCCCCHHHHHHH-------H----HHHhcccC------CCCeEEEEe
Confidence 6777777777776 89999 999 99 8888 6 66654210 123478899
Q ss_pred CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400 174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252 (298)
Q Consensus 174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~ 252 (298)
++.+.......+....... .+. ....+.+.+.+.++.+.-.. -+..| .+|.+..+|+..+...+..
T Consensus 130 ~D~f~~~~~~l~~~~~~~~-~g~-P~~~D~~~l~~~L~~L~~g~~~v~~P-----------~yd~~~~~r~~~~~~~v~~ 196 (321)
T 3tqc_A 130 TDGFLYSNAKLEKQGLMKR-KGF-PESYDMPSLLRVLNAIKSGQRNVRIP-----------VYSHHYYDIVRGQYEIVDQ 196 (321)
T ss_dssp GGGGBCCHHHHHHTTCGGG-TTS-GGGBCHHHHHHHHHHHHTTCSSEEEE-----------EEETTTTEEEEEEEEEECS
T ss_pred ecccccchhhhhhHHHHhh-ccC-cccccHHHHHHHHHhhhccccccccc-----------hhhhhccccccCceeeccC
Confidence 9886544332222110000 000 01223444555554432211 11111 2333333443323345678
Q ss_pred CCEEEEeccccCCCH
Q psy11400 253 PQFAILDECTSAVSV 267 (298)
Q Consensus 253 P~iliLDEPTs~LD~ 267 (298)
|+++|++.+..-.|.
T Consensus 197 ~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 197 PDIVILEGLNILQTG 211 (321)
T ss_dssp CSEEEEECTTTTCCC
T ss_pred CCEEEEEcccccccc
Confidence 999999987765543
No 184
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=86.92 E-value=0.37 Score=44.61 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=32.4
Q ss_pred cCCCCChhHHHHHHHH----HHH-hcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 231 WIDVLSGGEKQRVAMA----RLF-YHRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 231 ~~~~LSgGqkQRlaiA----RaL-~~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
+...+|+|++|++.++ +++ ..+|++ +|+|++|......+.+.+.+
T Consensus 301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 301 KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 4556888899988877 665 444454 89999998777777665543
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.98 E-value=2.5 Score=36.90 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccccCCCH----------HHHHHHHHHHHhc-------CcEEEEEecCcc
Q psy11400 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSV----------DVEGSMYEYCREV-------GITLFTVSHRKS 292 (298)
Q Consensus 236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD~----------~~~~~i~~~l~~~-------~~TiIiitH~l~ 292 (298)
+++++.|..++++...+|.++++||+.+-++. .....+...+... +..+|.+|+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999887643 2223344444331 345777888764
No 186
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.31 E-value=0.79 Score=41.27 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=40.2
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcE--EEEEec
Q psy11400 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGIT--LFTVSH 289 (298)
Q Consensus 235 LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~T--iIiitH 289 (298)
||.+++||+..|...+.++++++.|+|...++. ....+.++.++.+.. +|+|-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~-i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNY-IWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH-HHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999998744322 233344444455777 888866
No 187
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=81.18 E-value=0.71 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH
Q psy11400 243 VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277 (298)
Q Consensus 243 laiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l 277 (298)
...|++++.+|++.++| |||+|......+++.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNI 162 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHH
Confidence 45689999999999999 9999987666666544
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.84 E-value=2.3 Score=40.13 Aligned_cols=41 Identities=12% Similarity=0.328 Sum_probs=31.0
Q ss_pred cCCCEEEEeccccCCCH-HHHHHHHHHHH---hcCcEEEEEecCc
Q psy11400 251 HRPQFAILDECTSAVSV-DVEGSMYEYCR---EVGITLFTVSHRK 291 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~-~~~~~i~~~l~---~~~~TiIiitH~l 291 (298)
.+|++|++||+..-.+. .....++..+. +.++.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887763 45556666553 4578999999984
No 189
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.04 E-value=1.6 Score=41.36 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH 289 (298)
.-+.+...+++++...+-++++| ++++.|... .+..+....+.+-|++|+
T Consensus 197 ~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~--~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 197 PLMGELARLKEVLGPDEVLLVLD-AMTGQEALS--VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHH--HHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHHhhhccCCceEEEEEe-ccchHHHHH--HHHHHHhcCCceEEEEeC
Confidence 34667777888886666678888 556655432 222332334667777775
No 190
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=79.24 E-value=1.6 Score=36.87 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=36.2
Q ss_pred HHHHHHHHHHh--cCCCEEEEeccccCC--CHHHHHHHHHHHHhc--CcEEEEEecCc
Q psy11400 240 KQRVAMARLFY--HRPQFAILDECTSAV--SVDVEGSMYEYCREV--GITLFTVSHRK 291 (298)
Q Consensus 240 kQRlaiARaL~--~~P~iliLDEPTs~L--D~~~~~~i~~~l~~~--~~TiIiitH~l 291 (298)
+..+..|+..+ .+.+++||||.+.++ +......+.+++.+. +..+|++++..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 45566677777 567999999998853 334455677877753 66777777665
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.67 E-value=0.19 Score=43.75 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=26.3
Q ss_pred eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc---cccccCCceee
Q psy11400 113 RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD---QLWPLFGGTVT 162 (298)
Q Consensus 113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~---~l~~~~~G~i~ 162 (298)
++|++++|+ ||| || +.++ + + |++.+++|.+.
T Consensus 25 ~~g~~I~I~--------G~~GsGKSTl~k~-------L----a~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVD--------GPSGAGKGTLCKA-------L----AESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEE--------CCTTSSHHHHHHH-------H----HHHTTCEEEEHHHHH
T ss_pred CCCcEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCcCCCCcee
Confidence 789999999 999 99 8888 6 6 77778878764
No 192
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.17 E-value=0.28 Score=44.61 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.9
Q ss_pred eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
+++++|++++|++++++ |++ || ++.. + ++.+.+.+|++
T Consensus 95 ~~~l~~~~~~~~vI~iv--------G~~G~GKTT~~~~-------L----A~~l~~~g~kV 136 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLV--------GVNGTGKTTSLAK-------M----ANYYAELGYKV 136 (320)
T ss_dssp -CCCCCCTTSCEEEEEE--------SSTTSSHHHHHHH-------H----HHHHHHTTCCE
T ss_pred ccCccccCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHHHCCCeE
Confidence 47899999999999999 999 99 6655 5 77777777765
No 193
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=78.10 E-value=3.9 Score=38.74 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=13.7
Q ss_pred CCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 114 GALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 114 ~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
++.+++++ |++ || ++..
T Consensus 96 ~~~vI~lv--------G~~GsGKTTt~~k 116 (433)
T 3kl4_A 96 LPFIIMLV--------GVQGSGKTTTAGK 116 (433)
T ss_dssp SSEEEEEC--------CCTTSCHHHHHHH
T ss_pred CCeEEEEE--------CCCCCCHHHHHHH
Confidence 57899999 999 99 5444
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.08 E-value=6.9 Score=35.86 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHHh--cCCCEEEEeccccCCCH-H-----------HH-----HHH---HHHHHhcCcEEEEEecCc
Q psy11400 241 QRVAMARLFY--HRPQFAILDECTSAVSV-D-----------VE-----GSM---YEYCREVGITLFTVSHRK 291 (298)
Q Consensus 241 QRlaiARaL~--~~P~iliLDEPTs~LD~-~-----------~~-----~~i---~~~l~~~~~TiIiitH~l 291 (298)
|-+.+++.+. .+|+++|+|.+++-... + .+ +.+ ..++++.+++||+++|-.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 4456667664 67999999999987631 1 11 112 223455799999999854
No 195
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.64 E-value=2.8 Score=37.53 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=29.2
Q ss_pred CCCEEEEeccccCCC---HHHHHHHHHHHH---hcCcEEEEEecCcchh
Q psy11400 252 RPQFAILDECTSAVS---VDVEGSMYEYCR---EVGITLFTVSHRKSLW 294 (298)
Q Consensus 252 ~P~iliLDEPTs~LD---~~~~~~i~~~l~---~~~~TiIiitH~l~~~ 294 (298)
.|.++++||+....+ ......+.+.+. ..+.++|++||+.+..
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 388999999988662 344445555553 2367899999988643
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=73.34 E-value=0.7 Score=38.34 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=30.7
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCC
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLG 181 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~ 181 (298)
++++|++++|+ |++ || +.+. | .+.++ .+.+++|+++++.+
T Consensus 17 ~~~~~~~i~i~--------G~~GsGKSTl~~~-------L----~~~~~------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGIS--------GVTNSGKTTLAKN-------L----QKHLP------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEE--------ESTTSSHHHHHHH-------H----HTTST------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHhcC------------CcEEEeCCccccCH
Confidence 45788999999 999 99 8777 6 44431 47899999877654
No 197
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.12 E-value=0.66 Score=38.02 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.8
Q ss_pred CcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400 115 ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL 156 (298)
Q Consensus 115 g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~ 156 (298)
|++++|+ ||| || |+++ + .+++++
T Consensus 1 ~~ii~l~--------GpsGaGKsTl~~~-------L----~~~~~~ 27 (186)
T 3a00_A 1 SRPIVIS--------GPSGTGKSTLLKK-------L----FAEYPD 27 (186)
T ss_dssp CCCEEEE--------SSSSSSHHHHHHH-------H----HHHCGG
T ss_pred CCEEEEE--------CCCCCCHHHHHHH-------H----HhhCCc
Confidence 5789999 999 99 8888 7 677663
No 198
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=70.31 E-value=0.92 Score=41.93 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=23.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.+++++|++++| +++|+ ||| || ++.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~--------G~nG~GKttll~a 45 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIY--------GENGAGKTNLLEA 45 (359)
T ss_dssp TCCSEEEECCSE-EEEEE--------CCTTSSHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEE--------CCCCCChhHHHHH
Confidence 678999999999 99999 999 99 7776
No 199
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.71 E-value=0.26 Score=41.00 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=30.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
+.+..++..++|++++|+ |+| || +.+. + ++.+. ..|.+
T Consensus 14 ~~~~~~~~~~~g~~i~l~--------G~sGsGKSTl~~~-------L----a~~l~-~~G~~ 55 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVT--------GLSGSGKSTLACA-------L----NQMLY-QKGKL 55 (200)
T ss_dssp HHHHHHHHTSCCEEEEEE--------CSTTSSHHHHHHH-------H----HHHHH-HTTCC
T ss_pred HHHHHHhcCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHH-hcCce
Confidence 567788888999999999 999 99 8888 6 66654 44543
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=69.29 E-value=0.36 Score=45.00 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=73.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-c-C-CC---cEEEEc
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-P-P-RG---KLFYVP 173 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-~-~-r~---~i~~v~ 173 (298)
+++++++.+++|+.++|+ ||+ || |+++ + ++. .+|.+.. . . .+ .++++|
T Consensus 158 ~l~~~~~~i~~~~~i~l~--------G~~GsGKSTl~~~-------l----~~~---~~g~~~~~~~~~~~~~~~lg~~~ 215 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFK--------GPIDSGKTTLAAA-------L----LEL---CGGKALNVNLPLDRLNFELGVAI 215 (377)
T ss_dssp HHHHHHHCCTTCCEEEEE--------CSTTSSHHHHHHH-------H----HHH---HCCEEECCSSCTTTHHHHHGGGT
T ss_pred HHHhcccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhh---cCCcEEEEeccchhHHHHHHHhc
Confidence 899999999999999999 999 99 8887 6 443 3555432 1 1 11 366777
Q ss_pred CcCCCCCCCHHHHHccCCcchhhhhcCC---CHHHHHHHHHH---cCCchhhhhcCCcc------cccccCCCCChhHHH
Q psy11400 174 QRPYMTLGTLRDQVIYPHTKEDMIQKGI---TDADLTEYLQK---VQLGYILNREKGWD------TVADWIDVLSGGEKQ 241 (298)
Q Consensus 174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~---~~~~i~~~l~~---~~l~~~~~~~~g~d------~~~~~~~~LSgGqkQ 241 (298)
|...++ .|++.............. ....+...+.- +.+. .+++.-++ ........+++|++|
T Consensus 216 q~~~~l----~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~--tn~~~~l~alf~pg~ld~~~~~l~~~~~~ 289 (377)
T 1svm_A 216 DQFLVV----FEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE--KKHLNKRTQIFPPGIVTMNEYSVPKTLQA 289 (377)
T ss_dssp TCSCEE----ETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC--CSSSCCEEECCCCEEEEECSCCCCHHHHT
T ss_pred chhHHH----HHHHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec--cCchhhHHHhhcCcccChhHHhhcHHHHH
Confidence 765321 122222111000000000 00112222220 0000 00110001 112244578999999
Q ss_pred HHHHHHHHhcCCCEEE-Eecccc
Q psy11400 242 RVAMARLFYHRPQFAI-LDECTS 263 (298)
Q Consensus 242 RlaiARaL~~~P~ili-LDEPTs 263 (298)
|++.+.+++.+|++++ ||+|+.
T Consensus 290 rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 290 RFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHhhhhccCCCCCeEEEEeCCHH
Confidence 9999888899999888 998887
No 201
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.00 E-value=0.85 Score=37.20 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=16.1
Q ss_pred eCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 113 RGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.+|++++|+ ||| || |+++
T Consensus 3 ~~g~~i~i~--------GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 3 HMRKTLVLL--------GAHGVGRRHIKNT 24 (180)
T ss_dssp CCCCEEEEE--------CCTTSSHHHHHHH
T ss_pred CCCCEEEEE--------CCCCCCHHHHHHH
Confidence 378999999 999 99 8888
No 202
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=67.42 E-value=7.7 Score=31.58 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=31.9
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS 292 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~ 292 (298)
.+|.++++||+-. +|......+.+.+.+ .+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4678999999876 788888888888875 3567888887754
No 203
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=64.07 E-value=3.2 Score=36.89 Aligned_cols=50 Identities=4% Similarity=0.038 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHHHh--cCCCEEEEeccccCCCHHH-HHHHHHH---HHh-cCc--EEEEEecCc
Q psy11400 235 LSGGEKQRVAMARLFY--HRPQFAILDECTSAVSVDV-EGSMYEY---CRE-VGI--TLFTVSHRK 291 (298)
Q Consensus 235 LSgGqkQRlaiARaL~--~~P~iliLDEPTs~LD~~~-~~~i~~~---l~~-~~~--TiIiitH~l 291 (298)
+|+|++ .+++++. ..|.++++ +.+|... ...+.+. +.+ .+. .+.+++|.-
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 898886 5566666 78999998 6777543 2333332 222 343 555666654
No 204
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=62.64 E-value=10 Score=32.41 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=29.4
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL 293 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~ 293 (298)
+|+++++||.-- |+.+..+.+..+ .+.+.+||++.|+.+.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~L-~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANIL-AENGFVVIISGLDKNF 128 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHHH-HHTTCEEEEECCSBCT
T ss_pred CCCEEEEecCcc-CcHHHHHHHHHH-HhCCCeEEEEeccccc
Confidence 589999999975 766544444443 3459999999997654
No 205
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=61.31 E-value=0.17 Score=48.97 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=34.1
Q ss_pred HHHhcCCCEEEEeccccCCCHHHHHHHH-HHHHhcCcEEEEEecCcchh
Q psy11400 247 RLFYHRPQFAILDECTSAVSVDVEGSMY-EYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 247 RaL~~~P~iliLDEPTs~LD~~~~~~i~-~~l~~~~~TiIiitH~l~~~ 294 (298)
|||..+ ++||+ ||+|++||. ...+. ++.++.++++.+++|.+..+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eLt~~~~~~iP~vsa~md~~ 73 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSALTRKITLKTPLISSPMDTV 73 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCEESSSSCEESSCEEECCCTTT
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEeeccCCeeEeceEEEEehhhh
Confidence 789999 99999 999999994 33332 23344578889999988765
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=58.37 E-value=2.1 Score=36.06 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=16.7
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+...+|+.++|+ ||| || |++.
T Consensus 14 ~~~~~g~~ivl~--------GPSGaGKsTL~~~ 38 (197)
T 3ney_A 14 LYFQGRKTLVLI--------GASGVGRSHIKNA 38 (197)
T ss_dssp --CCSCCEEEEE--------CCTTSSHHHHHHH
T ss_pred CCCCCCCEEEEE--------CcCCCCHHHHHHH
Confidence 334589999999 999 99 7777
No 207
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=55.30 E-value=1.8 Score=35.87 Aligned_cols=32 Identities=31% Similarity=0.144 Sum_probs=25.6
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
..++|++++|+ |+| || +++. + .+.+++.+|.+
T Consensus 18 ~~~~~~~i~i~--------G~~GsGKstl~~~-------l----~~~~~~~~~~v 53 (201)
T 1rz3_A 18 KTAGRLVLGID--------GLSRSGKTTLANQ-------L----SQTLREQGISV 53 (201)
T ss_dssp CCSSSEEEEEE--------ECTTSSHHHHHHH-------H----HHHHHHTTCCE
T ss_pred ccCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHhhcCCeE
Confidence 35788999999 999 99 8888 7 77776666654
No 208
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=55.18 E-value=2.6 Score=35.10 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=16.3
Q ss_pred eCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 113 RGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
++|+.++|+ ||| || |++.
T Consensus 6 ~~g~~i~l~--------GpsGsGKsTl~~~ 27 (208)
T 3tau_A 6 ERGLLIVLS--------GPSGVGKGTVREA 27 (208)
T ss_dssp CCCCEEEEE--------CCTTSCHHHHHHH
T ss_pred CCCcEEEEE--------CcCCCCHHHHHHH
Confidence 589999999 999 99 8777
No 209
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=54.07 E-value=0.91 Score=41.34 Aligned_cols=39 Identities=21% Similarity=0.024 Sum_probs=31.2
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV 161 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i 161 (298)
+++++++.+.+|.+++++ |++ || +++. + ++.+.+.++++
T Consensus 45 ~~~~l~~~~~~~~~i~i~--------G~~g~GKSTl~~~-------l----~~~~~~~~~~v 87 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVT--------GTPGAGKSTFLEA-------F----GMLLIREGLKV 87 (341)
T ss_dssp HHHHHGGGCSCSEEEEEE--------ECTTSCHHHHHHH-------H----HHHHHHTTCCE
T ss_pred HHHhCCcccCCCEEEEEE--------cCCCCCHHHHHHH-------H----HHHHHhcCCeE
Confidence 788999999999999999 999 99 7777 6 66655555543
No 210
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=53.92 E-value=9.8 Score=37.42 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHH--HHHHHHHhc-CcEEEEEec
Q psy11400 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREV-GITLFTVSH 289 (298)
Q Consensus 237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~--~i~~~l~~~-~~TiIiitH 289 (298)
.+++|...+++.++.+|.-++++.+|+.+|..... .+.+.+... ..||+++||
T Consensus 168 ~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 168 DIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 44668889999999999999999999999976433 233333322 578888887
No 211
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=53.91 E-value=13 Score=31.81 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCEEEEeccccCC----------CHHHHHHHHHHHHh-------cCcEEEEEecCcch
Q psy11400 244 AMARLFYHRPQFAILDECTSAV----------SVDVEGSMYEYCRE-------VGITLFTVSHRKSL 293 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~L----------D~~~~~~i~~~l~~-------~~~TiIiitH~l~~ 293 (298)
.+..+...+|.++++||.-.-. +......+..++.. .+..+|.+|+++..
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 3444555688999999985432 44555556665543 14567888876654
No 212
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=53.72 E-value=21 Score=30.82 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=32.5
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
.+.+++++||.--..| ...+.+.+.+.|+.||+..++.+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGT 127 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccc
Confidence 6789999999998865 55666777778999999999954
No 213
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.56 E-value=33 Score=31.36 Aligned_cols=50 Identities=8% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHHh--cCCCEEEEeccccCCC--------------HH---HHHHHHH---HHHhcCcEEEEEecC
Q psy11400 241 QRVAMARLFY--HRPQFAILDECTSAVS--------------VD---VEGSMYE---YCREVGITLFTVSHR 290 (298)
Q Consensus 241 QRlaiARaL~--~~P~iliLDEPTs~LD--------------~~---~~~~i~~---~l~~~~~TiIiitH~ 290 (298)
|-+.+++.++ .+++++|+|..++-.. .. ..+.+.+ ++++.++++|++.|-
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 4456677776 5699999999887541 01 1111222 234568999998884
No 214
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=53.17 E-value=3.8 Score=37.62 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.6
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.++++++++++| .++|+ ||| || |+.+
T Consensus 13 ~~~~~~i~~~~g-~~~i~--------G~NGaGKTTll~a 42 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVE--------GPNGAGKSSLFEA 42 (365)
T ss_dssp TEEEEEEECCSE-EEEEE--------CCTTSSHHHHHHH
T ss_pred CccceEEecCCC-eEEEE--------CCCCCCHHHHHHH
Confidence 578899999999 78899 999 99 7766
No 215
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.85 E-value=17 Score=33.19 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=33.5
Q ss_pred cCCCEEEEeccccCCC---HHHHHHHHHHH---HhcCcEEEEEecCcchh
Q psy11400 251 HRPQFAILDECTSAVS---VDVEGSMYEYC---REVGITLFTVSHRKSLW 294 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD---~~~~~~i~~~l---~~~~~TiIiitH~l~~~ 294 (298)
.+|.++++||+-.-++ +...+.+.+.+ ++.|..++++||+++-+
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 4588999999999885 44555555544 45799999999999754
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.70 E-value=1.3 Score=37.85 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400 234 VLSGGEKQRVAMARLFYHRPQFAILDECTS 263 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs 263 (298)
.|||||+||+.+++|+..+|++ +|++.-
T Consensus 145 ~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 145 EMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred HHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 5789999999999999999987 687765
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=47.23 E-value=1.9 Score=41.91 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=23.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
++.++++++ +|+.++++ ||+ || |.+.
T Consensus 98 ~l~~~~~~~-~g~~vll~--------Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLA--------GPPGVGKTSLAKS 127 (543)
T ss_dssp HHHHHSSSC-CSCEEEEE--------SSSSSSHHHHHHH
T ss_pred HHHHhcccC-CCCEEEEE--------CCCCCCHHHHHHH
Confidence 678888888 89999999 999 99 8777
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=47.14 E-value=27 Score=32.52 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCChhHHHHHHHHHHHh--cCCCEEEEeccccCCCH------HH----HHH----HHHHHHhcCcEEEEEec
Q psy11400 234 VLSGGEKQRVAMARLFY--HRPQFAILDECTSAVSV------DV----EGS----MYEYCREVGITLFTVSH 289 (298)
Q Consensus 234 ~LSgGqkQRlaiARaL~--~~P~iliLDEPTs~LD~------~~----~~~----i~~~l~~~~~TiIiitH 289 (298)
.+|..+- .+.+|.+. ++|+++|+|..+.-... .. ... +..+.++.+++||+++|
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4566554 45566665 58999999998765432 11 112 33344557999999998
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=47.10 E-value=25 Score=30.89 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=27.2
Q ss_pred hcCCCEEEEeccccCC-CHHHHHHHHHHHH---hcCcEEEEEecCc
Q psy11400 250 YHRPQFAILDECTSAV-SVDVEGSMYEYCR---EVGITLFTVSHRK 291 (298)
Q Consensus 250 ~~~P~iliLDEPTs~L-D~~~~~~i~~~l~---~~~~TiIiitH~l 291 (298)
+.+|++|++||+..-- +......+...+. +.+..+|+++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999987632 3355556665543 3466677777643
No 220
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.48 E-value=23 Score=31.17 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=30.1
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcc
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~ 292 (298)
+++++++|| ...+++.....+.+.+.+. ...+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 6778888888888888763 345667776554
No 221
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=45.41 E-value=6.6 Score=33.07 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.6
Q ss_pred eEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+...++|++++|. |+| || ++++
T Consensus 14 ~~~~~~g~~i~i~--------G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 14 YAEGTQPFTVLIE--------GNIGSGKTTYLNH 39 (230)
T ss_dssp BTTTCCCEEEEEE--------CSTTSCHHHHHHT
T ss_pred cCCCCCceEEEEE--------CCCCCCHHHHHHH
Confidence 3345789999999 999 99 8888
No 222
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=44.31 E-value=5.2 Score=37.31 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.1
Q ss_pred EEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+++.+|++++|+ ||| || |+.+
T Consensus 21 ~~~~~~~~~~i~--------G~nG~GKstll~a 45 (430)
T 1w1w_A 21 VGFGESNFTSII--------GPNGSGKSNMMDA 45 (430)
T ss_dssp EECTTCSEEEEE--------CSTTSSHHHHHHH
T ss_pred EEecCCCEEEEE--------CCCCCCHHHHHHH
Confidence 456789999999 999 99 7777
No 223
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=44.14 E-value=4.4 Score=33.28 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=16.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+..+..++.++|++++|+ |+| || ++++
T Consensus 18 ~~~~~~m~~~~g~~i~l~--------G~~GsGKSTl~~~ 48 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVM--------GVSGSGKTTIAHG 48 (200)
T ss_dssp ----------CCCEEEEE--------CCTTSCHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEE--------CCCCCCHHHHHHH
Confidence 344445677899999999 999 99 8888
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=42.68 E-value=39 Score=28.12 Aligned_cols=40 Identities=5% Similarity=0.002 Sum_probs=27.3
Q ss_pred hcCCCEEEEeccccCCCHHHHHHHHHHHHh-----cCcEEEEEec
Q psy11400 250 YHRPQFAILDECTSAVSVDVEGSMYEYCRE-----VGITLFTVSH 289 (298)
Q Consensus 250 ~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-----~~~TiIiitH 289 (298)
+..|+.+|+..+.+.++......+..+.+. ...++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 457899999999888877655555444322 1258888888
No 225
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=40.45 E-value=30 Score=32.31 Aligned_cols=58 Identities=7% Similarity=-0.075 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEecccc-CCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 236 SGGEKQRVAMARLFYHRPQFAILDECTS-AVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 236 SgGqkQRlaiARaL~~~P~iliLDEPTs-~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
++.|.+....+...+.+++++|+..... ++... ...+.+.+++.++.+|++.+..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTTCCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHHcCCCEEEEEECccch
Confidence 3457888888999999999888765443 45444 4467778877789999998877654
No 226
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=39.62 E-value=4.1 Score=39.75 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.7
Q ss_pred EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc-ee
Q psy11400 111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG-TV 161 (298)
Q Consensus 111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G-~i 161 (298)
.+++|++++|+ |+| || |.++ | ++.+.+.+| ++
T Consensus 365 ~~~~G~iI~Li--------G~sGSGKSTLar~-------L----a~~L~~~~G~~i 401 (552)
T 3cr8_A 365 RERQGFTVFFT--------GLSGAGKSTLARA-------L----AARLMEMGGRCV 401 (552)
T ss_dssp GGGSCEEEEEE--------ESSCHHHHHHHHH-------H----HHHHHTTCSSCE
T ss_pred ccccceEEEEE--------CCCCChHHHHHHH-------H----HHhhcccCCceE
Confidence 57899999999 999 99 8888 7 777777765 44
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=38.69 E-value=12 Score=30.44 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=9.7
Q ss_pred cCCCEEEEecc
Q psy11400 251 HRPQFAILDEC 261 (298)
Q Consensus 251 ~~P~iliLDEP 261 (298)
.++++|++||+
T Consensus 114 ~~~~~lilDei 124 (202)
T 2w58_A 114 KKVPVLMLDDL 124 (202)
T ss_dssp HHSSEEEEEEE
T ss_pred cCCCEEEEcCC
Confidence 46789999999
No 228
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=38.44 E-value=46 Score=27.36 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=28.4
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
+.+++++||.-- +|++..+.+.++. ..++.||+..++.+
T Consensus 81 ~~dvViIDEaqf-l~~~~v~~l~~l~-~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEIVEIVNKIA-ESGRRVICAGLDMD 119 (191)
T ss_dssp TCSEEEECSGGG-SCTHHHHHHHHHH-HTTCEEEEEECSBC
T ss_pred cCCEEEEECCCC-CCHHHHHHHHHHH-hCCCEEEEEecccc
Confidence 579999999765 7766555444443 34899999999765
No 229
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=37.80 E-value=6.1 Score=37.89 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.9
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.+++++|++.+| +.+|+ |+| || |+..
T Consensus 50 ~~~~~~l~f~~g-~n~i~--------G~NGaGKS~lleA 79 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFT--------GETGAGKSIIVDA 79 (517)
T ss_dssp TBSCEEEECCCS-EEEEE--------ESHHHHHHHHTHH
T ss_pred ceeeEEEecCCC-eEEEE--------cCCCCCHHHHHHH
Confidence 578899999999 99999 999 99 6666
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=37.35 E-value=47 Score=28.54 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHhcCC-CEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 245 MARLFYHRP-QFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 245 iARaL~~~P-~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
+..++...| .++++||. ..+++.....+.+.+.+
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 344444444 79999998 45788888889888875
No 231
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=36.41 E-value=7 Score=33.17 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=16.5
Q ss_pred ceeeeeEEEe---CCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVR---GALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~---~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
-|.+.||.+. +|..++|. |++ || +.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~--------G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFE--------GPEGSGKTTVINE 45 (229)
T ss_dssp --------CCCCCCCEEEEEE--------CCTTSCHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEE--------cCCCCCHHHHHHH
Confidence 3566666665 89999999 999 99 7766
No 232
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.29 E-value=35 Score=29.27 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=24.9
Q ss_pred HhcCCCEEEEeccccC-CCH----HHHHHHHHHHHhcCcEEEEEec
Q psy11400 249 FYHRPQFAILDECTSA-VSV----DVEGSMYEYCREVGITLFTVSH 289 (298)
Q Consensus 249 L~~~P~iliLDEPTs~-LD~----~~~~~i~~~l~~~~~TiIiitH 289 (298)
+..+|+++|+||+-.. .+. ...+.+.+ +...+..++.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~-~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQE-LLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHH-HHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHH-HHcCCCCEEEEcc
Confidence 4468999999997642 221 12233333 3345888888888
No 233
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.36 E-value=28 Score=30.72 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=29.7
Q ss_pred HHHHHHHHHh---cCCCEEEEeccccCCCH--------HH----HH----HHHHHHHhcCcEEEEEecC
Q psy11400 241 QRVAMARLFY---HRPQFAILDECTSAVSV--------DV----EG----SMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 241 QRlaiARaL~---~~P~iliLDEPTs~LD~--------~~----~~----~i~~~l~~~~~TiIiitH~ 290 (298)
+-+..++.++ .+|+++|+|.-++-... .. .. .+..+.++.+++||++.|-
T Consensus 190 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 3444455555 45899999998764311 11 11 2233345568999998873
No 234
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=34.83 E-value=2.2 Score=34.92 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=21.7
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+++++||..++. .++++ |++ || |++.
T Consensus 15 ~l~~~~~~~~~~-ki~lv--------G~~~vGKSsLi~~ 44 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFL--------GLDNAGKTTLLHM 44 (198)
T ss_dssp HHHHHTCTTCCE-EEEEE--------EETTSSHHHHHHH
T ss_pred HHHHhhccCCCc-EEEEE--------CCCCCCHHHHHHH
Confidence 889999988877 57899 998 99 6665
No 235
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=34.15 E-value=56 Score=30.33 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=39.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289 (298)
Q Consensus 233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH 289 (298)
..||..+.+|+.-|...+.+.++.+.|+|...++ +....+.++.++.+..+|+|-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~-~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLM-EVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHH-HHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH-HHHHHHHHHHHHcCCCEEEEcC
Confidence 3699999999998888888888999887644332 2233444555556777887754
No 236
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.01 E-value=61 Score=25.58 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=28.2
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCc
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRK 291 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l 291 (298)
.++.++++||.-. ++......+.+.+.+. +..+|+++.+.
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 3688999999654 6667777777777652 45667777654
No 237
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=33.41 E-value=1.1e+02 Score=25.96 Aligned_cols=59 Identities=3% Similarity=-0.040 Sum_probs=42.1
Q ss_pred CCCCChhHHHHHHHHHHHhcC--CCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400 232 IDVLSGGEKQRVAMARLFYHR--PQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK 291 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~--P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l 291 (298)
++...+.+..|+.+-+..+.. |+++=+ |-+...+......+.+..++.+..+|.+-|+.
T Consensus 75 GG~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf 135 (238)
T 1sfl_A 75 GGYGQFTNDSYLNLISDLANINGIDMIDI-EWQADIDIEKHQRIITHLQQYNKEVIISHHNF 135 (238)
T ss_dssp TSCBCCCHHHHHHHHHHGGGCTTCCEEEE-ECCTTSCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEE-EccCCCChHHHHHHHHHHHhcCCEEEEEecCC
Confidence 556677888999999888854 676544 54433366666677777666678899999984
No 238
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=32.92 E-value=36 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=28.8
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
.+++++++||.-- +++...+.+..+..+ +..+++..++.+
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHHHC-CCCEEEEeeccc
Confidence 3678999999865 665555555555544 899999998655
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=32.72 E-value=78 Score=28.29 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q psy11400 242 RVAMARLFYHRPQFAILDEC 261 (298)
Q Consensus 242 RlaiARaL~~~P~iliLDEP 261 (298)
+-.+..|-..+|.+|++||.
T Consensus 166 ~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHHhcCCeEEEEeCc
Confidence 33455555678999999998
No 240
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=32.19 E-value=57 Score=26.43 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=24.6
Q ss_pred cCCCEEEEeccccCCC-HHHHHHHHHHHHh---cCcE-EEEEecC
Q psy11400 251 HRPQFAILDECTSAVS-VDVEGSMYEYCRE---VGIT-LFTVSHR 290 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD-~~~~~~i~~~l~~---~~~T-iIiitH~ 290 (298)
.+|.++++||...--+ ......+.+.+.. .+.. +|++++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5789999999765432 3234555555432 3544 7777764
No 241
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=31.60 E-value=4.4 Score=34.96 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=24.5
Q ss_pred HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256 (298)
Q Consensus 206 i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il 256 (298)
+.++-+.+|. .+.+| .+..||||+.|+...+|+|+..|+-+
T Consensus 55 i~~le~~lg~-~L~~R---------~~~~lsg~~~~lt~~g~~l~~~~~~~ 95 (265)
T 1b9m_A 55 INEMNQLSEH-ILVER---------ATGGKGGGGAVLTRYGQRLIQLYDLL 95 (265)
T ss_dssp HHHHHHHHTS-CCEEE---------CCCC-----EEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CeEEe---------cCCCCCCCceEECHHHHHHHHHHHHH
Confidence 4444455555 34443 35689999999999999999988743
No 242
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=30.99 E-value=55 Score=27.68 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=29.5
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL 293 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~ 293 (298)
+.+++++||.-- +|++..+.+.++ ...++.||+..+|.+.
T Consensus 101 ~~dvViIDEaQF-~~~~~V~~l~~l-~~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVEVVQVL-ANRGYRVIVAGLDQDF 140 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHHHHHHH-HHTTCEEEEEECSBCT
T ss_pred CCCEEEEECccc-CCHHHHHHHHHH-hhCCCEEEEEeccccc
Confidence 579999999987 776555444443 4459999999997764
No 243
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=30.27 E-value=94 Score=26.91 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCEEEEecccc-------------CCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 244 AMARLFYHRPQFAILDECTS-------------AVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs-------------~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
.+..|.-..|.++++||.-+ +........++..+.. .+..+|.+|++++.
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 34555556899999999753 1222334455555542 25678889998753
No 244
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=30.20 E-value=14 Score=29.08 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=16.8
Q ss_pred eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
++..+.+.+| ..+|+ ||| || |+..
T Consensus 15 ~~~~i~f~~g-~~~I~--------G~NGsGKStil~A 42 (149)
T 1f2t_A 15 SDTVVEFKEG-INLII--------GQNGSGKSSLLDA 42 (149)
T ss_dssp SSEEEECCSE-EEEEE--------CCTTSSHHHHHHH
T ss_pred cceEEEcCCC-eEEEE--------CCCCCCHHHHHHH
Confidence 3344555544 88999 999 99 7666
No 245
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=30.19 E-value=17 Score=33.56 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW 294 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~ 294 (298)
.|-++++||..+-+.......+....++.|..++++++.++-+
T Consensus 279 ~~~~~~lDE~~~l~~~~~l~~~~~~~R~~g~~~~~~~Qs~~ql 321 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQL 321 (437)
T ss_dssp CCEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred ccEEEEEEcccccccchhHHHHHHHHhccCCEEEEEecCHHHH
Confidence 3568999999987643334445556667799999999998744
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=29.53 E-value=7.4 Score=34.63 Aligned_cols=35 Identities=11% Similarity=-0.070 Sum_probs=25.6
Q ss_pred ee-eeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400 106 FD-YMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT 160 (298)
Q Consensus 106 ~~-isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~ 160 (298)
++ ++|+.+ |++++++ |++ || ++.. + ++.+.+.+++
T Consensus 89 ~~~i~~~~~-~~vi~i~--------G~~G~GKTT~~~~-------l----a~~~~~~g~~ 128 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLV--------GVQGTGKTTTAGK-------L----AYFYKKKGFK 128 (297)
T ss_dssp CCCCSCSSS-SEEEEEE--------CSSCSSTTHHHHH-------H----HHHHHHTTCC
T ss_pred ccccccCCC-CeEEEEE--------CCCCCCHHHHHHH-------H----HHHHHHCCCe
Confidence 45 777776 9999999 999 99 5555 5 6666555444
No 247
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=29.25 E-value=12 Score=30.05 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=12.1
Q ss_pred ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+++++++..++. .++++ |++ || |++.
T Consensus 13 ~l~~~~~~~~~~-ki~~v--------G~~~vGKSsli~~ 42 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFL--------GLDNAGKTTLLHM 42 (190)
T ss_dssp -----------C-EEEEE--------ESTTSSHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEE--------CCCCCCHHHHHHH
Confidence 789999998877 78999 998 99 6655
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=28.28 E-value=1.3e+02 Score=28.29 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=29.8
Q ss_pred HHHHHHHHHHh--cCCCEEEEeccccCC-------CH-H----HHHHHHHHHHhcCcEEEEEecC
Q psy11400 240 KQRVAMARLFY--HRPQFAILDECTSAV-------SV-D----VEGSMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 240 kQRlaiARaL~--~~P~iliLDEPTs~L-------D~-~----~~~~i~~~l~~~~~TiIiitH~ 290 (298)
.+-++.++.+. .+|+++|+|=-+ .+ +. . ....+..+.++.+++||+++|-
T Consensus 340 ~~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~ 403 (503)
T 1q57_A 340 DRLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 403 (503)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcC
Confidence 34445555554 469999999433 22 11 1 1123344456679999999984
No 249
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.01 E-value=69 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=30.0
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcc
Q psy11400 252 RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~ 292 (298)
++.++++||+- .++......+.+.+.+. +..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999965 46777788888888763 566777777654
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=27.53 E-value=1.7e+02 Score=26.37 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHH--h--cCCCEEEEeccccCCC-H----H---------HHH--------HHHHHHHhcCcEEEEEecC
Q psy11400 237 GGEKQRVAMARLF--Y--HRPQFAILDECTSAVS-V----D---------VEG--------SMYEYCREVGITLFTVSHR 290 (298)
Q Consensus 237 gGqkQRlaiARaL--~--~~P~iliLDEPTs~LD-~----~---------~~~--------~i~~~l~~~~~TiIiitH~ 290 (298)
-++++.+.++.++ + .+|+++|+|=-++-.. . . .+. .+..++++.++++|++-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566667777776 4 3699999997665531 0 0 111 1223456679999999986
Q ss_pred cc
Q psy11400 291 KS 292 (298)
Q Consensus 291 l~ 292 (298)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 43
No 251
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=26.80 E-value=91 Score=29.10 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHH-HHHHHHHHHhcCcE--EEEEec
Q psy11400 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV-EGSMYEYCREVGIT--LFTVSH 289 (298)
Q Consensus 235 LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~-~~~i~~~l~~~~~T--iIiitH 289 (298)
|+..+.+|+.-|...+.+.++.|.|+|. ++... ...+.++.++.+.. +|+|-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888888888887777777888888764 44433 23344444445666 777654
No 252
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=26.74 E-value=1.2e+02 Score=26.17 Aligned_cols=58 Identities=5% Similarity=0.013 Sum_probs=38.8
Q ss_pred CCCCChhHHHHHHHHHHHhcC--CCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 232 IDVLSGGEKQRVAMARLFYHR--PQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 232 ~~~LSgGqkQRlaiARaL~~~--P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
++...+.+..++.+.+.++.. ++++=+ |-+ .+.+....+.+..++.+..+|++.|+.+
T Consensus 91 GG~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~--~~~~~~~~l~~~a~~~~~kiI~S~Hdf~ 150 (258)
T 4h3d_A 91 GGEKLISRDYYTTLNKEISNTGLVDLIDV-ELF--MGDEVIDEVVNFAHKKEVKVIISNHDFN 150 (258)
T ss_dssp TCSCCCCHHHHHHHHHHHHHTTCCSEEEE-EGG--GCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCchhhHH-hhh--ccHHHHHHHHHHHHhCCCEEEEEEecCC
Confidence 556777788888888777655 444332 332 3445556677776777888999999864
No 253
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=25.11 E-value=54 Score=27.65 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHHh---cCCCEEEEeccccCCCHHHHHHHHHHHHh------cCcEEEEEecCcch
Q psy11400 236 SGGEKQRVAMARLFY---HRPQFAILDECTSAVSVDVEGSMYEYCRE------VGITLFTVSHRKSL 293 (298)
Q Consensus 236 SgGqkQRlaiARaL~---~~P~iliLDEPTs~LD~~~~~~i~~~l~~------~~~TiIiitH~l~~ 293 (298)
+.|++.+-.+.+++. ..|+++|+--..+.+..... .+.+.+.+ .+.++|+++|..++
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ-QAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH-HHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344555566777764 88887777655455654433 33444433 26899999997765
No 254
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.44 E-value=90 Score=27.43 Aligned_cols=46 Identities=9% Similarity=0.087 Sum_probs=32.8
Q ss_pred HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHR 290 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~ 290 (298)
-..-+..+.+++++||+...+.......+.+.+.+. +..+|+++..
T Consensus 69 ~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 69 QAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp HHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred cCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 344567788999999997767777777788888763 4445555544
No 255
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.01 E-value=1.3e+02 Score=27.88 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCEEEEeccccCC----------CHHHHHHHHHHHHh-------cCcEEEEEecCcchh
Q psy11400 242 RVAMARLFYHRPQFAILDECTSAV----------SVDVEGSMYEYCRE-------VGITLFTVSHRKSLW 294 (298)
Q Consensus 242 RlaiARaL~~~P~iliLDEPTs~L----------D~~~~~~i~~~l~~-------~~~TiIiitH~l~~~ 294 (298)
|-.+..|--..|.++++||.-+-. |......+.+++.+ .+..||..|.|++.+
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 445666667889999999987654 22334444444433 245788899988653
No 256
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=23.90 E-value=35 Score=26.35 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=25.9
Q ss_pred cCCCEEEEeccccCCC-------HHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400 251 HRPQFAILDECTSAVS-------VDVEGSMYEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD-------~~~~~~i~~~l~~~~~TiIiitH~l~ 292 (298)
.+|.++++||.-.-.+ ......+..++...+..+|.+|.+..
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 4577999999866442 12234444555555677788877654
No 257
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.67 E-value=86 Score=23.97 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-CcEEEEEe-cCc
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-GITLFTVS-HRK 291 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-~~TiIiit-H~l 291 (298)
-+--|..+.+++++.+|...+.....+.+.+++... .-|++++. +++
T Consensus 69 ~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kl 117 (140)
T 1jql_B 69 QAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKL 117 (140)
T ss_dssp HCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSC
T ss_pred hcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCc
Confidence 333457788899999998767666666677777753 34444444 444
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=23.66 E-value=1.6e+02 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHhcCCCEEEEeccccC
Q psy11400 245 MARLFYHRPQFAILDECTSA 264 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~ 264 (298)
+..|.-..|.++++||.-.-
T Consensus 91 ~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHHHHHTCSEEEEEECC---
T ss_pred HHHHHhcCCeEEEEeCcchh
Confidence 44444567899999998764
No 259
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=23.58 E-value=11 Score=30.69 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-cCcEEEEEecCcch
Q psy11400 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-VGITLFTVSHRKSL 293 (298)
Q Consensus 235 LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-~~~TiIiitH~l~~ 293 (298)
.+.|+.+|..+++.+..+|+.+-.+ ++.++|.....+.+.+.. .+.++|+.+|.+..
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e 117 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIE 117 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTT
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhh
Confidence 4678999999999998888654333 345567766666666654 35578888886643
No 260
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=22.99 E-value=1.1e+02 Score=25.20 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEecccc-CCCHHHHH-HHHHHHH
Q psy11400 235 LSGGEKQRVAMARLFYHRPQFAILDECTS-AVSVDVEG-SMYEYCR 278 (298)
Q Consensus 235 LSgGqkQRlaiARaL~~~P~iliLDEPTs-~LD~~~~~-~i~~~l~ 278 (298)
.+.|.-.+.. +..+.+.+++|+||+-. ++|..... .+.+.+.
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 3567666653 34688999999999976 57766553 3333433
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=22.94 E-value=1.4e+02 Score=27.02 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=25.9
Q ss_pred HHHHHhcCCCEEEEeccccCCCHH------------HHHHH---HHHHHhcCcEEEEEecCcc
Q psy11400 245 MARLFYHRPQFAILDECTSAVSVD------------VEGSM---YEYCREVGITLFTVSHRKS 292 (298)
Q Consensus 245 iARaL~~~P~iliLDEPTs~LD~~------------~~~~i---~~~l~~~~~TiIiitH~l~ 292 (298)
+...+...+ ++|+||-.+--... ..+.+ ...+++.++|+|++++..+
T Consensus 176 i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~s 237 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTS 237 (331)
T ss_dssp HHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSS
T ss_pred HHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCcc
Confidence 334444444 99999977642211 11222 2233456899999988543
No 262
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=22.74 E-value=45 Score=29.38 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=25.2
Q ss_pred CCCEEEEeccccCCCHH-HHHHHHHHHH-------hcCcEEEEEecCcc
Q psy11400 252 RPQFAILDECTSAVSVD-VEGSMYEYCR-------EVGITLFTVSHRKS 292 (298)
Q Consensus 252 ~P~iliLDEPTs~LD~~-~~~~i~~~l~-------~~~~TiIiitH~l~ 292 (298)
+|.++++||.-.-.+.. ....+..+++ ..+..+|.+|++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 46799999987653221 3344555544 22568899998874
No 263
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.17 E-value=1.6e+02 Score=27.59 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccCC----------CHHHHHHHHHHHHh-------cCcEEEEEecCcchh
Q psy11400 240 KQRVAMARLFYHRPQFAILDECTSAV----------SVDVEGSMYEYCRE-------VGITLFTVSHRKSLW 294 (298)
Q Consensus 240 kQRlaiARaL~~~P~iliLDEPTs~L----------D~~~~~~i~~~l~~-------~~~TiIiitH~l~~~ 294 (298)
.-|-.+..|-...|.|+++||.-+-. |......+..++.. .+.-||..|.+++.+
T Consensus 262 ~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 34566777778899999999987543 23333444444432 145788899987643
No 264
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=22.00 E-value=90 Score=27.53 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=30.6
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcc
Q psy11400 251 HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292 (298)
Q Consensus 251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~ 292 (298)
.+++++|+||+-. |.......+.+.+.+. +..+|++|++++
T Consensus 107 ~~~kvviIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 3678999999854 6667777788888763 466778888765
No 265
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=21.70 E-value=35 Score=30.12 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=20.5
Q ss_pred hcCCCEEEEecccc-CCCHHHHHHH-HHHHH---hcCcEEEEEecC
Q psy11400 250 YHRPQFAILDECTS-AVSVDVEGSM-YEYCR---EVGITLFTVSHR 290 (298)
Q Consensus 250 ~~~P~iliLDEPTs-~LD~~~~~~i-~~~l~---~~~~TiIiitH~ 290 (298)
+.++++||+||.-. .++......+ ..++. ..++.+|++|+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 45789999999832 3333322222 22332 235566666663
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=21.54 E-value=8.9 Score=31.69 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.8
Q ss_pred CcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 115 ALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 115 g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
+.+++|+ |++ || +.++
T Consensus 5 ~~~i~i~--------G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITID--------GPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEE--------CCTTSSHHHHHHH
T ss_pred CeEEEEE--------CCCCCCHHHHHHH
Confidence 5689999 999 99 7777
No 267
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=21.40 E-value=2.4e+02 Score=25.01 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCEEEEeccccCCCH----------HHHHHHHHHHHh-----cCcEEEEEecCcch
Q psy11400 244 AMARLFYHRPQFAILDECTSAVSV----------DVEGSMYEYCRE-----VGITLFTVSHRKSL 293 (298)
Q Consensus 244 aiARaL~~~P~iliLDEPTs~LD~----------~~~~~i~~~l~~-----~~~TiIiitH~l~~ 293 (298)
.+..|-..+|.+|++||.-+-... .....++..+.. .+..+|.+|+++..
T Consensus 135 ~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred HHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 334444568999999998754321 123334444431 24566667877643
No 268
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=21.39 E-value=2.1e+02 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=33.1
Q ss_pred cCCCEEEEe-ccccCCCHHHHHHHHHHH---HhcCcEEEEEecCcch
Q psy11400 251 HRPQFAILD-ECTSAVSVDVEGSMYEYC---REVGITLFTVSHRKSL 293 (298)
Q Consensus 251 ~~P~iliLD-EPTs~LD~~~~~~i~~~l---~~~~~TiIiitH~l~~ 293 (298)
..|+.++|| ...+.+|......+.++. ++.|.+++++.-+...
T Consensus 47 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRV 93 (130)
T ss_dssp SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 578999999 899999998777666654 4468888888765543
No 269
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=21.27 E-value=16 Score=28.83 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=15.7
Q ss_pred eCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 113 RGALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.+|++++|+ |++ || +.+.
T Consensus 6 ~~g~~i~l~--------G~~GsGKSTl~~~ 27 (175)
T 1knq_A 6 HDHHIYVLM--------GVSGSGKSAVASE 27 (175)
T ss_dssp TTSEEEEEE--------CSTTSCHHHHHHH
T ss_pred CCCcEEEEE--------cCCCCCHHHHHHH
Confidence 468999999 999 99 7777
No 270
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=21.26 E-value=1.2e+02 Score=28.80 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCEEEEeccc----------cCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400 243 VAMARLFYHRPQFAILDECT----------SAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL 293 (298)
Q Consensus 243 laiARaL~~~P~iliLDEPT----------s~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~ 293 (298)
-.+..|--..|.+|+|||.- +.+.......++..+.. .+..+|.+|++.+.
T Consensus 288 ~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 35666667789999999972 11222444556665553 24567778887743
No 271
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=21.13 E-value=19 Score=32.63 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHh--------cCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400 237 GGEKQRVAMARLFY--------HRPQFAILDECTSAVSVDVEGSMYEYCRE 279 (298)
Q Consensus 237 gGqkQRlaiARaL~--------~~P~iliLDEPTs~LD~~~~~~i~~~l~~ 279 (298)
+++++.-.+.+++- ..|+++. +|+++......+++.+.+
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~----iSA~~g~Gi~~L~~~I~~ 275 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIR----ISARSGEGISEMWDKMKD 275 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEE----CCTTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEE----EecCCCCCHHHHHHHHHH
Confidence 44555555655542 2566654 999998877777766554
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=20.27 E-value=18 Score=28.22 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.6
Q ss_pred CCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400 114 GALNLLWPLFGGTVTKPPR--GK--LFYV 138 (298)
Q Consensus 114 ~g~~~~i~~~~~~~~~G~s--GK--L~~~ 138 (298)
.|++++|+ |++ || +.++
T Consensus 3 ~~~~i~l~--------G~~GsGKSTl~~~ 23 (173)
T 1kag_A 3 EKRNIFLV--------GPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCCEEEE--------CCTTSCHHHHHHH
T ss_pred CCCeEEEE--------CCCCCCHHHHHHH
Confidence 46789999 999 99 7777
No 273
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.01 E-value=1.9e+02 Score=32.10 Aligned_cols=48 Identities=6% Similarity=0.104 Sum_probs=31.0
Q ss_pred HHHHHHHh--cCCCEEEEeccccCCCH--------------HHH---HHH---HHHHHhcCcEEEEEecC
Q psy11400 243 VAMARLFY--HRPQFAILDECTSAVSV--------------DVE---GSM---YEYCREVGITLFTVSHR 290 (298)
Q Consensus 243 laiARaL~--~~P~iliLDEPTs~LD~--------------~~~---~~i---~~~l~~~~~TiIiitH~ 290 (298)
+.+++.++ .+|+++++|..++-... ..+ ..+ ..++++.++++|+++|-
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 45556554 57999999998876641 111 122 22345679999999884
Done!