RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11400
(298 letters)
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 334 bits (857), Expect = e-110
Identities = 157/313 (50%), Positives = 198/313 (63%), Gaps = 48/313 (15%)
Query: 3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMV- 61
+ ++Y GR+L+K A+A+GRL+LAGR+MTRLAGFTAR+ +++VL D+ G + R V
Sbjct: 365 LMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVE 424
Query: 62 --------TQNGVDSLSEGIFIYRNNLRGRLGITLGLRSG-----GLGFDSRWGRSFFDY 108
+N GI Y++N I L +G L F+ G
Sbjct: 425 EIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGN----- 479
Query: 109 MFGVRGALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP 165
NLL + P + LF + LG +LWP++GG +TKP
Sbjct: 480 --------NLL-------ICGPNGCGKSSLFRI-------LG----ELWPVYGGRLTKPA 513
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
+GKLFYVPQRPYMTLGTLRDQ+IYP + EDM ++G++D DL + L VQL +IL RE GW
Sbjct: 514 KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW 573
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG MY CRE GITLF
Sbjct: 574 SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLF 633
Query: 286 TVSHRKSLWTHHE 298
+VSHRKSLW +HE
Sbjct: 634 SVSHRKSLWKYHE 646
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 164 bits (418), Expect = 8e-51
Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 40/146 (27%)
Query: 153 LWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
LWP G + P L ++PQRPY+ LGTLR+Q+IYP
Sbjct: 50 LWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---------------------- 87
Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
W DVLSGGE+QR+A ARL H+P+F LDE TSA+ + E
Sbjct: 88 ------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
Query: 273 MYEYCREVGITLFTVSHRKSLWTHHE 298
+Y+ +E+GIT+ +V HR SLW H+
Sbjct: 130 LYQLLKELGITVISVGHRPSLWKFHD 155
Score = 66.0 bits (162), Expect = 3e-13
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 115 ALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQL 153
AL LWP G + P L ++PQRPY+ LGTLR+QL
Sbjct: 46 ALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQL 84
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 151 bits (384), Expect = 9e-42
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 10/148 (6%)
Query: 153 LWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
LWP G ++ P L ++PQRPY+ GTLR+ + YP+ D +DA+L L K
Sbjct: 442 LWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPD-----FSDAELVAVLHK 496
Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
V LG + R D W VLSGGE+QR+A ARL H+P++ LDE TSA+ + E
Sbjct: 497 VGLGDLAER---LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553
Query: 273 MYEYCREV--GITLFTVSHRKSLWTHHE 298
+Y+ +E T+ +V HR +LW H
Sbjct: 554 LYQLLKEELPDATVISVGHRPTLWNFHS 581
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 73.8 bits (182), Expect = 1e-14
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ +V Q PY+ GT+R+ ++ + + +D ++ L + L + + G
Sbjct: 394 RKQISWVSQNPYLFAGTIRENIL-------LARPDASDEEIIAALDQAGLLEFVPKPDGL 446
Query: 226 DT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE------GSMYEYCR 278
DT + + LSGG+ QR+A+AR +LDE T+ +D E ++ E +
Sbjct: 447 DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA--HLDAETEQIILQALQELAK 504
Query: 279 EVGITLFTVSHR 290
+ T+ ++HR
Sbjct: 505 QK--TVLVITHR 514
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 73.1 bits (180), Expect = 2e-14
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R ++ +VPQ P++ GT+ + + P + I++ + A L E++ +
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVA--------ALPQ 446
Query: 224 GWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
G DT LSGG+ QR+A+AR F +LDE T+ + + E + E R +
Sbjct: 447 GLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ 506
Query: 281 GITLFTVSHRKSL 293
G T+ V+HR +L
Sbjct: 507 GRTVLLVTHRLAL 519
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 71.1 bits (175), Expect = 8e-14
Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 15/134 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVI--YPHTKEDMIQKGITDADLTEYLQKVQLGY--ILNR 221
R ++ YV Q P++ G++R+ + P ++ I + A E+++ + +GY +
Sbjct: 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG- 604
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-- 279
E G LSGG++QR+A+AR +P+ +LDE TSA+ + E + + +
Sbjct: 605 EGG--------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 280 VGITLFTVSHRKSL 293
G T+ ++HR S
Sbjct: 657 QGRTVIIIAHRLST 670
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 70.2 bits (172), Expect = 2e-13
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R ++ V Q P + GT+R+ + + + TD ++ E L+ +I N G
Sbjct: 402 RKRIGIVSQDPLLFSGTIRENI-------ALGRPDATDEEIEEALKLANAHEFIANLPDG 454
Query: 225 WDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
+DT+ V LSGG++QR+A+AR P ILDE TSA+ + E + + +++ G
Sbjct: 455 YDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKG 514
Query: 282 ITLFTVSHRKSLWTH 296
T ++HR S +
Sbjct: 515 RTTLIIAHRLSTIKN 529
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 66.3 bits (163), Expect = 3e-13
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 201 ITDADLTEYLQKV----QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256
+ D DL + + Q ++ + T+ + ++LSGG++QR+A+AR P
Sbjct: 66 LRDLDLESLRKNIAYVPQDPFLFS-----GTIRE--NILSGGQRQRIAIARALLRDPPIL 118
Query: 257 ILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293
ILDE TSA+ + E + E R + G T+ ++HR S
Sbjct: 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 66.1 bits (162), Expect = 9e-13
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R + V Q ++ GT+ + + P+ ++ + + +A ++ I+
Sbjct: 76 RSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF--------IMKLPN 127
Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
G+DT + + LS GE+Q +A+AR P+ ILDE TS + + E + E ++
Sbjct: 128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK 187
Query: 281 GITLFTVSHRKS 292
G T ++HR S
Sbjct: 188 GRTSIIIAHRLS 199
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 66.8 bits (164), Expect = 2e-12
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILN-RE 222
R + YVPQ P + GTLRD + P+ ++ I + A +TE++++ G + E
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597
Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
+G LSGG++Q VA+AR P +LDE TSA+ E + +
Sbjct: 598 RG--------RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649
Query: 281 GITLFTVSHRKSL 293
G TL V+HR SL
Sbjct: 650 GKTLVLVTHRTSL 662
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 63.8 bits (156), Expect = 5e-12
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVI--YPHTKEDMIQKGITDADLTEYLQKVQLGYILN-RE 222
R + YVPQ + GTLRD + P ++ I + A +T+++ K G L E
Sbjct: 77 RRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
+G LSGG++Q VA+AR + P +LDE TSA+ ++ E + E R++
Sbjct: 137 RG--------RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188
Query: 281 GITLFTVSHRKSL 293
TL ++HR SL
Sbjct: 189 DKTLIIITHRPSL 201
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 62.8 bits (153), Expect = 1e-11
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 22/137 (16%)
Query: 159 GTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQLG 216
G + + + ++ YVPQ+ Y+ TL P T ++ G D+ L++VQ G
Sbjct: 59 GVIKRNGKLRIGYVPQKLYLD-TTL------PLTVNRFLRLRPGTKKEDILPALKRVQAG 111
Query: 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY 276
++++ + LSGGE QRV +AR +RPQ +LDE T V V+ + ++Y+
Sbjct: 112 HLIDAP---------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162
Query: 277 C----REVGITLFTVSH 289
RE+ + VSH
Sbjct: 163 IDQLRRELDCAVLMVSH 179
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 64.1 bits (157), Expect = 2e-11
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
V QR ++ TLRD ++ + +D L E LQ+V L +L +KG + W
Sbjct: 419 VSQRVHLFSATLRDNLL-------LAAPNASDEALIEVLQQVGLEKLLEDDKGLNA---W 468
Query: 232 ID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLF 285
+ LSGGE++R+ +AR H +LDE T + + E + E E T+
Sbjct: 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVL 528
Query: 286 TVSHR 290
++HR
Sbjct: 529 MITHR 533
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 60.7 bits (148), Expect = 2e-11
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
LSGG++QRVA+AR P +LDE TS + + E RE+ G T+ V+H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 61.7 bits (150), Expect = 3e-11
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 145 TLGTLRDQLWPLFGGTVT---KPP--------RGKLFYVPQRPYMTLGTLRDQVIY--PH 191
T+ L + + GG V KP K+ V Q P + +L+D + Y
Sbjct: 55 TVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS 114
Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
+ +++ A ++ ++ GY V + LSGG+KQRVA+AR
Sbjct: 115 CSFECVKEAAQKAHAHSFISELASGY-------DTEVGEKGSQLSGGQKQRVAIARALIR 167
Query: 252 RPQFAILDECTSAVSVDVEGSMYE--YCREVGITLFTVSHRKSL 293
PQ ILDE TSA+ + E + + Y T+ ++HR S
Sbjct: 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 61.5 bits (150), Expect = 5e-11
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 156 LFGGTVTK-PPRGKLFYVPQRPYMTLG---TLRDQV---IYPHTKEDMIQKGITDADLTE 208
+FG V K R ++ YVPQ+ + T++D V Y + E
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122
Query: 209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
L++V + + +R+ I LSGG+KQRV +AR P +LDE + V V
Sbjct: 123 ALERVGMEDLRDRQ---------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 269 VEGSMYEY---CREVGITLFTVSH 289
+ +Y+ R+ G T+ V+H
Sbjct: 174 GQKEIYDLLKELRQEGKTVLMVTH 197
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 60.7 bits (148), Expect = 6e-11
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 27/139 (19%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKG---ITDADLTEYLQKVQL-GYILNR 221
R + VPQ D V++ T I+ G TD ++ E + Q+ I+
Sbjct: 74 RRAIGVVPQ----------DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRF 123
Query: 222 EKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
G+DT+ V LSGGEKQRVA+AR P +LDE TSA+ E +
Sbjct: 124 PDGYDTI-----VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 276 YCREV--GITLFTVSHRKS 292
R+V G T ++HR S
Sbjct: 179 ALRDVSKGRTTIVIAHRLS 197
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 60.2 bits (147), Expect = 7e-11
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 38/138 (27%)
Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI--YPHTKE-------------DMIQK 199
G+V+ P G + YV Q P++ GT+R+ ++ P +E D+ +
Sbjct: 56 EKLSGSVSVP--GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDL--E 111
Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
+ D DLTE +G EKG I+ LSGG+KQR+++AR Y +LD
Sbjct: 112 ILPDGDLTE------IG-----EKG-------IN-LSGGQKQRISLARAVYSDADIYLLD 152
Query: 260 ECTSAVSVDVEGSMYEYC 277
+ SAV V ++E C
Sbjct: 153 DPLSAVDAHVGRHIFENC 170
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 62.0 bits (151), Expect = 9e-11
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 162 TKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILN 220
+ R + + QR ++ GTLRD + + +D +L LQ+V L + +
Sbjct: 407 EQALRETISVLTQRVHLFSGTLRDNLR-------LANPDASDEELWAALQQVGLEKLLES 459
Query: 221 REKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY 276
G +T W+ LSGGE++R+A+AR H +LDE T + E +
Sbjct: 460 APDGLNT---WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 277 CREV--GITLFTVSHR 290
E G TL V+HR
Sbjct: 517 LFEHAEGKTLLMVTHR 532
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 59.9 bits (146), Expect = 1e-10
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R ++ V Q P + GT+ + + Y P ++ +++ A++ ++ I++
Sbjct: 76 RSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDF--------IMSLPD 127
Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
G+DT V + LSGG+KQR+A+AR P+ +LDE TSA+ + E + E
Sbjct: 128 GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK 187
Query: 281 GITLFTVSHRKS 292
G T ++HR S
Sbjct: 188 GRTTIVIAHRLS 199
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 59.6 bits (145), Expect = 3e-10
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 24/145 (16%)
Query: 156 LFGGTVTKPP---RGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210
+ G V K P R ++ YVPQ P Y L T+R+ + + + + K + + E L
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPEL-TVRENLEF-FARLYGLSKEEAEERIEELL 121
Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
+ L N++ + LSGG KQR+++A H P+ ILDE TS +D E
Sbjct: 122 ELFGLEDKANKK---------VRTLSGGMKQRLSIALALLHDPELLILDEPTSG--LDPE 170
Query: 271 GS------MYEYCREVGITLFTVSH 289
+ E +E G+T+ +H
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTH 195
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 60.3 bits (147), Expect = 3e-10
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 127 VTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTL---GTL 183
+ P G + + Q +T G LR R ++ V Q PY +L T+
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRL-------------RRRIQMVFQDPYSSLNPRMTV 386
Query: 184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQR 242
D + P A + E L+ V L L+R + LSGG++QR
Sbjct: 387 GDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR---------YPHELSGGQRQR 437
Query: 243 VAMARLFYHRPQFAILDECTSA--VSV--DVEGSMYEYCREVGITLFTVSH 289
VA+AR P+ ILDE SA VSV V + + E+G+T +SH
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488
Score = 49.1 bits (118), Expect = 1e-06
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 37/143 (25%)
Query: 166 RGKLF-YVPQRPYMT----LGTLRDQVI------YPHTKEDMIQKGITDADLTEYLQKVQ 214
RGK + Q P MT + T+ DQ+ ++ + ++ + E L++V
Sbjct: 89 RGKRIAMIFQDP-MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV------ELLEQVG 141
Query: 215 LGYILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
L + D LSGG +QRV +A +P+ I DE T+A+ V +
Sbjct: 142 LPD-----------PERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 271 ----GSMYEYCREVGITLFTVSH 289
+ + RE+G+ + ++H
Sbjct: 191 AQILDLLKDLQRELGMAVLFITH 213
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 57.2 bits (139), Expect = 4e-10
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 201 ITDADLTEYLQKVQLGYILNREKGWD-TVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
I+ D E +GY+ ++ + ++A+ I LSGG++QR+ +AR Y P+ +LD
Sbjct: 66 ISQWDPNELGD--HVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLD 121
Query: 260 ECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSL 293
E S + V+ E ++ + + G T ++HR
Sbjct: 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 58.4 bits (142), Expect = 4e-10
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 31/157 (19%)
Query: 156 LFGGTVTKPPRGKLFY-----VPQRPY------MTLGTLRDQVIYPHTKEDMIQKGITDA 204
L G + R K FY V Q PY T+G + + + PH Q+ I +
Sbjct: 66 LDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG-LSKSQQRIAEL 124
Query: 205 DLTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
L +V L L+R LSGG++QR+A+AR P+ ILDE TS
Sbjct: 125 -----LDQVGLPPSFLDR---------RPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 264 AVSVDVEGS----MYEYCREVGITLFTVSHRKSLWTH 296
A+ V V+ + E +E G+T +SH +L H
Sbjct: 171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH 207
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 58.0 bits (141), Expect = 6e-10
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTL--GTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
R K+ V Q P L T+ D+V + + ++ I + + E L+
Sbjct: 67 DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI-EERVAEALEL 125
Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
V L +L+R LSGG+KQRVA+A + P+ +LDE T+ +D +G
Sbjct: 126 VGLEELLDR---------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA--GLDPKGR 174
Query: 273 ------MYEYCREVGITLFTVSHR 290
+ + E G T+ V+H
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHD 198
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 55.4 bits (134), Expect = 7e-10
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 166 RGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
R ++ V Q P T+R+ + + ++ DA E L++V L L+RE
Sbjct: 35 RKRIGVVFQDPQLFPELTVRENLFFGLRDKEA------DARAEEALERVGLPDFLDREP- 87
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
+ LSGG+KQRVA+AR +P+ +LDE T+
Sbjct: 88 -------VGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 57.5 bits (140), Expect = 7e-10
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 155 PLFGGTVT---KPP---RGKLFYVPQRPYMTLG---TLRDQV---IYPHTKEDMIQKGIT 202
G++ KP R ++ YVPQR + ++RD V +Y H
Sbjct: 50 KPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD 109
Query: 203 DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
A + E L++V L + +R+ I LSGG++QRV +AR P +LDE
Sbjct: 110 KAKVDEALERVGLSELADRQ---------IGELSGGQQQRVLLARALVQDPDLLLLDEPF 160
Query: 263 SAVSVDVEGSMYEYCREV---GITLFTVSH 289
+ V + +YE RE+ G+T+ V+H
Sbjct: 161 AGVDPKTQEDIYELLRELRREGMTILVVTH 190
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 57.6 bits (139), Expect = 8e-10
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 158 GGTVT--KPP--RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDAD-LTEYLQK 212
G V+ KP R ++ Y Q P + T+ D +I+P I+ D + L +
Sbjct: 64 GEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPW----QIRNRRPDRAAALDLLAR 119
Query: 213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV---- 267
L IL + I LSGGEKQR+A+ R P+ +LDE TSA+
Sbjct: 120 FALPDSILTKN---------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170
Query: 268 DVEGSMYEYCREVGITLFTVSHRKSLWTHH 297
++E ++ Y RE + + ++H K H
Sbjct: 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRH 200
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 57.6 bits (140), Expect = 8e-10
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ V Q ++ T+ + + Y + ++ + +A + +I+ +G+
Sbjct: 75 RRQIGLVSQDVFLFNDTVAENIAY--GRPGATREEVEEAARAANAHE----FIMELPEGY 128
Query: 226 DTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGI 282
DTV V LSGG++QR+A+AR P ILDE TSA+ + E +
Sbjct: 129 DTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR 188
Query: 283 TLFTVSHRKS 292
T F ++HR S
Sbjct: 189 TTFVIAHRLS 198
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 56.7 bits (138), Expect = 1e-09
Identities = 34/129 (26%), Positives = 67/129 (51%), Gaps = 12/129 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R ++ +PQ P + GT+R + P + +D +L + L++V L ++ + G
Sbjct: 77 RSRISIIPQDPVLFSGTIRSN-LDPFGEY-------SDEELWQALERVGLKEFVESLPGG 128
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
DT V + + LS G++Q + +AR + + +LDE T++V + + + + RE
Sbjct: 129 LDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKD 188
Query: 282 ITLFTVSHR 290
T+ T++HR
Sbjct: 189 CTVLTIAHR 197
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 58.2 bits (141), Expect = 1e-09
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDT 227
V Q P + G++R+ + Y G+TD E + + +I+ G+DT
Sbjct: 560 VGQEPVLFSGSVRENIAY----------GLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT 609
Query: 228 VADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFT 286
LSGG+KQR+A+AR +P+ ILDE TSA+ + E + E T+
Sbjct: 610 EVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669
Query: 287 VSHRKSL 293
++HR S
Sbjct: 670 IAHRLST 676
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 56.4 bits (137), Expect = 2e-09
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233
Q+P G++ D V Y + K D + E L+K L WD V D +
Sbjct: 88 QKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL---------WDEVKDRLH 138
Query: 234 V--LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTV 287
LSGG++QR+ +AR + P+ +LDE TSA+ + +E + E +E I + V
Sbjct: 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI--V 196
Query: 288 SH 289
+H
Sbjct: 197 TH 198
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 58.2 bits (141), Expect = 2e-09
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY---PHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222
R + Y+PQ PY+ G++ + ++ + +D I A++ + ++ + LGY
Sbjct: 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY----- 601
Query: 223 KGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
T +++ +SGG+KQR+A+AR + ILDE TS + E
Sbjct: 602 ---QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 57.3 bits (139), Expect = 3e-09
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 202 TDADLTEYLQKVQ-LGYILNREKGWDTVA-DWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
TD ++ ++ Q +I + G+DTV + LSGGE+QR+A+AR P ILD
Sbjct: 437 TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496
Query: 260 ECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
E TSA+ V+ E + E+ G T F ++HR S
Sbjct: 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 56.9 bits (138), Expect = 4e-09
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 218 ILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE- 275
IL +G+DT + + LSGG++QR+A+AR Y P +LDE S + + E ++
Sbjct: 455 ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514
Query: 276 --YCREVGITLFTVSHRKSL 293
+ G T+ ++HR S
Sbjct: 515 ILAAKARGGTVVVIAHRPSA 534
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 54.8 bits (133), Expect = 7e-09
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258
G E L+ + L L ++K LSGG++QRVA+AR + P+ +
Sbjct: 115 AGRRKRAAEELLEVLGLEDRLLKKK--------PSELSGGQQQRVAIARALINNPKIILA 166
Query: 259 DECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
DE T + + +V + E +E G T+ V+H
Sbjct: 167 DEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 54.5 bits (132), Expect = 1e-08
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 31/137 (22%)
Query: 168 KLFYVPQRPYMTLG-TLRDQVI---YPH-------TKEDMIQKGITDADLTEYLQKVQLG 216
KL YVPQ P G T+ + V+ YPH +KED + E L+ + L
Sbjct: 77 KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE-------EIVEEALELLGLE 129
Query: 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGS 272
++ +R +D LSGGE+QRV +AR +LDE TS + ++V
Sbjct: 130 HLADRP---------VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 273 MYEYCREVGITLFTVSH 289
+ + RE G+T+ V H
Sbjct: 181 LRDLNREKGLTVVMVLH 197
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 54.4 bits (131), Expect = 1e-08
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDTVADWIDV-LSG 237
L++ V++ + D I + ++ +L +I +G+DT+ LSG
Sbjct: 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG 141
Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
G++QR+A+AR H P+ I DE TSA+ + E ++ ++ G T+ ++HR S
Sbjct: 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 55.4 bits (134), Expect = 1e-08
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 218 ILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMY 274
IL G+DT + LSGG++QR+A+AR Y P+ +LDE S ++D EG ++
Sbjct: 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS--NLDEEGEQALA 494
Query: 275 EYCREV---GITLFTVSHRKSL 293
+ + GIT+ ++HR SL
Sbjct: 495 NAIKALKARGITVVVITHRPSL 516
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 54.9 bits (132), Expect = 2e-08
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDT-VADWIDVLSG 237
+D ++ + + I+ G A E + + +IL R G+DT V + + LSG
Sbjct: 415 FQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474
Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY--CREVGITLFTVSHRKS 292
GE+QR+A+AR +LDE TSA+ V+ E + T F ++HR S
Sbjct: 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 52.4 bits (126), Expect = 4e-08
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 156 LFGGT--VTKPP---RGKLFYVPQRPYMTLGTLRDQVIYP------HTKEDMIQKGITDA 204
LF G T P R ++ Y Q P + T+ D +I+P + +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF 124
Query: 205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
L + IL + I LSGGEKQR+++ R P+ +LDE TSA
Sbjct: 125 ALPDT--------ILTKN---------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
Query: 265 VSVD----VEGSMYEYCREVGITLFTVSHRKSLWTH 296
+ V ++ Y RE I + V+H K H
Sbjct: 168 LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 52.1 bits (126), Expect = 6e-08
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRVA+AR + P+ + DE T + +V + E +E G T+ V+H
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 52.0 bits (125), Expect = 6e-08
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT----SAVSVDVEGSMYEYCREVGITLFTVSHR 290
LSGGE+QRVA+AR F RP DE T A + ++ RE G TL V+H
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206
Query: 291 KSL 293
L
Sbjct: 207 PQL 209
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 52.1 bits (125), Expect = 7e-08
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY-PHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
R K+ V Q+P++ GT++D + Y P + KG + D+ YL V L N+E
Sbjct: 76 RRKIGMVFQQPHLFEGTVKDNIEYGP------MLKGEKNVDVEYYLSIVGL----NKEYA 125
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREV 280
V + LSGGE QRV++AR + P+ +LDE TSA+ + +E + + ++
Sbjct: 126 TRDVKN----LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM 181
Query: 281 GITLFTVSH 289
+T+ ++H
Sbjct: 182 NLTVIWITH 190
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 50.5 bits (122), Expect = 9e-08
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV---- 265
L+ + L ++ +R + LSGGE+QRV +AR P +LDE TS +
Sbjct: 82 LELLGLAHLADRP---------FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
Query: 266 SVDVEGSMYEYCREVGITLFTVSH 289
+++ + RE G T+ V H
Sbjct: 133 QIELLELLRRLARERGKTVVMVLH 156
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 51.1 bits (123), Expect = 1e-07
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258
K + E L VQL NR+ LSGG++QRVA+AR + P+ +L
Sbjct: 104 KAEIKERVAEALDLVQLEGYANRK---------PSQLSGGQQQRVAIARALVNEPKVLLL 154
Query: 259 DECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
DE A+ + + M +E+GIT V+H
Sbjct: 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 49.5 bits (119), Expect = 3e-07
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
LSGG++QRVA+AR P +LDE TSA+ + + + GIT+ V+H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 49.6 bits (119), Expect = 4e-07
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
LSGG+KQRVA+AR HRP+ + DE T+A+ DV M + RE G T+ V+H
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 50.6 bits (122), Expect = 5e-07
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG 224
R L +V Q P + GTLRD V+ + +D L + L+ + L +G
Sbjct: 422 RKHLSWVGQNPQLPHGTLRDNVL-------LGNPDASDEQLQQALENAWVSEFLPLLPQG 474
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
DT + D LS G+ QR+A+AR Q +LDE T
Sbjct: 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 49.6 bits (119), Expect = 1e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292
LSGG++QR+ +AR P ILDE TSA+ + E + + R G T V+HR S
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLS 673
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 48.7 bits (117), Expect = 1e-06
Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 21/142 (14%)
Query: 156 LFGGTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
L G P + YV Q P++T+ D V + E L+
Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTV---LDNVALGLELRGKSKAE-ARERAKELLE 116
Query: 212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
V L ++ + LSGG +QRVA+AR RP+ +LDE A+
Sbjct: 117 LVGLAGFEDK---------YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167
Query: 272 SMYEY----CREVGITLFTVSH 289
+ + E T+ V+H
Sbjct: 168 ELQDELLRLWEETRKTVLLVTH 189
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 47.4 bits (114), Expect = 1e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
LS GE+Q V +AR + ILDE T+A++ +++ R + G+ + +SHR
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 48.5 bits (116), Expect = 1e-06
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPH-TKEDMIQKGI---------TDADLTEY 209
T P + + YVPQ + ++PH T I G+ + + E
Sbjct: 64 TNLPPEKRDISYVPQ----------NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEI 113
Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
+ + + ++LNR+ LSGGE+QRVA+AR P+ +LDE SA+ V
Sbjct: 114 AEMLGIDHLLNRKPE---------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164
Query: 270 EGS----MYEYCREVGITLFTVSH 289
+ + + +E G+T+ V+H
Sbjct: 165 KEKLREELKKIRKEFGVTVLHVTH 188
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 49.4 bits (118), Expect = 1e-06
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 217 YILNREKGWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
+I +G++T LSGG++QR+A+AR P+ I DE TSA+ + E +
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 276 YCREV--GITLFTVSHRKS 292
RE+ G T+ ++HR S
Sbjct: 635 NMREICRGRTVIIIAHRLS 653
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 48.8 bits (117), Expect = 1e-06
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 171 YVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
V Q P+MT+ + V + ++K A + E L+ V L +R
Sbjct: 81 MVFQSYALFPHMTV---EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR----- 132
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGI 282
LSGG++QRVA+AR P+ +LDE SA+ + M E RE+GI
Sbjct: 133 ----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188
Query: 283 TLFTVSH 289
T V+H
Sbjct: 189 TFVYVTH 195
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 48.1 bits (115), Expect = 2e-06
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
D +W LSGG+KQRVA+AR HRP +LDE
Sbjct: 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 47.7 bits (113), Expect = 2e-06
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQ-KGITDADLTEYLQKVQLGYILNREKG 224
R + V Q+P + + ++ + + Y MI+ K +A + + LQKV L E+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGL-----FEEV 132
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVG--I 282
D + LSGG++QR+ +AR +P+ +LDE TSA+ G + E +E+ +
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 283 TLFTVSH 289
++ V+H
Sbjct: 193 SMIMVTH 199
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 46.6 bits (112), Expect = 2e-06
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS--MYEYCREV---G 281
TV + + LSGG KQR+A+A+ H P+ ILDE TS +D E +E RE+ G
Sbjct: 89 TVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSG--LDPESRREFWELLRELKKEG 145
Query: 282 ITLFTVSH 289
T+ SH
Sbjct: 146 KTILLSSH 153
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 47.1 bits (113), Expect = 2e-06
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFT 286
+ LSGG++QRVA+AR P +LDE SA+ + + E RE+GIT
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186
Query: 287 VSH 289
V+H
Sbjct: 187 VTH 189
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 48.5 bits (116), Expect = 2e-06
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKG-ITDADLTEYLQKVQLG-YILNREKGWDT- 227
Q ++ T+R+ + + + TD +L L++V L ++ G DT
Sbjct: 413 VCAQDAHLFDTTVRENL--------RLARPDATDEELWAALERVGLADWLRALPDGLDTV 464
Query: 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTV 287
+ + LSGGE+QR+A+AR +LDE T + + + E L
Sbjct: 465 LGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE-------DLLAA 517
Query: 288 SHRKS-LW-THHE 298
++ + THH
Sbjct: 518 LSGRTVVLITHHL 530
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 48.1 bits (115), Expect = 2e-06
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
LSGGEKQRVA+AR P ILDE TSA+ E ++ REV G T ++HR S
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 48.0 bits (115), Expect = 3e-06
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 32/121 (26%)
Query: 182 TLRDQVIYP-----HTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV-- 234
T+ + V +P K ++ Q+ + E L+ V L +D D
Sbjct: 99 TVFENVAFPLELAGVPKAEIKQR------VAELLELVGL-------------SDKADRYP 139
Query: 235 --LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVS 288
LSGG+KQRVA+AR + P+ + DE TSA+ + S+ E RE+G+T+ ++
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 289 H 289
H
Sbjct: 200 H 200
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 46.3 bits (111), Expect = 4e-06
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 41/143 (28%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKED----MIQKGITDAD----LTEYLQKVQLGY 217
R K+ V Q P DQ P +E+ + G+ + + + E L+ V L
Sbjct: 74 RRKVGLVFQNP-------DDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG 126
Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ +R LSGG+KQRVA+A + P +LDE T+ +D G
Sbjct: 127 LRDRS---------PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA--GLDPAG-----R 170
Query: 278 REV----------GITLFTVSHR 290
RE+ G T+ V+H
Sbjct: 171 RELLELLKKLKAEGKTIIIVTHD 193
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 46.8 bits (111), Expect = 4e-06
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 188 IYPH--TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAM 245
++PH +E++I+ L++ + +L R + + LSGG++QRVA+
Sbjct: 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152
Query: 246 ARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
AR PQ + DE T+A+ ++ + +E+ GIT V+H
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTH 199
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 47.7 bits (113), Expect = 5e-06
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKE-DMIQKGIT------DADLTEYLQKVQLGYI 218
RG + YVPQ ++ T+R+ +++ E + + I D DL ++G
Sbjct: 678 RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIG-- 735
Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
E+G + +SGG+KQRV+MAR Y I D+ SA+ V +++ C
Sbjct: 736 ---ERGVN--------ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783
Score = 45.7 bits (108), Expect = 2e-05
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK-G 224
R L +PQ P + GT+R I P ++ + DADL E L++ + +++R G
Sbjct: 1309 RRVLSIIPQSPVLFSGTVRFN-IDPFSEHN-------DADLWEALERAHIKDVIDRNPFG 1360
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VG 281
D V++ + S G++Q +++AR R + +LDE T++V V + + RE
Sbjct: 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420
Query: 282 ITLFTVSHR 290
T+ ++HR
Sbjct: 1421 CTMLVIAHR 1429
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 46.3 bits (111), Expect = 5e-06
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 32/143 (22%)
Query: 163 KPPRGKLFYVPQRPY------MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216
K R ++ V Q P MT+G + + H K L V +G
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS----KKEARKEAVLLLLVGVG 133
Query: 217 ---YILNR---EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
+LNR E LSGG++QRVA+AR P+ I DE TSA+ V V+
Sbjct: 134 LPEEVLNRYPHE------------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 271 GS----MYEYCREVGITLFTVSH 289
+ + E+G+TL ++H
Sbjct: 182 AQILDLLKKLQEELGLTLLFITH 204
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 46.0 bits (110), Expect = 7e-06
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVS 288
D LSGG++QRVA+AR +P+ + DE +++ S V + RE GIT+
Sbjct: 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL 202
Query: 289 H 289
H
Sbjct: 203 H 203
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 46.0 bits (109), Expect = 7e-06
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITLFTVSH 289
LSGG++QRVA+AR RP+ + DE TSA+ ++ G + E +T+ V+H
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 46.4 bits (110), Expect = 7e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
LSGG+KQRVA+AR P+ + DE TSA+ S+ E +E+ G+T+ ++H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 44.0 bits (105), Expect = 1e-05
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREVGITLFTVSH 289
LSGGEK R+A+A+L P +LDE T+ +D+E ++ E +E T+ VSH
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTN--HLDLESIEALEEALKEYPGTVILVSH 125
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 45.8 bits (108), Expect = 1e-05
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G +F P P+ L ++ D + YP + +K + E L+KV L W
Sbjct: 93 GMVFQQPN-PFPHL-SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL---------WK 141
Query: 227 TVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCR 278
V D ++ LSGG++QR+ +AR +P+ ++DE TS + + +E + E
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 279 EVGITLFTVSH 289
E+ I + VSH
Sbjct: 202 EIAIVI--VSH 210
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 45.2 bits (108), Expect = 1e-05
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 208 EYLQKVQLGYILNREKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA-- 264
E L+KV L AD + LSGG++QRVA+AR P+ + DE TSA
Sbjct: 118 ELLEKVGL----------ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 265 --VSVDVEGSMYEYCREVGITLFTVSH 289
+ +V M + E G+T+ V+H
Sbjct: 168 PELVGEVLDVMKDLAEE-GMTMVVVTH 193
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 45.4 bits (107), Expect = 1e-05
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 25/143 (17%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-------DLTEYLQKVQLGYI 218
R + Y Q+P++ T+ + + + K +TDA DL + + ++G
Sbjct: 78 RYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG-- 135
Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV-----EGSM 273
E+G + LSGG++QR+ +AR Y LD+ SA+ + + + +
Sbjct: 136 ---ERGIN--------LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 274 YEYCREVGITLFTVSHRKSLWTH 296
++ ++ TL V+H+ H
Sbjct: 185 LKFLQDDKRTLVLVTHKLQYLPH 207
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 45.2 bits (108), Expect = 1e-05
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 29/146 (19%)
Query: 156 LFGGTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTE--- 208
L G P YV Q+ P++T+ D V + +G+ A+ E
Sbjct: 62 LVDGEPVTGPGPDRGYVFQQDALLPWLTV---LDNVALG-----LELQGVPKAEARERAE 113
Query: 209 -YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
L+ V L N + LSGG +QRVA+AR P +LDE SA+
Sbjct: 114 ELLELVGLSGFENA---------YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 268 DVEGSMYEY----CREVGITLFTVSH 289
+ E RE G T+ V+H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 45.4 bits (108), Expect = 1e-05
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 235 LSGGEKQRVAMAR-LFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
LSGG++QRVA+AR L +P +LDE SA+ + M + C E +TL V+H
Sbjct: 130 LSGGQRQRVALARCLVREQP-ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 46.6 bits (110), Expect = 1e-05
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
T+ED +++ A + E+++ + Y N V + LSGG+KQR+A+AR
Sbjct: 1324 TRED-VKRACKFAAIDEFIESLPNKYDTN-------VGPYGKSLSGGQKQRIAIARALLR 1375
Query: 252 RPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFTVSHR 290
P+ +LDE TS++ + +E ++ + + T+ T++HR
Sbjct: 1376 EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
Score = 40.4 bits (94), Expect = 0.001
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
LSGG+KQR+++AR P+ ILDE TS++
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSL 610
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 45.0 bits (107), Expect = 1e-05
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
E L + L ++LNR + LSGGEKQRVA+AR +P+ +LDE SA+
Sbjct: 113 DELLDLLGLDHLLNR---------YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163
Query: 267 VDVEGSMYEYCREV----GITLFTVSH 289
+ + +++ I + V+H
Sbjct: 164 RALRLQLLPELKQIKKNLNIPVIFVTH 190
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 44.7 bits (106), Expect = 1e-05
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 28/128 (21%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
R L +PQ P + GT+R + + +D ++ L+
Sbjct: 81 RSSLTIIPQDPTLFSGTIRSNLDPFDE---------YSDEEIYGALR------------- 118
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGI 282
V++ LS G++Q + +AR RP+ +LDE T+++ + + + RE
Sbjct: 119 ---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS 175
Query: 283 TLFTVSHR 290
T+ T++HR
Sbjct: 176 TILTIAHR 183
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 45.3 bits (108), Expect = 1e-05
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 208 EYLQKVQLG-YILNR---EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
E L+KV L L R E LSGG++QR+ +AR P+ + DE S
Sbjct: 91 ELLEKVGLPEEFLYRYPHE------------LSGGQRQRIGIARALALNPKLIVADEPVS 138
Query: 264 AVSVDVEGS----MYEYCREVGITLFTVSH 289
A+ V V+ + + E+G+T +SH
Sbjct: 139 ALDVSVQAQILNLLKDLQEELGLTYLFISH 168
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 45.4 bits (108), Expect = 1e-05
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
LSGG+KQRVA+A + +P ILDE TS + +V ++ + + GIT+ +++H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 45.5 bits (108), Expect = 2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFT 286
++D +SGG++QRVA+AR +P+ + DE S + ++ SM E RE+ IT
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192
Query: 287 VSHRKS 292
V+H +S
Sbjct: 193 VTHDQS 198
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 45.3 bits (108), Expect = 2e-05
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
LSGG++QRVA+AR ++P+ +LDE SA+ + M R++GIT V+H
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 44.4 bits (105), Expect = 2e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTV 287
LSGG KQRVA+AR RP+ +LDE A+ G++ E E +T+ V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 288 SH 289
+H
Sbjct: 172 TH 173
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 45.3 bits (108), Expect = 2e-05
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
SGG++QR+A+AR +P+ +LDE TSA+ V+ + + R++ G++ +SH
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485
Score = 38.0 bits (89), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
LSGG++QRV +A + P I DE T+A+ V V+ + + + E+G+ + ++H
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 44.7 bits (106), Expect = 2e-05
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
LSGG+KQRVA+A + P ILDE TS + D ++ + R+V IT+ +++H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 44.5 bits (106), Expect = 2e-05
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
LSGG+KQRV +AR + P+ + DE TSA +D E + + + RE+G+T+ ++
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSA--LDPETTQSILALLRDINRELGLTIVLIT 198
Query: 289 H 289
H
Sbjct: 199 H 199
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 45.3 bits (108), Expect = 2e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
+ VLSGGEK R+ +A+L P +LDE T+ + ++ ++ E + T+ VSH
Sbjct: 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSH 494
Score = 39.9 bits (94), Expect = 0.001
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 159 GTVTKPPRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITD--ADLTEYLQKVQ- 214
G VT+P ++ Y+ Q P + T+ D VI + + + + A L + ++
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117
Query: 215 -LGYILNREKGWDTVADWIDV---------------LSGGEKQRVAMARLFYHRPQFAIL 258
L +L GW A + LSGG ++RVA+AR P +L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 259 DECT 262
DE T
Sbjct: 178 DEPT 181
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 45.3 bits (107), Expect = 2e-05
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 22/118 (18%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-----DLTEYL---QKVQLGY 217
+G + YVPQ+ ++ +LR+ +++ + + + +A DL E L + ++G
Sbjct: 698 KGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL-EILPSGDRTEIG- 755
Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
EKG + LSGG+KQRV++AR Y + D+ SAV V ++E
Sbjct: 756 ----EKGVN--------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801
Score = 36.8 bits (85), Expect = 0.013
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
R K+ +PQ P + G+LR + + ++ + + A L ++ + L+ E
Sbjct: 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDK--LDHE-- 1414
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG-------SMYEYC 277
A+ + LS G++Q V +AR + + +LDE T+AV ++ + + +E C
Sbjct: 1415 ---CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC 1471
Query: 278 REVGITLFTVSHR 290
T+ T++HR
Sbjct: 1472 -----TVLTIAHR 1479
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 44.1 bits (105), Expect = 3e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECT 262
LSGGE+QRVA+AR ++P + DE T
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 44.1 bits (105), Expect = 3e-05
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 31/141 (21%)
Query: 166 RGK-LFYVPQ------RPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL--- 215
RGK + + Q P MT+G +V+ H K + K E L+ V +
Sbjct: 86 RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK--GLSKKEAKERAIELLELVGIPDP 143
Query: 216 GYILNR---EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
L E LSGG +QRV +A P+ I DE T+A+ V V+
Sbjct: 144 ERRLKSYPHE------------LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQ 191
Query: 273 ----MYEYCREVGITLFTVSH 289
+ E RE G L ++H
Sbjct: 192 ILDLLKELQREKGTALILITH 212
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 43.6 bits (103), Expect = 4e-05
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 197 IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256
K A + E L+ VQL + +R + + LSGG++QRVA+AR PQ
Sbjct: 102 HPKAKIKARVEELLELVQLEGLGDR---------YPNQLSGGQRQRVALARALAVEPQVL 152
Query: 257 ILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
+LDE A+ V + + R EV +T V+H
Sbjct: 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 44.3 bits (105), Expect = 4e-05
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA----VSVDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRVA+AR P +LDE SA V + + + R +G+T V+H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 44.0 bits (104), Expect = 4e-05
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 228 VADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYC 277
+ D+ID LSGG+KQRVA+A + P+ ILDE TS +D G + +
Sbjct: 133 MLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM--LDPAGKEQILKLIRKLK 190
Query: 278 REVGITLFTVSH 289
++ +T+ +++H
Sbjct: 191 KKNNLTVISITH 202
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 43.7 bits (104), Expect = 5e-05
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA-----VSVDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRVA+AR P+ + DE TSA V +V M + E G+T+ V+H
Sbjct: 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG-EVLDVMKDLAEE-GMTMIIVTH 194
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 43.3 bits (102), Expect = 5e-05
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVS 288
LSGGE+QRVA+AR+ +LDE +A+ + M + E +T+ V+
Sbjct: 127 GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT 186
Query: 289 H 289
H
Sbjct: 187 H 187
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 43.4 bits (103), Expect = 5e-05
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
LSGG++QRVA+AR +LDE SA+ + M + C+E +TL VSH
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 43.6 bits (103), Expect = 5e-05
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
P+MT+ + V + K + + + E L+ VQL +R+ L
Sbjct: 55 PHMTV---EENVAFG-LKMRKVPRAEIKPRVLEALRLVQLEEFADRK---------PHQL 101
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRK 291
SGG++QRVA+AR +P+ +LDE SA+ + M ++GIT V+H +
Sbjct: 102 SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161
Query: 292 S 292
Sbjct: 162 E 162
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 42.7 bits (101), Expect = 7e-05
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E L+KV L + +N LSGGE+QRVA+AR ++P + DE T +
Sbjct: 124 EMLEKVGLEHRINHRPS---------ELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174
Query: 268 DVEGSMYEYCREV----GITLFTVSH 289
+ +++ E+ + V+H
Sbjct: 175 NNAKIIFDLMLELNRELNTSFLVVTH 200
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.2 bits (102), Expect = 7e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREV----GITLFTVS 288
LSGG+KQRVA+A RP+ ILDE TS +D EG + + + + +T+ +++
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSM--LDPEGRLELIKTIKGIRDDYQMTVISIT 198
Query: 289 H 289
H
Sbjct: 199 H 199
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 43.1 bits (102), Expect = 7e-05
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
+ + +KV + L++E LSGG+KQRVA+A + P+ I DE TS
Sbjct: 123 IDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 43.7 bits (103), Expect = 7e-05
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
P+MT+ +Q I K+D + K + + E L V + R+ L
Sbjct: 104 PHMTV----EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQL 150
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSH 289
SGG++QRVA+AR RP+ +LDE A+ + M + VG+T V+H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 42.6 bits (101), Expect = 8e-05
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 32/118 (27%)
Query: 158 GGTVTKPP---RGKLFYVPQRPYMTLGTLRDQVIYPH-TKEDMIQ-----KGITDADLTE 208
G V K P R ++ Y+PQ +YP+ T + + KGI ++
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEF----------GVYPNFTVREFLDYIAWLKGIPSKEVKA 109
Query: 209 Y----LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
L+ V L D I LSGG ++RV +A+ P I+DE T
Sbjct: 110 RVDEVLELVNL---------GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 42.7 bits (101), Expect = 9e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
LSGG++QRVA+AR PQ + DE T+A+ ++ + RE+ GIT V+H
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTH 199
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 42.2 bits (100), Expect = 9e-05
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
+K++ +K E L+KV L L ++ I LSGGE+QRVA+AR
Sbjct: 107 SKKEKREK------KKEALEKVGLNLKLKQK---------IYELSGGEQQRVALARAILK 151
Query: 252 RPQFAILDECTSA 264
P + DE T +
Sbjct: 152 PPPLILADEPTGS 164
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 43.3 bits (102), Expect = 1e-04
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 175 RPYMTLGTLRDQV-IYPHTKEDMIQKGITDA---DLTEYLQKVQLGYIL-----NREKGW 225
+ Y+ G L + +YPH + +T+A +L + L +++ L + EK
Sbjct: 364 KRYI--GILHQEYDLYPHRT---VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVG 281
+ + + D LS GE+ RVA+A++ P+ ILDE T + VDV S+ + E+
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 282 ITLFTVSH 289
T VSH
Sbjct: 479 QTFIIVSH 486
Score = 36.3 bits (84), Expect = 0.018
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFTVSH 289
LSGGEKQRV +AR P + DE T + V ++ E + GI++ SH
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 42.8 bits (101), Expect = 1e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 201 ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
A +T+ L+ VQL ++ +R + LSGG+KQRVA+AR PQ +LDE
Sbjct: 112 AIKAKVTQLLEMVQLAHLADR---------YPAQLSGGQKQRVALARALAVEPQILLLDE 162
Query: 261 CTSAVSVDVEGSMYEYCRE 279
A+ V + + R+
Sbjct: 163 PFGALDAQVRKELRRWLRQ 181
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 42.5 bits (100), Expect = 1e-04
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS-------VDVEGSMYEYCREVGITLFTV 287
LSGGE+QRVA+AR F RP DE T + D+ ++ RE G TL V
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL---LFSLNREHGTTLILV 203
Query: 288 SHRKSL 293
+H L
Sbjct: 204 THDLQL 209
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 42.5 bits (100), Expect = 1e-04
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ V Q+P ++ D V Y + G D + E L++ L W
Sbjct: 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQG--YDGDIDERVEESLRRAAL---------W 167
Query: 226 DTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
D V D +D LSGG++QR+ +AR P+ ++DE SA+
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFT 286
LSGG++QRVA+AR +P+ + DE + S+D E + + + +E GIT+
Sbjct: 146 STLSGGQQQRVAIARALVQQPKIILADEPVA--SLDPESAKKVMDILKDINQEDGITVIV 203
Query: 287 VSH 289
H
Sbjct: 204 NLH 206
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 42.4 bits (100), Expect = 1e-04
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 159 GTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ 214
G P + ++ YV Q P++++ R + Y + ++ I+ + E L
Sbjct: 67 GIFLPPEKRRIGYVFQEARLFPHLSV---RGNLRYGMKRARPSERRISFERVIELLG--- 120
Query: 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY 274
+G++L R G LSGGEKQRVA+ R P+ ++DE +A+ + +
Sbjct: 121 IGHLLGRLPG---------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
Query: 275 EYCR----EVGITLFTVSH 289
Y E GI + VSH
Sbjct: 172 PYLERLHAEFGIPILYVSH 190
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 42.8 bits (101), Expect = 2e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITL 284
D+ LSGGE+QRV +A RP+ I DE T+A+ V V+ + E +E+ + L
Sbjct: 151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL 210
Query: 285 FTVSH 289
++H
Sbjct: 211 LFITH 215
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
SGG++QR+A+AR +P ILDE TS++ V+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQ 461
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 41.7 bits (98), Expect = 2e-04
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRK 291
LSGG++QRVA+AR RP+ + DE TSA+ ++ G + R + T+ V+H
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204
Query: 292 S 292
S
Sbjct: 205 S 205
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 41.5 bits (98), Expect = 2e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECT 262
+ LSGGE+QRVA+AR + P + DE T
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPT 165
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 42.1 bits (99), Expect = 2e-04
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 163 KPPRGKLFYVPQRPYMTLG---TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219
+ R + ++ Q PY +L T+ D ++ P ++ A + L++V L
Sbjct: 397 QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL---- 452
Query: 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYE 275
E W + SGG++QR+ +AR P+ I DE SA+ V + G + +
Sbjct: 453 LPEHAWR----YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508
Query: 276 YCREVGITLFTVSH 289
R+ GI +SH
Sbjct: 509 LQRDFGIAYLFISH 522
Score = 33.3 bits (76), Expect = 0.16
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
LSGG +QRV +A RP I DE T+A+ V ++
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 42.0 bits (100), Expect = 2e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS---AVSVD 268
WD + LSGGE++RVA+ RL +P +LDE T+ A SV
Sbjct: 157 WDAK---VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 41.6 bits (98), Expect = 2e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
LSGG+KQRVA+A + RP+ I DE T+ + +V ++ E ++ GIT+ ++H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 41.5 bits (98), Expect = 2e-04
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGIT 283
D LSGG++QRVA+AR +P + DE +++ S V + +E GIT
Sbjct: 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGIT 198
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 42.4 bits (100), Expect = 2e-04
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKE-DMIQKGITDADLTEYL 210
+L P +V RG + YVPQ ++ T+RD +++ + + ++ I D+T
Sbjct: 666 ELPPRSDASVVI--RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAI---DVTALQ 720
Query: 211 QKVQL--GYILNR--EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
+ L G L E+G + +SGG+KQRV+MAR Y I D+ SA+
Sbjct: 721 HDLDLLPGGDLTEIGERGVN--------ISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Query: 267 VDVEGSMYEYC 277
V +++ C
Sbjct: 773 AHVGRQVFDKC 783
Score = 39.7 bits (93), Expect = 0.002
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE-KG 224
R L +PQ P + GT+R + P + + DADL E L++ L ++ R G
Sbjct: 1312 RKVLGIIPQAPVLFSGTVRFN-LDPFNEHN-------DADLWESLERAHLKDVIRRNSLG 1363
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VG 281
D V++ + S G++Q +++AR R + +LDE T+AV V + + + RE
Sbjct: 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423
Query: 282 ITLFTVSHR 290
T+ ++HR
Sbjct: 1424 CTMLIIAHR 1432
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 41.6 bits (97), Expect = 3e-04
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQF 255
G+ D +L + Q+V+ L + W D +D SGG++QR+ +AR RP+
Sbjct: 113 GVKDKELID--QRVEES--LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKV 168
Query: 256 AILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
+LDE TSA+ S ++E ++ E + T V+H
Sbjct: 169 VLLDEPTSALDPISSSEIEETLMELKHQ--YTFIMVTH 204
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 42.1 bits (99), Expect = 3e-04
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDM--IQKGITDADLTEYLQKVQLGYILNREKGWDTV 228
YVPQ+ ++ T+R +++ +ED + + + L L QLG L E G V
Sbjct: 725 YVPQQAWIMNATVRGNILF-FDEEDAARLADAVRVSQLEADLA--QLGGGLETEIGEKGV 781
Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
LSGG+K RV++AR Y +LD+ SA+ V
Sbjct: 782 N-----LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSH 289
LSGG++QRVA+AR +P+ + DE TSA+ ++ + + + E G+T+ V+H
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 40.6 bits (95), Expect = 3e-04
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSHR 290
LSGG++QRVA+AR +LDE SA+ + M + C E TL V+H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 291 KS 292
S
Sbjct: 189 LS 190
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 41.0 bits (96), Expect = 3e-04
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD V+D +D LSGG++QR+ +AR P+ +LDE TSA+
Sbjct: 169 WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSAL 213
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 41.1 bits (96), Expect = 3e-04
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ V Q+P ++ D V Y + K D + L+K L W
Sbjct: 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAAL---------W 134
Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYC 277
D V D + LSGG++QR+ +AR +P ++DE TSA+ ++ +E M E
Sbjct: 135 DEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194
Query: 278 REVGITLFT 286
+E I + T
Sbjct: 195 KEYTIVIVT 203
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 41.0 bits (96), Expect = 3e-04
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 203 DADLT-EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
DA + L + +L ++ +R+ T LSGGE+QRV +AR P+ +LDE
Sbjct: 114 DAAVVDRALARTELSHLADRD--MST-------LSGGERQRVHVARALAQEPKLLLLDEP 164
Query: 262 TSAVSVDVEGSMYEYCREVGITLFTV 287
T+ + V + RE+ T TV
Sbjct: 165 TNHLDVRAQLETLALVRELAATGVTV 190
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 41.5 bits (98), Expect = 4e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
I +LSGG +Q+VA+AR RP+ ILDE T V V + +Y+
Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 41.3 bits (98), Expect = 4e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
LSGG+KQRVA+AR P+ + DE TSA
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSA 170
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 40.9 bits (96), Expect = 4e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTV 287
+D LSGGE+QR +A L + +LDE TSA+ VDV ++ +E G+T+ V
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204
Query: 288 SH 289
H
Sbjct: 205 LH 206
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 41.1 bits (96), Expect = 4e-04
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 188 IYPHTK-EDMIQKGI-----TDADL----TEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
++PH K ED + G+ AD+ + L+ V LG D A LSG
Sbjct: 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG---------DAAAHLPAQLSG 140
Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
G +QR+A+AR P +LDE SA+ ++ +M E
Sbjct: 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE 178
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 41.8 bits (98), Expect = 4e-04
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
G++ + PQ ++ GT++D +I+ + ++ + A L E + EK
Sbjct: 487 GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFP-------EKDK 539
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + + V E ++E C
Sbjct: 540 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.9 bits (96), Expect = 4e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D + LSGG++QRV +AR+ P+ +LDE TSA+ + +E ++
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 277 CREVGITLFTVSH 289
+ T+ V+
Sbjct: 195 KDDY--TMLLVTR 205
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 40.8 bits (96), Expect = 4e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E L+ VQL ++ +R + LSGG++QRVA+AR P+ +LDE A+
Sbjct: 119 ELLKLVQLDWLADR---------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
Query: 268 DVEGSMYEYCR----EVGITLFTVSH 289
V + + R E+ +T V+H
Sbjct: 170 KVRKELRRWLRRLHDELHVTTVFVTH 195
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 40.2 bits (95), Expect = 4e-04
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD---VEGSMYEYCREVGITLFTVSHRK 291
SGGEK+R + +L P AILDE S + +D + + RE G ++ ++H +
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 292 SL 293
L
Sbjct: 165 RL 166
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 41.1 bits (97), Expect = 5e-04
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS---AVSVD 268
WD AD + LSGGE++RVA+ RL +P +LDE T+ A SV
Sbjct: 155 WD--AD-VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA 198
Score = 29.1 bits (66), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
+ LSGGE+ RV +A+ +LDE T+ +DVE
Sbjct: 441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN--DLDVE 477
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.5 bits (95), Expect = 5e-04
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
V QRP ++ + + + + + K + D + L++ L WD V D
Sbjct: 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL---------WDQVKDD 156
Query: 232 ID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYE 275
+ LSGG++QR+ +AR +P ++DE SA+ ++ +E +M+E
Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 40.0 bits (94), Expect = 5e-04
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL- 293
SGGE+QR+A+AR+ +LDE T V +D R++ +F V K+L
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPT--VGLDPITE-----RQLLSLIFEVLKDKTLI 151
Query: 294 W-THH 297
W THH
Sbjct: 152 WITHH 156
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.3 bits (94), Expect = 5e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D + LSGG++QRV +AR+ +P +LDE TSA+ S +E + E
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 277 CREVGITLFT 286
+ I L T
Sbjct: 195 RDQYTIILVT 204
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 40.8 bits (96), Expect = 6e-04
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 215 LGYILNREKGWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM 273
+ +I + G DTV V LSGG++QR+A+AR ILDE TSA+ + E ++
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 274 YEYCREV--GITLFTVSHRKS 292
E+ T ++HR S
Sbjct: 520 QAALDELQKNRTSLVIAHRLS 540
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.9 bits (96), Expect = 6e-04
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
D V + SGGEK R+ +A + + RP +LDE T+ + +D+ ++ E + L
Sbjct: 422 DKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALV 481
Query: 286 TVSHRKSL 293
VSH + L
Sbjct: 482 VVSHDRHL 489
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 40.1 bits (94), Expect = 6e-04
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSH 289
LSGG++QRVA+AR P+ + DE TSA+ ++ G + + + E G T+ V+H
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 39.6 bits (93), Expect = 7e-04
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 25/105 (23%)
Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
A + E L +V L + + G LS G+++RVA+ARL+ ILD
Sbjct: 105 SGNAATIWEALAQVGLAGLEDLPVGQ---------LSAGQQRRVALARLWLSPAPLWILD 155
Query: 260 ECTSAVSVDVEGS------MYEYCREVGITLFTVSHRKSLWTHHE 298
E +A +D EG M + + GI L T TH
Sbjct: 156 EPFTA--LDKEGVALLTALMAAHAAQGGIVLLT--------THQP 190
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 40.6 bits (96), Expect = 7e-04
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
LS ++Q V +AR + ILDE T+A++V +++ R + G+ + +SHR
Sbjct: 146 LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204
Score = 38.6 bits (91), Expect = 0.003
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 210 LQKVQLGYILNREKGWDTVADWID--------------VLSGGEKQRVAMARLFYHRPQF 255
L++ +++R K +I LSGG +Q+V +AR P+
Sbjct: 363 LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 256 AILDECTSAVSVDV 269
ILDE T +DV
Sbjct: 423 LILDEPT--RGIDV 434
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 40.8 bits (96), Expect = 7e-04
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R ++ VPQ P + ++ + + Y P ++ ++ A E++ + GY
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGY------ 466
Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
DT + + LSGG++QR+A+AR +LDE TSA+ + E
Sbjct: 467 --DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 40.0 bits (94), Expect = 7e-04
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQ 254
K D + E L+K L WD V D + LSGG++QR+ +AR P+
Sbjct: 114 KKELDEIVEESLKKAAL---------WDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE 164
Query: 255 FAILDECTSA 264
+LDE TSA
Sbjct: 165 VLLLDEPTSA 174
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 40.0 bits (93), Expect = 8e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRK 291
LSGG++QRV++AR P+ + DE TSA+ ++ G + + E G T+ V+H
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 292 SLWTH 296
H
Sbjct: 213 GFARH 217
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 39.6 bits (93), Expect = 8e-04
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 182 TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQ 241
+ DQ++Y + + ++ + E+L++++L N+ ++ LS G +Q
Sbjct: 86 KVIDQLVYLAQLKGLKKEEAR-RRIDEWLERLELSEYANKR---------VEELSKGNQQ 135
Query: 242 RVAMARLFYHRPQFAILDECTSA---VSVDVEGSMYEYCREVGITLFTVSHR 290
+V H P+ ILDE S V+V++ + G T+ +H+
Sbjct: 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 40.5 bits (95), Expect = 8e-04
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
LS G+KQ +A+AR+ PQ ILDE T+ + E ++ + V TL ++HR S
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS 536
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 40.1 bits (93), Expect = 8e-04
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ V Q+P ++ D V Y + + I + + + L+ L W
Sbjct: 162 RTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL---------W 212
Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYC 277
D V D +D LSGG++QR+ +AR P+ ++DE TSA+ + +E + E
Sbjct: 213 DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK 272
Query: 278 REVGITLFTVS 288
++ I + T S
Sbjct: 273 KKYSIIIVTHS 283
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 39.5 bits (92), Expect = 9e-04
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTS 263
L+K QL WD V D +D LSGG++QR+ +AR +P+ + DE T+
Sbjct: 125 WALEKAQL---------WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 264 AV----SVDVEGSMYEYCREVGITLFT 286
+ + +E E +++ I L T
Sbjct: 176 NLDPENTAKIESLFLELKKDMTIVLVT 202
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 40.2 bits (94), Expect = 0.001
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSHR 290
LS G+K+R +A+L RP ++DE + +V V + E RE GITL V+HR
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 291 KSL 293
+
Sbjct: 568 PEV 570
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 39.6 bits (92), Expect = 0.001
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 217 YILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
L R W+ V D + LSGG++QR+ +AR +P ++DE SA+
Sbjct: 140 DSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199
Query: 273 MYEYCREV--GITLFTVSH 289
+ E C E+ T+ V+H
Sbjct: 200 VEELCLELKEQYTIIMVTH 218
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 39.4 bits (92), Expect = 0.001
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D + LSGG++QR+ +AR P ++DE TSA+ + +E M E
Sbjct: 132 WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191
Query: 277 CREVGITLFTVS 288
+ I + T S
Sbjct: 192 KKNYTIVIVTHS 203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 40.1 bits (94), Expect = 0.001
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKE-DM--IQKGITDADLTEYLQKVQLGYILNRE 222
R ++ V Q + T+ + + Y T++ D I++ + A +++ K+ LG L+
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG--LDTP 462
Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
G + V +LSGG++QR+A+AR ILDE TSA+ + E + +
Sbjct: 463 IGENGV-----LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517
Query: 281 GITLFTVSHRKS 292
G T ++HR S
Sbjct: 518 GRTTLVIAHRLS 529
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 38.9 bits (91), Expect = 0.001
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDM----IQKGITDADLT---- 207
L G R L QR + DQ+ +D+ + G+++A++
Sbjct: 50 LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR 109
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E L V + R LSGGEK+RVA+A RP +LDE T+ +
Sbjct: 110 EALTAVGASGLRERP---------THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG--L 158
Query: 268 DVEG-----SMYEYCREVGITLFTVSH 289
D G ++ R G+T+ +H
Sbjct: 159 DPAGREQMLAILRRLRAEGMTVVISTH 185
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 39.7 bits (92), Expect = 0.001
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVG----ITLFTVSH 289
LSGG+KQRVA+A + RP+ ILDE TS + + E+ +T+ +++H
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
++++K E ++++ L +L+R+ + LSGGE QRVA+A
Sbjct: 180 KVGELLKKVDERGKFDEVVERLGLENVLDRD---------VSELSGGELQRVAIAAALLR 230
Query: 252 RPQFAILDECTS 263
DE +S
Sbjct: 231 DADVYFFDEPSS 242
Score = 35.0 bits (81), Expect = 0.045
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 28/96 (29%)
Query: 161 VTKPPRG-----KLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ---- 211
V KP G K+ Y PQ Y++ Y T ED+++ I A + Y +
Sbjct: 390 VIKPDEGSEEDLKVSYKPQ--YIS-------PDYDGTVEDLLRSAIRSAFGSSYFKTEIV 440
Query: 212 -KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA 246
+ L +L R +D LSGGE QRVA+A
Sbjct: 441 KPLNLEDLLERP---------VDELSGGELQRVAIA 467
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 39.6 bits (92), Expect = 0.001
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 198 QKGITDADLTEYLQKVQLGYILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRP 253
+K + D + E L K L WD V D + LSGG++QR+ +AR +P
Sbjct: 133 RKSVLDEIVEESLTKAAL---------WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP 183
Query: 254 QFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSHRKSL 293
+LDE SA+ + +E + E E I + T + +++L
Sbjct: 184 AVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQAL 227
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 39.3 bits (92), Expect = 0.001
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 9/61 (14%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
LSGG+K+RVA+A + +P+ +LDE TS +D G+ +Y+ +E GIT+ +
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSG--LDPMGASQIMKLLYDLNKE-GITIIIST 194
Query: 289 H 289
H
Sbjct: 195 H 195
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 39.2 bits (91), Expect = 0.001
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 23/97 (23%)
Query: 213 VQLGYILNREKG---------------WDTVADWIDV----LSGGEKQRVAMARLFYHRP 253
V G LNR KG WD V D + V LSGG++QR+ +AR P
Sbjct: 109 VAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168
Query: 254 QFAILDECTSAV----SVDVEGSMYEYCREVGITLFT 286
+ +LDE SA+ + VE M E ++ I L T
Sbjct: 169 EVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVT 205
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHR 290
LSGG++QRVA+AR +P+ +LDE S + + M +G T V+H
Sbjct: 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 39.5 bits (92), Expect = 0.001
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
G++ + Q ++ GT+++ +I+ + ++ K + A L E + K EK
Sbjct: 98 GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFP-------EKDN 150
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+ + LSGG++ R+++AR Y +LD + V E ++E C
Sbjct: 151 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 38.9 bits (91), Expect = 0.001
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
S G +Q+VA+AR H P +LDE T+ + V ++ E+ R++ G + +H
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 39.0 bits (92), Expect = 0.002
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 235 LSGGEKQRVAMARLF------YHRPQFAILDECTSA 264
LSGGE+QRV +AR+ P++ +LDE TSA
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 38.7 bits (91), Expect = 0.002
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLF-YHRPQFAI 257
G + D+ L+ V L + + G LS G+K+RVA+ARL +RP + I
Sbjct: 101 LGGEELDIAAALEAVGLAPLAHLPFG---------YLSAGQKRRVALARLLVSNRPIW-I 150
Query: 258 LDECTSA 264
LDE T+A
Sbjct: 151 LDEPTAA 157
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 38.9 bits (91), Expect = 0.002
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 156 LFGGTVTKPPRGKLFYVPQ-RPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ 214
GG +++ + ++ Y+P+ R T+ DQ+ Y + M + I + +
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI----------QKK 110
Query: 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA---VSVDVEG 271
L L R + I LS G +Q++ H P+ ILDE S V+V++
Sbjct: 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 272 SMYEYCREVGITLFTVSHR 290
+E G T+ SHR
Sbjct: 171 DAIFELKEEGATIIFSSHR 189
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
SGG++QR+A+AR P + DE SA+ V V
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 38.7 bits (90), Expect = 0.002
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD + D + LSGG++QR+ +AR P ++DE TSA+
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 38.0 bits (89), Expect = 0.002
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 25/122 (20%)
Query: 176 PYMTLGTLRDQVIYP----HTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
P+MT+ D + + +D I + + + + +Q+ ++L+R+
Sbjct: 85 PHMTV---YDNIAFGLKLRKVPKDEIDERVREV-----AELLQIEHLLDRKP-------- 128
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTV 287
LSGG++QRVA+ R P+ ++DE S + V + + + +G T V
Sbjct: 129 -KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187
Query: 288 SH 289
+H
Sbjct: 188 TH 189
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 39.0 bits (92), Expect = 0.003
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD 230
YV P + G +R+ + K D ++G D E ++++ L IL+R+
Sbjct: 168 YVDLIPKVFKGKVRELL----KKVD--ERGKLD----EVVERLGLENILDRD-------- 209
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
I LSGGE QRVA+A F DE TS
Sbjct: 210 -ISELSGGELQRVAIAAALLRDADFYFFDEPTS 241
Score = 32.1 bits (74), Expect = 0.42
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA 246
+E ++ +QL +L++ + LSGGE QRVA+A
Sbjct: 435 SEIIKPLQLERLLDKN---------VKDLSGGELQRVAIA 465
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 38.5 bits (90), Expect = 0.003
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSH 289
LSGGEKQRVA+ R P+ ++DE +++ + + + Y E+ I + VSH
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 37.9 bits (89), Expect = 0.003
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCREVGITLFTVSH 289
LS G+++RVA+ARL+ R ILDE +A+ +E + ++ + G+ + T
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT--- 185
Query: 290 RKSLWTHHE 298
TH +
Sbjct: 186 -----THQD 189
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 37.9 bits (88), Expect = 0.003
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D ++ LSGG++QR+ +AR +P+ ++DE T+ + + +E ++E
Sbjct: 136 WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195
Query: 277 CREVGITLFTVS 288
+E I L T S
Sbjct: 196 KKEYTIVLVTHS 207
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 37.8 bits (88), Expect = 0.003
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
A + E +++QL L+R G S G KQ+VA+AR H P +LDE
Sbjct: 110 IKARIAELSKRLQLLEYLDRRVG---------EFSTGMKQKVAIARALVHDPSILVLDEP 160
Query: 262 TSAVSVDVEGSMYEY---CREVGITLFTVSH 289
TS + + +++ + G + SH
Sbjct: 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.0 bits (88), Expect = 0.003
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R K+ V Q+P ++ D V + + K D + E L+K L W
Sbjct: 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL---------W 133
Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
D V ++ LSGG++QR+ +AR P+ +LDE TSA+
Sbjct: 134 DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSAL 177
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV---SVD-VEGSMYEYCREVGITLFTVSH 289
LS G+++RVA+ARL ILDE T+A+ V +M +C G+ + T
Sbjct: 126 LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 37.9 bits (88), Expect = 0.003
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
LSGGE+QRVA+AR + P+ + DE T + S+++ E+ G V+H
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
Query: 291 KSL 293
L
Sbjct: 206 LQL 208
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 38.2 bits (88), Expect = 0.003
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV 280
WD V D + LSGG++Q + +AR P+ +LDE TSA+ + E+ R +
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 281 G--ITLFTVSH 289
+T+ V+H
Sbjct: 210 ADRLTVIIVTH 220
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 38.1 bits (89), Expect = 0.004
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCREVGITLFTVSH 289
LSGG+K+RVA+A + P+ ILDE T+ + ++ + E +E +T+ VSH
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 37.5 bits (87), Expect = 0.004
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVS 288
LSGG++ RVA+ R +P+ +LDE S + V + ++ R GI V+
Sbjct: 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVT 192
Query: 289 H 289
H
Sbjct: 193 H 193
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 37.9 bits (88), Expect = 0.004
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
LSGGEK+RVA+A + PQ +LDE T+ +D +G + + G+T+ +
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAG--LDPQGVKELIDFLNDLPETYGMTVIFST 195
Query: 289 HRKSL 293
H+ L
Sbjct: 196 HQLDL 200
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 37.7 bits (87), Expect = 0.004
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 197 IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHR 252
I + ADL E ++ G L W V D ++ LSGG++QR+ +AR +
Sbjct: 114 ISAKLPQADLDEIVESALKGAAL-----WQEVKDKLNKSALGLSGGQQQRLCIARALAIK 168
Query: 253 PQFAILDECTSAV----SVDVEGSMYEYCREVGITLFT 286
P+ ++DE SA+ ++ VE ++ E+ I + T
Sbjct: 169 PKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 37.0 bits (86), Expect = 0.005
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFTVSHR 290
LS G+++R+A+ARL+ R ILDE T+A+ + G + + GI L T
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLT---- 183
Query: 291 KSLWTHHE 298
TH +
Sbjct: 184 ----THQD 187
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 37.2 bits (86), Expect = 0.005
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT----SAVSVDVEGSMYEYCREVGITLFTVSHR 290
LSGGE+QRV +AR ++P + DE T A+S + E+ R VG+T+ +H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHD 196
Query: 291 KSL 293
L
Sbjct: 197 IGL 199
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 37.3 bits (86), Expect = 0.005
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 225 WDTVADWIDVL----SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV 280
WD V D + L SGG++QR+ +AR P+ + DE TSA+ S+ E ++
Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL 207
Query: 281 --GITLFTVSH 289
+T+ V+H
Sbjct: 208 KNKVTILIVTH 218
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 37.3 bits (86), Expect = 0.005
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R K+ V Q P L ++ D + Y K D + + L+K L W
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSAL---------W 137
Query: 226 DTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
+ V D ++ LSGG++QR+ +AR P ++DE TSA+ G + E
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE 191
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 37.8 bits (88), Expect = 0.005
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 218 ILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY 276
IL +G+DT V + +LSGG+KQR+++AR + ILD+ SAV E +
Sbjct: 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493
Query: 277 CREVGI--TLFTVSHRKSLWT 295
R+ G T+ +HR S T
Sbjct: 494 LRQWGEGRTVIISAHRLSALT 514
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.3 bits (86), Expect = 0.005
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
G +F P P+ + ++ D VI + + + D + L++V L WD
Sbjct: 88 GMVFQKPN-PFPAM-SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVAL---------WD 136
Query: 227 TVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
V D + LSGG++QR+ +AR +P+ ++DE SA+
Sbjct: 137 EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASAL 179
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 37.5 bits (88), Expect = 0.005
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGGEKQRVA+ R P+ ++DE
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDE 154
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 37.9 bits (88), Expect = 0.006
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV------GITLF 285
I LSGG +Q+ +A++ P+ ILDE T V V G+ YE + + G+ +
Sbjct: 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV---GAKYEIYKLINQLAQEGVAII 457
Query: 286 TVS 288
VS
Sbjct: 458 VVS 460
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 37.1 bits (87), Expect = 0.006
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
V Q+P ++ D V Y + I+ D + L+K L WD V D
Sbjct: 93 VFQKPNPFPMSIYDNVAYGL-RLHGIKDKELDEIVESSLKKAAL---------WDEVKDR 142
Query: 232 ID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGIT 283
+ LSGG++QR+ +AR +P+ ++DE TSA+ ++ +E + E ++ I
Sbjct: 143 LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIV 202
Query: 284 LFTVSH 289
+ V+H
Sbjct: 203 I--VTH 206
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 37.6 bits (88), Expect = 0.006
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
LSGG++QR+ +AR +P+ + DE TSA
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSA 618
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 37.0 bits (86), Expect = 0.006
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT 262
LSGGE+QRVA+AR + P I DE T
Sbjct: 137 LSGGEQQRVAIARAIVNSPTILIADEPT 164
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 37.2 bits (86), Expect = 0.006
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD V D + LSGG++QR+ +AR P ++DE TSA+
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSAL 186
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 37.3 bits (86), Expect = 0.006
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 167 GKLFYVPQRPY---MTLGTLRDQVIYPHTKEDMIQKGITD-----ADLTEYLQKVQLGYI 218
G++ + Q Y + L LR QV H K ++ + D + + K+++ I
Sbjct: 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDI 126
Query: 219 ----LNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTS----AVS 266
L WD + I LSGG++QR+ +AR +P+ ++DE S
Sbjct: 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 267 VDVEGSMYEYCREVGITLFTVSH 289
+ VE + +T+ VSH
Sbjct: 187 MKVESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 36.9 bits (86), Expect = 0.006
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 16/69 (23%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM------YEYCREVGITLFTVS 288
L+GG ++RV +AR HRP +LDE T V +D R+ G+++
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPT--VGLDPASRAAITAHVRALARDQGLSV---- 186
Query: 289 HRKSLWTHH 297
LW H
Sbjct: 187 ----LWATH 191
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 36.9 bits (86), Expect = 0.007
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 225 WDTVADWI----DVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
W+ V D + LSGG++QR+ +AR RP+ +LDE SA
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 37.0 bits (86), Expect = 0.007
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 23/108 (21%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY-PHTKEDMIQKGITDADLTEYLQKVQLGYILNRE-K 223
R ++ V Q+P ++ D V Y P T GI D K +L I+ + K
Sbjct: 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTH------GIKD--------KKKLDEIVEKSLK 128
Query: 224 G---WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
G WD V D + LSGG++QR+ +AR P+ ++DE TSA
Sbjct: 129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 36.9 bits (85), Expect = 0.007
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD V D +D LSGG++QR+ +AR P+ ++DE SA+
Sbjct: 133 WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 36.9 bits (85), Expect = 0.007
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD V D + LSGG++QR+ +AR P+ ++DE TSA+
Sbjct: 135 WDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 36.9 bits (86), Expect = 0.008
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
LSGG++QRVA+AR P+ +LDE A+ V + + R++ G+T V+H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 37.0 bits (86), Expect = 0.008
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
L E + +++L ++L+R ID LSGGE QRVA+A F DE +S
Sbjct: 120 LDELVDQLELRHVLDRN---------IDQLSGGELQRVAIAAALARDADFYFFDEPSS 168
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 36.7 bits (85), Expect = 0.009
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSH 289
LSGG +QRV +AR PQ +LDE A+ M E +E G + ++H
Sbjct: 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITH 191
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 36.7 bits (85), Expect = 0.009
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI----LNR 221
R ++ V Q P ++R+ + Y K I G+ A L K + L +
Sbjct: 125 RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL-ARLLGRDDKDAEDELVERSLRQ 183
Query: 222 EKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD V D +D LSGG++QR+ +AR P+ ++DE SA+
Sbjct: 184 AALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 37.0 bits (86), Expect = 0.009
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITLFTVSHRK 291
SGG+ QR+ +AR P+ I DE SA+ V ++ + + RE+G++L ++H
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
Query: 292 SLWTH 296
++ H
Sbjct: 223 AVVKH 227
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 36.4 bits (84), Expect = 0.009
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
LSGGE++RV +AR P+F +LDE + V +D++ + E+ R+ G+ + H
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDH 195
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 36.5 bits (84), Expect = 0.009
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D + LSGG++QR+ +AR P ++DE SA+ + VE ++E
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 277 CREVGITLFT 286
++ I + T
Sbjct: 193 KKDYTIVIVT 202
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 36.6 bits (85), Expect = 0.011
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E L+ +LG +R G SGG ++R+ +A H+P LDE T+ +
Sbjct: 107 ELLELFELGEAADRPVG---------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157
Query: 268 DVEGSMYEYCR---EVGITLFTVSH 289
++++Y R E G+T+ +H
Sbjct: 158 RTRRAIWDYIRALKEEGVTILLTTH 182
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 36.4 bits (85), Expect = 0.011
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD---VEGSMYEYCREVGITLFTVSHRK 291
SGGEK+R + +L P+ AILDE S + +D + RE G + ++H +
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 292 SL 293
L
Sbjct: 205 RL 206
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 36.3 bits (85), Expect = 0.011
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGGE+Q +A+AR RP+ +LDE
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDE 162
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 36.4 bits (85), Expect = 0.011
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGGE++RV +AR P+F +LDE
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDE 165
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 36.2 bits (83), Expect = 0.012
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D + LSGG++QR+ +AR+ P+ ++DE SA+ ++ +E M E
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
Query: 277 CREVGITLFT----VSHRKSLWT 295
+ I + T + R S WT
Sbjct: 194 KQNYTIAIVTHNMQQAARASDWT 216
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 36.4 bits (84), Expect = 0.013
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
Query: 209 YLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
YL K+ L +++ LSGG+K+RVA+A + +P+ I DE T+
Sbjct: 159 YLNKMGLDD------------SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG 206
Query: 265 VSVDVEGSMYEYCREV---GITLFTVSH 289
+ E M + + T+F ++H
Sbjct: 207 LDPKGEHEMMQLILDAKANNKTVFVITH 234
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 35.9 bits (84), Expect = 0.013
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGGE+Q +A+AR RP+ +LDE
Sbjct: 133 LSGGEQQMLAIARALMSRPKLLLLDE 158
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 36.0 bits (83), Expect = 0.014
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVS 288
I LSGG+K+RV +AR + Q +LDE + V V E + RE+ G T+ +
Sbjct: 140 IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVST 199
Query: 289 H 289
H
Sbjct: 200 H 200
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 36.8 bits (85), Expect = 0.014
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF-----TVSH 289
LSGG+K RVA A++ + +P +LDE ++ + +D ++ + G+ LF VSH
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ-----GLVLFQGGVLMVSH 682
Query: 290 RKSL 293
+ L
Sbjct: 683 DEHL 686
Score = 30.6 bits (69), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
SGG + R+A+AR + P +LDE T+ + + + Y + T VSH
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSH 399
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 36.1 bits (84), Expect = 0.015
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM--YEYCREV-----GITLFTV 287
LS GE++RV +AR P+ ILDE +D+ E+ L V
Sbjct: 172 LSQGEQRRVLIARALVKDPELLILDEPAQ--GLDLIAREQLLNRLEELAASPGAPALLFV 229
Query: 288 SHR 290
+H
Sbjct: 230 THH 232
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 35.7 bits (83), Expect = 0.015
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS 263
LSGG+KQR+A+A I DE TS
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTS 155
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.6 bits (82), Expect = 0.018
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R K+ V QRP ++ + V Y K D + + L+ L W
Sbjct: 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL---------W 136
Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
D V D + LSGG++QR+ +AR P+ ++DE SA+
Sbjct: 137 DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 35.6 bits (82), Expect = 0.020
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 32/148 (21%)
Query: 158 GGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD-------------A 204
G + YVPQR +P + + G T A
Sbjct: 40 AGASPGKGWRHIGYVPQRHEFAWD-------FPISVAHTVMSGRTGHIGWLRRPCVADFA 92
Query: 205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
+ + L++V L + +R G LSGG++QRV +AR RP +LDE +
Sbjct: 93 AVRDALRRVGLTELADRPVG---------ELSGGQRQRVLVARALATRPSVLLLDEPFTG 143
Query: 265 V---SVDVEGSMYEYCREVGITLFTVSH 289
+ + ++ ++ G + +H
Sbjct: 144 LDMPTQELLTELFIELAGAGTAILMTTH 171
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 35.8 bits (83), Expect = 0.021
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS-----MYEYCREVGITLFTVSH 289
LSGG+K+RVA+A + P F + DE T+ +D +G +++ + G T+ V+H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAG--LDPQGVKEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 35.3 bits (82), Expect = 0.022
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYC---REVGITLFTVSH 289
S G KQR+ +A P ILDE T+ +D +G + E R+ GIT+ SH
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNG--LDPDGIKELRELILSLRDQGITVLISSH 184
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 35.1 bits (81), Expect = 0.025
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSA 264
SGGE+QRV +AR F +LDE T++
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTAS 179
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 35.1 bits (81), Expect = 0.025
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
W+ V D +D LSGG++QR+ +AR P ++DE SA+
Sbjct: 135 WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSAL 179
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 35.2 bits (81), Expect = 0.026
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
SGG +QR+ +AR RP+ +DE T + V V+ + + R ++G+ + V+H
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 35.1 bits (81), Expect = 0.027
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QRV +AR PQ +LDE
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDE 154
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 35.7 bits (83), Expect = 0.028
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
LSGG +Q+ +A+ P+ ILDE T + V G+ YE
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV---GAKYE 443
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 35.5 bits (82), Expect = 0.028
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 236 SGGEKQRV--AMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITLFTVSH 289
SGG +QRV AMA L RP+ I DE T+A+ V V+ + E RE + ++H
Sbjct: 163 SGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.0 bits (81), Expect = 0.028
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
LSGG+ QRV +AR P+ ILDE AVS
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDE---AVS 180
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 35.4 bits (82), Expect = 0.028
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV 280
LSGG +Q+V +A+ PQ I+DE T V V +Y+ R +
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 35.2 bits (81), Expect = 0.029
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD D ++ LSGG++QR+ +AR P+ ++DE SA+ ++ +E +M+E
Sbjct: 141 WDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
Query: 277 CREVGITLFT 286
+ I + T
Sbjct: 201 KKNFTIVIVT 210
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 35.0 bits (80), Expect = 0.031
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD +D + LSGG++QR+ +AR +P+ + DE TSA+
Sbjct: 141 WDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 35.3 bits (82), Expect = 0.031
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
LSGGE+ R+ +ARLF ILDE T+ +DVE
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTN--DLDVE 474
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 35.0 bits (81), Expect = 0.031
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
LSGG++QRV +AR P ++DE A+
Sbjct: 136 LSGGQQQRVGVARALAADPPILLMDEPFGAL 166
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 34.4 bits (80), Expect = 0.035
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDE 260
+ +LSGGEK A+A LF RP F +LDE
Sbjct: 111 LSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 34.8 bits (80), Expect = 0.037
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
LSGG+ QR+ +AR +P+ +LDE S + + ++ + E R++ G ++H
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210
Query: 291 KSL 293
L
Sbjct: 211 LRL 213
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 34.6 bits (80), Expect = 0.041
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
WD V D + LSGG++QR+ +AR P+ +LDE TSA
Sbjct: 155 WDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA 198
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 34.7 bits (79), Expect = 0.044
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM---YEYCREVGITLFTVSH 289
LSGG+ +RVA+A + P+ +LDE T+ + M +E + G T+ V+H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 34.7 bits (80), Expect = 0.044
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
I LS G +QRV +A+ H P+ ILDE T+
Sbjct: 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 34.4 bits (79), Expect = 0.045
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITLFT 286
+ +L+ G+KQRVA+AR RP+ I DE +++ + + M E + GI+
Sbjct: 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205
Query: 287 VSHRKSLWTH 296
V+ + H
Sbjct: 206 VTQHIGMIKH 215
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 34.6 bits (80), Expect = 0.046
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 234 VLSGGEKQRVAMARLFYHRPQ------FAILDECTSA 264
LSGGE+QRV +AR+ + LDE TSA
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 33.9 bits (79), Expect = 0.049
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
LSGG +Q+V +AR P+ ILDE T VDV
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPT--RGVDV 137
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 34.2 bits (79), Expect = 0.051
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS 263
+SGGE++RV++A P+ ILDE TS
Sbjct: 144 ISGGERRRVSIAVQLLWDPKVLILDEPTS 172
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 34.4 bits (79), Expect = 0.053
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
LS G+K+RVA+A + P+ +LDE T+ +D G + E +E+G+T+ +
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAG--LDPMGVSEIMKLLVEMQKELGLTIIIAT 199
Query: 289 H 289
H
Sbjct: 200 H 200
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 34.9 bits (80), Expect = 0.057
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDE 260
+D LSGGEK VA+A +F +RP F +LDE
Sbjct: 1076 LDNLSGGEKTLVALALIFAIQKYRPAPFYLLDE 1108
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 34.4 bits (79), Expect = 0.058
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
+ LSGGE+QRV +AR +LDE T+ S+D+
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTA--SLDI 172
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 34.4 bits (79), Expect = 0.060
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
LSGG K+R+ +AR + PQ ILDE T+ + ++E R + G T+ +H
Sbjct: 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 34.1 bits (79), Expect = 0.061
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 232 IDVLSGGEKQRVAMARLF----YHRPQFAILDECTSA 264
+D LSGGEK A+A LF Y F +LDE +A
Sbjct: 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAA 189
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 34.0 bits (78), Expect = 0.062
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
WD V D + LSGG++QR+ +AR +P+ ++DE SA+ ++ +E M+E
Sbjct: 138 WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197
Query: 277 CREVGITLFT 286
+ I + T
Sbjct: 198 KEQYTIIIVT 207
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 34.2 bits (79), Expect = 0.062
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
QL ++L+R+ LSGG++QRVA+ R P +LDE
Sbjct: 122 QLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDE 159
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 33.8 bits (78), Expect = 0.070
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
E L+ V L GW+ + D LSGG +QRV +AR P ++DE SA+
Sbjct: 142 AEALELVGLE-------GWEHK--YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
Query: 267 VDVEGSMYEYC----REVGITLFTVSH 289
+ M + E+ T+ ++H
Sbjct: 193 PLIRREMQDELLRLQAELQKTIVFITH 219
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 33.9 bits (78), Expect = 0.070
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
LSGG QRV +A RP+ I DE T+A+ V ++ + E
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 33.9 bits (78), Expect = 0.071
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
SGG ++R+ +AR HRP+ LDE T + ++EY E G+T+ +H
Sbjct: 133 SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 33.9 bits (78), Expect = 0.072
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 235 LSGGEKQRV--AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVS 288
LSGG QRV A+A L P F I DE T+ + V + + + RE+ G + ++
Sbjct: 126 LSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 289 H 289
H
Sbjct: 184 H 184
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 34.1 bits (79), Expect = 0.073
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS---VDVEGSMYEYCREVGITLFTVSHR 290
LS GE+QRV + + Y + ILDE T+ ++ D + G T+ ++H+
Sbjct: 141 LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 33.6 bits (78), Expect = 0.075
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 235 LSGGEKQRVAMAR--------LFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFT 286
LSGG K+RVA+AR L Y P A LD S V D+ + +E+G+T
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEP-TAGLDPIASGVIDDL---IRSLKKELGLTSIM 192
Query: 287 VSH 289
V+H
Sbjct: 193 VTH 195
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 33.8 bits (77), Expect = 0.075
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTV 287
+D LSGG++QR +A + +LDE T+ + +D+ + E RE G TL V
Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV 200
Query: 288 SH 289
H
Sbjct: 201 LH 202
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 33.7 bits (78), Expect = 0.077
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGGE++RV +AR P+F +LDE
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDE 159
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 33.6 bits (77), Expect = 0.078
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
WD V D + LSGG++QR+ +AR P+ ++DE SA+
Sbjct: 136 WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASAL 180
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 33.6 bits (78), Expect = 0.086
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
LS G+++R+ +AR P+ +LDE + ++ + + E RE+ GIT+ V H
Sbjct: 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 33.7 bits (78), Expect = 0.087
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 235 LSGGEKQRVAMAR--------LFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFT 286
LSGG ++RVA+AR LF P + LD ++ V ++ + E +G+T+
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEP-TSGLDPISAGVIDEL---IRELNDALGLTVIM 201
Query: 287 VSH 289
V+H
Sbjct: 202 VTH 204
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 33.4 bits (77), Expect = 0.094
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
SGGEK+R + ++ P+ AILDE S + +D
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 33.3 bits (77), Expect = 0.099
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT 262
LSGG++Q++A+AR RP+ +LDE T
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPT 159
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 33.6 bits (77), Expect = 0.10
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG-----SMYEYCREVGITLFTVSH 289
LSGG+ +RVA+A + P+ +LDE T+ +D +G ++++ + G+T+ V+H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAG--LDPKGRKELMTLFKKLHQSGMTIVLVTH 203
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 33.9 bits (78), Expect = 0.10
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
LSGG +QRV +AR + P ++DE SA
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSA 194
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 33.7 bits (77), Expect = 0.10
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVS 288
D LSGG +QRV +AR P ++DE SA+ + SM + + T+ ++
Sbjct: 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 289 H 289
H
Sbjct: 188 H 188
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 32.9 bits (75), Expect = 0.12
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
T E+ + G A+ ++ ++++ Y L + + +SGGE+Q +A+ R
Sbjct: 96 TVEENLAMGGFFAERDQFQERIKWVYEL-FPRLHERRIQRAGTMSGGEQQMLAIGRALMS 154
Query: 252 RPQFAILDECTSAVSVDVEGSMY---EYCREVGITLFTV 287
+P+ +LDE + ++ + ++ E RE G+T+F V
Sbjct: 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 32.3 bits (74), Expect = 0.13
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 235 LSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTV 287
LSGGEK+ A+A + ILDE + ++ E E G + +
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 288 SHR 290
+H
Sbjct: 138 THL 140
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 33.0 bits (75), Expect = 0.14
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
LSGG K+R+ +AR + PQ ILDE T+ + ++E R + G T+ +H
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 33.2 bits (76), Expect = 0.14
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 204 ADLTEYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILD 259
A+L E ++ L + W+ V D + LSGG++QR+ +AR P+ ++D
Sbjct: 134 AELDEIVETS-----LRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188
Query: 260 ECTSA 264
E SA
Sbjct: 189 EPCSA 193
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 32.9 bits (75), Expect = 0.14
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQ-KGITDADLTEYLQKVQLGYILNREKG 224
R K+ V Q+P ++ D V Y + + K D + + L V L
Sbjct: 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGL--------- 135
Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
W+ + D + LSGG++QR+ +AR +P ++DE SA+
Sbjct: 136 WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 33.5 bits (77), Expect = 0.15
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDECTSA 264
+ +LSGGEK A+A LF +RP F +LDE +A
Sbjct: 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAA 1100
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 32.5 bits (75), Expect = 0.16
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS 263
LSGGE++RV++A P LDE TS
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTS 140
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 32.9 bits (76), Expect = 0.16
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QRVAM R P + DE
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDE 160
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 32.7 bits (74), Expect = 0.17
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTV 287
+ LSGG++QRVA+AR + + + DE +++ + + + R++ GIT+
Sbjct: 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209
Query: 288 SHR 290
H+
Sbjct: 210 LHQ 212
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 32.9 bits (76), Expect = 0.19
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 234 VLSGGEKQRVAMARLFYHRPQFAILDECT------SAVSVDVEGSMYEYCREVGITLFTV 287
VLSGGEK R+ +L +P ++DE T S S+++ YE G TL V
Sbjct: 438 VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYE-----G-TLIFV 491
Query: 288 SH 289
SH
Sbjct: 492 SH 493
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 32.9 bits (76), Expect = 0.21
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 208 EYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMAR 247
+L V LGY+ L+R LSGGE QR+ +A
Sbjct: 463 GFLVDVGLGYLTLSRS---------AGTLSGGEAQRIRLAT 494
Score = 27.9 bits (63), Expect = 7.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 235 LSGGEKQRVAMARLFYHR---PQFAILDECT 262
LSGGE QRV +A+ R ILDE T
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 32.3 bits (74), Expect = 0.22
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
D I +LSGG++Q +++ H P+ +LDE T+A
Sbjct: 144 DRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 32.7 bits (74), Expect = 0.23
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 221 REKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
R+ G + A + D LSGG +QRV +AR P ++DE SA+
Sbjct: 150 RQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 32.1 bits (73), Expect = 0.25
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYE----YCREVGITLFTVS 288
LSGG+ +RVA+A + + P+ LDE A +D EG M + Y + G T+ V+
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDE--PAAGLDPEGRKEMMQLFKDYQKA-GHTVILVT 202
Query: 289 H 289
H
Sbjct: 203 H 203
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 32.0 bits (73), Expect = 0.26
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
SGG +QR+ +AR RP+ +DE T + V V+ + + R E+G+ + V+H
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 32.3 bits (74), Expect = 0.26
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
LSGG+ +RVA+A + P+ +LDE T+ +D +G Y+ +E G+T V+
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAG--LDPKGRKEMMEMFYKLHKEKGLTTVLVT 203
Query: 289 H 289
H
Sbjct: 204 H 204
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 31.8 bits (72), Expect = 0.34
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG 224
R +L + Q P + G++R + P K TD L E L+ QL ++ G
Sbjct: 94 RSRLSIILQDPILFSGSIRFN-LDPECK-------CTDDRLWEALEIAQLKNMVKSLPGG 145
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGIT 283
D V + + S G++Q +AR F + I+DE T+++ + E + ++V +T
Sbjct: 146 LDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL----QKVVMT 201
Query: 284 LF------TVSHRKS 292
F T++HR S
Sbjct: 202 AFADRTVVTIAHRVS 216
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 31.5 bits (72), Expect = 0.36
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCREVGITLFTVSH 289
LS G++ R +A H P+ LDE T + V ++ + EY RE G T+ SH
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 31.1 bits (71), Expect = 0.39
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 210 LQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA--ILDECTS 263
L V LGY+ L ++ LSGGE QRV +A + P ILDE ++
Sbjct: 71 LIDVGLGYLTLGQKLS---------TLSGGELQRVKLASELFSEPPGTLFILDEPST 118
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 31.9 bits (73), Expect = 0.39
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
V + LSGGE++R+A A P DE TS
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 31.6 bits (72), Expect = 0.41
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCREVGITLFTVSH 289
LS G++ R +A H P+ LDE T + V ++ + EY E T+ +H
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.8 bits (72), Expect = 0.47
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 228 VADWIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTS 263
+ + ID LSGGEK RVA+A+ + I+DE T+
Sbjct: 795 MVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTA 836
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 31.7 bits (72), Expect = 0.48
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVS 288
I LSGG +Q+V +++ P+ I DE T + V + +Y+ R++ G + VS
Sbjct: 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 31.6 bits (72), Expect = 0.51
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRV++AR + Q + DE T A+ +V +++ R+ G T+ V+H
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTH 202
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 31.6 bits (72), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
I LSGG +Q+V + R +P+ +LDE T + V G+ +E
Sbjct: 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV---GAKFE 429
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 31.3 bits (71), Expect = 0.57
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
LSGG K+R+ +AR + P +LDE T+ + M+E R + G T+ +H
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 30.9 bits (70), Expect = 0.58
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSA 264
SGGE+QRV +AR F +LDE T++
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTAS 182
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 30.8 bits (70), Expect = 0.71
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 236 SGGEKQR---VAMARLFYHRPQFAILDECTSAVSVD 268
SGGEK+R + MA L + AILDE S + +D
Sbjct: 153 SGGEKKRNEILQMALL---DSELAILDETDSGLDID 185
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 31.2 bits (71), Expect = 0.75
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF--YH-RPQ-FAILDE 260
+ +LSGGEK A+A LF + +P F ILDE
Sbjct: 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDE 1119
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 30.9 bits (70), Expect = 0.76
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
L+ G+KQR+ +AR RP+ I DE
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADE 175
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 30.7 bits (70), Expect = 0.78
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY--HR---P--QFAIL 258
L E + + L L R ++ LSGGE QRV +A + P Q +L
Sbjct: 107 LNEVAEALGLDDKLGRS---------VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157
Query: 259 DECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
DE +++ V + ++ E C++ GI + SH
Sbjct: 158 DEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSH 191
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 31.0 bits (70), Expect = 0.79
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
+I +SGGE++RV++A P ILDE TS +
Sbjct: 203 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 30.7 bits (69), Expect = 0.79
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSH 289
LSGG+ Q VA+A + P+ I DE TS + D ++ E + E G T+ ++H
Sbjct: 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH 194
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 30.4 bits (69), Expect = 0.88
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 24/87 (27%)
Query: 182 TLRDQVI---YPH-----TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233
T+RD V +P+ TKED + I + + EYL L + +R ++D
Sbjct: 91 TVRDLVGFGRFPYSQGRLTKED---RRIINEAI-EYLH---LEDLSDR---------YLD 134
Query: 234 VLSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QR +A + + +LDE
Sbjct: 135 ELSGGQRQRAFIAMVLAQDTDYVLLDE 161
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 30.3 bits (69), Expect = 0.94
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSH 289
LSGG++QRV +AR P ++DE A+ + E +E+G T+ V+H
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 30.3 bits (68), Expect = 0.95
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
PY+TL R+ +Y I +TE + L ++++ G +L
Sbjct: 87 PYLTL---RENCLYD------IHFSPGAVGITELCRLFSLEHLIDYPCG---------LL 128
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAV---SVDVEGSMYEYCREVGITLFTVSHRK 291
S G+K++VA+ RL+ + + +LDE A+ S+ + + R G + SH+
Sbjct: 129 SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 28.3 bits (64), Expect = 1.2
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 232 IDVLSGGEKQ-------RVAMARLFY-----HRPQFAILDECTSAVSVDVEGSMYEYCRE 279
LSGGEKQ A+A + P+ LDE + + + S+ E RE
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 30.1 bits (68), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LS G+K+RVA+A + P +LDE
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDE 164
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 29.7 bits (67), Expect = 1.4
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
TE + +Q+ IL+RE + LSGGE QRVA+A +LDE SA
Sbjct: 97 TEIAKPLQIEQILDRE---------VPELSGGELQRVAIAACLSKDADIYLLDE-PSA-Y 145
Query: 267 VDVE 270
+DVE
Sbjct: 146 LDVE 149
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.8 bits (65), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 234 VLSGGEKQRVAMARLF----YHRPQFAILDECTSA 264
+LSGGEK A+A +F F +LDE +A
Sbjct: 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAA 128
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 29.4 bits (66), Expect = 2.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 229 ADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
A W D LSGG +QRV +AR F ++DE SA
Sbjct: 155 AQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSA 194
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 28.7 bits (65), Expect = 2.5
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 15/50 (30%)
Query: 12 RMLVKLAEAIG-RLVLAG--------------REMTRLAGFTARMTEIIR 46
L++LAE G ++VL G R + G TA +TEI R
Sbjct: 110 ARLLRLAEKAGAKVVLVGDPAQLQAVGAGGPFRLLAERGGITAELTEIRR 159
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 29.0 bits (65), Expect = 2.5
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH-----RP--QFAILDECTSAVS 266
L + D + + LSGGE QRV +A + P Q +LDE +++
Sbjct: 105 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 267 VDVEGSMY----EYCREVGITLFTVSH 289
V + ++ C++ G+ + SH
Sbjct: 165 VAQQSALDRLLSALCQQ-GLAIVMSSH 190
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 28.6 bits (64), Expect = 3.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 236 SGGEKQR---VAMARLFYHRPQFAILDECTSAVSVD 268
SGGEK+R + MA L P+ ILDE S + +D
Sbjct: 147 SGGEKKRNDILQMAVL---EPELCILDESDSGLDID 179
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
+++ +SGGE++RV++A R D T
Sbjct: 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNST 146
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 28.5 bits (64), Expect = 3.3
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
G+ D+ + E L V L ++ S G KQR+ +A + P+ ILD
Sbjct: 99 GLPDSRIDEVLNIVDLTNTGKKKAK---------QFSLGMKQRLGIAIALLNHPKLLILD 149
Query: 260 ECT 262
E T
Sbjct: 150 EPT 152
>gnl|CDD|227338 COG5005, COG5005, Mu-like prophage protein gpG [General function
prediction only].
Length = 140
Score = 27.9 bits (62), Expect = 3.4
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI 188
FGG K R + +P RP++ L +Q I
Sbjct: 98 FGG---KTGRPRKVAIPARPFLGLTPDDEQEI 126
Score = 27.9 bits (62), Expect = 3.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 123 FGGTVTKPPRGKLFYVPQRPYMTLG 147
FGG K R + +P RP++ L
Sbjct: 98 FGG---KTGRPRKVAIPARPFLGLT 119
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 28.8 bits (65), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 235 LSGGEKQRVAMARLFYHR---PQFAILDECTS 263
LSGGE QR+ +A+ R ILDE T+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTT 861
Score = 28.8 bits (65), Expect = 4.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 195 DMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMA 246
+ + K I + +L V L Y+ L+R LSGGE QR+ +A
Sbjct: 459 EEVLKEIRER--LGFLIDVGLDYLSLSRA---------AGTLSGGEAQRIRLA 500
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 28.3 bits (63), Expect = 4.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
LSGGE QRVA+A F + DE ++ + ++
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 28.4 bits (64), Expect = 4.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 208 EYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMAR 247
+L V LGY+ L+R LSGGE QR+ +A
Sbjct: 119 GFLVDVGLGYLTLSRSAP---------TLSGGEAQRIRLAT 150
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 28.4 bits (63), Expect = 4.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
I LS G+K+RVA+A + ++ +LDE T+ +
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 28.0 bits (63), Expect = 5.2
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
+L++V L NR+ G L+ G+++R+ +AR +P+ +LDE
Sbjct: 137 WLERVGLLEHANRQAG---------NLAYGQQRRLEIARCMVTQPEILMLDE 179
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 27.9 bits (63), Expect = 5.7
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
LS G+++R+ +AR +P+ +LDE + ++ + + E RE+ G+T+ + H
Sbjct: 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209
>gnl|CDD|218042 pfam04357, DUF490, Family of unknown function (DUF490).
Length = 365
Score = 28.1 bits (63), Expect = 6.3
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 45 IRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRS 104
+ V K L + +YV V G SE YR L + G G D +
Sbjct: 306 VEVGKYLTDRLYVSYGVGLFG-SGTSEVTLEYRLTPNLSLEASSDYGGEGSGVDLFYKFD 364
Query: 105 F 105
F
Sbjct: 365 F 365
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.1 bits (63), Expect = 7.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDE 260
++ +SGGEK A++ +F ++P F DE
Sbjct: 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDE 1104
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 27.6 bits (62), Expect = 7.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQ----FAILDECT 262
L V LGYI + LSGGE QR+ +A+ + ILDE T
Sbjct: 153 LCDVGLGYI--------KLGQPATTLSGGEAQRIKLAK-ELSKRSTGKTLYILDEPT 200
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 28.2 bits (63), Expect = 7.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
D++ +SGGE++RV++A + D T
Sbjct: 205 DFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 27.7 bits (63), Expect = 8.2
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 15/37 (40%)
Query: 235 LSGGEKQRVAMA---------RLFYHRPQFAILDECT 262
LSGGE QRV +A + Y ILDE T
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLY------ILDEPT 861
>gnl|CDD|222898 PHA02594, nadV, nicotinamide phosphoribosyl transferase;
Provisional.
Length = 470
Score = 27.7 bits (62), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 VRGALNLLWPLFGGTVTK 129
+ GAL L +FGGTV
Sbjct: 308 ICGALETLGEIFGGTVNS 325
>gnl|CDD|225533 COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and
metabolism].
Length = 498
Score = 27.6 bits (62), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 17 LAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKD-LNEGVY 56
L E I R ++A R + G++ E+I +L LN+GV
Sbjct: 92 LPEEIVRAIMALRLNSLARGYSGVRLEVIELLLALLNKGVI 132
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 27.3 bits (61), Expect = 9.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LS G+KQ + + L P+ +LDE
Sbjct: 148 LSHGQKQWLEIGMLLAQDPKLLLLDE 173
>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional.
Length = 263
Score = 27.2 bits (61), Expect = 9.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 LAEAIGRLVLAGREMTRLAGFTARMTEIIRV 47
LA A RL+L GR +L AR+ R
Sbjct: 25 LAAAGARLLLVGRNAEKLEALAARLPYPGRH 55
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.438
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,710,947
Number of extensions: 1556352
Number of successful extensions: 2184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2126
Number of HSP's successfully gapped: 363
Length of query: 298
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 202
Effective length of database: 6,679,618
Effective search space: 1349282836
Effective search space used: 1349282836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.4 bits)