RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11400
(298 letters)
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 64.9 bits (159), Expect = 3e-12
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R + VPQ + T+ D + Y D ++ A + + I+ +
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA--------IMAFPE 178
Query: 224 GWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE----GSM 273
G+ T V LSGGEKQRVA+AR P +LDE TSA+ E S+
Sbjct: 179 GYRTQ-----VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233
Query: 274 YEYCREVGITLFTVSHRKS 292
+ C T V+HR S
Sbjct: 234 AKVCA--NRTTIVVAHRLS 250
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 61.0 bits (149), Expect = 5e-11
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R + VPQ + T++ ++Y ++ + K A L ++ I K
Sbjct: 92 RSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDF--------IEALPK 143
Query: 224 GWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
WDT+ V LSGGE+QR+A+AR P+ I DE TS++ E +
Sbjct: 144 KWDTI-----VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAV 198
Query: 278 REV--GITLFTVSHRKS 292
++ TL ++HR S
Sbjct: 199 EDLRKNRTLIIIAHRLS 215
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 61.6 bits (150), Expect = 7e-11
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 33/143 (23%)
Query: 158 GGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADL-----TEYLQK 212
G P+ + PQ+ +P T + K I L T+ ++
Sbjct: 406 EGQDI--PKLNVSMKPQKIAP---------KFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454
Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE-- 270
+++ I+++E + LSGGE QRVA+ ++DE ++ +D E
Sbjct: 455 LRIDDIIDQE---------VQHLSGGELQRVAIVLALGIPADIYLIDEPSAY--LDSEQR 503
Query: 271 ----GSMYEYCREVGITLFTVSH 289
+ + T F V H
Sbjct: 504 IICSKVIRRFILHNKKTAFIVEH 526
Score = 45.8 bits (109), Expect = 9e-06
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 24/136 (17%)
Query: 159 GTVTKPPRGKLFYVPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGY 217
+ KP YV P G ++ + E + D+ Y++ +QL
Sbjct: 165 KAIIKPQ-----YVDNIPRAIKGPVQKVGELLKLRMEKSPE------DVKRYIKILQLEN 213
Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
+L R+ I+ LSGGE QR A+ + DE +S + V + +
Sbjct: 214 VLKRD---------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264
Query: 278 REV---GITLFTVSHR 290
R + + V H
Sbjct: 265 RSLLAPTKYVICVEHD 280
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 59.3 bits (144), Expect = 6e-10
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
R + V Q P + T+ + + Y D I+K + +A+ +++ K+ +
Sbjct: 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF------ 516
Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
DT V + LSGG+KQR+A+AR P+ +LDE TSA+ + E + +
Sbjct: 517 --DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574
Query: 281 GITLFTVSHRKS 292
G T ++HR S
Sbjct: 575 GRTTIVIAHRLS 586
Score = 56.2 bits (136), Expect = 5e-09
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R +L V Q P + ++ + + Y ++ ++ ++ + +I +
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRV-----VSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
++T V D LSGG+KQR+A+AR +P +LDE TSA
Sbjct: 1161 YNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 58.5 bits (142), Expect = 7e-10
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 29/141 (20%)
Query: 158 GGTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDAD-LTEYLQK 212
G V + Y PQ T+ +++ + + TE L+
Sbjct: 410 EGKVE--WDLTVAYKPQYIKAEYEGTVY----ELL-----SKIDSSKLNSNFYKTELLKP 458
Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA----VSVD 268
+ + + +R ++ LSGGE QRVA+A +LDE ++ +
Sbjct: 459 LGIIDLYDRN---------VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 269 VEGSMYEYCREVGITLFTVSH 289
V ++ + T V H
Sbjct: 510 VSRAIRHLMEKNEKTALVVEH 530
Score = 54.2 bits (131), Expect = 2e-08
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 167 GKLFYVPQRPY------MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220
G++ V + Y G +R+ + K D + K E +++++L +L+
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELL----KKVDEVGK------FEEVVKELELENVLD 223
Query: 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY-----E 275
RE + LSGGE QRVA+A + F DE +S +D+ +
Sbjct: 224 RE---------LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY--LDIRQRLKVARVIR 272
Query: 276 YCREVGITLFTVSHR 290
G + V H
Sbjct: 273 RLANEGKAVLVVEHD 287
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 57.3 bits (139), Expect = 1e-09
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 26/126 (20%)
Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD 230
+ T+ + E +++ L +L
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFF-------EEVTKRLNLHRLLESN-------- 382
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY-------EYCREVGIT 283
++ LSGGE Q++ +A +LD+ +S +DVE Y RE
Sbjct: 383 -VNDLSGGELQKLYIAATLAKEADLYVLDQPSSY--LDVE-ERYIVAKAIKRVTRERKAV 438
Query: 284 LFTVSH 289
F + H
Sbjct: 439 TFIIDH 444
Score = 52.7 bits (127), Expect = 5e-08
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 159 GTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218
+ K+ YV GT+ + TK D K E + + + +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEI----LTKIDERGK------KDEVKELLNMTNL 131
Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR 278
N++ ++LSGG QR+ +A I D+ +S + V +M + R
Sbjct: 132 WNKD---------ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182
Query: 279 EV--GITLFTVSHR 290
E+ + V H
Sbjct: 183 ELLKNKYVIVVDHD 196
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 55.9 bits (136), Expect = 2e-09
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 20/112 (17%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R ++ +V Q + GT+R+ + Y + TD DL + L ++ N
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGD------YTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 225 WDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
+T V +SGG++QR+A+AR F P+ +LDE T++ +D E
Sbjct: 129 LNTE-----VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS--LDSE 173
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 55.8 bits (135), Expect = 3e-09
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 17/137 (12%)
Query: 156 LFGGTVTKPPRGKLFYVPQRP-YMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213
G + R + Y P +G T+ D V KG+ E L+ +
Sbjct: 61 FINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLY-----EELKGLDRDLFLEMLKAL 115
Query: 214 QLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
+LG IL R+ + LS G+ V + +P+ LDE V
Sbjct: 116 KLGEEILRRK---------LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166
Query: 273 MYEYCREVGITLFTVSH 289
+ Y +E G V+H
Sbjct: 167 ISRYIKEYGKEGILVTH 183
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 55.9 bits (135), Expect = 4e-09
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKG 224
R +PQ+ ++ GT R + P+ +D ++ + +V L I
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLD-PNAAH-------SDQEIWKVADEVGLRSVIEQFPGK 144
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
D + D VLS G KQ + +AR + + +LDE ++ +D
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA--HLDPV 189
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 56.1 bits (136), Expect = 4e-09
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 32/136 (23%)
Query: 161 VTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220
KP K + T+ L ++ + + TE L+ + + + +
Sbjct: 350 AYKPQYIKA--DYE---GTVYELLSKIDASKLNSNFYK--------TELLKPLGIIDLYD 396
Query: 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY------ 274
RE ++ LSGGE QRVA+A +LDE ++ +DVE
Sbjct: 397 RE---------VNELSGGELQRVAIAATLLRDADIYLLDEPSAY--LDVE-QRLAVSRAI 444
Query: 275 -EYCREVGITLFTVSH 289
+ T V H
Sbjct: 445 RHLMEKNEKTALVVEH 460
Score = 51.5 bits (124), Expect = 1e-07
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 167 GKLFYVPQRPYMTL--GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
G++ V + Y+ L ++ +VI K D K L E ++ ++L +L RE
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK------LEEVVKALELENVLERE-- 155
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
I LSGGE QRVA+A F DE +S
Sbjct: 156 -------IQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 55.2 bits (134), Expect = 4e-09
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 25/138 (18%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL----GYILNR 221
R ++ V Q + ++ D + + + + +L +I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISL----------ANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 222 EKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE------GSMY 274
+G++T V + LSGG++QR+A+AR + P+ I DE TSA +D E +M+
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA--LDYESEHVIMRNMH 189
Query: 275 EYCREVGITLFTVSHRKS 292
+ C+ G T+ ++HR S
Sbjct: 190 KICK--GRTVIIIAHRLS 205
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 52.2 bits (126), Expect = 8e-08
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 19/107 (17%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNREKG 224
RG + VPQ + GT+++ + + +ED TD ++ E + Q +I++ +G
Sbjct: 416 RGHISAVPQETVLFSGTIKENLKW--GRED-----ATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 225 WDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
+D+ V SGG+KQR+++AR +P+ ILD+CTS+V
Sbjct: 469 YDSR-----VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 51.2 bits (123), Expect = 1e-07
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 37/137 (27%)
Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI--------YPHT------KEDMIQKG 200
G + G++ + Q ++ GT+++ +I Y +ED+ +
Sbjct: 89 EPSEGKIKH--SGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISK-- 144
Query: 201 ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
+ D LG E G I LSGG++ R+++AR Y +LD
Sbjct: 145 FAEKDNIV------LG-----EGG-------IT-LSGGQRARISLARAVYKDADLYLLDS 185
Query: 261 CTSAVSVDVEGSMYEYC 277
+ V E ++E C
Sbjct: 186 PFGYLDVLTEKEIFESC 202
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 49.8 bits (120), Expect = 2e-07
Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 38/139 (27%)
Query: 166 RGKLFYVPQRP--YMTLGTLRDQVIY-------PHTKEDMIQKGITDADLTEYLQKVQLG 216
+GK+F++P+ + ++ D + K + I + ++ + +K
Sbjct: 77 KGKIFFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNE-IMDALESVEVLDLKKK---- 130
Query: 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG----- 271
+ LS G +RV +A + +LD+ V++D +
Sbjct: 131 ---------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPV--VAIDEDSKHKVL 173
Query: 272 -SMYEYCREVGITLFTVSH 289
S+ E +E GI + +
Sbjct: 174 KSILEILKEKGIVIISSRE 192
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 49.9 bits (120), Expect = 2e-07
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 23/134 (17%)
Query: 167 GKLFYVPQRPYMTLG-TLRDQVI---YPHTKEDMIQKGITDADL---TEYLQKVQLGYIL 219
+ +VPQ ++ D V+ H D + L + L ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN---TFAKPKSHDYQVAMQALDYLNLTHLA 122
Query: 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYE 275
RE LSGG++Q + +AR + +LDE TSA+ V + +
Sbjct: 123 KRE---------FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173
Query: 276 YCREVGITLFTVSH 289
+ +T+ +H
Sbjct: 174 LAQSQNMTVVFTTH 187
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 50.8 bits (121), Expect = 3e-07
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR 242
+ +V + +T ++ E+ LG L+ E + I LSGG+K +
Sbjct: 857 MVAEVDMKEALASGQFRPLTRKEIEEHCS--MLG--LDPEIVSHSR---IRGLSGGQKVK 909
Query: 243 VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
+ +A + RP +LDE T+ + D G++ + +E + ++H
Sbjct: 910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956
Score = 46.6 bits (110), Expect = 7e-06
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
I LSGG K ++A+AR +LDE T+ + + Y GIT T+SH
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 49.1 bits (118), Expect = 4e-07
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 22/130 (16%)
Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT-KEDMIQKGITDADLTEYLQ-- 211
G + G++ + Q ++ GT+++ +I+ + E + I L E +
Sbjct: 59 EPSEGKIKH--SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 212 ----KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
+ LG E G I LSGG++ R+++AR Y +LD + V
Sbjct: 117 AEKDNIVLG-----EGG-------IT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
Query: 268 DVEGSMYEYC 277
E ++E C
Sbjct: 164 LTEKEIFESC 173
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 49.9 bits (120), Expect = 5e-07
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 34/129 (26%)
Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD 203
L LR F V Q ++ T+ + + Y E T
Sbjct: 410 YKLTNLRRH----FA------------LVSQNVHLFNDTIANNIAYAAEGE------YTR 447
Query: 204 ADLTEYLQKVQL-GYILNREKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFA 256
+ + ++ +I N +G DTV + LSGG++QRVA+AR
Sbjct: 448 EQIEQAARQAHAMEFIENMPQGLDTV-----IGENGTSLSGGQRQRVAIARALLRDAPVL 502
Query: 257 ILDECTSAV 265
ILDE TSA+
Sbjct: 503 ILDEATSAL 511
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 48.7 bits (117), Expect = 6e-07
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 42/140 (30%)
Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIY--PHTKE---------------DMI 197
G V +G + YVPQ+ ++ +LR+ +++ + +++
Sbjct: 56 DKVEGHVAI--KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEIL 113
Query: 198 QKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI 257
G D TE +G EKG ++ LSGG+KQRV++AR Y +
Sbjct: 114 PSG----DRTE------IG-----EKG-------VN-LSGGQKQRVSLARAVYSNADIYL 150
Query: 258 LDECTSAVSVDVEGSMYEYC 277
D+ SAV V ++E
Sbjct: 151 FDDPLSAVDAHVGKHIFENV 170
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 49.5 bits (119), Expect = 7e-07
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 35/129 (27%)
Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD 203
G+LR+Q G V Q + T+++ ++ + TD
Sbjct: 408 FLTGSLRNQ----IG------------LVQQDNILFSDTVKENILL--GRPT-----ATD 444
Query: 204 ADLTEYLQKVQL-GYILNREKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFA 256
++ E + +I+N +G+DT V LSGG+KQR+++AR+F + P
Sbjct: 445 EEVVEAAKMANAHDFIMNLPQGYDTE-----VGERGVKLSGGQKQRLSIARIFLNNPPIL 499
Query: 257 ILDECTSAV 265
ILDE TSA+
Sbjct: 500 ILDEATSAL 508
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 48.3 bits (116), Expect = 8e-07
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD------VEGSMYEYCREVGITLFTVS 288
LSGG++Q VA+AR +P+ ILD TSA +D V+ +YE T+ ++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSA--LDAGNQLRVQRLLYESPEWASRTVLLIT 214
Query: 289 HRKS 292
+ S
Sbjct: 215 QQLS 218
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 47.6 bits (114), Expect = 1e-06
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 32/133 (24%)
Query: 171 YVPQRPYMTLG-TLRDQVI---YPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
Y+ Q+ + + + T+ +++ + + L L R
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------DVAGALALDDKLGRS---- 123
Query: 227 TVADWIDVLSGGEKQRVAMAR-------LFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279
+ LSGGE QRV +A Q +LDE +++ V + ++ +
Sbjct: 124 -----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 280 V---GITLFTVSH 289
+ G+ + SH
Sbjct: 179 LSQQGLAIVMSSH 191
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 48.0 bits (115), Expect = 2e-06
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 34/129 (26%)
Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD 203
TL +LR+Q V Q ++ T+ + + Y T+E +
Sbjct: 410 YTLASLRNQ----VA------------LVSQNVHLFNDTVANNIAYARTEE------YSR 447
Query: 204 ADLTEYLQKVQL-GYILNREKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFA 256
+ E + +I + G DT+ + LSGG++QR+A+AR
Sbjct: 448 EQIEEAARMAYAMDFINKMDNGLDTI-----IGENGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 257 ILDECTSAV 265
ILDE TSA+
Sbjct: 503 ILDEATSAL 511
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 46.4 bits (111), Expect = 3e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E +K+ + ++L+R+ LSGGE+QRVA+AR +P+ +LDE SAV +
Sbjct: 109 EMAEKLGIAHLLDRK---------PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159
Query: 268 DVEGSM----YEYCREVGITLFTVSH 289
+G + RE + + V+H
Sbjct: 160 KTKGVLMEELRFVQREFDVPILHVTH 185
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 45.2 bits (108), Expect = 8e-06
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSH 289
LS G+K+RVA+A + P+ ILDE T+ ++ + E +E+GIT+ +H
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 44.5 bits (106), Expect = 2e-05
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
+ L+ V + + I LS GEKQRV +AR +PQ ILDE + +
Sbjct: 144 QLLKLVGMSAKAQQY---------IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF 194
Query: 268 DVEGSMYEYCREV-----GITLFTVSHR 290
S+ + + + V+H
Sbjct: 195 IARESLLSILDSLSDSYPTLAMIYVTHF 222
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG-----SMYEYCREVGITLFTVSH 289
LSGGEK+RVA+A + H P ILDE +D EG + E + +G T+ +SH
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVG--LDREGKTDLLRIVEKWKTLGKTVILISH 196
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNREKG 224
R K+ V Q P + ++ + + Y +D +T ++ + + +I N +G
Sbjct: 417 RSKIGTVSQEPILFSCSIAENIAY--GADD--PSSVTAEEIQRVAEVANAVAFIRNFPQG 472
Query: 225 WDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
++TV V LSGG+KQR+A+AR P+ +LDE TSA
Sbjct: 473 FNTV-----VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 43.7 bits (104), Expect = 3e-05
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT----SAVSVDVEGSMYEYCREVGITLFTVSH 289
LSGG++QRVA+AR + P + D+ T S + + + E G T+ V+H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
LSGG+KQRVA+AR P+ + D+ TSA
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSA 193
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 42.9 bits (102), Expect = 4e-05
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREV-- 280
+ + D + S G +++ +AR P+ AILDE TS +DV + + ++
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSG--LDVLNAREVRKILKQASQ 194
Query: 281 -GITLFTVSH 289
G+T+ SH
Sbjct: 195 EGLTILVSSH 204
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 42.2 bits (100), Expect = 1e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
E L+ ++L NR LSGG++QRVA+AR RPQ + DE +A+
Sbjct: 127 RELLRFMRLESYANRF---------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 267 VDVEGSM-YEYCR---EVGITLFTVSH 289
+ + + E+G+T V+H
Sbjct: 178 TQIRRELRTFVRQVHDEMGVTSVFVTH 204
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 41.4 bits (98), Expect = 1e-04
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA-----VSVDVEGSMYEYCREVGITLFTVSH 289
LSGG+ QRVA+AR P+ + DE TSA V +V M + E G+T+ V+H
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVLSVMKQLANE-GMTMVVVTH 217
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 41.0 bits (97), Expect = 3e-04
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 223 KGWDTV-ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
+G++TV D + LS G++Q +A+ R F P+ ILDE TS +VD
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS--NVD 523
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 39.8 bits (94), Expect = 5e-04
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
+YL KV + E+ + LSGG++QRV++AR P + DE TSA
Sbjct: 135 KYLAKVGID-----ERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 39.9 bits (94), Expect = 7e-04
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM-YEYC---REVGITLFTVSH 289
LSGG++QR A+AR P+ +LDE SA+ + + + R G + VSH
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 39.5 bits (93), Expect = 8e-04
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
+ + +++ ++L+R LSGGE+QRVA+AR P+ +LDE SA+
Sbjct: 110 DTARDLKIEHLLDRN---------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 268 DVEGSM-YEYC---REVGITLFTVSH 289
+ + ++ +T+ ++H
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITH 186
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 37.9 bits (89), Expect = 0.002
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT----SAVSVDVEGSMYEYCREVGITLFTVSH 289
LSGGE+QRVA+AR + P DE T SA + V + E G ++ V+H
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NEGGTSIVMVTH 198
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 37.3 bits (86), Expect = 0.004
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 194 EDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA------R 247
I T+ +E + + + W+ + LSGGE+ + +A
Sbjct: 209 ASEIFAEFTEGKYSEVVVR-AEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSL 267
Query: 248 LFYHRPQFAILDECTSAVSVDVEG-----SMYEYCREVGITLFTVSHRKSL 293
ILDE T +D E ++ E + + VSH + L
Sbjct: 268 YLAGEISLLILDEPTP--YLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 78/268 (29%)
Query: 26 LAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85
L G+ + G+ + + E G + V + E ++ N++
Sbjct: 60 LVGKFL----GYVSSLVE------PSKVGQF--DQVLNLCLTEF-ENCYLEGNDIHALAA 106
Query: 86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMT 145
L L +++ A + K LF
Sbjct: 107 KLLQENDTTLVKTKELIKNYIT-------ARIMA----KRPFDKKSNSALFRAVGE---- 151
Query: 146 LGTLRDQLWPLFGGTVTKPPRGKLFYVPQ---RPYMTLGTLRD-QVIYPHTKEDMIQK-G 200
G + L +FGG Q Y LRD Y D+I+
Sbjct: 152 -GNAQ--LVAIFGG--------------QGNTDDY--FEELRDLYQTYHVLVGDLIKFSA 192
Query: 201 ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
T ++L + + +G + + +W L P L
Sbjct: 193 ETLSELIRTTLDAEKVF----TQGLN-ILEW---LENPSN-----------TPDKDYL-- 231
Query: 261 CTSAVSVDVEG--SMYEY---CREVGIT 283
+ +S + G + Y + +G T
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Score = 30.4 bits (68), Expect = 0.85
Identities = 35/222 (15%), Positives = 59/222 (26%), Gaps = 85/222 (38%)
Query: 94 GLGFDSR---------WGR--SFFDYMFG------VRGALNLLWPLFGGTVTKPPRGKLF 136
G+G D W R + F +G V L FGG +GK
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG-----EKGK-- 1682
Query: 137 YVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDM 196
+ + Y + GKL ++ + + + K +
Sbjct: 1683 RIREN-YSAM-------------IFETIVDGKL--KTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 197 IQKGITDADLTEYLQ-------KVQLGYILNREKGWDTVADWIDVLSG---GEKQR---- 242
T++ Q K + + KG + +G GE
Sbjct: 1727 --------SATQFTQPALTLMEKAAFEDL--KSKG---LIPADATFAGHSLGE---YAAL 1770
Query: 243 VAMA---------RLFYHRPQFAILDECTSAVSVDVEG-SMY 274
++A + ++R AV D G S Y
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTM-----QVAVPRDELGRSNY 1807
Score = 28.1 bits (62), Expect = 4.5
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKL---FYVPQRPYMTLGTLRDQ--VIYPHTKEDMIQ 198
M + R PL T++ G L VP + L++Q I P E
Sbjct: 1 MDAYSTR----PL---TLSH---GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
E + K LGY+ + V + VL
Sbjct: 51 DD-EPTTPAELVGKF-LGYV-SSLVEPSKVGQFDQVL 84
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 36.9 bits (86), Expect = 0.006
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSG ++QRVA+AR P +LDE
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDE 166
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 35.3 bits (82), Expect = 0.017
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QRVA+AR P+ +LDE
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDE 159
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel,
bioinformatics, transcription; NMR {Pyrococcus
horikoshii}
Length = 92
Score = 33.2 bits (75), Expect = 0.020
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 34 LAGFTARMTEI--------IRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG 85
LA F + I R + +G +V + + + EG F R +G +
Sbjct: 4 LAKFHTTVHRIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVI 63
Query: 86 ITLGLRS 92
I LR
Sbjct: 64 IPKALRD 70
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 34.9 bits (81), Expect = 0.027
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QRVA+AR P ++DE
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDE 167
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 33.6 bits (77), Expect = 0.031
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 19/92 (20%)
Query: 208 EYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMA------RLFYHRPQFAILDE 260
E ++ + + R + LSGGE+ + +A ILDE
Sbjct: 39 ENKVRLFVVWEGKERP---------LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE 89
Query: 261 CTSAV-SVDVEG--SMYEYCREVGITLFTVSH 289
T + ++ E + + VSH
Sbjct: 90 PTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 34.5 bits (80), Expect = 0.035
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QRVA+AR +P+ + DE
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDE 159
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 34.5 bits (80), Expect = 0.036
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG++QRVA+ R +PQ ++DE
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDE 165
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 33.3 bits (77), Expect = 0.075
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 236 SGGEKQR---VAMARLFYHRPQFAILDECTSAVSVD 268
SGGEK+R + + L P +A+LDE S + +D
Sbjct: 145 SGGEKKRNEILQLLVL---EPTYAVLDETDSGLDID 177
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 33.5 bits (77), Expect = 0.083
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDE 260
++ LSGGEK A+A LF ++P F +LDE
Sbjct: 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDE 363
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 32.9 bits (76), Expect = 0.093
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 236 SGGEKQR---VAMARLFYHRPQFAILDECTSAVSVD 268
SGGEK+R + MA L P+ ILDE S + +D
Sbjct: 166 SGGEKKRNDILQMAVL---EPELCILDESDSGLDID 198
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.13
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 180 LGTLRDQVIYPHTKEDMIQKGITD--ADLTEYLQKVQLGY-ILNREKGWDTVADW----- 231
L +R + + +K + L E + L Y + K ++
Sbjct: 217 LDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVL 276
Query: 232 -IDVLSGGEKQRVAMARLF-------YHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
ID LSGGE+ VA++ +R + ILDE T + + + E R+V
Sbjct: 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI 336
Query: 282 ITLFTVSHRKSL 293
+ ++H + L
Sbjct: 337 PQMIIITHHREL 348
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 32.0 bits (74), Expect = 0.16
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGGE+Q +A+ R RP+ ++DE
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDE 165
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 30.3 bits (69), Expect = 0.44
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDE 260
I+ +SGGEK A+A +F +P F + DE
Sbjct: 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDE 94
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 30.6 bits (70), Expect = 0.59
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 235 LSGGEKQRVAMAR 247
LSGG++QRVA+ R
Sbjct: 134 LSGGQRQRVAIGR 146
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 30.0 bits (68), Expect = 0.78
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 232 IDVLSGGEKQRVAMARLF---YHRPQ-FAILDE 260
+ +LSGGEK V +A LF +P F +LDE
Sbjct: 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDE 249
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 28.6 bits (65), Expect = 3.3
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 15/37 (40%)
Query: 235 LSGGEKQRVAMA---------RLFYHRPQFAILDECT 262
LSGGE QR+ +A R Y ILDE T
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLY------ILDEPT 836
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 28.3 bits (64), Expect = 3.6
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 15/37 (40%)
Query: 235 LSGGEKQRVAMA---------RLFYHRPQFAILDECT 262
LSGGE QRV +A R Y ILDE T
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLY------ILDEPT 574
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.0 bits (63), Expect = 4.0
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 90 LRSGGLGFDSRWGRSFFDYM 109
L F +G S Y
Sbjct: 132 LGPERPAFADIFGSSLDAYF 151
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.2 bits (64), Expect = 4.2
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 15/37 (40%)
Query: 235 LSGGEKQRVAMA---------RLFYHRPQFAILDECT 262
LSGGE QRV +A R Y ILDE T
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLY------ILDEPT 876
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 28.3 bits (64), Expect = 4.3
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 15/37 (40%)
Query: 235 LSGGEKQRVAMA---------RLFYHRPQFAILDECT 262
LSGGE QRV +A R Y ILDE T
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVY------ILDEPT 894
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 12 RMLVKLAEAIGRLVLAGRE-----MTR--LAGF--TARMTEIIRVLKDL-NEGV 55
L+ L G+ G + +T L A + + R++ L E V
Sbjct: 146 SQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKV 199
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 27.3 bits (61), Expect = 6.2
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 90 LRSGGLGFDSRWGRSFFDYM 109
+R+G ++S +G+ F++ +
Sbjct: 131 IRTGRPTYESIYGKPFYEDL 150
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 27.1 bits (61), Expect = 7.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDE 260
LSGG+ + V + R P+ ++DE
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDE 179
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 27.2 bits (61), Expect = 7.1
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 45 IRVLKDLNEGVYVRTMV----TQNGVDSLSEGIFIYRNNLRGRL---GITLGLRSGGLGF 97
+ + +GVY T + + + + RG L + +R+G +
Sbjct: 65 VGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAY 124
Query: 98 DSRWGRSFFDYM 109
R+G SF++ +
Sbjct: 125 PVRYGTSFWEDL 136
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 27.1 bits (61), Expect = 7.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 15/37 (40%)
Query: 235 LSGGEKQRVAMA---------RLFYHRPQFAILDECT 262
LSGGE QR+ +A Y +LDE T
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVY------VLDEPT 761
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 27.0 bits (60), Expect = 7.9
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 90 LRSGGLGFDSRWGRSFFDYM 109
+R+G + R+GR F++ +
Sbjct: 130 VRTGRPAYAGRYGRPFWEDL 149
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 26.9 bits (60), Expect = 8.1
Identities = 6/39 (15%), Positives = 8/39 (20%), Gaps = 1/39 (2%)
Query: 14 LVKLAEAIGR-LVLAGREMTRLAGFTARMTEIIRVLKDL 51
K+ E R +VL L
Sbjct: 268 FAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGK 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.438
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,827,981
Number of extensions: 298825
Number of successful extensions: 799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 94
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.6 bits)