RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11400
(298 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 80.6 bits (199), Expect = 2e-18
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R ++ V Q + T+++ ++ + TD ++ E + +I+N +G
Sbjct: 91 RNQIGLVQQDNILFSDTVKENILLG-------RPTATDEEVVEAAKMANAHDFIMNLPQG 143
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
+DT V + LSGG+KQR+++AR+F + P ILDE TSA+ ++ E + E +
Sbjct: 144 YDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 203
Query: 282 ITLFTVSHRKS 292
T V+HR S
Sbjct: 204 RTTLIVAHRLS 214
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 75.3 bits (185), Expect = 1e-16
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
R ++ V Q ++ T+ + + Y T+E + + E + +I + G
Sbjct: 88 RNQVALVSQNVHLFNDTVANNIAYARTEE------YSREQIEEAARMAYAMDFINKMDNG 141
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
DT + + +LSGG++QR+A+AR ILDE TSA+ + E ++ E+
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 201
Query: 282 ITLFTVSHRKSL 293
T ++HR S
Sbjct: 202 RTSLVIAHRLST 213
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 72.6 bits (178), Expect = 2e-15
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 153 LWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
G + G++ + Q ++ GT+++ +I+ + + ++
Sbjct: 85 ELEASEGIIKH--SGRVSFCSQFSWIMPGTIKENIIFGVS--------YDEYRYKSVVKA 134
Query: 213 VQL-GYILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
QL I + +T + + LSGG++ R+++AR Y +LD + V E
Sbjct: 135 CQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 271 GSMYEYCRE---VGITLFTVSHRKS 292
++E C T V+ +
Sbjct: 195 EQVFESCVCKLMANKTRILVTSKME 219
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 71.1 bits (174), Expect = 5e-15
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
++ V Q P + +L++ + Y T++ +++ A + +I +G+
Sbjct: 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHS-----FISGLPQGY 141
Query: 226 DT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREV 280
DT V + LSGG++Q VA+AR +P ILD+ TSA+ + VE +YE
Sbjct: 142 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201
Query: 281 GITLFTVSHRKSL 293
++ ++ SL
Sbjct: 202 SRSVLLITQHLSL 214
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 66.8 bits (163), Expect = 1e-13
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R ++ +V Q + GT+R+ + Y + + DL ++ N
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF-----ARSFVENMPDQL 129
Query: 226 DT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GI 282
+T V + +SGG++QR+A+AR F P+ +LDE T+++ + E + + + G
Sbjct: 130 NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGR 189
Query: 283 TLFTVSHRKS 292
T ++HR S
Sbjct: 190 TTLVIAHRLS 199
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 65.3 bits (159), Expect = 4e-13
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKGWDTVA 229
V Q + ++ D + G++ + + +I +G++T+
Sbjct: 81 VVLQDNVLLNRSIIDNISLA-------NPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 230 DWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFT 286
LSGG++QR+A+AR + P+ I DE TSA+ + E + ++ G T+
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 193
Query: 287 VSHRKSL 293
++HR S
Sbjct: 194 IAHRLST 200
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 58.3 bits (141), Expect = 1e-10
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 161 VTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219
+TK R K+ +V Q+ + L T + V P +I K E ++ L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELP-----LIFKYRGAMSGEERRKRAL--ECL 129
Query: 220 NREKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-- 276
+ + A+ + LSGG++QRVA+AR + P + D+ T A+ + +
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 277 --CREVGITLFTVSH 289
E G T+ V+H
Sbjct: 190 KLNEEDGKTVVVVTH 204
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 56.1 bits (135), Expect = 4e-10
Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 151 DQLWPLFGGTVTKPPRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEY 209
+ ++ G +GK+F++P+ + ++ D + + + ++ +
Sbjct: 54 LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV---ASLYGVKVNKNEIMDA 110
Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
L+ V++ + + LS G +RV +A + +LD+ A+ D
Sbjct: 111 LESVEV----------LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 270 EGSMY----EYCREVGITLFTVSH 289
+ + E +E GI + +
Sbjct: 161 KHKVLKSILEILKEKGIVIISSRE 184
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 55.9 bits (135), Expect = 7e-10
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 171 YVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA 229
V Q + T+ + + +P + + I D + + +Q+ +LNR
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI-DKRVRWAAELLQIEELLNR-------- 132
Query: 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLF 285
+ LSGG++QRVA+AR P ++DE S + + +M +++ +T
Sbjct: 133 -YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191
Query: 286 TVSH 289
V+H
Sbjct: 192 YVTH 195
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 53.7 bits (129), Expect = 5e-09
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 12/150 (8%)
Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGIT 202
+ L +D + + R +L V Q + T+ + V+ + + K
Sbjct: 66 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA 125
Query: 203 DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
+YL KV + + + LSGG++QRV++AR P + DE T
Sbjct: 126 RERALKYLAKVGIDERAQGK--------YPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 263 SAVSVDVEGSMYEYCREV---GITLFTVSH 289
SA+ ++ G + +++ G T+ V+H
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTH 207
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 52.6 bits (126), Expect = 9e-09
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 163 KPPRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221
R ++ + Q ++ T+ V P ++ + + +TE L V LG +
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV-KRRVTELLSLVGLGDKHDS 136
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV- 280
+ LSGG+KQRVA+AR P+ + DE TSA+ S+ E +++
Sbjct: 137 ---------YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 281 ---GITLFTVSH 289
G+T+ ++H
Sbjct: 188 RRLGLTILLITH 199
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 52.2 bits (125), Expect = 1e-08
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E + + L +LNR LSGG++QRVA+ R +PQ ++DE S +
Sbjct: 122 EVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
Query: 268 DVEGSMYEYCREV----GITLFTVSH 289
+ M +++ G+T V+H
Sbjct: 173 KLRVRMRAELKKLQRQLGVTTIYVTH 198
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 51.1 bits (122), Expect = 3e-08
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
IL K LSGG+ + V + R P+ ++DE + V+ + ++ +
Sbjct: 134 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193
Query: 278 REV---GITLFTVSH 289
E+ GIT + H
Sbjct: 194 LELKAKGITFLIIEH 208
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 50.3 bits (120), Expect = 6e-08
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
LSGGE+Q +A+ R RP+ ++DE + ++ + ++E +++ G T+ V
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 48.4 bits (115), Expect = 2e-07
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 9/122 (7%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
R + Y+P+ + + + + + L
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL---------G 124
Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
+ + D + S G +++ +AR P+ AILDE TS + V + + ++
Sbjct: 125 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 184
Query: 286 TV 287
T+
Sbjct: 185 TI 186
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 48.0 bits (114), Expect = 3e-07
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 162 TKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221
T P + V Q + + + K +K + + + + + +QL ++L+R
Sbjct: 67 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR 126
Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV- 280
LSGG++QRVA+ R P +LDE S + + M +
Sbjct: 127 ---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177
Query: 281 ---GITLFTVSH 289
G T+ V+H
Sbjct: 178 KRLGRTMIYVTH 189
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 41.8 bits (98), Expect = 4e-05
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 20/145 (13%)
Query: 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215
G + KL + + + + + D TE L V
Sbjct: 57 FAGQPLEAWSATKL-----ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 111
Query: 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH-------RPQFAILDECTSAVSVD 268
L D + + LSGGE QRV +A + Q +LDE +++ V
Sbjct: 112 ALAL-----DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 269 VEGSMYEYCREV---GITLFTVSHR 290
+ ++ + + G+ + SH
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHD 191
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 40.0 bits (93), Expect = 1e-04
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 191 HTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY 250
++K + + + +++ ++L+R LSGGE+QRVA+AR
Sbjct: 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDR---------NPLTLSGGEQQRVALARALV 143
Query: 251 HRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
P+ +LDE SA+ + + E + +T+ ++H
Sbjct: 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 40.1 bits (93), Expect = 1e-04
Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 13/146 (8%)
Query: 148 TLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLT 207
D+L G + P K+ V Q + + I + K +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
E + + + ++LN + LSG ++QRVA+AR P +LDE S +
Sbjct: 123 EVAKILDIHHVLNH---------FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 268 DVEGSMYEYCREV----GITLFTVSH 289
+ S +EV G+TL VSH
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSH 199
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 36.9 bits (85), Expect = 0.001
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
G + D LSGGE+QRVA+AR +P+ +LDE SAV + +G + E R V
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 281 --GITLFTVSH 289
+ + V+H
Sbjct: 175 EFDVPILHVTH 185
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 34.7 bits (78), Expect = 0.010
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 224 GWDTVADWIDVLSGGEKQRV------AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
W+ + LSGGE+ + AM+ ILDE T + + +
Sbjct: 191 VWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 250
Query: 278 REV---GITLFTVSHRKSL 293
+ VSH + L
Sbjct: 251 ERYLKKIPQVILVSHDEEL 269
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB
{Streptomyces purpurascens [TaxId: 1924]}
Length = 256
Score = 27.2 bits (59), Expect = 2.5
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 90 LRSGGLGFDSRWGRSFFDYM 109
+R+G + R+GR F++ +
Sbjct: 29 VRTGRPAYAGRYGRPFWEDL 48
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier
protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId:
1902]}
Length = 86
Score = 25.7 bits (56), Expect = 2.5
Identities = 16/80 (20%), Positives = 18/80 (22%), Gaps = 11/80 (13%)
Query: 60 MVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLL 119
M T D L R L G T G G D F D + +
Sbjct: 1 MATLLTTDDL-------RRALVECAGETDGTDLSGDFLD----LRFEDIGYDSLALMETA 49
Query: 120 WPLFGGTVTKPPRGKLFYVP 139
L P V
Sbjct: 50 ARLESRYGVSIPDDVAGRVD 69
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 26.8 bits (58), Expect = 2.9
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 241 QRVAMARLFYHRPQFA-ILDECTSAVSVDV 269
Q + P A + + A+ +D+
Sbjct: 13 QTPGFLTDWLALPGAADRVAAWSDAIGLDL 42
>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus
subtilis [TaxId: 1423]}
Length = 128
Score = 26.2 bits (58), Expect = 3.2
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215
++G TKP + + LG+LR++V+ TK +++ + L+
Sbjct: 12 MYGPLETKPDE-------RHLF--LGSLRERVVLALTKGQVLRSKPY-KEAEHELKNSHN 61
Query: 216 GYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV---SVDVEG 271
+ +N E + + + +I + S ++ L +H P I+ AV + ++
Sbjct: 62 VTLLINGELQYQSYSSYIQMASRYGVPFKIVSDLQFHTP-LGIVIAADIAVNRELIYIQD 120
Query: 272 SMYE 275
+Y
Sbjct: 121 DIYN 124
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase
{Streptomyces peucetius [TaxId: 1950]}
Length = 253
Score = 26.2 bits (56), Expect = 4.4
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 90 LRSGGLGFDSRWGRSFFDYM 109
+R+G ++S +G+ F++ +
Sbjct: 28 IRTGRPTYESIYGKPFYEDL 47
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid
3/5-O-methyltransferase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 243
Score = 26.3 bits (57), Expect = 4.8
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 90 LRSGGLGFDSRWGRSFFDYM 109
+ GG+ F+ +G + F+Y
Sbjct: 28 VLDGGIPFNKAYGMTAFEYH 47
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Length = 74
Score = 24.4 bits (53), Expect = 5.8
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 49 KDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSG 93
+++N G +VR ++G + EG + L + L L +G
Sbjct: 9 RNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENG 53
>d2auwa2 d.331.1.1 (A:4-87) Hypothetical protein NE0471 N-terminal
domain {Nitrosomonas europaea [TaxId: 915]}
Length = 84
Score = 24.0 bits (52), Expect = 9.5
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 236 SGGEKQRVAMARLFYHRPQFAIL--DECTSAVSVDVEG 271
S GE V + + P A + E + V +
Sbjct: 22 STGEVLEVDVGDILRKIPDLAPILDPEAFARVHIAEWE 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.438
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,147,953
Number of extensions: 54135
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 30
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.1 bits)