BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11402
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KJK|A Chain A, Solution Structure Of The Second Domain Of The Listeria
           Protein Lin2157, Northeast Structural Genomics
           Consortium Target Lkr136b
          Length = 100

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 93  YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133
           YI+S+ + ++ +I +  GN+ E+ ++     KL ++  KGT
Sbjct: 47  YIHSKKVGDTVKIKYKHGNKNEEASI-----KLTAIDKKGT 82


>pdb|3I1E|A Chain A, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
           Protein (Lin2157) From Listeria Innocua, Northeast
           Structural Genomics Consortium Target Lkr136c
 pdb|3I1E|B Chain B, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
           Protein (Lin2157) From Listeria Innocua, Northeast
           Structural Genomics Consortium Target Lkr136c
          Length = 90

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 93  YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133
           YI+S+ + ++ +I +  GN+ E+ ++     KL ++  KGT
Sbjct: 42  YIHSKKVGDTVKIKYKHGNKNEEASI-----KLTAIDKKGT 77


>pdb|2Y8K|A Chain A, Structure Of Ctgh5-Cbm6, An Arabinoxylan-Specific Xylanase
          Length = 491

 Score = 26.9 bits (58), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 38  LDIVIYVYRLTSTLGYQTPTVMLGYLVVSG 67
           +D+ I VYR+  T   +TP ++  Y V  G
Sbjct: 157 VDMEIDVYRIIRTYAPETPVLLFSYAVFGG 186


>pdb|2G1L|A Chain A, Crystal Structure Of The Fha Domain Of Human Kinesin
           Family Member C
          Length = 104

 Score = 26.6 bits (57), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 73  LRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQ 112
           + +P G + VT +  EG   Y+N +L+  +E +    GN+
Sbjct: 54  IPQPDGEVVVTLEPCEGAETYVNGKLV--TEPLVLKSGNR 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,853,458
Number of Sequences: 62578
Number of extensions: 137506
Number of successful extensions: 312
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)