BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11402
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3
PE=1 SV=1
Length = 659
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 104/127 (81%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
M NLDNRIANPDQLLT D++KFC+ DLYSN+ KP LDIV+Y+++LTS +G Q P M+
Sbjct: 175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234
Query: 61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
YLVVSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK TV +
Sbjct: 235 AYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHS 294
Query: 121 AFNKLVS 127
F KLV
Sbjct: 295 VFRKLVE 301
>sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3
PE=1 SV=2
Length = 659
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 103/127 (81%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
M NLDNRIANPDQLLT D++KFC+ DLYSN+ KP LDIV+Y+++LTS +G Q P M+
Sbjct: 175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234
Query: 61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
YL+VSG+ LT LRRP G+MT+ EQK EGE+RY+NSRLI+NSEEIAFY GN+REK T+ +
Sbjct: 235 AYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHS 294
Query: 121 AFNKLVS 127
F KLV
Sbjct: 295 VFRKLVE 301
>sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus
GN=Abcd3 PE=1 SV=3
Length = 659
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 103/126 (81%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
M NLDNRIANPDQLLT D++KFC+ DLYSN+ KP LDIV+Y+++LTS +G Q P M+
Sbjct: 175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234
Query: 61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
YL+VSG+ LT LRRP G+MT+ EQK EGE+R++NSRLI+NSEEIAFY GN+REK T+ +
Sbjct: 235 AYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHS 294
Query: 121 AFNKLV 126
F KLV
Sbjct: 295 VFRKLV 300
>sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum
GN=abcD2 PE=3 SV=1
Length = 741
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 81/120 (67%)
Query: 6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVV 65
+RI N DQ +T+D+++FC+ + LY+ + KP LD+V++ +L +G+ +P +M Y +V
Sbjct: 218 DRIDNADQRVTSDIEQFCNSMSSLYTTLFKPFLDLVLFTRKLVVVMGWGSPLLMFSYFIV 277
Query: 66 SGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKL 125
SG + + P GR+T + +LEG +R ++ RLI+N+EEIAFY G+++E+ + +F +
Sbjct: 278 SGFLKKLIMPPFGRLTAKQSELEGNYRTVHQRLITNAEEIAFYDGSRKERQIINLSFGDI 337
>sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1
PE=1 SV=1
Length = 736
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRL-----TSTLGYQT 55
+SN+D R+ NPDQ LT D+ F LYSN+ KP+LD+ + Y L + G
Sbjct: 183 VSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGTAW 242
Query: 56 PTVMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
P+ + G +V ++ +L G + E + +GE RY++SR+++NSEEIAFY G++ E
Sbjct: 243 PSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVE 302
Query: 115 KLTVLAAFNKLVS 127
+ ++ L S
Sbjct: 303 LALLQHSYQDLAS 315
>sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1
PE=1 SV=2
Length = 745
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRL-----TSTLGYQT 55
+SN+D R+ NPDQ LT D+ F LYSN+ KP+LD+ + Y L + G
Sbjct: 183 VSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGTAW 242
Query: 56 PTVMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
P+ + G +V ++ +L G + E + +GE RY++SR+++NSEEIAFY G++ E
Sbjct: 243 PSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVE 302
Query: 115 KLTVLAAFNKLVS 127
+ ++ L S
Sbjct: 303 LALLQRSYQDLAS 315
>sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2
PE=1 SV=1
Length = 740
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 3 NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----TPT 57
N+D R+ANPDQ LT D+ F LYSN+ KP+LD+++ Y L T + PT
Sbjct: 198 NMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVMLTSYTLIQTATSRGASPIGPT 257
Query: 58 VMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
++ G +V + +L G++ E +G RY++SR+I+N EEIAFY+G++ E
Sbjct: 258 LLAGLVVYATAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVE 315
>sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1
PE=1 SV=1
Length = 1337
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVM- 59
+S++D RI +P+Q + +D+ +F +DL + V D ++Y +RL S Y +P +
Sbjct: 198 ISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILYAWRLCS---YASPKYIF 254
Query: 60 --LGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLT 117
L Y++ +G + + G++ EQ+LEGE+R ++SRL ++SE IAFY G RE+
Sbjct: 255 WILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGETREESH 314
Query: 118 VLAAFNKLVS 127
+ F LVS
Sbjct: 315 IQQKFKNLVS 324
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVI 69
+ DQ LT DL+K + L + + KP +DI+ + +R+ G + ++ Y+++
Sbjct: 861 DADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLG--- 917
Query: 70 LTHLRRPA---GRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLV 126
L LRR A G + EQ+LEG+FR+++ RL +++E IAF+ G REK V F L+
Sbjct: 918 LGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFFGGGAREKAMVDKKFRALL 977
Query: 127 SMS 129
S
Sbjct: 978 DHS 980
>sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2
PE=1 SV=1
Length = 741
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 3 NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----TPT 57
N+D R+ANPDQ LT D+ F LYSN+ KP+LD+++ Y L T + PT
Sbjct: 198 NMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPT 257
Query: 58 VMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
++ G +V + +L G + E +G RY++SR+I+N EEIAFY+G++ E
Sbjct: 258 LLAGLVVYATAKVLKACSPKFGSLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVE 315
>sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus
GN=Abcd2 PE=2 SV=1
Length = 741
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 3 NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----TPT 57
N+D R+ANPDQ LT D+ F LYSN+ KP+LD+++ Y L T + PT
Sbjct: 198 NMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPT 257
Query: 58 VMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
++ G +V + +L G + E +G RY++SR+I+N EEIAFY+G++ E
Sbjct: 258 LLAGLVVYATAKVLKACSPKFGTLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVE 315
>sp|P41909|PXA1_YEAST Peroxisomal long-chain fatty acid import protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PXA1 PE=1
SV=2
Length = 870
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSG 67
I N D +T D+ KFCD +++NI KPV+D++ + L LG + ++G
Sbjct: 311 IKNIDNSITNDVAKFCDATCSVFANIAKPVIDLIFFSVYLRDNLGTVGVAGIFVNYFITG 370
Query: 68 VILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLV 126
IL P G++ +G++ + +I+NSEEIAFYQG E+ V ++ L+
Sbjct: 371 FILRKYTPPLGKLAGERSASDGDYYNYHLNMINNSEEIAFYQGTAVERTKVKELYDVLM 429
>sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4
PE=1 SV=1
Length = 606
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%)
Query: 4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYL 63
L + I NPDQ ++ D+++FC + + S + +V Y Y+ + G+ P + GY
Sbjct: 135 LRDDIDNPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGWLGPVSIFGYF 194
Query: 64 VVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKL 116
++ V+ L P V ++KLEG+FR+ + ++ N+E AFY+ E +
Sbjct: 195 ILGTVVNKTLMGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHVEHM 247
>sp|Q54W20|ABCD3_DICDI ABC transporter D family member 3 OS=Dictyostelium discoideum
GN=abcD3 PE=3 SV=1
Length = 750
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%)
Query: 4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYL 63
D+RI NPDQ +T+D+D F + + + S + +V Y Y +T+ + P ++ GY
Sbjct: 170 FDDRIDNPDQRITSDIDNFTTLLSSIVSQCITGPMVVVYYTYLCYTTIDWYAPLIVYGYF 229
Query: 64 VVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFY 108
+ I + P + + KLEG+FRY++ R+ + SE IA Y
Sbjct: 230 FLGYFINKLVMSPMVSINYLQDKLEGDFRYLHQRIRNFSESIALY 274
>sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4 OS=Mus musculus GN=Abcd4
PE=2 SV=2
Length = 606
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%)
Query: 4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYL 63
L + I NPDQ ++ D+++FC + + S + + Y Y+ + G+ P + GY
Sbjct: 135 LRDDIDNPDQRISQDVERFCRQLSSVTSKLIISPFTLTYYTYQCFQSTGWLGPVSIFGYF 194
Query: 64 VVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKL 116
+V ++ L P V ++KLEG+FR+ + ++ N+E AFY+ E +
Sbjct: 195 IVGTMVNKTLMGPIVTKLVQQEKLEGDFRFKHMQIRVNAEPAAFYRAGLVEHM 247
>sp|Q54W19|ABCD1_DICDI ABC transporter D family member 1 OS=Dictyostelium discoideum
GN=abcD1 PE=3 SV=1
Length = 734
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYL 63
D+RI NPDQ +T+D+D F + + S + +V Y Y +T+ + P ++ G+
Sbjct: 159 FDDRIDNPDQRITSDIDNFTTLLASIVSQCITGPMVVVYYTYLCYTTIDWYAPLIVYGFF 218
Query: 64 VVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFY 108
+ +I + P + + KLEG+FR ++ R+ + SE IA Y
Sbjct: 219 FLGYLINKLVMSPMVSINYLQDKLEGDFRSLHQRIRNFSESIALY 263
>sp|Q57335|Y036_HAEIN Uncharacterized ABC transporter ATP-binding protein HI_0036
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=HI_0036 PE=3 SV=1
Length = 592
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTS------TLGYQTPT 57
L + NPDQ + D+ + L + + V ++ Y L LG + P
Sbjct: 154 LSENLDNPDQRIQQDVQSYVKTTLSLSTGVIDAVTSMISYTILLWGLAGPMIVLGVEIPH 213
Query: 58 VML----GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQR 113
+M+ GY++ + +I L RP + ++L +RY R+ +E IAFY G +
Sbjct: 214 MMVFLVFGYVIFTTLIAFWLGRPLISLNFINERLNANYRYSLIRIKEYAESIAFYAGEKV 273
Query: 114 EKLTVLAAFNKLVSMSW 130
EK + FN ++ W
Sbjct: 274 EKNQLYQQFNAVIHNMW 290
>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding protein sll0182
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0182 PE=3 SV=1
Length = 661
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIY---VYRLTSTLGYQTPTVMLGYLV 64
I NPDQ +T D+ F + D +I +L ++ + +Y ++ TL + ++GY V
Sbjct: 221 IDNPDQRITQDIQSFTGVTLDFLLDILDSILTLISFTAILYTISQTLMWG----LIGYAV 276
Query: 65 VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTV 118
V+ + R+ + +LE FRY R+ N+E IAFY+G E+ V
Sbjct: 277 FGTVVAIAIGTRLIRINYEQLRLEANFRYGLVRVRDNAESIAFYRGEGLERKQV 330
>sp|P34230|PXA2_YEAST Peroxisomal long-chain fatty acid import protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PXA2 PE=1
SV=1
Length = 853
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 15 LTADLDKFCDMFTDLYSNICKPVLDIVIYVYRL----TSTLGYQTPTVMLGYLVVSGVIL 70
LT D+ F + L + + KP+LD+++ ++L TS +G T+ LG +V + L
Sbjct: 231 LTKDIYTFSMNSSLLLNQLLKPMLDLILCSFKLLTSNTSVMG--EGTLALGLIVYASNSL 288
Query: 71 THLRRPA-GRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLV 126
L +P R+T+ LE FR ++S L S++EEIA +G +RE V +F +LV
Sbjct: 289 LKLIQPNFTRLTMASASLESWFRSLHSNLHSSNEEIALLRGQKRELENVDYSFYRLV 345
>sp|P45221|Y1467_HAEIN Uncharacterized ABC transporter ATP-binding protein HI_1467
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=HI_1467 PE=3 SV=1
Length = 589
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVI 69
N DQ + D +F + + VL + + L S G T + G+ + GV+
Sbjct: 159 NIDQRIEQDAREFITSTVQIVRGVINSVLTTIEFTIILWSLSGVLT---LFGFNIEKGVV 215
Query: 70 L-------------THLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKL 116
+ RP ++ T++KL G++RY R+ N+E IAFY G +E+
Sbjct: 216 FFIYAFIIFATLMSVWIGRPLIKLNFTKEKLNGDYRYSLIRVRDNAESIAFYNGEPKEQT 275
Query: 117 TVLAAFNKLVSMSW 130
+ F +++ W
Sbjct: 276 FLQHQFRQIIHNRW 289
>sp|Q50614|Y1819_MYCTU Uncharacterized ABC transporter ATP-binding protein Rv1819c/MT1867
OS=Mycobacterium tuberculosis GN=Rv1819c PE=3 SV=1
Length = 639
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 26/147 (17%)
Query: 4 LDNRIANPDQLLTADLDKFCD-----------------MFTDLYSNICKPVLDIVIYVYR 46
+D I NPDQ + D+D F +F + S I V+ ++
Sbjct: 177 IDETIDNPDQRIQQDVDIFTAGAGGTPNAPSNGTASTLLFGAVQSIIS--VISFTAILWN 234
Query: 47 LTSTL---GYQTPTVM----LGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLI 99
L+ TL G P M L Y+ V+ VI + RP ++ +KL FRY RL
Sbjct: 235 LSGTLNIFGVSIPRAMFWTVLVYVFVATVISFIIGRPLIWLSFRNEKLNAAFRYALVRLR 294
Query: 100 SNSEEIAFYQGNQREKLTVLAAFNKLV 126
+E + FY+G + E + F ++
Sbjct: 295 DAAEAVGFYRGERVEGTQLQRRFTPVI 321
>sp|Q6NLC1|AB2D_ARATH ABC transporter D family member 2, chloroplastic OS=Arabidopsis
thaliana GN=ABCC2 PE=1 SV=1
Length = 706
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSG 67
I NPDQ L DL F + +D++ + + T+ V+L Y
Sbjct: 183 IDNPDQRLVDDLSSFTGTALSFSLTLVNATIDLISFS-NILFTIYPPLFLVLLLYSFGGT 241
Query: 68 VILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAF 122
I L + + ++K E +FRY R+ N+E IAFY G Q E +L F
Sbjct: 242 AISVFLGKGLVNLNFLQEKKEADFRYSLVRVRENAESIAFYGGEQNEMQLLLQRF 296
>sp|B9DV92|SYGB_STRU0 Glycine--tRNA ligase beta subunit OS=Streptococcus uberis (strain
ATCC BAA-854 / 0140J) GN=glyS PE=3 SV=1
Length = 679
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 94 INSRLISNSEEIAFY--------QGNQREKLTVLAAFNKLV 126
INS L N EEIA Y +GN +EK+ L A N ++
Sbjct: 596 INSDLFENDEEIALYKAIENLNLEGNAKEKVEQLFALNDVI 636
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,151,583
Number of Sequences: 539616
Number of extensions: 1809158
Number of successful extensions: 3685
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3650
Number of HSP's gapped (non-prelim): 29
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)