Query psy11402
Match_columns 135
No_of_seqs 114 out of 874
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06472 ABC_membrane_2: ABC t 100.0 5.3E-47 1.1E-51 301.4 13.8 134 1-134 118-251 (281)
2 KOG0060|consensus 100.0 1E-39 2.2E-44 277.2 8.6 133 1-133 174-306 (659)
3 COG4178 ABC-type uncharacteriz 100.0 2.1E-38 4.6E-43 272.2 13.1 129 6-134 145-287 (604)
4 PRK12369 putative transporter; 100.0 2.1E-35 4.6E-40 239.8 13.7 124 4-134 109-243 (326)
5 PRK11098 microcin B17 transpor 100.0 7.1E-34 1.5E-38 236.3 14.0 121 6-134 185-317 (409)
6 KOG0064|consensus 99.9 2.4E-27 5.2E-32 200.9 12.6 133 1-133 209-344 (728)
7 TIGR00954 3a01203 Peroxysomal 99.8 4.9E-19 1.1E-23 155.0 14.6 131 3-133 189-319 (659)
8 PF05992 SbmA_BacA: SbmA/BacA- 99.8 4.4E-18 9.5E-23 137.0 11.7 120 6-133 103-234 (315)
9 COG1133 SbmA ABC-type long-cha 99.6 1.1E-15 2.3E-20 122.9 8.8 120 5-132 180-311 (405)
10 PF00664 ABC_membrane: ABC tra 98.3 2.6E-05 5.6E-10 58.1 13.2 119 13-132 102-220 (275)
11 TIGR02203 MsbA_lipidA lipid A 98.2 2.3E-05 5E-10 67.3 11.9 123 9-132 111-233 (571)
12 TIGR00958 3a01208 Conjugate Tr 98.2 3.4E-05 7.5E-10 68.5 12.3 123 8-131 257-379 (711)
13 TIGR02204 MsbA_rel ABC transpo 98.0 8.4E-05 1.8E-09 64.0 11.5 120 12-132 118-237 (576)
14 PRK11176 lipid transporter ATP 97.9 0.00031 6.7E-09 60.6 12.3 121 11-132 124-244 (582)
15 PRK13657 cyclic beta-1,2-gluca 97.7 0.00083 1.8E-08 58.2 11.8 123 8-131 112-234 (588)
16 PRK11160 cysteine/glutathione 97.6 0.0011 2.3E-08 57.6 12.2 119 13-132 121-240 (574)
17 PRK10789 putative multidrug tr 97.6 0.0013 2.8E-08 57.0 12.2 124 8-131 92-215 (569)
18 TIGR01192 chvA glucan exporter 97.5 0.0018 3.9E-08 56.4 12.0 120 11-131 115-234 (585)
19 TIGR02857 CydD thiol reductant 97.5 0.0021 4.5E-08 55.0 12.1 121 10-131 102-222 (529)
20 TIGR02868 CydC thiol reductant 97.5 0.002 4.4E-08 55.0 12.0 122 9-131 110-232 (529)
21 TIGR03375 type_I_sec_LssB type 97.5 0.0017 3.6E-08 57.5 11.4 118 13-132 247-364 (694)
22 TIGR01193 bacteriocin_ABC ABC- 97.5 0.0019 4.2E-08 57.2 11.6 116 14-131 258-373 (708)
23 TIGR03796 NHPM_micro_ABC1 NHPM 97.4 0.0023 5.1E-08 56.7 11.9 117 13-131 255-371 (710)
24 PRK11174 cysteine/glutathione 97.4 0.0035 7.5E-08 54.3 11.7 119 12-131 123-241 (588)
25 TIGR01846 type_I_sec_HlyB type 97.2 0.0058 1.3E-07 54.1 12.1 117 13-131 240-356 (694)
26 TIGR03797 NHPM_micro_ABC2 NHPM 97.1 0.0097 2.1E-07 52.6 11.7 118 13-132 237-354 (686)
27 PRK10790 putative multidrug tr 97.0 0.014 3E-07 50.7 11.8 120 10-130 123-242 (592)
28 TIGR01842 type_I_sec_PrtD type 96.4 0.08 1.7E-06 45.6 12.0 118 12-131 101-219 (544)
29 PRK10522 multidrug transporter 96.3 0.079 1.7E-06 45.7 11.8 97 9-107 105-201 (547)
30 TIGR01194 cyc_pep_trnsptr cycl 96.3 0.074 1.6E-06 46.1 11.5 114 12-127 113-228 (555)
31 PLN03232 ABC transporter C fam 96.2 0.095 2.1E-06 50.7 12.3 116 13-130 402-517 (1495)
32 TIGR00957 MRP_assoc_pro multi 95.7 0.18 3.9E-06 48.9 11.9 114 12-127 418-531 (1522)
33 PTZ00265 multidrug resistance 95.2 0.45 9.8E-06 46.1 12.8 114 14-128 159-272 (1466)
34 TIGR01271 CFTR_protein cystic 95.1 0.37 8.1E-06 46.7 12.0 110 13-124 183-292 (1490)
35 PLN03130 ABC transporter C fam 95.0 0.42 9.2E-06 46.8 12.3 110 13-124 402-511 (1622)
36 KOG0058|consensus 94.7 0.56 1.2E-05 42.3 11.3 119 12-131 248-366 (716)
37 COG1132 MdlB ABC-type multidru 93.8 1.7 3.6E-05 37.6 12.2 119 10-129 110-228 (567)
38 PTZ00243 ABC transporter; Prov 92.1 2.3 5E-05 41.7 11.6 107 13-121 348-454 (1560)
39 TIGR01271 CFTR_protein cystic 92.1 3 6.5E-05 40.7 12.3 115 13-128 986-1100(1490)
40 PTZ00243 ABC transporter; Prov 91.5 3.6 7.9E-05 40.3 12.2 113 13-130 1059-1175(1560)
41 KOG0055|consensus 90.6 3.7 8.1E-05 39.4 10.9 119 9-128 128-246 (1228)
42 TIGR00957 MRP_assoc_pro multi 87.2 11 0.00024 37.0 11.8 112 13-128 1066-1180(1522)
43 COG4987 CydC ABC-type transpor 85.9 16 0.00035 32.4 11.1 111 14-131 120-237 (573)
44 PTZ00265 multidrug resistance 85.8 18 0.00038 35.6 12.4 115 13-131 929-1061(1466)
45 COG2274 SunT ABC-type bacterio 85.1 20 0.00044 32.6 11.8 88 42-130 283-370 (709)
46 KOG0054|consensus 79.2 43 0.00094 32.9 12.1 98 14-113 304-401 (1381)
47 PLN03232 ABC transporter C fam 76.8 50 0.0011 32.5 12.0 32 13-44 1011-1042(1495)
48 PLN03130 ABC transporter C fam 73.2 66 0.0014 32.1 11.9 33 13-45 1014-1046(1622)
49 PRK06569 F0F1 ATP synthase sub 70.7 29 0.00063 25.6 7.0 68 59-126 17-108 (155)
50 COG3105 Uncharacterized protei 56.7 73 0.0016 23.1 7.1 64 64-131 20-84 (138)
51 PF01024 Colicin: Colicin pore 56.2 64 0.0014 24.7 6.7 52 21-78 129-180 (187)
52 PF06645 SPC12: Microsomal sig 52.8 60 0.0013 20.9 6.7 16 8-23 1-16 (76)
53 PF07332 DUF1469: Protein of u 52.4 72 0.0016 21.7 8.0 30 15-44 27-56 (121)
54 PF06295 DUF1043: Protein of u 51.8 70 0.0015 22.6 6.0 15 116-130 60-74 (128)
55 COG4615 PvdE ABC-type sideroph 50.7 98 0.0021 27.0 7.5 117 15-133 111-242 (546)
56 PF11712 Vma12: Endoplasmic re 50.3 90 0.002 22.2 8.0 41 9-50 62-102 (142)
57 PRK09174 F0F1 ATP synthase sub 47.5 34 0.00074 26.2 4.1 49 35-91 44-93 (204)
58 PRK11677 hypothetical protein; 46.6 1.1E+02 0.0024 22.1 8.0 48 82-129 29-77 (134)
59 PF07069 PRRSV_2b: Porcine rep 45.3 78 0.0017 20.0 6.5 30 21-50 10-39 (73)
60 PF08566 Pam17: Mitochondrial 44.9 1.3E+02 0.0027 22.8 6.6 76 24-99 41-129 (173)
61 COG4987 CydC ABC-type transpor 42.6 2E+02 0.0044 25.7 8.4 81 20-101 9-98 (573)
62 COG5336 Uncharacterized protei 40.1 71 0.0015 22.5 4.3 40 28-68 47-86 (116)
63 PF01956 DUF106: Integral memb 39.8 1.2E+02 0.0027 21.9 6.0 60 58-117 18-78 (168)
64 CHL00182 tatC Sec-independent 36.9 51 0.0011 26.0 3.7 31 6-41 13-43 (249)
65 PRK14472 F0F1 ATP synthase sub 35.1 55 0.0012 24.0 3.4 39 59-97 25-64 (175)
66 PRK14219 camphor resistance pr 33.5 94 0.002 22.0 4.3 51 30-80 69-122 (132)
67 PRK09470 cpxA two-component se 29.8 2.6E+02 0.0056 22.7 6.9 53 69-132 186-239 (461)
68 PF10166 DUF2368: Uncharacteri 29.7 1.3E+02 0.0029 21.5 4.5 33 74-106 77-110 (131)
69 PRK14231 camphor resistance pr 29.2 1E+02 0.0022 21.8 3.9 50 30-79 66-118 (129)
70 PRK15048 methyl-accepting chem 27.5 4E+02 0.0086 22.9 10.3 53 69-133 212-265 (553)
71 PRK14217 camphor resistance pr 27.2 1.4E+02 0.003 21.3 4.3 50 30-79 72-124 (134)
72 KOG3415|consensus 27.0 1.3E+02 0.0028 21.4 3.9 33 47-79 59-91 (129)
73 CHL00118 atpG ATP synthase CF0 26.9 1.4E+02 0.0031 21.4 4.4 38 57-94 27-65 (156)
74 COG0239 CrcB Integral membrane 26.8 2.1E+02 0.0046 20.2 5.1 56 15-76 62-120 (126)
75 PF04647 AgrB: Accessory gene 26.7 2.5E+02 0.0055 20.3 6.9 26 6-31 119-144 (185)
76 PRK10815 sensor protein PhoQ; 26.4 3.4E+02 0.0073 23.1 7.2 48 69-128 211-258 (485)
77 COG5098 Chromosome condensatio 24.8 95 0.0021 29.0 3.6 35 6-40 1015-1049(1128)
78 PLN03192 Voltage-dependent pot 24.1 3.3E+02 0.0071 25.0 7.1 45 57-101 279-323 (823)
79 COG1033 Predicted exporters of 23.9 3.9E+02 0.0084 24.7 7.4 69 12-81 183-252 (727)
80 PRK09966 putative inner membra 23.1 2.8E+02 0.0061 22.4 6.0 28 65-92 176-205 (407)
81 PRK09897 hypothetical protein; 23.0 1.7E+02 0.0037 25.7 4.8 54 73-127 323-384 (534)
82 PRK13454 F0F1 ATP synthase sub 22.4 2.6E+02 0.0056 20.7 5.2 30 62-91 41-71 (181)
83 PF10960 DUF2762: Protein of u 22.1 2E+02 0.0043 18.4 3.9 38 66-103 19-56 (71)
84 PRK01315 putative inner membra 22.0 4.6E+02 0.0099 21.7 8.1 74 25-100 3-83 (329)
85 PF07019 Rab5ip: Rab5-interact 21.7 2.3E+02 0.0049 18.0 4.4 19 59-77 33-51 (81)
86 PF09163 Form-deh_trans: Forma 21.3 1.9E+02 0.004 16.9 4.2 33 44-78 4-39 (44)
87 PRK05759 F0F1 ATP synthase sub 20.6 1.5E+02 0.0033 20.9 3.5 37 57-93 9-46 (156)
88 PRK14471 F0F1 ATP synthase sub 20.4 1.5E+02 0.0033 21.3 3.5 33 59-91 15-48 (164)
89 COG3769 Predicted hydrolase (H 20.3 89 0.0019 25.0 2.3 20 72-91 98-117 (274)
90 PF06295 DUF1043: Protein of u 20.2 3E+02 0.0065 19.3 4.9 16 117-132 54-69 (128)
91 PF14576 SEO_N: Sieve element 20.1 1.2E+02 0.0027 24.6 3.2 21 30-50 167-187 (286)
No 1
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=100.00 E-value=5.3e-47 Score=301.39 Aligned_cols=134 Identities=35% Similarity=0.589 Sum_probs=130.0
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhh
Q psy11402 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRM 80 (135)
Q Consensus 1 ~~~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l 80 (135)
+++.++++|||||||||||++||+.+++++.++++|++++++|+++||+.+|+.+++.+++|++++|++++++||||+++
T Consensus 118 l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l 197 (281)
T PF06472_consen 118 LNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRL 197 (281)
T ss_pred hhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 35668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402 81 TVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ 134 (135)
Q Consensus 81 ~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 134 (135)
++++|++|||||+.|+|+|+||||||||+||+.|+++++++|+++++||+++++
T Consensus 198 ~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 251 (281)
T PF06472_consen 198 NAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIR 251 (281)
T ss_pred HHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999764
No 2
>KOG0060|consensus
Probab=100.00 E-value=1e-39 Score=277.24 Aligned_cols=133 Identities=44% Similarity=0.738 Sum_probs=130.3
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhh
Q psy11402 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRM 80 (135)
Q Consensus 1 ~~~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l 80 (135)
++++|.+||||||||++|+++||..+++|+..+++|++|+++|+++||+.+||.+|+.+++|+++++++.+.+++|++++
T Consensus 174 is~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l 253 (659)
T KOG0060|consen 174 LSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKL 253 (659)
T ss_pred ecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402 81 TVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133 (135)
Q Consensus 81 ~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~ 133 (135)
+++||++||||||.|+|+|.|||+||||+|+..|+..++++|+.+++|.+.++
T Consensus 254 ~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~ 306 (659)
T KOG0060|consen 254 TVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELM 306 (659)
T ss_pred HHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998865
No 3
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=272.19 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=122.1
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccC----------chh----HHHHHHHHHHHHHHH
Q psy11402 6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGY----------QTP----TVMLGYLVVSGVILT 71 (135)
Q Consensus 6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~----------~~~----~~~~~y~~~~t~~~~ 71 (135)
+.+|||||||+||++.||+.+++|..+++++++++++|+.+||.++|. .+| +.+++|++++|++++
T Consensus 145 ~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~ 224 (604)
T COG4178 145 GLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTH 224 (604)
T ss_pred cCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999874 234 447889999999999
Q ss_pred HhccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402 72 HLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ 134 (135)
Q Consensus 72 ~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 134 (135)
++||||++||++++++||+||+.|+|+|+|||+||||+||+.||+.++++|..|++||++++.
T Consensus 225 ~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~ 287 (604)
T COG4178 225 LIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVR 287 (604)
T ss_pred HHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK12369 putative transporter; Reviewed
Probab=100.00 E-value=2.1e-35 Score=239.79 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=115.5
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc-----------hhHHHHHHHHHHHHHHHH
Q psy11402 4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----------TPTVMLGYLVVSGVILTH 72 (135)
Q Consensus 4 ~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~-----------~~~~~~~y~~~~t~~~~~ 72 (135)
.++.+|||||||+|||+.||+.+++|..+++++++++++|+.+||+.+|.. .++.+++|++++|+++++
T Consensus 109 ~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~ 188 (326)
T PRK12369 109 KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWF 188 (326)
T ss_pred CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999988642 235579999999999999
Q ss_pred hccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402 73 LRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ 134 (135)
Q Consensus 73 ~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 134 (135)
+|+||+++++++|++|||||+.|+|+|||+|+ | .|++.++++|.+|++||+++++
T Consensus 189 iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~ 243 (326)
T PRK12369 189 VGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFL 243 (326)
T ss_pred HcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 4 8999999999999999999764
No 5
>PRK11098 microcin B17 transporter; Reviewed
Probab=100.00 E-value=7.1e-34 Score=236.26 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=113.4
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc--------hh----HHHHHHHHHHHHHHHHh
Q psy11402 6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ--------TP----TVMLGYLVVSGVILTHL 73 (135)
Q Consensus 6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~--------~~----~~~~~y~~~~t~~~~~~ 73 (135)
+++|||||||+|||+.||+.+.+|..+++++++++++|+.+||+.+|.. +| +.+++|+++||++++++
T Consensus 185 r~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~v 264 (409)
T PRK11098 185 RHIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVV 264 (409)
T ss_pred CCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999988752 34 35889999999999999
Q ss_pred ccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402 74 RRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ 134 (135)
Q Consensus 74 g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 134 (135)
|+||+++++++|++|||||+.|+|+||||| +.|+++++++|++|++||+++++
T Consensus 265 G~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~ 317 (409)
T PRK11098 265 GIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYF 317 (409)
T ss_pred cccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 67999999999999999999874
No 6
>KOG0064|consensus
Probab=99.95 E-value=2.4e-27 Score=200.92 Aligned_cols=133 Identities=35% Similarity=0.508 Sum_probs=117.5
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcc---CchhHHHHHHHHHHHHHHHHhccch
Q psy11402 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLG---YQTPTVMLGYLVVSGVILTHLRRPA 77 (135)
Q Consensus 1 ~~~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G---~~~~~~~~~y~~~~t~~~~~~g~~l 77 (135)
++++|+.+.||||++||||..||++++.|++++.||++|++++++.|-...+ ..+.+.+.+-+.+++.+++.+.|||
T Consensus 209 Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~F 288 (728)
T KOG0064|consen 209 VSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKF 288 (728)
T ss_pred EecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCch
Confidence 4678999999999999999999999999999999999999999999977654 3333444444445667899999999
Q ss_pred hhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402 78 GRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133 (135)
Q Consensus 78 ~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~ 133 (135)
++|++++.+++|+||+.|+|+..|+||||||+|++.|.+.+++.|+.++.....+.
T Consensus 289 g~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~ 344 (728)
T KOG0064|consen 289 GKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIF 344 (728)
T ss_pred hhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765543
No 7
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.81 E-value=4.9e-19 Score=154.97 Aligned_cols=131 Identities=55% Similarity=0.926 Sum_probs=124.3
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhH
Q psy11402 3 NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTV 82 (135)
Q Consensus 3 ~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~ 82 (135)
+.|+..+|||||||+|++.+++...+++.++++++++++.++..||...+|..+..+++|+.+..++.++++||+.+++.
T Consensus 189 ~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~ 268 (659)
T TIGR00954 189 NLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTV 268 (659)
T ss_pred cCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHH
Confidence 45667899999999999999999999999999999999999999998889988888999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402 83 TEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133 (135)
Q Consensus 83 ~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~ 133 (135)
++++.||+||..|.+.++|+|+|++|+||+.|++++++.++++.++..+..
T Consensus 269 ~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 269 EEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887754
No 8
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=99.77 E-value=4.4e-18 Score=136.97 Aligned_cols=120 Identities=13% Similarity=0.180 Sum_probs=107.8
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc--h------h----HHHHHHHHHHHHHHHHh
Q psy11402 6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ--T------P----TVMLGYLVVSGVILTHL 73 (135)
Q Consensus 6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~--~------~----~~~~~y~~~~t~~~~~~ 73 (135)
..|+...|||+||+.+||+.+-+|...+++++++++.|..+||++++.. . | +.++++.++||+++..+
T Consensus 103 r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~v 182 (315)
T PF05992_consen 103 RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFV 182 (315)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999987642 1 1 44788999999999999
Q ss_pred ccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402 74 RRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133 (135)
Q Consensus 74 g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~ 133 (135)
|.+|.++.++.|+.||.||..|+.-.||.+ ..+...+.+.|.+|.+||+++.
T Consensus 183 GikLPgLe~~nQkvEAAyRKeLV~gED~~~--------ra~~~tl~eLF~~Vr~Ny~rly 234 (315)
T PF05992_consen 183 GIKLPGLEFNNQKVEAAYRKELVYGEDDAN--------RAQPPTLRELFSNVRRNYFRLY 234 (315)
T ss_pred hccCcchhhhhHHHHHHHHHHHHhcCcccc--------cCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888865 3567789999999999999975
No 9
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=99.63 E-value=1.1e-15 Score=122.87 Aligned_cols=120 Identities=12% Similarity=0.133 Sum_probs=108.5
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc--------h----hHHHHHHHHHHHHHHHH
Q psy11402 5 DNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ--------T----PTVMLGYLVVSGVILTH 72 (135)
Q Consensus 5 ~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~--------~----~~~~~~y~~~~t~~~~~ 72 (135)
...|+...|||+||..+|+..+-+|..+++++++|++.|..+||+.+... + .+.++++.+.||+++..
T Consensus 180 lrhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~ 259 (405)
T COG1133 180 LRHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAV 259 (405)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHh
Confidence 45688899999999999999999999999999999999999999875421 1 25578899999999999
Q ss_pred hccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 73 LRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 73 ~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
+|-+|.+|.++.|+.||.||..|+--.||+| .++...+.+.|+.|.+|+.|+
T Consensus 260 vGIKLPGLef~NQrvEAAyRKELVYgEDh~d--------rA~p~T~~ELf~nvr~NYfRL 311 (405)
T COG1133 260 VGIKLPGLEFRNQRVEAAYRKELVYGEDHAD--------RATPPTVRELFSNVRKNYFRL 311 (405)
T ss_pred hhccCCCcccccHHHHHHHHhhhhccCCchh--------hcCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987 578889999999999999885
No 10
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=98.33 E-value=2.6e-05 Score=58.13 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|+++|++...+........++.+++.++.....++.. +|.....+++...+...+..+++++..+...+.++..+++-
T Consensus 102 ~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (275)
T PF00664_consen 102 SRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFI-SWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELN 180 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhhhhccccc-ccccccccchhhhhhHhhhhhhccccccccccccccccccc
Confidence 58999999999888888888888887776665555433 55444555556666677778889999999999999999999
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
......-++.+.|-.|+.|+.|.++.++..++..+...+.
T Consensus 181 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (275)
T PF00664_consen 181 SFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKY 220 (275)
T ss_dssp HHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887776653
No 11
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.21 E-value=2.3e-05 Score=67.29 Aligned_cols=123 Identities=13% Similarity=0.134 Sum_probs=101.7
Q ss_pred CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhh
Q psy11402 9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLE 88 (135)
Q Consensus 9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~E 88 (135)
.+.-+|++.|++.+.+........++.+++.++.+...++...++ ..+.+++.+++..++..++++++.+...+.++.+
T Consensus 111 g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (571)
T TIGR02203 111 GTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ-LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSM 189 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345589999999999988888888888888888888877765433 2233444455556677788999999999999999
Q ss_pred hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 89 GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 89 adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
+++...+....++.+.|-.+++++.+.++.++.++...+...+.
T Consensus 190 ~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 190 GQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776654
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.16 E-value=3.4e-05 Score=68.51 Aligned_cols=123 Identities=7% Similarity=0.018 Sum_probs=98.7
Q ss_pred CCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHh
Q psy11402 8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKL 87 (135)
Q Consensus 8 idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~ 87 (135)
..+.-.|+++|++.+.+........++..++.++.+...++...+ .....+++...+..++..+++++..++..+.++.
T Consensus 257 ~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~-~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 335 (711)
T TIGR00958 257 TGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP-RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEA 335 (711)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567999999999888887778888888777776666665432 2223344445555667778999999999999999
Q ss_pred hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
++++........++.+.|-.+++|+.|.++..+..++..+...+
T Consensus 336 ~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 336 VAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred HHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776654
No 13
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.02 E-value=8.4e-05 Score=63.98 Aligned_cols=120 Identities=10% Similarity=0.009 Sum_probs=90.4
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402 12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf 91 (135)
-.|+++|++...+.....+..++..++.++.+...++....+ ..+.+++...+..++..+.+++..+...+.++.++++
T Consensus 118 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (576)
T TIGR02204 118 VSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK-LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADA 196 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999987766666666666666666555554433322 2222333444445566678899999999999999999
Q ss_pred HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
...+....++.+.|..++.++.+.+..++..++..+.+.+.
T Consensus 197 ~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (576)
T TIGR02204 197 GSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR 237 (576)
T ss_pred HHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877776553
No 14
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.86 E-value=0.00031 Score=60.64 Aligned_cols=121 Identities=8% Similarity=0.071 Sum_probs=97.2
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhh
Q psy11402 11 PDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGE 90 (135)
Q Consensus 11 PDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ead 90 (135)
--+|++.|++...+........++..++.++.+...++...++ ..+.+++.+.+..++..+.++++.+...+.++..++
T Consensus 124 ~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (582)
T PRK11176 124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ-LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQ 202 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999998888888888888888888887777655433 223333344455556667899999999999999999
Q ss_pred HHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 91 FRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 91 fR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
+...+....++.+.|-.++.++.+.++.++..+...+...+.
T Consensus 203 ~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T PRK11176 203 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKM 244 (582)
T ss_pred HHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887776553
No 15
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.65 E-value=0.00083 Score=58.24 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=88.1
Q ss_pred CCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHh
Q psy11402 8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKL 87 (135)
Q Consensus 8 idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~ 87 (135)
..+.-+|+++|++.+.......+..++..++..+.....++....+ ..+.+++..++..++..++.++..+...+.++.
T Consensus 112 ~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~ 190 (588)
T PRK13657 112 SGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR-LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEH 190 (588)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445679999999887666666666666655554444444332221 222233333444456667788888888888889
Q ss_pred hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
.+++...+....++.+.|..|+.++.+.++..+.++++.+...+
T Consensus 191 ~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
T PRK13657 191 YHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP 234 (588)
T ss_pred HHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776544
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.64 E-value=0.0011 Score=57.64 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH-HHHHhccchhhhhHHHHHhhhhH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGV-ILTHLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~-~~~~~g~~l~~l~~~~q~~Eadf 91 (135)
.|+++|++...+........++.++++++.....++....+.+ +.+++...+..+ +..+.++...+...+.++..+++
T Consensus 121 srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (574)
T PRK11160 121 NRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA-LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQY 199 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6899999999888877777777777776655555543321111 111111111122 22334555566777888999999
Q ss_pred HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
...+.....+.+.|-.|+.|+.+.+++++..++..+...+.
T Consensus 200 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 200 RVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887766553
No 17
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.60 E-value=0.0013 Score=56.97 Aligned_cols=124 Identities=8% Similarity=0.018 Sum_probs=86.3
Q ss_pred CCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHh
Q psy11402 8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKL 87 (135)
Q Consensus 8 idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~ 87 (135)
..+.-.|++.|++............++..++..+.+...++...+|...+.+++...+..++..++++++.+...+.++.
T Consensus 92 ~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
T PRK10789 92 TGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAA 171 (569)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799999999876655556666666555544444443233443333333444444455666788888888888888
Q ss_pred hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
.+++-......-.+.+.|-.++.++.+.++.++...+..+...+
T Consensus 172 ~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 215 (569)
T PRK10789 172 FSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMR 215 (569)
T ss_pred HHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999998888776655544
No 18
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.52 E-value=0.0018 Score=56.37 Aligned_cols=120 Identities=10% Similarity=0.064 Sum_probs=85.7
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhh
Q psy11402 11 PDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGE 90 (135)
Q Consensus 11 PDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ead 90 (135)
.=.|+++|++...+.....+..++..++.++.+...++... |...+.+++.+.+..++..++++++.+...+.++..++
T Consensus 115 ~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (585)
T TIGR01192 115 ALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMD-WRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHN 193 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999998887777777776766666665555554332 21222223333344445566788888888888888888
Q ss_pred HHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 91 FRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 91 fR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
+-......-++.+.|-.++.++.|.+++++..++..+...+
T Consensus 194 ~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 194 VFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999998887665444
No 19
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.51 E-value=0.0021 Score=54.98 Aligned_cols=121 Identities=4% Similarity=0.028 Sum_probs=84.2
Q ss_pred CccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402 10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEG 89 (135)
Q Consensus 10 NPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ea 89 (135)
+.-.|+++|++...+........++..++..+.+...++.. .|.....+++.+.+..++..+.++++.+...+.++.++
T Consensus 102 ~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 180 (529)
T TIGR02857 102 ELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPA-DWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALS 180 (529)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999887777666666666665555554444332 22222222222223334455678888888888899999
Q ss_pred hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
++-..+...-++.+.|-.|+.|+.+.++.++..++..+...+
T Consensus 181 ~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 222 (529)
T TIGR02857 181 RLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMR 222 (529)
T ss_pred HHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777665443
No 20
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.50 E-value=0.002 Score=55.02 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=83.4
Q ss_pred CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccch-hhhhHHHHHh
Q psy11402 9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPA-GRMTVTEQKL 87 (135)
Q Consensus 9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l-~~l~~~~q~~ 87 (135)
.+--.|+++|++...+........++.+++.++.+...++...+..+ ..+++.+.+..++..+++.+. .+...+.++.
T Consensus 110 g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (529)
T TIGR02868 110 GDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA-LVLAAGLLLAGFVAPLVSLRAARAAEVALARL 188 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34456999999999888887777777777777766666654432222 112222222223333444443 3455666778
Q ss_pred hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
++++-.......++.+.|-.++.|+.+.++.++..++..+...+
T Consensus 189 ~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02868 189 RSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERR 232 (529)
T ss_pred HHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988888777665444
No 21
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.48 E-value=0.0017 Score=57.47 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=88.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|+ .|++...+........++..++.++.+...++...++ ..+.+++.+.+..++..++++++.+...+..+.++++.
T Consensus 247 ~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (694)
T TIGR03375 247 NQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP-LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRN 324 (694)
T ss_pred HHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 6777777666655555555555566666566554433 22334444455556667789999999999999999999
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
..+....++.+.|-.++.|+.+.++.++.+.+..+...+.
T Consensus 325 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR03375 325 AVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKS 364 (694)
T ss_pred HHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887666553
No 22
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.46 E-value=0.0019 Score=57.24 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHH
Q psy11402 14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRY 93 (135)
Q Consensus 14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~ 93 (135)
|++ |++...+........++..++.++.+...++...++ ..+.+++.+.+..++..++++++.++..+.++..+++..
T Consensus 258 r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (708)
T TIGR01193 258 RFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML-LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNS 335 (708)
T ss_pred Hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676 666666655555555555555555555555443322 223333444445556677889999999999999999999
Q ss_pred HHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 94 INSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 94 ~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
.+....++.|.|-.+++|+.+.++.++.+.+..+...+
T Consensus 336 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 336 SIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred HHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766554
No 23
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.44 E-value=0.0023 Score=56.66 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|+++| +...+...+....++..++.++.+...++...++. .+.+++...+..++..+++++..+...+.++.++++.
T Consensus 255 ~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (710)
T TIGR03796 255 SRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL-TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLT 332 (710)
T ss_pred HHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467766 45555555555666666666666666666554332 2334444455556677789999999999999999999
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
..+....++.+.|-.++.|+.+.++..+.+.+..+...+
T Consensus 333 ~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 371 (710)
T TIGR03796 333 GVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371 (710)
T ss_pred HHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888887766544
No 24
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.36 E-value=0.0035 Score=54.29 Aligned_cols=119 Identities=8% Similarity=0.120 Sum_probs=83.8
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402 12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf 91 (135)
-+|++.|++...+........++..++..+.....++... |.....+++.+.+..++..+++++..+...+.++..+++
T Consensus 123 ~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (588)
T PRK11174 123 ATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN-WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARL 201 (588)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999887777666666666665555544443322 211122222233334455567888888888888888999
Q ss_pred HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
-.......++.+.|-.++.|+.+.++.++..++..+...+
T Consensus 202 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK11174 202 SGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME 241 (588)
T ss_pred HHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998888887766544
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.24 E-value=0.0058 Score=54.14 Aligned_cols=117 Identities=10% Similarity=0.073 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
+|+ .|++...+........++..++..+.+...++...++ ..+.+++.+++..++..++++++.+...+..+..+++.
T Consensus 240 ~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (694)
T TIGR01846 240 ARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT-LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAAT 317 (694)
T ss_pred HHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467 5777776665555555454444444455455444322 22333333444455666788888888889999999999
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
..+....++.|.|-.++.|+.+.++.++.+.+..+...+
T Consensus 318 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 356 (694)
T TIGR01846 318 SFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR 356 (694)
T ss_pred HHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887766554
No 26
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.08 E-value=0.0097 Score=52.64 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++ |++...+...+....++..++..+.+...++...++.+ +.+++...+..++..++++++.+...+.++.++++.
T Consensus 237 ~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (686)
T TIGR03797 237 SRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLA-LVAVALALVAIAVTLVLGLLQVRKERRLLELSGKIS 314 (686)
T ss_pred HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4665 55555544444333333333334444455554433222 222233333444666788889999999999999999
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
.......++.|.|-.++.|+.+.++.++.+.+..+...+.
T Consensus 315 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 354 (686)
T TIGR03797 315 GLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSA 354 (686)
T ss_pred HHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887766653
No 27
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.99 E-value=0.014 Score=50.68 Aligned_cols=120 Identities=10% Similarity=0.004 Sum_probs=81.9
Q ss_pred CccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402 10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEG 89 (135)
Q Consensus 10 NPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ea 89 (135)
+--+|+++|++...+........++.+++.++.+...++....+.+ +.+++...+..++..+.++...+...+.++..+
T Consensus 123 ~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (592)
T PRK10790 123 QLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA-LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLA 201 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899999999888888777777777777666655554322222 222222222223334455555666666677788
Q ss_pred hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402 90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW 130 (135)
Q Consensus 90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~ 130 (135)
++........++.+.|--+++++...++..+...+..+...
T Consensus 202 ~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 242 (592)
T PRK10790 202 DINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARM 242 (592)
T ss_pred HHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999888888887776665543
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.37 E-value=0.08 Score=45.61 Aligned_cols=118 Identities=11% Similarity=-0.066 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhh
Q psy11402 12 DQLLTADLDKFCDMFTD-LYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGE 90 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~-l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ead 90 (135)
.-+++.|++...+.... ....++..++.++. ...++...++.+...+.+ +.+..++..+.++...+...+.++..++
T Consensus 101 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~-~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (544)
T TIGR01842 101 GLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGG-AVVLVGLALLNNRATKKPLKEATEASIR 178 (544)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45788999988776655 34445555554433 334443332222111111 1222233344566666677777888888
Q ss_pred HHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 91 FRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 91 fR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
+...+...-++.+.|-.++.|+.+.++.++.+++..+...+
T Consensus 179 ~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 219 (544)
T TIGR01842 179 ANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSA 219 (544)
T ss_pred HhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999998887776654
No 29
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.34 E-value=0.079 Score=45.73 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=63.1
Q ss_pred CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhh
Q psy11402 9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLE 88 (135)
Q Consensus 9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~E 88 (135)
.+-=.|++.|++........ ...++..++.++.+...++... |...+.+++.+.+..++..++++++.+...+.++..
T Consensus 105 g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~-~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 182 (547)
T PRK10522 105 ASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLS-PKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETE 182 (547)
T ss_pred cchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445899999988765443 3455666666666655554432 222233333333444456677888888888888888
Q ss_pred hhHHHHHHhhhhhcchhhc
Q psy11402 89 GEFRYINSRLISNSEEIAF 107 (135)
Q Consensus 89 adfR~~l~rlr~naE~IAf 107 (135)
+++-......-++.+.+++
T Consensus 183 ~~~~~~~~e~l~g~~~i~~ 201 (547)
T PRK10522 183 DKLYNDYQTVLEGRKELTL 201 (547)
T ss_pred HHHHHHHHHHHhhhHhhhc
Confidence 8888888888888888864
No 30
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.31 E-value=0.074 Score=46.07 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=66.1
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402 12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf 91 (135)
=.|+++|++...+.... ...++..++.++.....++.. .|...+.+++...+..++..+..++..+...+.++.++++
T Consensus 113 ~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (555)
T TIGR01194 113 IPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL-SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAF 190 (555)
T ss_pred hHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35899999988776554 444555555444333333322 2222233333333444444555666666777777788888
Q ss_pred HHHHHhhhhhcchhhcccCcH--HHHHHHHHHHHHHHH
Q psy11402 92 RYINSRLISNSEEIAFYQGNQ--REKLTVLAAFNKLVS 127 (135)
Q Consensus 92 R~~l~rlr~naE~IAf~~Ge~--~E~~~l~~~f~~l~~ 127 (135)
.......-++.+.|-.++.++ .+.++.++...+..+
T Consensus 191 ~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 228 (555)
T TIGR01194 191 NEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIAD 228 (555)
T ss_pred HHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777888887777733 344555555444443
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=96.15 E-value=0.095 Score=50.68 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++.+.+.. .....+...++.++...+.||...|+.....+.+ +++...+..++++.+.+...+.++..++.=
T Consensus 402 n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v-~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~ 479 (1495)
T PLN03232 402 NMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLI-LFLLIPLQTLIVRKMRKLTKEGLQWTDKRV 479 (1495)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999998775 4556666777777777777887666532211111 112222344566667777766666666644
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW 130 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~ 130 (135)
......-++.+.|-+|+.|+...+++++..++-.+..+
T Consensus 480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~ 517 (1495)
T PLN03232 480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFR 517 (1495)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55558889999999999999998888776665554433
No 32
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=95.66 E-value=0.18 Score=48.93 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402 12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf 91 (135)
=.+++.|++++.+.. .....+...++.++...+.||...|+... ..++.+++...+..++++.+.++..+..+.....
T Consensus 418 ~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r 495 (1522)
T TIGR00957 418 VNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVL-AGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNR 495 (1522)
T ss_pred HHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999988744 56777778888888888889988776421 1122222333344456666666666666655555
Q ss_pred HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHH
Q psy11402 92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVS 127 (135)
Q Consensus 92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~ 127 (135)
=.......++.+.|=+|+.|+.-.+++.+..+.-.+
T Consensus 496 ~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~ 531 (1522)
T TIGR00957 496 IKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELK 531 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 566678889999999999988877777665555433
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=95.17 E-value=0.45 Score=46.15 Aligned_cols=114 Identities=6% Similarity=-0.115 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHH
Q psy11402 14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRY 93 (135)
Q Consensus 14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~ 93 (135)
|++.|+....+....-+..++..++.++.....++. ..|...+.+++.+.+..++..++++.+.+...+.++..+++=.
T Consensus 159 ~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1466)
T PTZ00265 159 DLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMS 237 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555565555554455555555444333322221 2232223333333333444555677776677777777788888
Q ss_pred HHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402 94 INSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM 128 (135)
Q Consensus 94 ~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~ 128 (135)
.......+.+.|.-|++|+.+.++.++......+.
T Consensus 238 ~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~ 272 (1466)
T PTZ00265 238 IIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKY 272 (1466)
T ss_pred HHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999888766655443
No 34
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=95.09 E-value=0.37 Score=46.71 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
-+++.|++++.+....+ ..+...++.++.+.+.||...|+.... .++.+++...+..++++.+.++..+..+....-=
T Consensus 183 nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~ 260 (1490)
T TIGR01271 183 SLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFC-GLGFLILLALFQACLGQKMMPYRDKRAGKISERL 260 (1490)
T ss_pred HHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999876644 556677888888999999998875422 2222333344555666666666655555544444
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNK 124 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~ 124 (135)
.....+..+.+.|=+|+-|+...+++.+.-+.
T Consensus 261 ~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~ 292 (1490)
T TIGR01271 261 AITSEIIENIQSVKAYCWEEAMEKIIKNIRQD 292 (1490)
T ss_pred HHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 55677888888899998888877666654443
No 35
>PLN03130 ABC transporter C family member; Provisional
Probab=95.04 E-value=0.42 Score=46.77 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.+++.|++++.+... ....+...++.++...+.||...|+.....+ +.+++...+..++++.+.++..+..+..++.=
T Consensus 402 nl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~-~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~ 479 (1622)
T PLN03130 402 NLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGS-LMLVLMFPIQTFIISKMQKLTKEGLQRTDKRI 479 (1622)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999988764 4566667777777777777776665321111 11222223334456666666666666655555
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNK 124 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~ 124 (135)
.......++.+.|=+|+.|+...+++.+.-++
T Consensus 480 ~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~ 511 (1622)
T PLN03130 480 GLMNEVLAAMDTVKCYAWENSFQSKVQTVRDD 511 (1622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 56668889999999999998887777665444
No 36
>KOG0058|consensus
Probab=94.73 E-value=0.56 Score=42.34 Aligned_cols=119 Identities=10% Similarity=0.069 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402 12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf 91 (135)
=-|+|.|+..+++++.......+.+.+.++--...+... .|......++-+-+..++.+..|+-+.++..+.|..=|+-
T Consensus 248 ~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~-S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a 326 (716)
T KOG0058|consen 248 ISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL-SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARA 326 (716)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999888888888776444333222 1222233333344445567778888888888887765543
Q ss_pred HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
=-.-.-.-.+---|--+.+|+.|.++-.+..+++.+-..+
T Consensus 327 ~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k 366 (716)
T KOG0058|consen 327 NQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK 366 (716)
T ss_pred HHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222233667788899988888777776655433
No 37
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.77 E-value=1.7 Score=37.65 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=76.1
Q ss_pred CccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402 10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEG 89 (135)
Q Consensus 10 NPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ea 89 (135)
+.=.|++.|++............+..+++.++.....++.. +|.....+++-..+..++..+++++..+.....++..+
T Consensus 110 ~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (567)
T COG1132 110 DLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSL-SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALG 188 (567)
T ss_pred hHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44468999999888777766444444555555444444332 22222222222333444555566566677777777778
Q ss_pred hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHH
Q psy11402 90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMS 129 (135)
Q Consensus 90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~ 129 (135)
++-......-.+-+.|-.++.++.|.+..++..+...+..
T Consensus 189 ~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~ 228 (567)
T COG1132 189 ELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228 (567)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888889999988777777766655553
No 38
>PTZ00243 ABC transporter; Provisional
Probab=92.15 E-value=2.3 Score=41.66 Aligned_cols=107 Identities=7% Similarity=0.072 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
-.++.|++++.+.... ...+...++.++...+.||...||.....+ +-+++...+..++++...+...+..+....--
T Consensus 348 nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv-~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri 425 (1560)
T PTZ00243 348 NMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAV-AVLLVTLPLNGAIMKHQMAARRKIAKAADARV 425 (1560)
T ss_pred HHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999888754 456778888888889999999888542221 11222333445556655555544444433333
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAA 121 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~ 121 (135)
.....+..+.+.|=+++.|+.-.+++.+.
T Consensus 426 ~~~~E~l~gIr~IK~~~wE~~f~~ri~~~ 454 (1560)
T PTZ00243 426 KATNEFFSGIRIAKFMAWEPCFVANIEDK 454 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777888888877766666553
No 39
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=92.10 E-value=3 Score=40.69 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|+++|++..-+.+......++..++.++.+...++...++.... ++...++...+..+..+...++........+..-
T Consensus 986 nRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~-~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~ 1064 (1490)
T TIGR01271 986 NRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA-AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIF 1064 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 488999999888777777777777777766665554433221111 1111111111112222222222222222233344
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM 128 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~ 128 (135)
.......++.+.|--|+.++...++..+..+...+.
T Consensus 1065 ~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~ 1100 (1490)
T TIGR01271 1065 SHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100 (1490)
T ss_pred HHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 555566778888989999988888888877754433
No 40
>PTZ00243 ABC transporter; Provisional
Probab=91.53 E-value=3.6 Score=40.34 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHH----hh
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQK----LE 88 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~----~E 88 (135)
.|++.|++..-+.+..-+..++..++.++.....++.. .|+.+++.. ...++...+...+.+...+.++ ..
T Consensus 1059 nR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~----~p~~~~~~i-~~~~~~~~i~~~~~~~~r~~~r~~~~~~ 1133 (1560)
T PTZ00243 1059 NRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS----QPFVLVALV-PCGYLYYRLMQFYNSANREIRRIKSVAK 1133 (1560)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37789999888777766666666666665554443322 122211111 1111222233333333333333 33
Q ss_pred hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402 89 GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW 130 (135)
Q Consensus 89 adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~ 130 (135)
+..=.......++.+.|--|+.++.+.+...+.++...+.+.
T Consensus 1134 s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1134 SPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred cHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 444455566677888899999999888888777776665443
No 41
>KOG0055|consensus
Probab=90.57 E-value=3.7 Score=39.37 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhh
Q psy11402 9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLE 88 (135)
Q Consensus 9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~E 88 (135)
-+--.|+++|+++.-+.+.+=...+++-+.+.+.=. ++.-..+|....+++.+..+-++.....++-+.+++.+++..=
T Consensus 128 g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~-ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~y 206 (1228)
T KOG0055|consen 128 GELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGF-VIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAY 206 (1228)
T ss_pred cceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788887777666665444444444433211 1111123433344444444444444445555566676666655
Q ss_pred hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402 89 GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM 128 (135)
Q Consensus 89 adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~ 128 (135)
++==...-....+.--+..++||+.|.++-.+.+..-.+.
T Consensus 207 a~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~ 246 (1228)
T KOG0055|consen 207 AKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF 246 (1228)
T ss_pred HHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 4433444555666667889999999999888887765544
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=87.18 E-value=11 Score=37.01 Aligned_cols=112 Identities=7% Similarity=0.014 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHH---HHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGY---LVVSGVILTHLRRPAGRMTVTEQKLEG 89 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y---~~~~t~~~~~~g~~l~~l~~~~q~~Ea 89 (135)
.|++.|++..-+.+......++..++.++.....++.. .|+.++.. .++..++.++..+...++....+...+
T Consensus 1066 nR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s 1141 (1522)
T TIGR00957 1066 NRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLA----TPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRS 1141 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48899998887777666666666666665444433222 12211111 111112222222322222222222223
Q ss_pred hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402 90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM 128 (135)
Q Consensus 90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~ 128 (135)
.+=.......++.+.|--|+.++...+...+..+...+.
T Consensus 1142 ~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1180 (1522)
T TIGR00957 1142 PVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKA 1180 (1522)
T ss_pred HHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333334445566666666776666555555555444433
No 43
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=16 Score=32.35 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHH---HHHHHHHHHHHHHH----hccchhhhhHHHHH
Q psy11402 14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTV---MLGYLVVSGVILTH----LRRPAGRMTVTEQK 86 (135)
Q Consensus 14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~---~~~y~~~~t~~~~~----~g~~l~~l~~~~q~ 86 (135)
|+.+||+.+ -+++..++.|++..+.-.....--.|+..+.. +.++..+..+++-+ .|+| .+....+
T Consensus 120 RLvaDVd~L----d~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~---~~~~l~~ 192 (573)
T COG4987 120 RLVADVDAL----DNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRK---FGAHLAQ 192 (573)
T ss_pred HHHhhHHHH----hhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHH
Confidence 899998765 66777777777665433222211122222211 22233333333323 3444 4455677
Q ss_pred hhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 87 LEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 87 ~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
..+.||.-......---+--+++.++.-+..+.+.=....+..++
T Consensus 193 ~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k 237 (573)
T COG4987 193 GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRK 237 (573)
T ss_pred HHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 778888777766666666666777677666666655554444433
No 44
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=85.78 E-value=18 Score=35.56 Aligned_cols=115 Identities=6% Similarity=-0.085 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhH-HHHHh----
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTV-TEQKL---- 87 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~-~~q~~---- 87 (135)
.|++.|++...+........++..++.++.....++.. +|...+.+ ..+..+++..+++....... +.++.
T Consensus 929 srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~-~~~l~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1466)
T PTZ00265 929 AHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF-CPIVAAVL---TGTYFIFMRVFAIRARLTANKDVEKKEINQ 1004 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 58899999888777766666666666655544333221 12111111 11112222333332221111 11111
Q ss_pred -------------hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 88 -------------EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 88 -------------EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
.++.=........+-+.|.-|+.|+.+.++..+..+...+...+
T Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~ 1061 (1466)
T PTZ00265 1005 PGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKR 1061 (1466)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 22333344555678888899999999998888887766554443
No 45
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=85.06 E-value=20 Score=32.57 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=65.4
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHH
Q psy11402 42 IYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAA 121 (135)
Q Consensus 42 ~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~ 121 (135)
.|..++|-.+++ ..+.+++-+.+-.++..++.|++.+.+.++-...|+==..++....+.|.|=-.+.|+.=+...+++
T Consensus 283 i~l~vm~~ys~~-L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~ 361 (709)
T COG2274 283 IFLAVMFLYSWK-LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNR 361 (709)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHH
Confidence 344455544332 2344555555556677778999999999999999988888999999999998888888888888888
Q ss_pred HHHHHHHHH
Q psy11402 122 FNKLVSMSW 130 (135)
Q Consensus 122 f~~l~~~~~ 130 (135)
|.+.++-..
T Consensus 362 ~~~~~~~~~ 370 (709)
T COG2274 362 LAKQVNIGF 370 (709)
T ss_pred HHHHHHHhh
Confidence 887665443
No 46
>KOG0054|consensus
Probab=79.21 E-value=43 Score=32.94 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHH
Q psy11402 14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRY 93 (135)
Q Consensus 14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~ 93 (135)
=++-|++++.+.+. ....+...++-++...+.||...|+.....+. .+++..-+..++++...+...++.+...+==.
T Consensus 304 lms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~-~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik 381 (1381)
T KOG0054|consen 304 LMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVA-VMVLLIPLNSFLAKKIAKFQKRLMKRKDERIK 381 (1381)
T ss_pred hhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 58899999988777 66777788888999999999999985321111 22222223344444444444443333222123
Q ss_pred HHHhhhhhcchhhcccCcHH
Q psy11402 94 INSRLISNSEEIAFYQGNQR 113 (135)
Q Consensus 94 ~l~rlr~naE~IAf~~Ge~~ 113 (135)
...-+.++-..|=+|.=|+.
T Consensus 382 ~~nEiL~~IkviK~yaWE~~ 401 (1381)
T KOG0054|consen 382 LMNEILNGIKVIKLYAWEKP 401 (1381)
T ss_pred HHHHHHhhhHhhhhHhhHHH
Confidence 33445666666666655443
No 47
>PLN03232 ABC transporter C family member; Provisional
Probab=76.76 E-value=50 Score=32.51 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYV 44 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~ 44 (135)
.|++.|++..-+.+......++..++.++...
T Consensus 1011 nr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~ 1042 (1495)
T PLN03232 1011 NRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042 (1495)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899998887776666666666655554433
No 48
>PLN03130 ABC transporter C family member; Provisional
Probab=73.18 E-value=66 Score=32.06 Aligned_cols=33 Identities=6% Similarity=0.071 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVY 45 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~ 45 (135)
.|++.|++..-+........++..+++++....
T Consensus 1014 nR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 1014 NRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999988877666666666666665554433
No 49
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=70.66 E-value=29 Score=25.64 Aligned_cols=68 Identities=6% Similarity=0.037 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhccchhhhhHHH------------------HHhhhhHHHHHHhhhhhcchhhcc------cCcHHH
Q psy11402 59 MLGYLVVSGVILTHLRRPAGRMTVTE------------------QKLEGEFRYINSRLISNSEEIAFY------QGNQRE 114 (135)
Q Consensus 59 ~~~y~~~~t~~~~~~g~~l~~l~~~~------------------q~~EadfR~~l~rlr~naE~IAf~------~Ge~~E 114 (135)
++.+.++-.++-+++-||+.+.-.++ ++++++|.-.+..-|.-+.+|+-- ..-..|
T Consensus 17 iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~ 96 (155)
T PRK06569 17 IVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIK 96 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555666666554333 233445666666666666666543 222344
Q ss_pred HHHHHHHHHHHH
Q psy11402 115 KLTVLAAFNKLV 126 (135)
Q Consensus 115 ~~~l~~~f~~l~ 126 (135)
++.++..+..++
T Consensus 97 ~~~~ea~L~~~~ 108 (155)
T PRK06569 97 KKNLEQDLKNSI 108 (155)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 50
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.71 E-value=73 Score=23.07 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHH-HHHHHHHHHHHHHHHHh
Q psy11402 64 VVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE-KLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 64 ~~~t~~~~~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E-~~~l~~~f~~l~~~~~~ 131 (135)
++|.+++++.-+. .-+|++.|.++-..-.++-++-+++.=.=.+.+| -+.+.+.|.+|.+|...
T Consensus 20 ~IG~li~Rlt~~~----~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~ 84 (138)
T COG3105 20 IIGALIARLTNRK----LKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAK 84 (138)
T ss_pred HHHHHHHHHcchh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555544333 3344555555555555555555444433333444 35666677777666543
No 51
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=56.18 E-value=64 Score=24.67 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchh
Q psy11402 21 KFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAG 78 (135)
Q Consensus 21 ~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~ 78 (135)
-|--.+-++..+..-+.+.+..|+..+. .|..+++|.++.+++..++.-.+.
T Consensus 129 Pl~~~~Es~~~~~~As~v~a~~fs~~~~------t~igi~g~ail~a~v~s~Idd~~~ 180 (187)
T PF01024_consen 129 PLFLELESLAAGGAASAVAAFAFSFILG------TPIGILGIAILMAVVGSLIDDKFV 180 (187)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3444455667777777888888887775 566677887777777777766554
No 52
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=52.83 E-value=60 Score=20.91 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=12.5
Q ss_pred CCCccchHHHHHHHHH
Q psy11402 8 IANPDQLLTADLDKFC 23 (135)
Q Consensus 8 idNPDQRIteDi~~f~ 23 (135)
+|=+.||.+|++...+
T Consensus 1 iDf~gQ~~ae~l~~~i 16 (76)
T PF06645_consen 1 IDFKGQRLAEKLMQYI 16 (76)
T ss_pred CCchHHHHHHHHHHHH
Confidence 5778899999977653
No 53
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=52.45 E-value=72 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q psy11402 15 LTADLDKFCDMFTDLYSNICKPVLDIVIYV 44 (135)
Q Consensus 15 IteDi~~f~~~~~~l~~~~~~~~~~li~f~ 44 (135)
+.+...++......+....+-.++.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~a~vl~~~~l~~l~ 56 (121)
T PF07332_consen 27 LREKARRLGRGLALLVLAAVLALLALLFLL 56 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444444444444433
No 54
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.75 E-value=70 Score=22.55 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy11402 116 LTVLAAFNKLVSMSW 130 (135)
Q Consensus 116 ~~l~~~f~~l~~~~~ 130 (135)
+.|.+.+.+|.+|+-
T Consensus 60 ~~l~~~Y~~l~~Hla 74 (128)
T PF06295_consen 60 DNLTQDYQKLYQHLA 74 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 55
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=50.68 E-value=98 Score=27.04 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHH----HHHHHhccchhhhhHHHHHhhhh
Q psy11402 15 LTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSG----VILTHLRRPAGRMTVTEQKLEGE 90 (135)
Q Consensus 15 IteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t----~~~~~~g~~l~~l~~~~q~~Ead 90 (135)
.+.|++.-+-.++.++ .+.++.+-.+..+..||-.++. ..+.+.++++++. +.+..+=+.+......+.++.++
T Consensus 111 L~~Dvr~ISf~~s~lp-~~~qa~il~l~s~aYLayLSp~-mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~ 188 (546)
T COG4615 111 LTSDVRNISFAFSRLP-ELVQAIILTLGSAAYLAYLSPK-MFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQND 188 (546)
T ss_pred hcccccceeehHhhhH-HHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3567777664444333 3444443333333445444332 2233334443333 34444556666666667777777
Q ss_pred HHHHH---Hhhhh--------hcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402 91 FRYIN---SRLIS--------NSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133 (135)
Q Consensus 91 fR~~l---~rlr~--------naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~ 133 (135)
|-..+ -.++- |.+.++--.-+.+.+......|..+-.||-+.+
T Consensus 189 y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~ 242 (546)
T COG4615 189 YQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIM 242 (546)
T ss_pred HHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 74332 12222 222222222222223344455655667776654
No 56
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=50.32 E-value=90 Score=22.20 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q psy11402 9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTST 50 (135)
Q Consensus 9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~ 50 (135)
|+|++=+.++......++. +..+++-+++..+++.|.....
T Consensus 62 ~~~~~t~~~~~k~~~~qls-~v~Nilvsv~~~~~~~~~~~~~ 102 (142)
T PF11712_consen 62 DEPEDTPAQELKSVKRQLS-TVFNILVSVFAVFFAGWYWAGY 102 (142)
T ss_pred cCCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 6778888888888887755443
No 57
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=47.53 E-value=34 Score=26.19 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHH-HHhhhhH
Q psy11402 35 KPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTE-QKLEGEF 91 (135)
Q Consensus 35 ~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~-q~~Eadf 91 (135)
-|.++..+|.+.+. |.++.+.++..++.+++-||+.+.-.++ ++.++++
T Consensus 44 ~p~~~~~~~~~~l~--------w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L 93 (204)
T PRK09174 44 FPPFDSTHYASQLL--------WLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDL 93 (204)
T ss_pred CCCCcchhccHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666554432 3334444444455555666666554443 3344443
No 58
>PRK11677 hypothetical protein; Provisional
Probab=46.63 E-value=1.1e+02 Score=22.07 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHhhhhHHHHHHhhhhhcchhhcccCcHHH-HHHHHHHHHHHHHHH
Q psy11402 82 VTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE-KLTVLAAFNKLVSMS 129 (135)
Q Consensus 82 ~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E-~~~l~~~f~~l~~~~ 129 (135)
.++.++|.+.--.-..+-++-.+++=.=.+.+| -+.|.+.|.+|.+|.
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~Hl 77 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHM 77 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555555554444432222232 244555555555554
No 59
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=45.30 E-value=78 Score=20.00 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q psy11402 21 KFCDMFTDLYSNICKPVLDIVIYVYRLTST 50 (135)
Q Consensus 21 ~f~~~~~~l~~~~~~~~~~li~f~~~L~~~ 50 (135)
+.....++-++.++-+++|++.|..+|++.
T Consensus 10 kigqlfvdafteflvsivdiiiflailfgf 39 (73)
T PF07069_consen 10 KIGQLFVDAFTEFLVSIVDIIIFLAILFGF 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666778888999999999998643
No 60
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=44.94 E-value=1.3e+02 Score=22.80 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=39.5
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhccC---chhHHHHHHHHHHHHHHHH-hccchhhhhH---------HHHHhhhh
Q psy11402 24 DMFTDLYSNICKPVLDIVIYVYRLTSTLGY---QTPTVMLGYLVVSGVILTH-LRRPAGRMTV---------TEQKLEGE 90 (135)
Q Consensus 24 ~~~~~l~~~~~~~~~~li~f~~~L~~~~G~---~~~~~~~~y~~~~t~~~~~-~g~~l~~l~~---------~~q~~Ead 90 (135)
+...+.+++++...+...+|+..-...... .=|.++++-..+++..+-| +||-++...+ +.+.+|.+
T Consensus 41 ~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~e 120 (173)
T PF08566_consen 41 NLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKE 120 (173)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555555544332211111 1366677766666665555 7777765443 34566777
Q ss_pred HHHHHHhhh
Q psy11402 91 FRYINSRLI 99 (135)
Q Consensus 91 fR~~l~rlr 99 (135)
|=.-..+-|
T Consensus 121 F~~rIkknR 129 (173)
T PF08566_consen 121 FLARIKKNR 129 (173)
T ss_pred HHHHHHHcC
Confidence 744444444
No 61
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=42.63 E-value=2e+02 Score=25.73 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc-------hhHHHHHHHHHHHHHHHH-hccchhhhhHHHHHhhhhH
Q psy11402 20 DKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-------TPTVMLGYLVVSGVILTH-LRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 20 ~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~-------~~~~~~~y~~~~t~~~~~-~g~~l~~l~~~~q~~Eadf 91 (135)
..|-..-..+..+++-.++++..-.. |...+||. ++.+++.|++-+..+=.. ++++..+...+.-.-++.|
T Consensus 9 ~l~~~~~~~l~Lgi~l~~~t~lasig-Ll~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~Atf 87 (573)
T COG4987 9 RLYKRHKFGLLLGIVLAILTLLASIG-LLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATF 87 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444566666666666654433 34556663 344566666655554444 8899999999999999999
Q ss_pred HH-HHHhhhhh
Q psy11402 92 RY-INSRLISN 101 (135)
Q Consensus 92 R~-~l~rlr~n 101 (135)
|- .+.|++-+
T Consensus 88 rvL~~lRv~~f 98 (573)
T COG4987 88 RVLSALRVRLF 98 (573)
T ss_pred HHHHHHHHHHH
Confidence 94 45555544
No 62
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.13 E-value=71 Score=22.48 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=22.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q psy11402 28 DLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGV 68 (135)
Q Consensus 28 ~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~ 68 (135)
.|.+.|+..++--+.+.|.|=...| ..||.++++.++|..
T Consensus 47 klssefIsGilVGa~iG~llD~~ag-TsPwglIv~lllGf~ 86 (116)
T COG5336 47 KLSSEFISGILVGAGIGWLLDKFAG-TSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3556666666655555555544444 357776666665544
No 63
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=39.80 E-value=1.2e+02 Score=21.87 Aligned_cols=60 Identities=18% Similarity=0.051 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhccchhhhh-HHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHH
Q psy11402 58 VMLGYLVVSGVILTHLRRPAGRMT-VTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLT 117 (135)
Q Consensus 58 ~~~~y~~~~t~~~~~~g~~l~~l~-~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~ 117 (135)
.+++..++.+.++..+.+.++.-. .+.|.++.++-..-.+++.+......-+-++.|...
T Consensus 18 ~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 78 (168)
T PF01956_consen 18 VVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMEL 78 (168)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 455556666667777777764443 667888888888888888877655544444444333
No 64
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=36.94 E-value=51 Score=26.03 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=18.0
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy11402 6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIV 41 (135)
Q Consensus 6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li 41 (135)
-++||||+.. .+.+++.+|-..++++++.++
T Consensus 13 ~~~~~~~~~~-----~l~~HL~ELR~Rli~~li~~~ 43 (249)
T CHL00182 13 LDIEDPDLEM-----PLSEHLEELRQRLFLSLSILL 43 (249)
T ss_pred cccCCCccCC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 5789999942 345555555555555544433
No 65
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.09 E-value=55 Score=24.04 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccchhhhhHHH-HHhhhhHHHHHHh
Q psy11402 59 MLGYLVVSGVILTHLRRPAGRMTVTE-QKLEGEFRYINSR 97 (135)
Q Consensus 59 ~~~y~~~~t~~~~~~g~~l~~l~~~~-q~~EadfR~~l~r 97 (135)
++.++++..++.+++.||+.+.-.++ ++-+++...+...
T Consensus 25 ~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~ 64 (175)
T PRK14472 25 AVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSA 64 (175)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666777777655443 5555555554433
No 66
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=33.54 E-value=94 Score=22.03 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=21.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHH---HHHHHHhccchhhh
Q psy11402 30 YSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVS---GVILTHLRRPAGRM 80 (135)
Q Consensus 30 ~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~---t~~~~~~g~~l~~l 80 (135)
.++++-++-|.-+|+....+..--........|.+.+ .++..++|--+.+.
T Consensus 69 ~tGf~GgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~sl~~gl~a~~lG~~l~~~ 122 (132)
T PRK14219 69 GTGFIGSFTTFSTFSVETIQLINHSEWSIAFLYVSCSILGGLIMSGLGYTLGDF 122 (132)
T ss_pred HHHHccchhhHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554433332111122334444333 33555566555443
No 67
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=29.82 E-value=2.6e+02 Score=22.68 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=32.6
Q ss_pred HHHHhccchhhhhHHHHHh-hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402 69 ILTHLRRPAGRMTVTEQKL-EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG 132 (135)
Q Consensus 69 ~~~~~g~~l~~l~~~~q~~-EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~ 132 (135)
+.+.+.+|+.++....++. +||+... +.... ...|...+.+.|+...+.-..+
T Consensus 186 ~~~~i~~pl~~l~~~~~~i~~g~~~~~----------~~~~~-~~dEi~~l~~~~n~m~~~l~~~ 239 (461)
T PRK09470 186 LAWSLAKPARKLKNAADEVAQGNLRQH----------PELET-GPQEFRQAGASFNQMVTALERM 239 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc----------cCCCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 4455788888887766554 4555321 11122 4678888888888777665543
No 68
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=29.69 E-value=1.3e+02 Score=21.54 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=23.8
Q ss_pred ccchhhhhHHH-HHhhhhHHHHHHhhhhhcchhh
Q psy11402 74 RRPAGRMTVTE-QKLEGEFRYINSRLISNSEEIA 106 (135)
Q Consensus 74 g~~l~~l~~~~-q~~EadfR~~l~rlr~naE~IA 106 (135)
-.|++.+.+-- -+.+..|=..+.|+|++||.|=
T Consensus 77 l~PlvPL~fv~~Yq~D~ayG~kl~RIr~eAE~Il 110 (131)
T PF10166_consen 77 LIPLVPLTFVLGYQYDMAYGTKLQRIREEAERIL 110 (131)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34666666554 4566667778899999999873
No 69
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=29.24 E-value=1e+02 Score=21.79 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHH---HHHHHHhccchhh
Q psy11402 30 YSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVS---GVILTHLRRPAGR 79 (135)
Q Consensus 30 ~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~---t~~~~~~g~~l~~ 79 (135)
.++++-.+-|.-+|+....+..-........+|.+++ .++..++|.-+.+
T Consensus 66 ~tGflGgfTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~~ 118 (129)
T PRK14231 66 GTGFIGAFTTFSAFSVDTIQLVQSGAWLLAVSYVLASFIGGLIMVKFGRMLSN 118 (129)
T ss_pred HhHHhcccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443332111122344455433 3344556654443
No 70
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.48 E-value=4e+02 Score=22.86 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHhccchhhhhHHHHH-hhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402 69 ILTHLRRPAGRMTVTEQK-LEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT 133 (135)
Q Consensus 69 ~~~~~g~~l~~l~~~~q~-~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~ 133 (135)
+.+.+.+|+..+.....+ .+|||.. ++. -....|-..+...|+...++.+..+
T Consensus 212 i~~~i~~pl~~l~~~~~~ia~Gdlt~---~i~---------~~~~DEig~l~~s~n~m~~~l~~~i 265 (553)
T PRK15048 212 IRRMLLTPLAKIIAHIREIAGGNLAN---TLT---------IDGRSEMGDLAQSVSHMQRSLTDTV 265 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---CCC---------CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345578888887665543 4677642 111 1224678888888888877766543
No 71
>PRK14217 camphor resistance protein CrcB; Provisional
Probab=27.22 E-value=1.4e+02 Score=21.34 Aligned_cols=50 Identities=2% Similarity=0.034 Sum_probs=22.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHH---HHHHHHhccchhh
Q psy11402 30 YSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVS---GVILTHLRRPAGR 79 (135)
Q Consensus 30 ~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~---t~~~~~~g~~l~~ 79 (135)
.++++-.+-|.-+|+.......-..-.....+|.+.+ .++..++|.-+.+
T Consensus 72 ~tGflGgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~~ 124 (134)
T PRK14217 72 FTGFLGAFTTFSSFAAESLFMFEQGYWFKLITNILVNNVGSLSMVFIGTLVAK 124 (134)
T ss_pred HHHHhchhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443332111122344455433 3345556654444
No 72
>KOG3415|consensus
Probab=27.02 E-value=1.3e+02 Score=21.38 Aligned_cols=33 Identities=9% Similarity=-0.077 Sum_probs=16.7
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHHHhccchhh
Q psy11402 47 LTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGR 79 (135)
Q Consensus 47 L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~ 79 (135)
+|+.....|...+.+|..+++.+....-.++-+
T Consensus 59 iwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~ 91 (129)
T KOG3415|consen 59 IWGIIPLVGFLGIVLFLGISSGIVYLYYANFLK 91 (129)
T ss_pred HHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 344333333344566666676666654444433
No 73
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=26.87 E-value=1.4e+02 Score=21.42 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHH-HHhhhhHHHH
Q psy11402 57 TVMLGYLVVSGVILTHLRRPAGRMTVTE-QKLEGEFRYI 94 (135)
Q Consensus 57 ~~~~~y~~~~t~~~~~~g~~l~~l~~~~-q~~EadfR~~ 94 (135)
+.+..++++..++.+++-||+.+.-.++ ++-++++.-+
T Consensus 27 ~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~A 65 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKA 65 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556667777776654433 4444444433
No 74
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=26.80 E-value=2.1e+02 Score=20.24 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHH---HHHHHHhccc
Q psy11402 15 LTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVS---GVILTHLRRP 76 (135)
Q Consensus 15 IteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~---t~~~~~~g~~ 76 (135)
..+|.+.+ +.++++-.+-|.-+|+.......--.-+..++.|...+ +++..++|.-
T Consensus 62 ~~~~~~~~------l~tGflGglTTFSTfs~E~~~L~~~~~~~~a~~yi~~sv~~gl~a~~lG~~ 120 (126)
T COG0239 62 SSEDWRLL------LGTGFLGGLTTFSTFSLETVSLLQEGQYLLALAYILLSVLLGLLAVFLGLL 120 (126)
T ss_pred CcHHHHHH------HHHHHccchhhHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 67788888888888887765554332334445554433 2344445543
No 75
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=26.65 E-value=2.5e+02 Score=20.34 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=14.6
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhh
Q psy11402 6 NRIANPDQLLTADLDKFCDMFTDLYS 31 (135)
Q Consensus 6 ~~idNPDQRIteDi~~f~~~~~~l~~ 31 (135)
+++|||++.++++=++-.-...++..
T Consensus 119 aPv~~~~kpl~~~e~~~~~K~~~ii~ 144 (185)
T PF04647_consen 119 APVDTPNKPLDSEEKRKKLKIKSIIL 144 (185)
T ss_pred cccccccCcCChHHHHHHHHHHHHHH
Confidence 57889999884444333333333333
No 76
>PRK10815 sensor protein PhoQ; Provisional
Probab=26.43 E-value=3.4e+02 Score=23.07 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=28.2
Q ss_pred HHHHhccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402 69 ILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM 128 (135)
Q Consensus 69 ~~~~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~ 128 (135)
+.++..+|+.++..+.++.+..=|- ++. .....|...+.+.|+...++
T Consensus 211 ~~~~~~rpi~~L~~~~~~l~~~~~~---~~~---------~~~~~El~~L~~~ln~~l~~ 258 (485)
T PRK10815 211 AAWWSLRPIEALAKQVRELEEGERE---QLD---------PNPPRELTSLVRNLNRLLKN 258 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc---ccc---------CCChHHHHHHHHHHHHHHHH
Confidence 4455778998888887777543221 111 12246777776666666654
No 77
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.84 E-value=95 Score=29.00 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHH
Q psy11402 6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDI 40 (135)
Q Consensus 6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~l 40 (135)
.-.+||||||++=++.|-...+.-=..+...++|+
T Consensus 1015 ~~L~deda~Isdmar~fft~~a~KdNt~yn~fidi 1049 (1128)
T COG5098 1015 LLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDI 1049 (1128)
T ss_pred hhccCCcchHHHHHHHHHHHHHhcccchhhhhHHH
Confidence 34699999999999999888777666666666776
No 78
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=24.07 E-value=3.3e+02 Score=24.98 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHHHHHhhhhh
Q psy11402 57 TVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISN 101 (135)
Q Consensus 57 ~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~~l~rlr~n 101 (135)
.+...+++++.++..++-..+..+..+..+.+-.||-.+..+.++
T Consensus 279 i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~y 323 (823)
T PLN03192 279 IFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNF 323 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777766666655566777777777777777655544443
No 79
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=23.92 E-value=3.9e+02 Score=24.70 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHH-HHHHHHHHhccchhhhh
Q psy11402 12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLV-VSGVILTHLRRPAGRMT 81 (135)
Q Consensus 12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~-~~t~~~~~~g~~l~~l~ 81 (135)
|+-+++|+.+...........+.-.++.+++| +...+.-+...|+.+.+..+ +.-.++-++|-|+.-.+
T Consensus 183 ~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~-~~fr~~~~~llpL~~~l~sv~~tlG~m~llG~plt~~s 252 (727)
T COG1033 183 DPAIRYQILREIQKDMVVLLALAVILMVIVLY-YVFRSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITT 252 (727)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCchhHH
Confidence 45677777777776666555554444444333 22222222233444333332 33346677887776543
No 80
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=23.14 E-value=2.8e+02 Score=22.42 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHHHHHhccchhhhhHHHHH--hhhhHH
Q psy11402 65 VSGVILTHLRRPAGRMTVTEQK--LEGEFR 92 (135)
Q Consensus 65 ~~t~~~~~~g~~l~~l~~~~q~--~EadfR 92 (135)
++..+.+.+.+|+..+...-++ .++||-
T Consensus 176 l~~~l~~~i~~Pl~~l~~~~~~i~~~~~~~ 205 (407)
T PRK09966 176 LTRHLHNGLVEALKNITDVVHDVRSNRNFS 205 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3444556678899888877665 566664
No 81
>PRK09897 hypothetical protein; Provisional
Probab=22.96 E-value=1.7e+02 Score=25.70 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=41.7
Q ss_pred hccchhhhhHHHHHhh--------hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHH
Q psy11402 73 LRRPAGRMTVTEQKLE--------GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVS 127 (135)
Q Consensus 73 ~g~~l~~l~~~~q~~E--------adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~ 127 (135)
-+.|+..+-.+.++.| +.+|..+.++|++.+.|.-+=- ..|+++..+.+..+..
T Consensus 323 ~~~~~~~~r~~~~e~~~~~~~~~~~~w~~~i~~l~~~~~~iw~~l~-~~d~~rf~~~l~~~~~ 384 (534)
T PRK09897 323 QRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLN-EHDHKRFSKGLARVFI 384 (534)
T ss_pred cCCHHHHHHHhHHHHHhhhccccCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHhhhHHHH
Confidence 5667776666656554 6799999999999999998876 4678888888877743
No 82
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.40 E-value=2.6e+02 Score=20.73 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhccchhhhhHHH-HHhhhhH
Q psy11402 62 YLVVSGVILTHLRRPAGRMTVTE-QKLEGEF 91 (135)
Q Consensus 62 y~~~~t~~~~~~g~~l~~l~~~~-q~~Eadf 91 (135)
++++.-++.+++-||+.+.-.++ ++.++++
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l 71 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDL 71 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333344455566666654444 4444444
No 83
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=22.13 E-value=2e+02 Score=18.41 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=23.6
Q ss_pred HHHHHHHhccchhhhhHHHHHhhhhHHHHHHhhhhhcc
Q psy11402 66 SGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSE 103 (135)
Q Consensus 66 ~t~~~~~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE 103 (135)
..+++.++-+.=.+...+++++|..|--.+.++-+-.+
T Consensus 19 Fv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~ 56 (71)
T PF10960_consen 19 FVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLN 56 (71)
T ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566677778888888776666444333
No 84
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=22.03 E-value=4.6e+02 Score=21.68 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=39.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHH----h-hccCc--hhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHHHHHh
Q psy11402 25 MFTDLYSNICKPVLDIVIYVYRLT----S-TLGYQ--TPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSR 97 (135)
Q Consensus 25 ~~~~l~~~~~~~~~~li~f~~~L~----~-~~G~~--~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~~l~r 97 (135)
.+.+++..++.|+.-++.....+| . ..|+. .||.+.+ ++.|++.+.+--||.--..+.+++-.+.+=.+..
T Consensus 3 ~~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aI--i~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~ 80 (329)
T PRK01315 3 GLADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSI--VGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKK 80 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 456677777888666653333322 2 22321 1333222 3445566666666666666666666666555555
Q ss_pred hhh
Q psy11402 98 LIS 100 (135)
Q Consensus 98 lr~ 100 (135)
+++
T Consensus 81 iq~ 83 (329)
T PRK01315 81 IQE 83 (329)
T ss_pred HHH
Confidence 544
No 85
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=21.66 E-value=2.3e+02 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhccch
Q psy11402 59 MLGYLVVSGVILTHLRRPA 77 (135)
Q Consensus 59 ~~~y~~~~t~~~~~~g~~l 77 (135)
+..+.+.+.+...+.++|-
T Consensus 33 ~~~~~~~s~~~~~~~~~~~ 51 (81)
T PF07019_consen 33 FLSSFLVSLLYYAKAGFPD 51 (81)
T ss_pred HHHHHHHHHHHHHHhcCCh
Confidence 4555555555555555543
No 86
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=21.28 E-value=1.9e+02 Score=16.87 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=14.0
Q ss_pred HHHHHhhccCchhHHHHHHH-HHHHHHHHH--hccchh
Q psy11402 44 VYRLTSTLGYQTPTVMLGYL-VVSGVILTH--LRRPAG 78 (135)
Q Consensus 44 ~~~L~~~~G~~~~~~~~~y~-~~~t~~~~~--~g~~l~ 78 (135)
+..||+ |+.-|..+.+.. .....+.|+ +||+-.
T Consensus 4 ~V~lWK--g~~Kpl~~~~~~~~~~~~~~Hyi~vGPn~v 39 (44)
T PF09163_consen 4 SVTLWK--GVLKPLGAAGMGATAAAGFFHYITVGPNRV 39 (44)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHH--B-S
T ss_pred hHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 445665 554454433322 233345555 677643
No 87
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.63 E-value=1.5e+02 Score=20.93 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHH-HHhhhhHHH
Q psy11402 57 TVMLGYLVVSGVILTHLRRPAGRMTVTE-QKLEGEFRY 93 (135)
Q Consensus 57 ~~~~~y~~~~t~~~~~~g~~l~~l~~~~-q~~EadfR~ 93 (135)
+.++.++++..++.+++.||+.+.-.++ ++..++..-
T Consensus 9 ~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~ 46 (156)
T PRK05759 9 GQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAA 46 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666778877665444 344444433
No 88
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.35 E-value=1.5e+02 Score=21.29 Aligned_cols=33 Identities=6% Similarity=0.157 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhccchhhhhHHH-HHhhhhH
Q psy11402 59 MLGYLVVSGVILTHLRRPAGRMTVTE-QKLEGEF 91 (135)
Q Consensus 59 ~~~y~~~~t~~~~~~g~~l~~l~~~~-q~~Eadf 91 (135)
++.++++..++.+++-||+.+.-.++ +.-++++
T Consensus 15 ~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l 48 (164)
T PRK14471 15 TILFLILLLLLAKFAWKPILGAVKEREDSIKNAL 48 (164)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555556677777776655443 3334433
No 89
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.33 E-value=89 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.3
Q ss_pred HhccchhhhhHHHHHhhhhH
Q psy11402 72 HLRRPAGRMTVTEQKLEGEF 91 (135)
Q Consensus 72 ~~g~~l~~l~~~~q~~Eadf 91 (135)
-+|.++.++-.+..++|-.|
T Consensus 98 elg~~l~~ire~l~kLee~~ 117 (274)
T COG3769 98 ELGKVLEKIREKLDKLEEHF 117 (274)
T ss_pred ehhhhHHHHHHHHHHHHHHh
Confidence 48899999999998888887
No 90
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.20 E-value=3e+02 Score=19.27 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11402 117 TVLAAFNKLVSMSWKG 132 (135)
Q Consensus 117 ~l~~~f~~l~~~~~~~ 132 (135)
.-.+.++.+.++++++
T Consensus 54 ~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 54 QTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666666554
No 91
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=20.07 E-value=1.2e+02 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=10.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhh
Q psy11402 30 YSNICKPVLDIVIYVYRLTST 50 (135)
Q Consensus 30 ~~~~~~~~~~li~f~~~L~~~ 50 (135)
+..+++..+++.-+...+...
T Consensus 167 ln~LVk~mldV~~cIief~~L 187 (286)
T PF14576_consen 167 LNNLVKAMLDVTKCIIEFEEL 187 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555555544443
Done!