Query psy11402
Match_columns 135
No_of_seqs 114 out of 874
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:33:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b60_A Lipid A export ATP-bind 97.6 0.0011 3.6E-08 56.4 12.9 118 13-131 126-243 (582)
2 3b5x_A Lipid A export ATP-bind 97.6 0.001 3.5E-08 56.4 12.4 118 13-131 126-243 (582)
3 2yl4_A ATP-binding cassette SU 97.4 0.0019 6.5E-08 54.9 11.6 118 13-131 123-240 (595)
4 4a82_A Cystic fibrosis transme 97.3 0.0015 5.1E-08 55.5 10.4 118 13-131 122-239 (578)
5 3qf4_B Uncharacterized ABC tra 97.3 0.0019 6.5E-08 55.1 11.1 118 13-131 138-255 (598)
6 3qf4_A ABC transporter, ATP-bi 97.3 0.0046 1.6E-07 52.6 13.0 118 13-131 124-241 (587)
7 4f4c_A Multidrug resistance pr 96.6 0.011 3.9E-07 54.7 10.3 117 13-130 197-313 (1321)
8 3g5u_A MCG1178, multidrug resi 95.7 0.065 2.2E-06 49.6 10.3 118 13-131 169-286 (1284)
9 4f4c_A Multidrug resistance pr 93.4 0.26 9E-06 45.7 8.4 117 13-130 857-973 (1321)
10 3g5u_A MCG1178, multidrug resi 92.6 2.6 9E-05 39.0 13.8 115 13-128 812-926 (1284)
11 3b0c_W CENP-W, centromere prot 29.1 17 0.00059 22.3 0.8 24 11-34 19-42 (76)
12 3vou_A ION transport 2 domain 26.8 1.5E+02 0.005 19.9 6.9 18 36-53 52-69 (148)
13 2jo1_A Phospholemman; FXYD1, N 25.0 37 0.0013 21.0 1.7 16 85-100 54-69 (72)
14 3eff_K Voltage-gated potassium 23.1 1.7E+02 0.0057 19.3 9.7 19 35-53 39-57 (139)
15 3onj_A T-snare VTI1; helix, HA 22.8 1.3E+02 0.0045 19.1 4.3 39 85-125 4-42 (97)
16 3oa7_A Head morphogenesis prot 21.4 1.2E+02 0.004 22.5 4.1 61 68-131 14-76 (206)
No 1
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.60 E-value=0.0011 Score=56.36 Aligned_cols=118 Identities=10% Similarity=0.131 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++...+........++..++.++.....++... |...+.+++.+.+..++..+++++..+...+.++..+++-
T Consensus 126 ~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (582)
T 3b60_A 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS-WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT 204 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999888777777788888888877777776543 3333333444444445666788888888888888888888
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+.+.|-.|+.|+.+.++..+..++..+...+
T Consensus 205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3b60_A 205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 243 (582)
T ss_dssp HHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999988888877766554
No 2
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.57 E-value=0.001 Score=56.42 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++...+........++..++.++.....++.. .|...+.+++.+.+..++..+++++..+...+.++..+++-
T Consensus 126 ~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (582)
T 3b5x_A 126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN-SWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999988877777777788777777766666543 23222333333344444566678888888888888888888
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+.+.|-.++.|+.+.++.++..++..+...+
T Consensus 205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3b5x_A 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK 243 (582)
T ss_pred HHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999998888887766554
No 3
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.37 E-value=0.0019 Score=54.92 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++...+........++..++.++.....++... |...+.+++.+.+..++..+++++..+...+.++..+++-
T Consensus 123 ~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (595)
T 2yl4_A 123 NRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVS-PNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT 201 (595)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999998877766666677777777766666665432 2222333333334445556678888888888888888888
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+.+.|-.|+.|+.+.++..+..++..+...+
T Consensus 202 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 240 (595)
T 2yl4_A 202 QLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARK 240 (595)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999998888877665544
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.33 E-value=0.0015 Score=55.46 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
+|++.|++...+........++..++.++.....++...++.+ +.+++.+.+..++..+++++..+...+.++..++..
T Consensus 122 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~-l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (578)
T 4a82_A 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT-LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ 200 (578)
T ss_dssp HHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH-HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998888777777777777777777666665544332 223333333445556678888888888888899998
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+.+.|-.|+.|+.+.++.++..++..+...+
T Consensus 201 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999988888777665544
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.33 E-value=0.0019 Score=55.06 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
+|++.|++...+........++..++.++.....++...++ ..+.+++.+.+..++..+++++..+...+.++..++..
T Consensus 138 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (598)
T 3qf4_B 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI-LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLN 216 (598)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999988888777777777777777776666544322 22223333344445666778888888888888888888
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+.+.|-.|+.|+.+.++.++..++..+...+
T Consensus 217 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 255 (598)
T 3qf4_B 217 GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255 (598)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999988888877665544
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.29 E-value=0.0046 Score=52.62 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++.+.+........++.+++.++.....++... |.....+++.+.+..++..+++++..+...+.++..++.-
T Consensus 124 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (587)
T 3qf4_A 124 TRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSIN-VKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVN 202 (587)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHC-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999988888777777777776665554444333 3333333333444445556677777888888888888888
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+.+.|-.|+.|+.+.++..+..++..+...+
T Consensus 203 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (587)
T 3qf4_A 203 RVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS 241 (587)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999888887776655443
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.62 E-value=0.011 Score=54.74 Aligned_cols=117 Identities=11% Similarity=0.042 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++...+........++..+++++.....++.. +|...+.+++.+.+..++..++++...+...+.++..++.-
T Consensus 197 sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~-~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1321)
T 4f4c_A 197 TKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH-SWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAG 275 (1321)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999988777766677777777766555554432 23332333334444455666778888888888888888877
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW 130 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~ 130 (135)
........+-..|-.|+.|+.|.++..+..++..+...
T Consensus 276 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 313 (1321)
T 4f4c_A 276 KVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGV 313 (1321)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 77778888889999999999999888877776665443
No 8
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.69 E-value=0.065 Score=49.59 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++..-+.+......++..+++++.....++. ..|...+.+++.+.+..++..++++...+...++++..++.-
T Consensus 169 sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1284)
T 3g5u_A 169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFT-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAG 247 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998888877777777777776655544433 345444444444444455556677777777777777666665
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
........+...|-.|+.|+.+.++.++..++..+...+
T Consensus 248 ~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~ 286 (1284)
T 3g5u_A 248 AVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK 286 (1284)
T ss_dssp HTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 555555556677788999999999888888777665444
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.40 E-value=0.26 Score=45.73 Aligned_cols=117 Identities=10% Similarity=0.021 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|++..-+.+...+..++..++.++.....++. .+|..++.+++.+.+..++..+.++.+.+...+.++..++.-
T Consensus 857 ~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~-~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1321)
T 4f4c_A 857 TRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF-YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSG 935 (1321)
T ss_dssp HHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHH
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888877665555555666666665544443332 233333333333333344455567777666666655555554
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW 130 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~ 130 (135)
........+...|.-|+.|+.+.++..+..+...+...
T Consensus 936 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 936 KIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 44556677888889999999988888887776555443
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.65 E-value=2.6 Score=38.97 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR 92 (135)
Q Consensus 13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR 92 (135)
.|++.|+...-.........++..++.++.....++ ..+|..++.+++.+.+..++.....+.+.+...+.++.-+..-
T Consensus 812 ~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~-~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 812 TRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL-IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889888777766666666666666655444433 3455444443333333333333344444444444443333333
Q ss_pred HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402 93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM 128 (135)
Q Consensus 93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~ 128 (135)
.......++.+.|.-++.|+.+.+...+..+...++
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~ 926 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRN 926 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 345666778888888999888888877776655443
No 11
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=29.06 E-value=17 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=16.6
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhh
Q psy11402 11 PDQLLTADLDKFCDMFTDLYSNIC 34 (135)
Q Consensus 11 PDQRIteDi~~f~~~~~~l~~~~~ 34 (135)
||.||+.|........++.|...+
T Consensus 19 p~~~is~~A~~~i~~~~~~Fi~~l 42 (76)
T 3b0c_W 19 PHLRLAANTDLLVHLSFLLFLHRL 42 (76)
T ss_dssp TTCEECTTHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHH
Confidence 788898888777666665554433
No 12
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=26.78 E-value=1.5e+02 Score=19.90 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHhhccC
Q psy11402 36 PVLDIVIYVYRLTSTLGY 53 (135)
Q Consensus 36 ~~~~li~f~~~L~~~~G~ 53 (135)
+..+.++|+.+-....|.
T Consensus 52 ~~~~a~y~~~~t~tTvGy 69 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGD 69 (148)
T ss_dssp CHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHccCC
Confidence 355566666655555554
No 13
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.97 E-value=37 Score=21.05 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=12.1
Q ss_pred HHhhhhHHHHHHhhhh
Q psy11402 85 QKLEGEFRYINSRLIS 100 (135)
Q Consensus 85 q~~EadfR~~l~rlr~ 100 (135)
..-||+||...-|+-.
T Consensus 54 ~~e~g~~~~~~~~~~~ 69 (72)
T 2jo1_A 54 DEEEGTFRSSIRRLST 69 (72)
T ss_dssp CTTTSTHHHHHHHHHH
T ss_pred ccccccHHHHHHHHhh
Confidence 4568999998877743
No 14
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=23.10 E-value=1.7e+02 Score=19.28 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHhhccC
Q psy11402 35 KPVLDIVIYVYRLTSTLGY 53 (135)
Q Consensus 35 ~~~~~li~f~~~L~~~~G~ 53 (135)
.+..+.++|+.+-..+.|.
T Consensus 39 ~~~~~a~yf~~~T~tTvGy 57 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGY 57 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHheeeecccC
Confidence 4677888888887777775
No 15
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.76 E-value=1.3e+02 Score=19.07 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=28.2
Q ss_pred HHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHH
Q psy11402 85 QKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKL 125 (135)
Q Consensus 85 q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l 125 (135)
...|.+|......++...+.++-..|+ ||+..-+....-
T Consensus 4 ~~YE~df~~~~~~i~~~l~~~~~~~ge--~Rk~~i~~ie~~ 42 (97)
T 3onj_A 4 ISYESDFKTTLEQAKASLAEAPSQPLS--QRNTTLKHVEQQ 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChH--HHHHHHHHHHHH
Confidence 467889999999999999988866664 555554444443
No 16
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=21.35 E-value=1.2e+02 Score=22.49 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=39.4
Q ss_pred HHHHHhccchhhhh--HHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402 68 VILTHLRRPAGRMT--VTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK 131 (135)
Q Consensus 68 ~~~~~~g~~l~~l~--~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~ 131 (135)
++.+...|.+..-. .-.|++||+|+...+.--+=--+++= -..|.+.|..++..+..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~---l~ae~~~L~~~l~kLeGn~se 76 (206)
T 3oa7_A 14 ILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNT---LSKELDNLRSRFGNLEGNTSE 76 (206)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHccCCHHh
Confidence 35566777776554 34589999999887765432222222 467888888888887665444
Done!