RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11402
(135 letters)
>gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2.
This domain covers the transmembrane of a small family
of ABC transporters and shares sequence similarity with
pfam00664. Mutations in this domain in human ABCD3
(PMP70) are believed responsible for Zellweger
Syndrome-2; mutations in human ABCD1 (ALD) are
responsible for recessive X-linked adrenoleukodystrophy.
A Saccharomyces cerevisiae homolog is involved in the
import of long-chain fatty acids.
Length = 282
Score = 174 bits (443), Expect = 2e-55
Identities = 61/131 (46%), Positives = 91/131 (69%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
+SNLD RI NPDQ +T D++KFC +DLYSN+ KP+LDI+++ + L G+ P ++
Sbjct: 119 LSNLDGRIDNPDQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILF 178
Query: 61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
Y+++S VIL L P G++ EQ+LEG+FRY++SRLI+N+EEIAFY+G +REK +
Sbjct: 179 LYVLLSTVILRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQR 238
Query: 121 AFNKLVSMSWK 131
F L+ +
Sbjct: 239 RFKSLIDHMRR 249
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 179 bits (455), Expect = 5e-54
Identities = 73/127 (57%), Positives = 99/127 (77%)
Query: 1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
+SNLD+RI NPDQLLT D++KFCD +LYSN+ KP+LD+++Y ++L + LG P +
Sbjct: 187 VSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLF 246
Query: 61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
YL +GV+LT LR P G++TV EQ LEGE+RY++SRLI NSEEIAFYQGN+ EK TV++
Sbjct: 247 AYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMS 306
Query: 121 AFNKLVS 127
+F +LV
Sbjct: 307 SFYRLVE 313
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 73.1 bits (180), Expect = 4e-16
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 5 DNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPT------- 57
I NPDQ + D+ F + DL + + V+ ++ + L S G T
Sbjct: 144 IGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFG 203
Query: 58 -------VMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQG 110
++ Y + + ++ + RP R+ QKLE +FRY R+ N+E IA Y+G
Sbjct: 204 IPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRG 263
Query: 111 NQREK-------LTVLAAFNKLVS 127
+ E+ VL + +LV
Sbjct: 264 EKVERRRLDDRFDAVLGNWRRLVR 287
>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase.
Length = 355
Score = 28.1 bits (62), Expect = 1.4
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 4 LDNRIANPDQLLTADLDKFCD-MFTD--LYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
L NR+ NP L T +D FC+ M D + S+I LD+ + R + L Y + + L
Sbjct: 113 LANRLQNPTLLATQLMDIFCNVMVHDRGIQSSI---RLDVQAFKDRDPACLSYSSAILHL 169
Query: 61 -GYLVVSGVILTHLRRPAGR 79
GYL + + H GR
Sbjct: 170 KGYLALQAYRVAHKLWKQGR 189
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Fes subfamily; catalytic (c) domain. Fes
subfamily members include Fes (or Fps), Fer, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of
other kinases such as protein serine/threonine kinases,
RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group
from ATP to tyrosine (tyr) residues in protein
substrates. Fes subfamily proteins are cytoplasmic (or
nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. The genes for Fes (feline sarcoma)
and Fps (Fujinami poultry sarcoma) were first isolated
from tumor-causing retroviruses. The viral oncogenes
encode chimeric Fes proteins consisting of Gag
sequences at the N-termini, resulting in unregulated
tyr kinase activity. Fes and Fer kinases play roles in
haematopoiesis, inflammation and immunity, growth
factor signaling, cytoskeletal regulation, cell
migration and adhesion, and the regulation of cell-cell
interactions. Fes and Fer show redundancy in their
biological functions.
Length = 251
Score = 27.8 bits (62), Expect = 1.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 56 PTVMLGYLVVSGVILTHLRRPAGRMTVTEQ 85
P ++ LV G +LT LR+ R+TV +
Sbjct: 66 PIYIVMELVPGGSLLTFLRKKKNRLTVKKL 95
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine
phosphoribosyltransferase; Provisional.
Length = 181
Score = 26.0 bits (58), Expect = 5.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 57 TVMLGYLVVSGVILTHLRRP 76
VM G LV +G +L L P
Sbjct: 46 CVMGGGLVFTGQLLPRLDFP 65
>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 26.6 bits (59), Expect = 5.3
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 49 STLGYQTPT----------VMLGYLVVSGVILTHLRRPAGRMTVT 83
+TL YQ + +L ++ + V+L LRR R+ V
Sbjct: 708 ATLFYQVASFSQHPTYSLVCILAVILFNIVVLGLLRRARSRVDVE 752
>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase.
Members of this protein family are
4-hydroxy-2-oxovalerate aldolase, also called
4-hydroxy-2-ketovalerate aldolase and
2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of
the pathway for the meta-cleavage of catechol, produces
pyruvate and acetaldehyde. Acetaldehyde is then
converted by acetaldehyde dehydrogenase (acylating)
(DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are
tightly associated [Energy metabolism, Other].
Length = 333
Score = 26.5 bits (59), Expect = 5.4
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 11 PDQLLTADLDKF-----CDMFT--DLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYL 63
P ++ A LD+ CD+F D +I +P++D + V R T+ LGY
Sbjct: 232 PLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPLMDRPVRVDR---------ETLTLGYA 282
Query: 64 VVSGVILTHLRRPAGRMTV 82
V L H R A + V
Sbjct: 283 GVYSSFLLHAERAAAKYGV 301
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 26.0 bits (58), Expect = 7.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 17 ADLDKFCDMFTDLYSNICKPVLDIVIYV 44
AD+ +F + T L + +I YV
Sbjct: 255 ADVKRFLKLLTFLSLE---EIEEIEKYV 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,808,475
Number of extensions: 598645
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 17
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)