RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11402
         (135 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.048
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 26/95 (27%)

Query: 36  PVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYIN 95
           P   +   +   +       P+ M   L +S               +T+++++      N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPM---LSISN--------------LTQEQVQDYVNKTN 357

Query: 96  SRLISNSE-EIAFYQGNQREKLTV------LAAFN 123
           S L +  + EI+    N  + L V      L   N
Sbjct: 358 SHLPAGKQVEISLV--NGAKNLVVSGPPQSLYGLN 390



 Score = 29.2 bits (65), Expect = 0.44
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 31/119 (26%)

Query: 5   DNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLV 64
            +++   DQ+L   L +F + +  L  N      DI    + L + L  +  T ++    
Sbjct: 74  PSKVGQFDQVLNLCLTEFENCY--LEGN------DI----HALAAKLLQENDTTLV---K 118

Query: 65  VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFN 123
              +I  ++   A              R +  R        A ++        ++A F 
Sbjct: 119 TKELIKNYIT--A--------------RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161


>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
           exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
           cereus} PDB: 3q4i_A
          Length = 205

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 8/55 (14%)

Query: 43  YVYRLTSTLGYQTPTVMLGYLVV--SGVILTHLRR------PAGRMTVTEQKLEG 89
                 S  GYQTP V +  +V     ++    +       P G   V     E 
Sbjct: 54  VEKLFASETGYQTPKVDIRAVVFQNEKLLFVKEKSDGKWALPGGWADVGYTPTEV 108


>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase;
           HET: PE5; 1.93A {Bacillus subtilis}
          Length = 527

 Score = 25.5 bits (55), Expect = 6.5
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 74  RRPAGRMTVTEQKLEGEFRYINSRLISNSEEI 105
            R   R TVT  + + ++R +       +   
Sbjct: 439 YRGYVRCTVTPHQWKADYRVMPFVTEPGAAIS 470


>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
           protein, protein structure, N phosphoprotein, nuclear
           protein; HET: SAH; 2.00A {Homo sapiens}
          Length = 215

 Score = 25.3 bits (55), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 84  EQKLEG-EFRYINSRLISNSEEIAF 107
            Q+L+G  FRY+N +L S     A 
Sbjct: 2   AQRLDGARFRYLNEQLYSGPSSAAQ 26


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,031,304
Number of extensions: 111018
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 8
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)