RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11402
         (135 letters)



>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
          5759]}
          Length = 77

 Score = 27.7 bits (61), Expect = 0.17
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 1  MSNLDNRIANPDQ-LLTADLDKFCDMFTDLYSNICKPVLD 39
          ++ L+N +       +   +   C+  +   + +C  VLD
Sbjct: 12 INTLENLLTTKGADKVKDYISSLCNKASGFIATLCTKVLD 51


>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 78

 Score = 26.9 bits (59), Expect = 0.32
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTV 58
          Q L   + + CD      ++ICK  +    Y       + +  P  
Sbjct: 26 QALVEHVKEECDRLGPGMADICKNYIS--QYSEIAIQMMMHMQPKE 69


>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 74

 Score = 24.5 bits (53), Expect = 2.2
 Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 1  MSNLDNRIANPDQ-LLTADLDKFCDMFTDLYSNICKPVLD 39
          +  L   +  P Q  ++    + C      + ++C+  + 
Sbjct: 11 VQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMR 50


>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 78

 Score = 23.8 bits (51), Expect = 3.6
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 1  MSNLDNRIANPD--QLLTADLDKFCDMFTDLYSNICKPVLD 39
          +  +   I N    + +    DK C       S  C+ V+D
Sbjct: 11 VKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVD 51


>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
           Regulatory-chain, C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 53

 Score = 22.7 bits (49), Expect = 6.7
 Identities = 5/22 (22%), Positives = 13/22 (59%)

Query: 85  QKLEGEFRYINSRLISNSEEIA 106
           ++++      NS  IS++E ++
Sbjct: 1   ERIDNVLVCPNSNCISHAEPVS 22


>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain
           {Simian immunodeficiency virus [TaxId: 11723]}
          Length = 159

 Score = 23.7 bits (50), Expect = 7.3
 Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 7/47 (14%)

Query: 30  YSNICKPVLDIVIYVY--RLTSTLGYQTPTVMLGYLVVSGVILTHLR 74
            +N  + ++ + ++    +    +G  TP        +  +I T   
Sbjct: 114 QANSVETIVLMAVHCMNHKRRGGIGDMTP-----AERLINMITTEQE 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,651
Number of extensions: 20283
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)