BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11404
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila
melanogaster GN=CG13349 PE=1 SV=1
Length = 389
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 127/162 (78%), Gaps = 3/162 (1%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M M GKMVHPD RKGLVY+ QSDD LMHFCWKDR SG V +DLI+FPDD E+K+V QC T
Sbjct: 25 MNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKT 84
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQ 120
GRVYVLKFKSS R++FFW+QEPKTDKDDE R++NE+LNNPP+ + + G +GD+Q
Sbjct: 85 GRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNPPS--AHQRGGGGSNDGDLQ 142
Query: 121 NLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMRSKVQRVNNC 162
+L+NMSQQQLMQ FGG + QMGGLSSLLG M S+ N
Sbjct: 143 YMLNNMSQQQLMQLFGG-VGQMGGLSSLLGQMNSRTPSSRNT 183
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQTHERPA 223
+A++ FS+ALQS QLGPV++QF++SNEAVAA GN+E+FVRAL+ + G +P+
Sbjct: 298 QALAQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPS 356
>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2
SV=1
Length = 406
Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 114/142 (80%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQCTT
Sbjct: 31 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTT 90
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG------- 113
GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+ ++SG
Sbjct: 91 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASGGHELSAL 150
Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 151 GGEGGLQSLLGNMSHNQLMQLI 172
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQ 217
+A+SMFSAAL SGQ GP++ QF + EA+ A +G++E F +A+QN+ S Q+
Sbjct: 337 QALSMFSAALASGQHGPLMSQFGLPAEAIDAANKGDVEAFAKAMQNSVKSDQK 389
>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1
PE=2 SV=2
Length = 407
Score = 207 bits (527), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 113/142 (79%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPS 90
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGS-QRSDSSGR----- 114
GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+ S SSG
Sbjct: 91 GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGTLGASGSSGHELSAL 150
Query: 115 -VEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210
+A+ MFSAAL SGQLGP++ QF + EAV A +G++E F +A+QN
Sbjct: 338 QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN 383
>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b
PE=2 SV=1
Length = 404
Score = 207 bits (526), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 111/142 (78%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct: 30 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDCEFKRVSQCTT 89
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
GRVYVLKFK+ +++LFFW+QEPKTDKD+E+ RKVNE LNNPP PG+ S+
Sbjct: 90 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGSGSGSHELSAL 149
Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 150 GGEGGLQSLLGNMSHNQLMQLI 171
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNAS 212
+A+SMFSAAL SGQLGP++ QF + +AV A +G++E F +A+Q+ S
Sbjct: 337 QALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTS 384
>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1
PE=2 SV=1
Length = 404
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 110/142 (77%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct: 30 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTT 89
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
GRVYVLKFK+ +++LFFW+QEPKTDKD+E RKVNE LNNPP PG+ S+
Sbjct: 90 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNPPMPGALGGSGSGGHELSAL 149
Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 150 GGEGGLQSLLGNMSHNQLMQLI 171
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNAS 212
+A+SMFSAAL SGQLGP++ QF + +AV A +G++E F +A+Q S
Sbjct: 337 QALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQTTS 384
>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1
SV=2
Length = 407
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 113/142 (79%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGS-QRSDSSGR----- 114
GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+ S SSG
Sbjct: 91 GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSAL 150
Query: 115 -VEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210
+A+ MFSAAL SGQLGP++ QF + EAV A +G++E F +A+QN
Sbjct: 338 QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN 383
>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a
PE=2 SV=2
Length = 404
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 110/142 (77%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SGSV +DLIIFPDDCEFK+V QCTT
Sbjct: 30 MSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTT 89
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
GRVYVLKFK+ +++LFFW+QEPKTDKD+E RK+NE LNNPP PG+ S+
Sbjct: 90 GRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNPPMPGALGGSGSGSHELSAL 149
Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 150 GGEGGLQSLLGNMSHNQLMQLI 171
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNAS 212
+A+ MFSAAL SGQLGP++ QF + +AV A +G++E F +A+Q+ S
Sbjct: 337 QALGMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTS 384
>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1
SV=1
Length = 410
Score = 203 bits (517), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 110/141 (78%), Gaps = 6/141 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
MT+KG V PDKRKG VY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+V QCTT
Sbjct: 30 MTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVNQCTT 89
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRS------DSSGR 114
GRVYVLKFK+ +++LFFW+QEPKTDKDDE RKVNE LNNPP PG+ S + S
Sbjct: 90 GRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNPPMPGALGSGGGGGHELSAL 149
Query: 115 VEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 150 GEGGLQSLLGNMSHNQLMQLI 170
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNA 211
+A+SMFS+AL SGQLGP++ QF + +EAV A +G++E F +A++ +
Sbjct: 342 QAMSMFSSALASGQLGPLMNQFGLPSEAVDAANKGDVEAFAKAMEGS 388
>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1
SV=2
Length = 407
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 112/142 (78%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPS 90
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PGS + S+
Sbjct: 91 GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGSLGASGSSGHELSAL 150
Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210
+A+ MFSAAL SGQLGP++ QF + EAV A +G++E F +A+QN
Sbjct: 338 QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN 383
>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2
SV=1
Length = 407
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 7/142 (4%)
Query: 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTT 60
M++KG V PDKRKGLVY+ Q+DDSL+HFCWKDR SG+V +DLIIFPDDCEFK+VPQC +
Sbjct: 31 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPS 90
Query: 61 GRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD-------SSG 113
GRVYVLKFK+ +++LFFW+QEPKTD+D+E+ RKVNE LNNPP PG+ + S+
Sbjct: 91 GRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSGGHELSAL 150
Query: 114 RVEGDIQNLLSNMSQQQLMQFF 135
EG +Q+LL NMS QLMQ
Sbjct: 151 GGEGGLQSLLGNMSHSQLMQLI 172
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQ 217
+A+ MFSAAL SGQLGP++ QF + EAV A +G++E F +A+QN++ QQ
Sbjct: 338 QALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNSASPEQQ 390
>sp|Q09289|ADRM1_CAEEL Proteasomal ubiquitin receptor ADRM1 homolog OS=Caenorhabditis
elegans GN=C56G2.7 PE=3 SV=2
Length = 374
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 16/176 (9%)
Query: 2 TMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTG 61
TM+ + P +KGLV++ QS+D L+HFCWKDR++G+VV+DLIIFPDD EFK VP C G
Sbjct: 35 TMRKVVAEP--KKGLVFIKQSNDMLIHFCWKDRETGAVVDDLIIFPDDAEFKAVPGCPDG 92
Query: 62 RVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPT--PGSQRSDSSGRVEGDI 119
+VY+LKFKS + KL FW+Q+ D D + +KV + LN PPT P + RS S D
Sbjct: 93 KVYMLKFKSGDMKL-FWIQDSTPDVDKDLVKKVTDALNKPPTSRPAASRSAGS-NANTDR 150
Query: 120 QNLLSNMSQQQLMQFFGGQINQMGGLSSLLGTMR---------SKVQRVNNCTTEA 166
Q+ ++ M G I+Q G L SL+ +++ S V R + ++EA
Sbjct: 151 QSAGGSLISSSDMNAPLGGIDQ-GQLMSLIQSLQGGNSDTLPISSVPRGEDASSEA 205
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 165 EAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASIS--GQQTHERP 222
+A ALQ+GQLGPVV QF + V + QG++ F L A +T
Sbjct: 293 QAADTLGHALQTGQLGPVVAQFGMDEATVGSANQGDIRGFAANLTKAEGGEDAAKTQNSD 352
Query: 223 APETTQPEKRLKSEEKKSPDDDDDDVN 249
T +PE + + PD++D DV+
Sbjct: 353 DDATREPEPK-----RNRPDNEDMDVD 374
>sp|Q9USM1|ADRM1_SCHPO Probable proteasomal ubiquitin receptor ADRM1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC16A11.16c PE=3 SV=1
Length = 388
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 12/136 (8%)
Query: 7 MVHPDKRKGLVYVHQSDDSLMHFCWKDRQ--SGSVVEDLIIFPDDCEFKKVPQCTTGRVY 64
++ D RKG++Y+ + D L+HF WK+R S V +D IIFP++ EF K+ +CTTGRVY
Sbjct: 36 ILQADHRKGVIYMQMASDELLHFYWKERARVSREVEDDYIIFPEEAEFIKIDECTTGRVY 95
Query: 65 VLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPG---SQRSDSSGRVEGDIQN 121
LKFKSS++ F+W+QE +KD E A +N+++ +P + ++SS R D
Sbjct: 96 ALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTINSHNNSSSRGTDD--- 152
Query: 122 LLSNMSQQQLMQFFGG 137
S QL+Q FG
Sbjct: 153 ----SSTSQLLQLFGA 164
>sp|Q9Y7Y6|YOY4_SCHPO Uncharacterized protein C342.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC342.04 PE=3 SV=1
Length = 291
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 KMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVED-LIIFPDDCEFKKVPQCTTGRVY 64
K++ D KG + +++ L+HF W R ED +I+F +C F+KV +CTTGR Y
Sbjct: 18 KLLRADPEKGYIVMNRDAYGLIHFQWAKRNDLENPEDDIIVFSSECTFEKVTECTTGRAY 77
Query: 65 VLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSD 110
+LK+ SS LF+W+QE D D A ++N + + RSD
Sbjct: 78 MLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKDQDLLDPARSD 123
>sp|Q556N5|ADRM1_DICDI Proteasomal ubiquitin receptor ADRM1 homolog OS=Dictyostelium
discoideum GN=adrm1-1 PE=1 SV=1
Length = 287
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 3 MKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGR 62
+ G V D RKG + + + L W+ R S + ++ P + +F KVP C TGR
Sbjct: 17 LTGTTVTSDSRKGYLKFGVTPEGLTCVQWRPRDSSAYEDEFYFAPGESKFIKVPACKTGR 76
Query: 63 VYVLKFKSSNRKLFFWLQEPKTDKDD--ENARKVNE 96
+Y L F S++K F+WLQE + D E A KV E
Sbjct: 77 MYYLNFSGSDQKEFYWLQEANVEGDAKIEKALKVIE 112
>sp|O13563|RPN13_YEAST 26S proteasome regulatory subunit RPN13 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN13 PE=1 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 43 LIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQE 81
LI+ P + + + +GR++ L F SSN + FFWLQE
Sbjct: 66 LILIPGETMWVPIKSSKSGRIFALVF-SSNERYFFWLQE 103
>sp|P52888|THOP1_HUMAN Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2
Length = 689
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 83 KTDKD--DENARKVNEVLNNPPTPGSQRSDSSGRVEG--DIQNLLSNMSQQQLMQFFGGQ 138
+TD D +E AR E+L P TPG+ + G + G D Q S+ M F +
Sbjct: 567 QTDADPAEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTR 626
Query: 139 INQMGGLSSLLGT-MRSKVQR 158
Q G L+S +G RS + R
Sbjct: 627 FKQEGVLNSKVGMDYRSCILR 647
>sp|O45436|NHR4_CAEEL Nuclear hormone receptor family member nhr-4 OS=Caenorhabditis
elegans GN=nhr-4 PE=2 SV=2
Length = 492
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 158 RVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQQ 217
R N CTT A + A L + + NE V T+ N+ EF +Q +
Sbjct: 424 RANKCTTSAQATLRIAKFMIMLSAITSLTHLMNEGVHVTSLFNIIEFDELIQATHKTTPP 483
Query: 218 THERPAP 224
H PAP
Sbjct: 484 QHSPPAP 490
>sp|Q63789|P55G_RAT Phosphatidylinositol 3-kinase regulatory subunit gamma OS=Rattus
norvegicus GN=Pik3r3 PE=2 SV=1
Length = 461
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 76 FFWLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQLMQFF 135
F LQ+ + D + +VN+ L + P D+S +++GD L +L++ +
Sbjct: 57 FVSLQDAEWYWGDISREEVNDKLRDMPDGTFLVRDASTKMQGDYTLTLRKGGNNKLIKIY 116
Query: 136 GGQINQMGGLSSLLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPV--VQQFDVSNEAV 193
N G S L T S V+ +N+ E+++ ++ L + PV QQ + E
Sbjct: 117 HRDGNY--GFSEPL-TFNSVVELINHYHHESLAQYNPKLDVKLMYPVSRYQQDQLVKEDN 173
Query: 194 AATTQGNMEEFVRALQNASISGQQTHE 220
N++EF Q S + +E
Sbjct: 174 IDAVGKNLQEFHSQYQEKSKEYDRLYE 200
>sp|Q3U3T8|WDR62_MOUSE WD repeat-containing protein 62 OS=Mus musculus GN=Wdr62 PE=1 SV=2
Length = 1523
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 148 LLGTMRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQG--NMEEFV 205
LLG++ S + R+ EA+ ++ + S QLGP QQ + +A+T N E
Sbjct: 1412 LLGSVESVLHRLQTAFQEALDLYRMLVSSSQLGPEQQQ---AQTELASTFHWILNQLEAS 1468
Query: 206 RALQNASISGQQTHERPAP 224
+ A+++ QT P P
Sbjct: 1469 NCMAAANLAPPQTLPSPDP 1487
>sp|Q966T6|COF2_DICDI Cofilin-2 OS=Dictyostelium discoideum GN=cofC-1 PE=2 SV=1
Length = 143
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 46 FPDDCEFKKVPQC---TTGRVYVLKFKSSN--RKLFF--WLQE--PKTDK 86
FP+DC F ++ QC + V K+ SN KLFF W E P+TDK
Sbjct: 51 FPNDCNFNELTQCFKENECCIIVFKYVISNSQSKLFFIYWGSETAPQTDK 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,696,673
Number of Sequences: 539616
Number of extensions: 3551725
Number of successful extensions: 11909
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11814
Number of HSP's gapped (non-prelim): 97
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)