Query psy11404
Match_columns 251
No_of_seqs 153 out of 215
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:35:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3037|consensus 100.0 8.4E-67 1.8E-71 479.6 20.4 202 1-210 20-317 (330)
2 PF04683 Proteasom_Rpn13: Prot 100.0 8.7E-41 1.9E-45 257.9 10.2 82 1-82 3-85 (85)
3 PHA00438 hypothetical protein 40.8 68 0.0015 25.0 4.7 42 162-212 24-65 (81)
4 TIGR01204 bioW 6-carboxyhexano 39.5 53 0.0011 30.3 4.7 16 5-21 114-129 (232)
5 PRK01322 6-carboxyhexanoate--C 37.3 60 0.0013 30.1 4.7 16 5-21 122-137 (242)
6 PF05402 PqqD: Coenzyme PQQ sy 37.1 36 0.00078 24.0 2.6 27 181-211 38-64 (68)
7 PTZ00283 serine/threonine prot 31.2 53 0.0012 32.2 3.6 35 62-99 456-490 (496)
8 PF14974 DUF4511: Domain of un 29.2 44 0.00095 27.3 2.2 30 181-216 55-84 (105)
9 PF13897 GOLD_2: Golgi-dynamic 28.6 69 0.0015 27.3 3.3 22 57-78 106-132 (136)
10 PF09454 Vps23_core: Vps23 cor 28.4 86 0.0019 23.1 3.5 31 163-213 24-54 (65)
11 PF14779 BBS1: Ciliary BBSome 28.3 1.2E+02 0.0026 28.3 5.1 25 43-67 229-256 (257)
12 PF14008 Metallophos_C: Iron/z 27.3 1.1E+02 0.0024 21.7 3.8 33 11-43 30-62 (62)
13 PRK14594 rimM 16S rRNA-process 27.2 85 0.0018 26.8 3.7 29 1-29 1-29 (166)
14 PF14977 FAM194: FAM194 protei 27.1 1.4E+02 0.0031 26.9 5.3 42 43-87 18-59 (208)
15 PF07933 DUF1681: Protein of u 26.7 1.4E+02 0.0031 25.9 5.1 59 14-76 39-99 (160)
16 cd01263 PH_anillin Anillin Ple 25.9 2.9E+02 0.0063 22.7 6.5 83 13-96 3-121 (122)
17 PF08410 DUF1737: Domain of un 24.8 59 0.0013 23.4 2.0 17 85-101 12-28 (54)
18 PRK15195 fimbrial chaperone pr 24.4 5.2E+02 0.011 23.2 9.2 76 2-80 28-110 (229)
19 KOG4649|consensus 23.0 1.2E+02 0.0026 29.2 4.1 42 29-74 45-86 (354)
20 PRK09918 putative fimbrial cha 20.9 6.1E+02 0.013 22.7 8.7 74 2-79 27-106 (230)
21 PRK15188 fimbrial chaperone pr 20.2 6.5E+02 0.014 22.8 9.5 75 2-80 30-112 (228)
No 1
>KOG3037|consensus
Probab=100.00 E-value=8.4e-67 Score=479.56 Aligned_cols=202 Identities=53% Similarity=0.930 Sum_probs=175.4
Q ss_pred CcccC--cEEeecCCceEEEEEecCCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEE
Q psy11404 1 MTMKG--KMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFW 78 (251)
Q Consensus 1 M~l~g--~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFW 78 (251)
|.|.| ++|+||+|||+|||++++||||||||++|++|+||||+||||+||+|+||++|||||||+|||+|+.++||||
T Consensus 20 m~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~tGRVY~LKFkSs~~r~FFW 99 (330)
T KOG3037|consen 20 MRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKTGRVYVLKFKSSDQRLFFW 99 (330)
T ss_pred EEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCCCcEEEEEecCCCeeEEEE
Confidence 78899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcchHHHHHHHHHHhcCCCCCCCCCCCCCCCCcchHHHHhcccCHHHHHHHhcccccCCCChhhhhc--------
Q psy11404 79 LQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQLMQFFGGQINQMGGLSSLLG-------- 150 (251)
Q Consensus 79 mQe~~~~~D~~~~~~vn~~l~~p~~~~~~~s~~~~~~~~~lq~~L~~l~~~qL~ql~~~~~~~~~~L~~iL~-------- 150 (251)
|||+++++|+++|++||+|||+||++....+++.+ +.|+++++.++++++|. .+++.+|..++.
T Consensus 100 MQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~-------~~l~~~~~s~~~~lfgg-~~~~~~L~~~~~e~l~~~~~ 171 (330)
T KOG3037|consen 100 MQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSG-------SMLNDDSKSQLMQLFGG-SGMNDGLEALTVEQLNSLAE 171 (330)
T ss_pred eecCCCCcCHHHHHHHHHHHcCCCccccccccccc-------cccccccHHHHHhhcCc-ccccchhhhhhHhhhccccc
Confidence 99999999999999999999999988776544432 45677889999999883 233334333331
Q ss_pred ccc--------------------C-----c----------------------------------------------CCC-
Q psy11404 151 TMR--------------------S-----K----------------------------------------------VQR- 158 (251)
Q Consensus 151 ~~~--------------------~-----~----------------------------------------------~p~- 158 (251)
..+ . + .|+
T Consensus 172 s~~~s~~~~~~~~t~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~vdLa~vL~~e~v~~vl~~~~v~erL~phl 251 (330)
T KOG3037|consen 172 SNESSLPGNSVPQTPESSVSGPESPSEPNKEEDVSNSLSTLSPQIGFGASTVDLATVLKPEAVAPVLANPGVQERLMPHL 251 (330)
T ss_pred CccccccccccccCccccccCCCCCCccccchhhcccccCCchhccCCccceehhhhcChHHHHHHhhCcchhhhhcccC
Confidence 000 0 0 000
Q ss_pred --------------CChhHHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHHH
Q psy11404 159 --------------VNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQN 210 (251)
Q Consensus 159 --------------~~~qFqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~ 210 (251)
.+|||+|||++|++||+||||+|+|.||||+.++++++++|+|++|++||++
T Consensus 252 P~d~~~~~~i~e~l~spqF~qal~sfs~aL~sgql~~~i~qfgl~~~~~~sa~~g~v~~F~~aL~~ 317 (330)
T KOG3037|consen 252 PSDHDRAEGILELLTSPQFRQALDSFSQALQSGQLGPVICQFGLDLEAVASANEGDVEAFLKALER 317 (330)
T ss_pred CCCCcchHHHHHhhcCHHHHHHHHHHHHHHhcccccchhhhcCCchhhhcccccccHHHHHHHHHh
Confidence 3559999999999999999999999999999999999999999999999999
No 2
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=100.00 E-value=8.7e-41 Score=257.93 Aligned_cols=82 Identities=65% Similarity=1.281 Sum_probs=70.5
Q ss_pred CcccCcEEeecCCceEEEEEecCCCceeEEEeeCCC-CCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEe
Q psy11404 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQS-GSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWL 79 (251)
Q Consensus 1 M~l~g~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~t-g~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWm 79 (251)
|.++|++|+||+|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++|+|||||+|||++|++||||||
T Consensus 3 ~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fFWm 82 (85)
T PF04683_consen 3 MDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFFWM 82 (85)
T ss_dssp EEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEEEE
T ss_pred EEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEEEe
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy11404 80 QEP 82 (251)
Q Consensus 80 Qe~ 82 (251)
|||
T Consensus 83 Qe~ 85 (85)
T PF04683_consen 83 QEP 85 (85)
T ss_dssp -SS
T ss_pred cCC
Confidence 996
No 3
>PHA00438 hypothetical protein
Probab=40.78 E-value=68 Score=25.02 Aligned_cols=42 Identities=26% Similarity=0.184 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHHHhh
Q psy11404 162 CTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNAS 212 (251)
Q Consensus 162 qFqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~ 212 (251)
+|-|..=.++++.+||.++ .|.|=|+.++. |.+|+.+++=++
T Consensus 24 eyLqvrfNasYl~~sG~i~-~lR~~G~SE~~--------IaGfl~Gl~yAs 65 (81)
T PHA00438 24 EYLQVRFNASYLEQSGEIR-LLRQAGYSEAF--------IAGFLAGLQYAS 65 (81)
T ss_pred HHHHHHHhHHHHHHhhhHH-HHHHcCCcHHH--------HHHHHHHHHHHH
Confidence 7888888899999999997 68889998764 678888887554
No 4
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=39.50 E-value=53 Score=30.27 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=12.8
Q ss_pred CcEEeecCCceEEEEEe
Q psy11404 5 GKMVHPDKRKGLVYVHQ 21 (251)
Q Consensus 5 g~~V~Pd~rKG~l~i~~ 21 (251)
|.++.||..||+ ++..
T Consensus 114 G~RLe~d~~RGV-Rvs~ 129 (232)
T TIGR01204 114 GERLDEDKEKGV-RVSR 129 (232)
T ss_pred CccccCCCCcce-EEEe
Confidence 999999999997 4443
No 5
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=37.25 E-value=60 Score=30.07 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=12.9
Q ss_pred CcEEeecCCceEEEEEe
Q psy11404 5 GKMVHPDKRKGLVYVHQ 21 (251)
Q Consensus 5 g~~V~Pd~rKG~l~i~~ 21 (251)
|.++.||+.||+ ++..
T Consensus 122 G~RLe~d~~RGV-Rvs~ 137 (242)
T PRK01322 122 GERLEPDKERGV-RVTN 137 (242)
T ss_pred CccccCCCCcce-EEEe
Confidence 899999999997 4443
No 6
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=37.05 E-value=36 Score=23.97 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=19.1
Q ss_pred hhhhhcCCChHHHhhcccCcHHHHHHHHHHh
Q psy11404 181 PVVQQFDVSNEAVAATTQGNMEEFVRALQNA 211 (251)
Q Consensus 181 pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~ 211 (251)
.|.++|+.+++.+.. +|..|++.|.+.
T Consensus 38 ~l~~~y~~~~~~~~~----dv~~fl~~L~~~ 64 (68)
T PF05402_consen 38 ALAEEYDVDPEEAEE----DVEEFLEQLREK 64 (68)
T ss_dssp HHHHHTT--HHHHHH----HHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHH----HHHHHHHHHHHC
Confidence 345679999886543 999999999874
No 7
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=31.21 E-value=53 Score=32.24 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=28.5
Q ss_pred eEEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhc
Q psy11404 62 RVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLN 99 (251)
Q Consensus 62 RVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~ 99 (251)
-||+|.|+. +++ ||.|..+.+.=+.++.+|...|.
T Consensus 456 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 456 HVFAVAFKT-GRR--LLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred cEEEEEecC-CcE--EEEecCCchhHHHHHHHHHHhcC
Confidence 799999975 443 78899988777799999998875
No 8
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=29.19 E-value=44 Score=27.26 Aligned_cols=30 Identities=7% Similarity=0.317 Sum_probs=24.5
Q ss_pred hhhhhcCCChHHHhhcccCcHHHHHHHHHHhhccCC
Q psy11404 181 PVVQQFDVSNEAVAATTQGNMEEFVRALQNASISGQ 216 (251)
Q Consensus 181 pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~~~~ 216 (251)
+|+..+|++ .+.+||..|++.|+..++.++
T Consensus 55 ~VIk~yGF~------~~~eG~~~f~~~i~~~e~~D~ 84 (105)
T PF14974_consen 55 EVIKKYGFP------ESREGVMQFAQLIRELEKDDP 84 (105)
T ss_pred HHHHHcCCC------CCcchHHHHHHHHHHHHccCH
Confidence 577789996 356699999999999987763
No 9
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=28.65 E-value=69 Score=27.31 Aligned_cols=22 Identities=45% Similarity=0.904 Sum_probs=15.6
Q ss_pred CCCCCeEEEEEEecC-----CceeEEE
Q psy11404 57 QCTTGRVYVLKFKSS-----NRKLFFW 78 (251)
Q Consensus 57 ~c~tGRVyvLkF~ss-----~~k~FFW 78 (251)
.|+.--||+|||.+| +++.+|.
T Consensus 106 ~c~~~GvYvLkFDNSYS~~rsK~l~Y~ 132 (136)
T PF13897_consen 106 TCPGPGVYVLKFDNSYSWFRSKKLYYR 132 (136)
T ss_pred ECCCCeEEEEEeeCcceeEEeeEEEEE
Confidence 476557999999764 4566665
No 10
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.41 E-value=86 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.458 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHHHhhc
Q psy11404 163 TTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASI 213 (251)
Q Consensus 163 FqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~ 213 (251)
-.-++..++.||+.|.++ ++.|+|.++.-++
T Consensus 24 ieDtiy~L~~al~~g~I~--------------------~d~~lK~vR~LaR 54 (65)
T PF09454_consen 24 IEDTIYYLDRALQRGSID--------------------LDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHTTSS---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC--------------------HHHHHHHHHHHHH
Confidence 356788899999998863 7888888887654
No 11
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=28.30 E-value=1.2e+02 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.724 Sum_probs=20.4
Q ss_pred EEecCC---CceEEEecCCCCCeEEEEE
Q psy11404 43 LIIFPD---DCEFKKVPQCTTGRVYVLK 67 (251)
Q Consensus 43 lIifPg---d~~F~kV~~c~tGRVyvLk 67 (251)
+|..=| |+.|.-|=.|.+|+||.||
T Consensus 229 ~i~~~G~~devdyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 229 FISVSGQYDEVDYRIVVACRDGKIYTIR 256 (257)
T ss_pred EEEEEeeeeccceEEEEEeCCCEEEEEe
Confidence 455556 6888888899999999997
No 12
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=27.26 E-value=1.1e+02 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=20.3
Q ss_pred cCCceEEEEEecCCCceeEEEeeCCCCCccccE
Q psy11404 11 DKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDL 43 (251)
Q Consensus 11 d~rKG~l~i~~~~d~L~hf~W~~R~tg~vEddl 43 (251)
+..-|..+|......-++|+|..-.+|.|-|+|
T Consensus 30 ~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~f 62 (62)
T PF14008_consen 30 DSEYGYGRLTVANATHLHWEFIRSDDGSVLDEF 62 (62)
T ss_dssp E---EEEEEEE-SSSEEEEEEEETTS-T-CEE-
T ss_pred ccccCEEEEEEEcCCeEEEEEEECCCCcEecCC
Confidence 356688888766778899999887777776653
No 13
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=27.15 E-value=85 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=24.1
Q ss_pred CcccCcEEeecCCceEEEEEecCCCceeE
Q psy11404 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHF 29 (251)
Q Consensus 1 M~l~g~~V~Pd~rKG~l~i~~~~d~L~hf 29 (251)
|.+-|+++.|---||.|+|....|..-+|
T Consensus 1 ~~~iG~I~~~hGlkGevkV~~~td~~~~~ 29 (166)
T PRK14594 1 MFVKGIILSSYGINGYAKVKSISNNFCDF 29 (166)
T ss_pred CEEEEEEECceeeeEEEEEEEccCCHHHh
Confidence 78889999999999999999876644443
No 14
>PF14977 FAM194: FAM194 protein
Probab=27.08 E-value=1.4e+02 Score=26.87 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=34.5
Q ss_pred EEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEecCCCCcch
Q psy11404 43 LIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKD 87 (251)
Q Consensus 43 lIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~~~~D 87 (251)
.++||+..-|.-.|+ |+|-++....-..++-||.+|...+..
T Consensus 18 ~~~f~DGsg~i~YPS---GnlAi~~~~~~~~~~~~~v~eD~~~~~ 59 (208)
T PF14977_consen 18 HYMFPDGSGQIFYPS---GNLAICISPTCRGGFTYIVYEDSPENT 59 (208)
T ss_pred EEEcCCCCEEEEeCC---CCEEEEEeccCCCceEEEEEecCCCCc
Confidence 588999999998876 899999987645568899999887653
No 15
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=26.66 E-value=1.4e+02 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=26.8
Q ss_pred ceEEEEEecCCCc-eeEEEeeCCCCCccccEEecCCCceEEEecCCC-CCeEEEEEEecCCceeE
Q psy11404 14 KGLVYVHQSDDSL-MHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCT-TGRVYVLKFKSSNRKLF 76 (251)
Q Consensus 14 KG~l~i~~~~d~L-~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~-tGRVyvLkF~ss~~k~F 76 (251)
.|-|+|....+.+ +.+.-.+..||.+ |.-.|-+.. .-|+.|. +.|-|+|+..+.+.||-
T Consensus 39 tGrlrV~~~g~~~~v~i~leD~~tgeL---FA~~P~~~~-~~VE~v~DSSRYFvlRv~d~~Gr~A 99 (160)
T PF07933_consen 39 TGRLRVVEKGDKCKVDIRLEDPSTGEL---FAQCPYDDY-AAVEPVIDSSRYFVLRVQDPSGRHA 99 (160)
T ss_dssp EEEEEEE--SSSE--EEEEE-SS--SS----EEEEE-SS---EEE-TT--S-EEEEEEETTTEEE
T ss_pred eeEEEEEEcCCeeEEEEEecCCCCcce---EEECcccCC-CceEEeecccceEEEEEEcCCCcEE
Confidence 4777777655543 4566677777753 222332222 4555554 34999999987533443
No 16
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.92 E-value=2.9e+02 Score=22.70 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=45.9
Q ss_pred CceEEEEEecCCC-------------ceeEEEeeCCCCCcc--ccEEecCCCceEEEec-----CCCCCeEEEEEEe---
Q psy11404 13 RKGLVYVHQSDDS-------------LMHFCWKDRQSGSVV--EDLIIFPDDCEFKKVP-----QCTTGRVYVLKFK--- 69 (251)
Q Consensus 13 rKG~l~i~~~~d~-------------L~hf~W~~R~tg~vE--ddlIifPgd~~F~kV~-----~c~tGRVyvLkF~--- 69 (251)
-+|.|.|+++-.+ -+-++|+........ .-.|-+ ..|.-.+|. .|.--+.|.|...
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L-~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~ 81 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDL-STCTSSEGASAVRDICARPNTFHLDVWRPK 81 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEh-hhCcccccccCChhhcCCCCeEEEEEeccc
Confidence 3688888764322 222566543321111 122233 446666674 6766677888763
Q ss_pred -------------cCCceeEEEecCCCCcchHHHHHHHHH
Q psy11404 70 -------------SSNRKLFFWLQEPKTDKDDENARKVNE 96 (251)
Q Consensus 70 -------------ss~~k~FFWmQe~~~~~D~~~~~~vn~ 96 (251)
+.-.+.|+||=-.+.+.=.+.+..||+
T Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 223477888865444444577777775
No 17
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=24.76 E-value=59 Score=23.44 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHhcCC
Q psy11404 85 DKDDENARKVNEVLNNP 101 (251)
Q Consensus 85 ~~D~~~~~~vn~~l~~p 101 (251)
..|.++|+||++.|+..
T Consensus 12 ~d~~~fc~rVt~aL~~G 28 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEG 28 (54)
T ss_pred CChHHHHHHHHHHHHcC
Confidence 45789999999999973
No 18
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=24.42 E-value=5.2e+02 Score=23.22 Aligned_cols=76 Identities=13% Similarity=0.287 Sum_probs=42.4
Q ss_pred cccCcEEeecCCce--EEEEEecC-C-CceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEe---cCCce
Q psy11404 2 TMKGKMVHPDKRKG--LVYVHQSD-D-SLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFK---SSNRK 74 (251)
Q Consensus 2 ~l~g~~V~Pd~rKG--~l~i~~~~-d-~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~---ss~~k 74 (251)
.+++++|.=...+. .|.|.-.+ + -.+-..|.+...+..+.+||+.|- +-|++--....|=+++-. ..++-
T Consensus 28 ~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPP---lfrl~p~~~q~lRIi~~~~~LP~DrE 104 (229)
T PRK15195 28 ALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPP---LFVSEPKSENTLRIIYAGPPLAADRE 104 (229)
T ss_pred EECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCCCCee
Confidence 45677775444433 34443333 3 255567997544444468999998 777766332222222211 23577
Q ss_pred eEEEec
Q psy11404 75 LFFWLQ 80 (251)
Q Consensus 75 ~FFWmQ 80 (251)
..||+=
T Consensus 105 Slf~Ln 110 (229)
T PRK15195 105 SLFWMN 110 (229)
T ss_pred EEEEEE
Confidence 889984
No 19
>KOG4649|consensus
Probab=22.98 E-value=1.2e+02 Score=29.20 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=29.2
Q ss_pred EEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEecCCce
Q psy11404 29 FCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRK 74 (251)
Q Consensus 29 f~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k 74 (251)
+.|.---.+.+|-.-|+. || | -|=.|..|.+|.|+|++..+.
T Consensus 45 ~~We~ilg~RiE~sa~vv-gd--f-VV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 45 LIWEAILGVRIECSAIVV-GD--F-VVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred EEeehhhCceeeeeeEEE-CC--E-EEEEEccCcEEEEEecchhhe
Confidence 567655456677666664 33 3 455799999999999876553
No 20
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.86 E-value=6.1e+02 Score=22.66 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=40.1
Q ss_pred cccCcEEeecCCce--EEEEEecCC-CceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEe---cCCcee
Q psy11404 2 TMKGKMVHPDKRKG--LVYVHQSDD-SLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFK---SSNRKL 75 (251)
Q Consensus 2 ~l~g~~V~Pd~rKG--~l~i~~~~d-~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~---ss~~k~ 75 (251)
.+.+++|.-+..+. .|.|.-..+ -.+--.|.+........+||+.|- ..|++.- ...+..+.+. ..++-.
T Consensus 27 ~l~~tRvi~~~~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPP---l~rl~pg-~~q~vRii~~~~lp~drEs 102 (230)
T PRK09918 27 VPETSVVIVEESDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPP---VARVEPG-QSQQVRFILKSGSPLNTEH 102 (230)
T ss_pred EEccEEEEEECCCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCC---eEEECCC-CceEEEEEECCCCCCCeeE
Confidence 35677776665554 445543333 344467987544334468999998 5566542 1222222222 235667
Q ss_pred EEEe
Q psy11404 76 FFWL 79 (251)
Q Consensus 76 FFWm 79 (251)
.||+
T Consensus 103 ~f~l 106 (230)
T PRK09918 103 LLRV 106 (230)
T ss_pred EEEE
Confidence 7776
No 21
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=20.24 E-value=6.5e+02 Score=22.77 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=43.9
Q ss_pred cccCcEEeecC--CceEEEEEecC-C-CceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEec----CCc
Q psy11404 2 TMKGKMVHPDK--RKGLVYVHQSD-D-SLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKS----SNR 73 (251)
Q Consensus 2 ~l~g~~V~Pd~--rKG~l~i~~~~-d-~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~s----s~~ 73 (251)
.+.+++|.=.. +-..|.|.-.. + -.+.-.|.+...+....+||+.|- .-|++.- .+++..+.+.. .++
T Consensus 30 ~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPP---lfrl~~~-~~~~lRI~~~~~~lP~DR 105 (228)
T PRK15188 30 ALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP---LFVIQPK-KENILRIMYVGPSLPTDR 105 (228)
T ss_pred EECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCC---eEEECCC-CceEEEEEECCCCCCCCc
Confidence 35666664333 33345554443 3 256678997554544467999998 7777663 33344333332 467
Q ss_pred eeEEEec
Q psy11404 74 KLFFWLQ 80 (251)
Q Consensus 74 k~FFWmQ 80 (251)
-..||+=
T Consensus 106 ESlf~ln 112 (228)
T PRK15188 106 ESVFYLN 112 (228)
T ss_pred eEEEEEE
Confidence 7899984
Done!