Query psy11404
Match_columns 251
No_of_seqs 153 out of 215
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:35:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr0_A Proteasomal ubiquitin r 100.0 2.6E-66 9E-71 493.0 17.5 215 1-215 35-392 (411)
2 2r2y_A Protein ADRM1; proteaso 100.0 1.6E-47 5.3E-52 322.6 12.9 111 1-111 34-144 (153)
3 4b4t_X 26S proteasome regulato 100.0 2.8E-41 9.6E-46 285.4 9.9 102 1-103 15-134 (156)
4 2kqz_A Proteasomal ubiquitin r 99.7 1.5E-16 5E-21 134.2 12.2 57 159-215 80-136 (155)
5 2kzb_A Autophagy-related prote 46.6 13 0.00045 29.2 2.9 39 23-68 20-58 (118)
6 1klf_A FIMC chaperone, chapero 43.2 1.1E+02 0.0037 25.7 8.4 73 2-79 3-85 (205)
7 3pp2_A RHO GTPase-activating p 41.2 33 0.0011 26.0 4.4 49 50-99 75-123 (124)
8 2co7_B SAFB chaperone, putativ 37.8 1.9E+02 0.0064 24.5 9.5 74 2-79 15-95 (221)
9 2xg5_A PAPD, chaperone protein 37.4 1.9E+02 0.0064 24.5 9.3 73 2-79 3-88 (218)
10 3q5w_A Protein CUT8; proteasom 34.2 32 0.0011 30.7 3.7 30 118-147 54-83 (245)
11 2dn6_A KIAA0640 protein; PH do 33.6 77 0.0026 22.5 5.2 55 43-100 50-104 (115)
12 1z8r_A Coxsackievirus B4 polyp 30.5 24 0.0008 29.8 2.1 23 57-83 73-104 (166)
13 2hrv_A 2A cysteine proteinase; 30.5 23 0.00077 29.2 2.0 23 57-83 53-84 (142)
14 3q6k_A 43.2 kDa salivary prote 28.3 27 0.00094 32.4 2.4 53 9-67 281-341 (381)
15 4djm_A DRAB; chaperone, PILI; 23.1 3.2E+02 0.011 23.5 8.1 75 2-80 25-106 (239)
16 2f6m_A Suppressor protein STP2 22.7 76 0.0026 22.7 3.3 17 164-180 19-35 (65)
17 1tqz_A Necap1; endocytosis, st 20.7 3.3E+02 0.011 21.9 7.2 60 14-77 44-105 (133)
18 1pls_A Pleckstrin homology dom 20.3 2.3E+02 0.008 19.9 6.0 36 63-101 68-103 (113)
19 2kzk_A Uncharacterized protein 20.1 79 0.0027 24.3 3.1 43 17-68 9-52 (107)
No 1
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=100.00 E-value=2.6e-66 Score=493.02 Aligned_cols=215 Identities=56% Similarity=0.995 Sum_probs=182.6
Q ss_pred CcccCcEEeecCCceEEEEEecCCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEec
Q psy11404 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQ 80 (251)
Q Consensus 1 M~l~g~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQ 80 (251)
|.++|++|+||+|||+|||++.+|+|+||||++|+++.+|||+||||+|++|+||++|||||||+|||+++++|||||||
T Consensus 35 ~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~P~d~~f~~V~~c~tGRVyvLkF~ss~~r~fFWmQ 114 (411)
T 2kr0_A 35 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQ 114 (411)
T ss_dssp EEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEECTTSEEEEECTTCSSSCEEEEEETTTCCEEEEEEC
T ss_pred EEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEcCCceEEEECCCCCCCeEEEEEecCCCceeEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHhcCCCCCCCCCCCCCC-------CCcchHHHHhcccCHHHHHHHhcc-cccCCCC--------
Q psy11404 81 EPKTDKDDENARKVNEVLNNPPTPGSQRSDSSG-------RVEGDIQNLLSNMSQQQLMQFFGG-QINQMGG-------- 144 (251)
Q Consensus 81 e~~~~~D~~~~~~vn~~l~~p~~~~~~~s~~~~-------~~~~~lq~~L~~l~~~qL~ql~~~-~~~~~~~-------- 144 (251)
|+++++|+++|++||++|++++.+.+..+++++ +..+++|.+|+||+++|||||++. +++++++
T Consensus 115 e~~~~~D~~~~~~vN~ll~~~~~~~~~~~~gs~~~~~~~~g~e~dl~~~~~~~sq~qlmql~g~~g~~~~~gl~~~~gp~ 194 (411)
T 2kr0_A 115 EPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 194 (411)
T ss_dssp CSCGGGHHHHHHHHHHHHHSCSCCSCSCCCSSCCCCSSCCCSCCCSCSCSSCCCSCCSSCCCCSSCCCSTTCSCCCCCCS
T ss_pred CCCcccHHHHHHHHHHHHhCCcccccccccCccccccccccccchhhhccccccHHHHHHhhhccccccccccccccCcc
Confidence 999999999999999999998876544333322 125678899999999999999983 1111111
Q ss_pred --------------------------------------------------------------------------------
Q psy11404 145 -------------------------------------------------------------------------------- 144 (251)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (251)
T Consensus 195 ~~~~~~s~~~~~~~~s~~~~~~~~~~tp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~dLq~i 274 (411)
T 2kr0_A 195 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSI 274 (411)
T ss_dssp TTTTTCSCCCCSSSCCCCSCCCCCCCCTTSCCCCCCSCCCCCCCSSCCCSSCCCCSCCSSSSSTTTSCCCCSSHHHHHHH
T ss_pred cccccccCCCccccccccccccccccccccccccccccccccccccccccccccccccccCCccccccCCcccHHHHHHH
Confidence
Q ss_pred -----------------hhhhhcc------ccC-----c----CC---------------CCChhHHHHHHHHHHHHhcC
Q psy11404 145 -----------------LSSLLGT------MRS-----K----VQ---------------RVNNCTTEAVSMFSAALQSG 177 (251)
Q Consensus 145 -----------------L~~iL~~------~~~-----~----~p---------------~~~~qFqQal~~fs~AL~sG 177 (251)
|++||+. +.. + .| -.+|||+|||++|++|||+|
T Consensus 275 Lasl~~~~~~~~~~~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL~sG 354 (411)
T 2kr0_A 275 LATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASG 354 (411)
T ss_dssp HHHHTSSSCTTCSHHHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccccccCCCCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 2222210 000 0 11 14679999999999999999
Q ss_pred CcchhhhhcCCChHHHhhcccCcHHHHHHHHHHhhccC
Q psy11404 178 QLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISG 215 (251)
Q Consensus 178 ql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~~~ 215 (251)
||+|||+||||+++++.||++|+||+|++||++.++++
T Consensus 355 qL~pll~qfgL~~~~~~aa~~G~VeaFl~al~~~~~~~ 392 (411)
T 2kr0_A 355 QLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPE 392 (411)
T ss_dssp SSTHHHHHHTCCHHHHHHHHHTCHHHHHHHHHHTCSSS
T ss_pred CchHHHHHhCCChhhhhhhccCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999876
No 2
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=100.00 E-value=1.6e-47 Score=322.56 Aligned_cols=111 Identities=70% Similarity=1.318 Sum_probs=98.7
Q ss_pred CcccCcEEeecCCceEEEEEecCCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEec
Q psy11404 1 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQ 80 (251)
Q Consensus 1 M~l~g~~V~Pd~rKG~l~i~~~~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQ 80 (251)
|.++|++|+||+|||+|||++++|+|+||||++|+++.+|||+||||||++|++|++|+|||||+|||+++++|||||||
T Consensus 34 m~l~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~vEdDlIi~P~d~~F~kV~~c~tGRVyvLkF~ss~~r~FFWmQ 113 (153)
T 2r2y_A 34 MSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQ 113 (153)
T ss_dssp EEEETTEEEECCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECCTTSEEEEECTTCTTSCEEEEEETTTCCEEEEEEC
T ss_pred EEecCCEEeECCCCEEEEEEECCCCcEEEEEecCCCCCccceEEEcCCCeEEEECCCCCCCeEEEEEecCCCceEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHhcCCCCCCCCCCCC
Q psy11404 81 EPKTDKDDENARKVNEVLNNPPTPGSQRSDS 111 (251)
Q Consensus 81 e~~~~~D~~~~~~vn~~l~~p~~~~~~~s~~ 111 (251)
|+++++|+++|++||++|++||++.+..+++
T Consensus 114 e~~~~~D~~~~~kvN~lL~~p~~~~~~~~~~ 144 (153)
T 2r2y_A 114 EPKTDQDEEHCRKVNECLNNPPMPGSLGASG 144 (153)
T ss_dssp SSSSTTHHHHHHHHHHHHHC-----------
T ss_pred CCCcccHHHHHHHHHHHHcCCCCCCcccCCC
Confidence 9999999999999999999999877654443
No 3
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=100.00 E-value=2.8e-41 Score=285.42 Aligned_cols=102 Identities=27% Similarity=0.536 Sum_probs=90.9
Q ss_pred CcccC--cEEeecCCceEEEEEecCC---CceeEEEeeCCCCCcc----ccEEecCCCceEEEecCCCCCeEEEEEEecC
Q psy11404 1 MTMKG--KMVHPDKRKGLVYVHQSDD---SLMHFCWKDRQSGSVV----EDLIIFPDDCEFKKVPQCTTGRVYVLKFKSS 71 (251)
Q Consensus 1 M~l~g--~~V~Pd~rKG~l~i~~~~d---~L~hf~W~~R~tg~vE----ddlIifPgd~~F~kV~~c~tGRVyvLkF~ss 71 (251)
|.+++ ++|+|++|||+|||++++| ||+||||++|+++..+ +|+||||||++|++|++|+|||||+||| +|
T Consensus 15 ~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~~~~~~dlii~P~d~~f~~v~~c~tGRVyvLkF-ss 93 (156)
T 4b4t_X 15 CEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLILIPGETMWVPIKSSKSGRIFALVF-SS 93 (156)
T ss_dssp EEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSCCCCCCEECCCTTTSEEECCSSCSSCCEEEEEC-SS
T ss_pred EEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcCCCCccceEEcCCceEEEEcCCCCCcEEEEEEe-cC
Confidence 45654 6999999999999999887 6999999999886443 5999999999999999999999999999 67
Q ss_pred CceeEEEecCCCC---------cchHHHHHHHHHHhcCCCC
Q psy11404 72 NRKLFFWLQEPKT---------DKDDENARKVNEVLNNPPT 103 (251)
Q Consensus 72 ~~k~FFWmQe~~~---------~~D~~~~~~vn~~l~~p~~ 103 (251)
++|||||||+++. ++|+++|++||++|+++..
T Consensus 94 ~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL~~~~~ 134 (156)
T 4b4t_X 94 NERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVLNNSSE 134 (156)
T ss_dssp SCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHHHCC--
T ss_pred CCcEEEEeecCCccCCcccccchhHHHHHHHHHHHhcCCcc
Confidence 8999999999984 7899999999999999754
No 4
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=99.69 E-value=1.5e-16 Score=134.18 Aligned_cols=57 Identities=44% Similarity=0.669 Sum_probs=54.9
Q ss_pred CChhHHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHHHhhccC
Q psy11404 159 VNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASISG 215 (251)
Q Consensus 159 ~~~qFqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~~~ 215 (251)
.+|||+||+++|++|||+|++++|++||||+++++.++++|+|++|++||++.+++.
T Consensus 80 ~SPQF~Qal~~fs~AL~sG~l~~vl~qfgl~~~~~~~a~~g~Ve~Fl~al~~~~~~~ 136 (155)
T 2kqz_A 80 TSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPE 136 (155)
T ss_dssp CSHHHHHHHHHHHHHHHHTSSHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHCSCS
T ss_pred cCHHHHHHHHHHHHHHHhCCcHHHHHHcCCChhhhhhhccCCHHHHHHHHHHHHhcc
Confidence 467999999999999999999999999999999999999999999999999999876
No 5
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=46.65 E-value=13 Score=29.19 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEE
Q psy11404 23 DDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKF 68 (251)
Q Consensus 23 ~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF 68 (251)
.|.++||+-.+.+ -+++||+|+|+--....---|+..+.
T Consensus 20 rDnsL~F~lyNnt-------n~~lpGnCtl~fs~~g~~ptv~si~m 58 (118)
T 2kzb_A 20 RDNSLYFQLFNNT-------NSVLAGNCKLKFTDAGDKPTTQIIDM 58 (118)
T ss_dssp ETTEEEEEEEECS-------SSCCCSSCEECCCSSSSSCCCCCEEC
T ss_pred CCCeEEEEEecCC-------ceeccCccEEEEecCCCCceEEEEec
Confidence 6888999998876 35789999998843221113666654
No 6
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=43.22 E-value=1.1e+02 Score=25.72 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=44.4
Q ss_pred cccCcEEeecCCc--eEEEEEecCCC---ceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEE-ec----C
Q psy11404 2 TMKGKMVHPDKRK--GLVYVHQSDDS---LMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKF-KS----S 71 (251)
Q Consensus 2 ~l~g~~V~Pd~rK--G~l~i~~~~d~---L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF-~s----s 71 (251)
.++|++|.=...+ ..|.|.-.++. |++ .|.+...+.....||+.|- +.||+-- .+.+..+.+ .. .
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWi~~~~~~~~~pfivtPP---l~rl~p~-~~q~lRI~~~~~~~lP~ 77 (205)
T 1klf_A 3 ALGATRVIYPAGQKQVQLAVTNNDENSTYLIQ-SWVENADGVKDGRFIVTPP---LFAMKGK-KENTLRILDATNNQLPQ 77 (205)
T ss_dssp EESCSEEEEETTCSEEEEEEEECCSSCCEEEE-EEEEETTSCCCSSEEEESS---EEEECSS-EEEEEEEEECSCSCSCS
T ss_pred EecceEEEEeCCCcEEEEEEEcCCCCCcEEEE-EEEecCCCCccCCEEEcCC---eEEECCC-CceEEEEEecCCCCCCC
Confidence 5678888554444 34555544444 555 5998655555678999998 7788752 333333433 22 3
Q ss_pred CceeEEEe
Q psy11404 72 NRKLFFWL 79 (251)
Q Consensus 72 ~~k~FFWm 79 (251)
++-..||+
T Consensus 78 DrEslf~l 85 (205)
T 1klf_A 78 DRESLFWM 85 (205)
T ss_dssp SSCEEEEE
T ss_pred CceEEEEE
Confidence 57789997
No 7
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=41.22 E-value=33 Score=25.96 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=30.6
Q ss_pred ceEEEecCCCCCeEEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhc
Q psy11404 50 CEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLN 99 (251)
Q Consensus 50 ~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~ 99 (251)
|.....+...+.|=++++....+.+.|+ +|-.+.+.=.+.+..|+..|.
T Consensus 75 a~v~~~~~d~~krk~vF~l~t~~~~~yl-fqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 75 ATLSWAPKDKSSRKNVLELRSRDGSEYL-IQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CEEEECCGGGCSSSSEEEEECTTSCEEE-EECSCHHHHHHHHHHHHHHHC
T ss_pred CEEEecccccCCCceEEEEECCCCCEEE-EECCCHHHHHHHHHHHHHHHh
Confidence 6655553123345455555444444433 888887777789999999885
No 8
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=37.78 E-value=1.9e+02 Score=24.53 Aligned_cols=74 Identities=8% Similarity=0.146 Sum_probs=43.4
Q ss_pred cccCcEEeecCC--ceEEEEEecCC-CceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEec----CCce
Q psy11404 2 TMKGKMVHPDKR--KGLVYVHQSDD-SLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKS----SNRK 74 (251)
Q Consensus 2 ~l~g~~V~Pd~r--KG~l~i~~~~d-~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~s----s~~k 74 (251)
.+.+++|.=... -..|.|.-.++ -.+-=.|.+...+.....||+.|- +.||+-- .+.+..+.+.. .++-
T Consensus 15 ~i~~TRvIy~~~~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPP---l~rl~p~-~~q~lRI~~~~~~lP~DrE 90 (221)
T 2co7_B 15 KLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPP---LFRLEAN-QQSQLRIVRTGGDMPTDRE 90 (221)
T ss_dssp EESCSEEEEETTSSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESS---EEEECTT-CEEEEEEEECCCCCCSSSC
T ss_pred EEcceEEEEcCCCCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCC---EEEECCC-CceEEEEEECCCCCCCCce
Confidence 467777754443 34455544333 233345988655555668999998 7788752 33344443433 3577
Q ss_pred eEEEe
Q psy11404 75 LFFWL 79 (251)
Q Consensus 75 ~FFWm 79 (251)
..||+
T Consensus 91 slf~l 95 (221)
T 2co7_B 91 TLQWV 95 (221)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 89997
No 9
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=37.44 E-value=1.9e+02 Score=24.46 Aligned_cols=73 Identities=11% Similarity=0.288 Sum_probs=43.4
Q ss_pred cccCcEEeecCCce--EEEEEecCCC---ceeEEEeeCCCCC-c-cccEEecCCCceEEEecCCCCCeEEEEEEec----
Q psy11404 2 TMKGKMVHPDKRKG--LVYVHQSDDS---LMHFCWKDRQSGS-V-VEDLIIFPDDCEFKKVPQCTTGRVYVLKFKS---- 70 (251)
Q Consensus 2 ~l~g~~V~Pd~rKG--~l~i~~~~d~---L~hf~W~~R~tg~-v-EddlIifPgd~~F~kV~~c~tGRVyvLkF~s---- 70 (251)
.+++++|.=...+. .|.|.-.++. |++ .|.+...+. . ...||+.|- +.||+-- .+.+..+.+..
T Consensus 3 ~l~~TRvIy~~~~k~~sl~l~N~~~~~p~LvQ-sWi~~~~~~~~~~~pfivtPP---l~rl~p~-~~q~lRI~~~~~~~~ 77 (218)
T 2xg5_A 3 SLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQ-AWIENENQEKIITGPVIATPP---VQRLEPG-AKSMVRLSTTPDISK 77 (218)
T ss_dssp EESCSEEEEETTSSEEEEEEEECCSSSCEEEE-EEEECTTSCEECSSSEEEECS---EEEECTT-CEEEEEEEECGGGGG
T ss_pred EeCceEEEEeCCCCEEEEEEEcCCCCCcEEEE-EEEecCCCCccccCCEEEcCC---eEEECCC-CceEEEEEecCCCCC
Confidence 56788875444443 4555444444 444 599865433 3 457999998 7788752 33444444433
Q ss_pred --CCceeEEEe
Q psy11404 71 --SNRKLFFWL 79 (251)
Q Consensus 71 --s~~k~FFWm 79 (251)
.++-..||+
T Consensus 78 lP~DrESlf~l 88 (218)
T 2xg5_A 78 LPQDRESLFYF 88 (218)
T ss_dssp SCSSSCEEEEE
T ss_pred CCCCceEEEEE
Confidence 457789997
No 10
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=34.23 E-value=32 Score=30.66 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred hHHHHhcccCHHHHHHHhcccccCCCChhh
Q psy11404 118 DIQNLLSNMSQQQLMQFFGGQINQMGGLSS 147 (251)
Q Consensus 118 ~lq~~L~~l~~~qL~ql~~~~~~~~~~L~~ 147 (251)
.+.++|.+|+.+||.+|+..++...+.+..
T Consensus 54 PL~RlLEtLdk~qL~sLL~~L~~~HPel~q 83 (245)
T 3q5w_A 54 PLSRLLQYSDKQQLFTILLQCVEKHPDLAR 83 (245)
T ss_dssp CHHHHTTSSCHHHHHHHHHHHHHHCTHHHH
T ss_pred CHHHHHHhCCHHHHHHHHHHHHHhCchHHH
Confidence 589999999999999887654433344433
No 11
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.57 E-value=77 Score=22.51 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=30.5
Q ss_pred EEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhcC
Q psy11404 43 LIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNN 100 (251)
Q Consensus 43 lIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~~ 100 (251)
.|-+.+.+....++.. .++-+++.....++. |.|+-.+.+.=.+.+..|+.++..
T Consensus 50 ~i~L~~~~~v~~~~~~-~~~~~~F~i~~~~r~--~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 50 DILLDENCCVESLPDK-DGKKCLFLVKCFDKT--FEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp EECCCTTCEEEEECCC-TTCCSEEEEECSSCE--EEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcEEEEECCCC-CCCeeEEEEEeCCCE--EEEEcCCHHHHHHHHHHHHHHHHH
Confidence 4444444555556543 454333333344454 445666655556788888888754
No 12
>1z8r_A Coxsackievirus B4 polyprotein; beta barrel coordinated zinc ION, hydrolase; NMR {Human coxsackievirus B4}
Probab=30.53 E-value=24 Score=29.79 Aligned_cols=23 Identities=48% Similarity=0.682 Sum_probs=14.7
Q ss_pred CCCCCeEEEEEEecCCcee---------EEEecCCC
Q psy11404 57 QCTTGRVYVLKFKSSNRKL---------FFWLQEPK 83 (251)
Q Consensus 57 ~c~tGRVyvLkF~ss~~k~---------FFWmQe~~ 83 (251)
.|++| ||. -.+..|| ++|+|+.+
T Consensus 73 ~Ct~G-vYY---c~s~~k~yPV~~~~p~~~~iqese 104 (166)
T 1z8r_A 73 QCTTG-VYF---CASKSKHYPVSFEGPGLVEVQESE 104 (166)
T ss_dssp CCSEE-EEE---BTTTCSEEEEECBCCSEEEECSBT
T ss_pred cccCc-eEE---EeecCcCcceEEcCCCeEEecccC
Confidence 46777 663 2344444 59999976
No 13
>2hrv_A 2A cysteine proteinase; hydrolase (cysteine proteinase); 1.95A {Human rhinovirus 2} SCOP: b.47.1.4
Probab=30.50 E-value=23 Score=29.19 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=14.8
Q ss_pred CCCCCeEEEEEEecCCcee---------EEEecCCC
Q psy11404 57 QCTTGRVYVLKFKSSNRKL---------FFWLQEPK 83 (251)
Q Consensus 57 ~c~tGRVyvLkF~ss~~k~---------FFWmQe~~ 83 (251)
.|++| ||.=| +..|| ++|||+.+
T Consensus 53 ~Ct~g-vYyc~---~~~k~yPv~~~~p~~~~iq~se 84 (142)
T 2hrv_A 53 DCTQA-TYYCK---HKNRYFPITVTSHDWYEIQESE 84 (142)
T ss_dssp CCCEE-EEEEG---GGTEEEEEECEEEEEEEECCCS
T ss_pred cccCc-EEEEe---ecCcCcceEEcCCCeEEecccC
Confidence 46787 66433 34444 59999976
No 14
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=28.28 E-value=27 Score=32.43 Aligned_cols=53 Identities=11% Similarity=0.445 Sum_probs=36.0
Q ss_pred eecCCceEEEEEecCCCceeEEEeeCC-C---CC----ccccEEecCCCceEEEecCCCCCeEEEEE
Q psy11404 9 HPDKRKGLVYVHQSDDSLMHFCWKDRQ-S---GS----VVEDLIIFPDDCEFKKVPQCTTGRVYVLK 67 (251)
Q Consensus 9 ~Pd~rKG~l~i~~~~d~L~hf~W~~R~-t---g~----vEddlIifPgd~~F~kV~~c~tGRVyvLk 67 (251)
.-|.+.|.||+..-+.+=+ .||.... . ++ +.|+.++||++..+. ..|.+|++-
T Consensus 281 ~~D~~~G~ly~~~~~~~aI-~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~-----~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQV-SCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVD-----SKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEE-EEEETTSCSBCGGGEEEEEECTTCCSEEEEEEC-----TTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeE-EEEeCCCCccccCceEEEEECCCccccCeEEEC-----CCCeEEEEE
Confidence 3457889999987655544 8998765 1 11 236677888887643 468999886
No 15
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=23.09 E-value=3.2e+02 Score=23.51 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=42.3
Q ss_pred cccCcEEeecCCc--eEEEEEecCCC-ceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEEec----CCce
Q psy11404 2 TMKGKMVHPDKRK--GLVYVHQSDDS-LMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKFKS----SNRK 74 (251)
Q Consensus 2 ~l~g~~V~Pd~rK--G~l~i~~~~d~-L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF~s----s~~k 74 (251)
.+.|++|.=...+ ..|.|.-.++. .+-=.|.+...+.....||+.|- +.||+-- .+.+..+.+.. .++-
T Consensus 25 ~l~~TRvIy~~~~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPP---lfRlep~-~~q~lRIi~~~~~LP~DRE 100 (239)
T 4djm_A 25 HLGATRVVYNPASSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPP---LFRLDGQ-QSSRLRIVRTGGEFPPDRE 100 (239)
T ss_dssp EESCSEEEECTTSSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESS---EEEECTT-EEEEEEEEECSCCCCSSSC
T ss_pred EEcceEEEEeCCCCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCC---eEEECCC-CceEEEEEECCCCCCCCce
Confidence 4678887544433 44555444332 22234988654444567999997 7778652 22232222322 3678
Q ss_pred eEEEec
Q psy11404 75 LFFWLQ 80 (251)
Q Consensus 75 ~FFWmQ 80 (251)
..||+=
T Consensus 101 Slf~ln 106 (239)
T 4djm_A 101 SLQWIC 106 (239)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 899974
No 16
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.70 E-value=76 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCcc
Q psy11404 164 TEAVSMFSAALQSGQLG 180 (251)
Q Consensus 164 qQal~~fs~AL~sGql~ 180 (251)
.-++-.++.||+.|.++
T Consensus 19 eDaiy~L~~aL~~g~I~ 35 (65)
T 2f6m_A 19 TDTIEALSRMLHRGTIP 35 (65)
T ss_dssp HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 45777888999988775
No 17
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=20.69 E-value=3.3e+02 Score=21.89 Aligned_cols=60 Identities=15% Similarity=0.367 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCceeEEEeeCCCCCccccEEe--cCCCceEEEecCCCCCeEEEEEEecCCceeEE
Q psy11404 14 KGLVYVHQSDDSLMHFCWKDRQSGSVVEDLII--FPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFF 77 (251)
Q Consensus 14 KG~l~i~~~~d~L~hf~W~~R~tg~vEddlIi--fPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FF 77 (251)
.|-|+|....+ .+.+.-.+..||++=-.--+ .|+.+ .++|- -+.|-|+|+..+.+.||-|
T Consensus 44 tGrlrv~~~g~-~~~I~LeD~~tGeLFA~cPv~~~~~~~-VE~v~--DSSRYFVlRv~d~~gr~Af 105 (133)
T 1tqz_A 44 TGRLRITSKGK-IAYIKLEDKVSGELFAQAPVEQYPGIA-VETVT--DSSRYFVIRIQDGTGRSAF 105 (133)
T ss_dssp EEEEEEECCSS-SEEEEEECSSCCSSCEEEEECSSCCCC-EEECT--TCCSCEEEEEEETTTEEEE
T ss_pred EEEEEEEEeCC-EEEEEEEeCCCCcEEEeCcccCCCCcc-eEEee--cCcCeEEEEEECCCCcEEE
Confidence 46667755333 33355557777754211222 35433 34442 2459999999875445544
No 18
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.31 E-value=2.3e+02 Score=19.92 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=22.0
Q ss_pred EEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhcCC
Q psy11404 63 VYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNP 101 (251)
Q Consensus 63 VyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~~p 101 (251)
+|.|.. .+.+.| .++-.+.+.=.+.+..|+.++...
T Consensus 68 ~F~i~~--~~~r~~-~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 68 VFKITT--TKQQDH-FFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EEEEEE--TTTEEE-EEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEc--CCCCEE-EEECCCHHHHHHHHHHHHHHHhcc
Confidence 555543 333333 366666555568889998888753
No 19
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=20.12 E-value=79 Score=24.33 Aligned_cols=43 Identities=30% Similarity=0.591 Sum_probs=30.6
Q ss_pred EEEEec-CCCceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEE
Q psy11404 17 VYVHQS-DDSLMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKF 68 (251)
Q Consensus 17 l~i~~~-~d~L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF 68 (251)
|.|..+ +|+-+||+-.+.+ -||+||.|+|+.-.+- -.|+.+|.
T Consensus 9 L~i~~~~~DNSL~F~L~N~T-------N~ii~GNC~~~Fs~~~--~~~~~I~M 52 (107)
T 2kzk_A 9 LHVEVSNEDNSLHFILYNKT-------NIIIPGNCTFEFSSQI--SEVFSIKM 52 (107)
T ss_dssp CEEEECCBTTBCCEEEECCS-------SSCCCSSCEEEBCCSS--SCCBCCBC
T ss_pred eEEEEccCCCeEEEEEecCC-------ceEecCcceEEEecCC--CcEEEEec
Confidence 344433 5677888887776 3689999999988775 35777775
Done!