Query psy11404
Match_columns 251
No_of_seqs 153 out of 215
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 17:35:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v89a_ b.55.1.1 (A:) Rho-GTPa 57.6 16 0.0011 24.7 6.6 56 48-103 54-116 (118)
2 d3bwuc1 b.1.11.1 (C:1-121) Per 54.0 27 0.002 25.1 7.8 72 2-79 3-85 (121)
3 d1yt3a2 a.60.8.3 (A:295-375) R 51.3 6.1 0.00044 27.2 3.4 42 161-209 7-48 (81)
4 d2hrva_ b.47.1.4 (A:) 2A cyste 36.9 7.3 0.00053 30.1 2.0 23 57-83 53-84 (139)
5 d1v5ma_ b.55.1.1 (A:) SH2 and 36.6 21 0.0015 25.4 4.5 39 62-103 96-134 (136)
6 d1zsqa1 b.55.1.8 (A:74-198) My 36.2 52 0.0038 23.7 6.9 29 58-98 82-110 (125)
7 d1uema_ b.1.2.1 (A:) KIAA1568 33.2 29 0.0021 23.6 4.8 74 10-84 16-94 (117)
8 d2aj7a1 b.158.1.1 (A:1-148) Hy 29.4 22 0.0016 27.1 3.7 38 40-83 16-53 (148)
9 d2fjla1 b.55.1.1 (A:1-37,A:87- 27.9 73 0.0053 20.6 8.0 56 42-99 42-99 (101)
10 d2f6ma1 a.2.17.1 (A:322-385) V 26.8 27 0.002 23.3 3.3 18 163-180 17-34 (64)
11 d1olma2 b.132.1.1 (A:275-393) 25.5 68 0.0049 22.7 5.8 29 58-86 81-114 (119)
12 d1v88a_ b.55.1.1 (A:) Oxystero 24.6 88 0.0064 20.9 6.2 27 77-103 102-128 (130)
13 d2cuma1 b.1.2.1 (A:7-99) Tenas 23.7 84 0.0061 19.8 7.3 66 17-83 8-74 (93)
14 d1mmsa2 d.47.1.1 (A:8-70) Ribo 23.4 28 0.002 23.1 2.8 25 179-214 17-41 (63)
15 d2j59m1 b.55.1.1 (M:931-1063) 20.2 1E+02 0.0074 20.9 5.8 50 48-100 61-110 (133)
No 1
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.59 E-value=16 Score=24.66 Aligned_cols=56 Identities=13% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCceEEEe-cCCCCCeEEEEEEecCC--c----eeEEEecCCCCcchHHHHHHHHHHhcCCCC
Q psy11404 48 DDCEFKKV-PQCTTGRVYVLKFKSSN--R----KLFFWLQEPKTDKDDENARKVNEVLNNPPT 103 (251)
Q Consensus 48 gd~~F~kV-~~c~tGRVyvLkF~ss~--~----k~FFWmQe~~~~~D~~~~~~vn~~l~~p~~ 103 (251)
.++....| ..+..++.|+++..... . ..=|.||-.+.+.=.+.+..|+.+++..|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~p~ 116 (118)
T d1v89a_ 54 PGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp TTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred CceEEEEeccccccCCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHccCCC
Confidence 34555554 34445555554443221 1 122567877776667999999999987654
No 2
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}
Probab=54.05 E-value=27 Score=25.08 Aligned_cols=72 Identities=15% Similarity=0.379 Sum_probs=45.9
Q ss_pred cccCcEEe--ecCCceEEEEEec-CCC-ceeEEEeeCCCCCccccEEecCCCceEEEecCCCCCeEEEEEE--e-----c
Q psy11404 2 TMKGKMVH--PDKRKGLVYVHQS-DDS-LMHFCWKDRQSGSVVEDLIIFPDDCEFKKVPQCTTGRVYVLKF--K-----S 70 (251)
Q Consensus 2 ~l~g~~V~--Pd~rKG~l~i~~~-~d~-L~hf~W~~R~tg~vEddlIifPgd~~F~kV~~c~tGRVyvLkF--~-----s 70 (251)
.+++++|. .....+.+.|.-. ++. .+-..|.+...+....+||+.|- +.|++- |--+.|++ . .
T Consensus 3 ~l~~TRvI~~~~~~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPP---l~rl~p---~~~q~vRI~~~~~~~lp 76 (121)
T d3bwuc1 3 ALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPP---LFAMKG---KKENTLRILDATNNQLP 76 (121)
T ss_dssp EESCSEEEEETTCSEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESS---EEEEES---SEEEEEEEEECSTTCSC
T ss_pred eECceEEEEcCCCceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCC---cEEeCC---CCeeEEEEEecCCCCCC
Confidence 46777775 3445556666553 343 56678998777777778999996 666654 34444443 1 1
Q ss_pred CCceeEEEe
Q psy11404 71 SNRKLFFWL 79 (251)
Q Consensus 71 s~~k~FFWm 79 (251)
.++-..||+
T Consensus 77 ~drEslf~l 85 (121)
T d3bwuc1 77 QDRESLFWM 85 (121)
T ss_dssp SSSCEEEEE
T ss_pred CCeEEEEEE
Confidence 245678887
No 3
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=51.30 E-value=6.1 Score=27.19 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhcCCcchhhhhcCCChHHHhhcccCcHHHHHHHHH
Q psy11404 161 NCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATTQGNMEEFVRALQ 209 (251)
Q Consensus 161 ~qFqQal~~fs~AL~sGql~pll~QfGl~~~~~~aa~~G~ve~Fl~al~ 209 (251)
|.|++++..+..+++ .+..++|++++.+ |++.+++++++-.-
T Consensus 7 P~yK~~~K~lk~~v~-----~~Ae~~~IapelL--askkdle~ll~~~~ 48 (81)
T d1yt3a2 7 PGYRKAFKAIKSLIT-----DVSETHKISAELL--ASRRQINQLLNWHW 48 (81)
T ss_dssp TTHHHHHHHHHHHHH-----HHHHHHTCCHHHH--CCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHH-----HHHHHcCCCHHHh--cCHHHHHHHHHHHH
Confidence 478999999999988 3566799999987 68889999998554
No 4
>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2 [TaxId: 12130]}
Probab=36.93 E-value=7.3 Score=30.05 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=15.0
Q ss_pred CCCCCeEEEEEEecCCce---------eEEEecCCC
Q psy11404 57 QCTTGRVYVLKFKSSNRK---------LFFWLQEPK 83 (251)
Q Consensus 57 ~c~tGRVyvLkF~ss~~k---------~FFWmQe~~ 83 (251)
+|++| ||.=| |..| -|+|||+..
T Consensus 53 ~CttG-vYYc~---s~~k~YPV~~~~p~~~~iq~se 84 (139)
T d2hrva_ 53 DCTQA-TYYCK---HKNRYFPITVTSHDWYEIQESE 84 (139)
T ss_dssp CCCEE-EEEEG---GGTEEEEEECEEEEEEEECCCS
T ss_pred cCCCC-eEEee---eCCcCcceEEcCCCEEEeCCcc
Confidence 46777 77543 3334 469999976
No 5
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.58 E-value=21 Score=25.38 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=26.4
Q ss_pred eEEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhcCCCC
Q psy11404 62 RVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNNPPT 103 (251)
Q Consensus 62 RVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~~p~~ 103 (251)
.+|.|. ..+.+.|+ +|-.+.+.=.+++..|+.+|+.+|.
T Consensus 96 ~~F~l~--t~~~~~y~-f~A~s~~e~~~Wv~ai~~ai~~~~~ 134 (136)
T d1v5ma_ 96 NTFVLK--VENGAEYI-LETIDSLQKHSWVADIQGCVDSGPS 134 (136)
T ss_dssp TEECCB--CTTSCBEE-EECSSHHHHHHHHHHHHHHHHHSCS
T ss_pred cEEEEE--cCCCcEEE-EECCCHHHHHHHHHHHHHHHhcCCC
Confidence 345444 44444444 7777776667999999999987653
No 6
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.22 E-value=52 Score=23.73 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=19.0
Q ss_pred CCCCeEEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHh
Q psy11404 58 CTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVL 98 (251)
Q Consensus 58 c~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l 98 (251)
||+.||+.+.|.. +.... .+++++++++.
T Consensus 82 CKDfr~~~f~f~~----------e~~~~--~~v~~~L~~~a 110 (125)
T d1zsqa1 82 CKDIRNLRFAHKP----------EGRTR--RSIFENLMKYA 110 (125)
T ss_dssp ETTTEEEEEECCG----------GGCCH--HHHHHHHHHHS
T ss_pred eccCeEEEEEEcC----------CccHH--HHHHHHHHHhC
Confidence 8899999888853 22222 35777777763
No 7
>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.21 E-value=29 Score=23.55 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=42.5
Q ss_pred ecCCceEEEEEecCCCceeEEEeeCCCCCcc-ccEEe----cCCCceEEEecCCCCCeEEEEEEecCCceeEEEecCCCC
Q psy11404 10 PDKRKGLVYVHQSDDSLMHFCWKDRQSGSVV-EDLII----FPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKT 84 (251)
Q Consensus 10 Pd~rKG~l~i~~~~d~L~hf~W~~R~tg~vE-ddlIi----fPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~~ 84 (251)
|.+-.. +.+..-...-+.+.|.+-..+... ..++| ..++-.|..|........|.++-...+..|.|++.-.+.
T Consensus 16 P~pP~~-~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~ 94 (117)
T d1uema_ 16 PGPPSK-PQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINP 94 (117)
T ss_dssp CBCCCC-CEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEEEET
T ss_pred CcCCCC-CEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEEEEEEEeC
Confidence 544433 344433455688999865433222 22333 233445666554334467887766778899999986543
No 8
>d2aj7a1 b.158.1.1 (A:1-148) Hypothetical protein BH3618 {Bacillus halodurans [TaxId: 86665]}
Probab=29.35 E-value=22 Score=27.06 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=21.4
Q ss_pred cccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEecCCC
Q psy11404 40 VEDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPK 83 (251)
Q Consensus 40 EddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~ 83 (251)
|+++|.||.. ++....=|=|+|--. ....-|||||.-.
T Consensus 16 e~~ii~Fp~G-----i~GFe~~~~F~L~~~-~~~~pf~~LqS~d 53 (148)
T d2aj7a1 16 EDRLIAFDQG-----IPAFEDEKEFVLLPF-AAGTPYYTLQSTK 53 (148)
T ss_dssp GGGEEECTTC-----BTTBTTCCEEEEEES-STTSCEEEEEESS
T ss_pred hhcEEEcCCC-----CCCCCcccEEEEEEC-CCCCcEEEEEEcC
Confidence 4678888842 332222244555432 2344699999754
No 9
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.90 E-value=73 Score=20.58 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=35.9
Q ss_pred cEEecCCCceEEEecCCCCCeE--EEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhc
Q psy11404 42 DLIIFPDDCEFKKVPQCTTGRV--YVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLN 99 (251)
Q Consensus 42 dlIifPgd~~F~kV~~c~tGRV--yvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~ 99 (251)
..|.+. .+....++....++- |.|.+...+. .-|-+|-.+.+.=.+.+..|++++.
T Consensus 42 ~~i~l~-~~~v~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~a~s~~e~~~Wi~ai~~~~~ 99 (101)
T d2fjla1 42 GVLDVP-ACQIAIRPEGKNNRLFVFSISMPSVAQ-WSLDVAADSQEELQDWVKKIREVAQ 99 (101)
T ss_dssp EEECST-TCEEEEETTCSSSCSCEEEEECTTTSS-CCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ceEEcC-CceeEeeeeecccccceeEEecccccc-EEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 355554 577777777777764 5554433232 3366777777666788888888765
No 10
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.85 E-value=27 Score=23.32 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCcc
Q psy11404 163 TTEAVSMFSAALQSGQLG 180 (251)
Q Consensus 163 FqQal~~fs~AL~sGql~ 180 (251)
-..++..++.||+.|.++
T Consensus 17 ieDaiy~L~~aL~~G~I~ 34 (64)
T d2f6ma1 17 LTDTIEALSRMLHRGTIP 34 (64)
T ss_dssp HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 356788999999999875
No 11
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.54 E-value=68 Score=22.74 Aligned_cols=29 Identities=31% Similarity=0.605 Sum_probs=21.2
Q ss_pred CCCCeEEEEEEec-----CCceeEEEecCCCCcc
Q psy11404 58 CTTGRVYVLKFKS-----SNRKLFFWLQEPKTDK 86 (251)
Q Consensus 58 c~tGRVyvLkF~s-----s~~k~FFWmQe~~~~~ 86 (251)
|..--.|+|+|.+ .+++.+|+++-...++
T Consensus 81 ~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v~~P~~ 114 (119)
T d1olma2 81 CSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDK 114 (119)
T ss_dssp CCSCEEEEEEEECTTCCCCSEEEEEEEEEECCCH
T ss_pred cCCCEEEEEEEeCCcceEEeeEEEEEEEEECCcc
Confidence 5555699999976 3578999998655443
No 12
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.59 E-value=88 Score=20.90 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=19.6
Q ss_pred EEecCCCCcchHHHHHHHHHHhcCCCC
Q psy11404 77 FWLQEPKTDKDDENARKVNEVLNNPPT 103 (251)
Q Consensus 77 FWmQe~~~~~D~~~~~~vn~~l~~p~~ 103 (251)
|.||-++.+.=.+.+..|+.+|...|+
T Consensus 102 ~~l~A~s~~e~~~Wi~al~~~i~~~p~ 128 (130)
T d1v88a_ 102 LIIRATSESDGRCWMDALELALKSGPS 128 (130)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhhcCCC
Confidence 456666655556899999999987654
No 13
>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.67 E-value=84 Score=19.84 Aligned_cols=66 Identities=8% Similarity=-0.122 Sum_probs=35.8
Q ss_pred EEEEecCCCceeEEEeeCCCCCcc-ccEEecCCCceEEEecCCCCCeEEEEEEecCCceeEEEecCCC
Q psy11404 17 VYVHQSDDSLMHFCWKDRQSGSVV-EDLIIFPDDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPK 83 (251)
Q Consensus 17 l~i~~~~d~L~hf~W~~R~tg~vE-ddlIifPgd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~ 83 (251)
|.+..-...-+++.|++-. +.+. -.+..-+.+.....+.--.+-+-|.|.-...+..|-|+++--+
T Consensus 8 l~~~~~~~~sv~l~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~ 74 (93)
T d2cuma1 8 LEAKEVTPRTALLTWTEPP-VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMW 74 (93)
T ss_dssp EEEESCCSSCEEEEEECCS-SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEB
T ss_pred CEEEEeCCCEEEEEEEccc-cccccEEEEEEccccccEEEEECCCccEEEEeCccCCCEEEEEEEEEe
Confidence 4555545677889998643 2222 2232333333333332212235566665667888888887543
No 14
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.35 E-value=28 Score=23.14 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.8
Q ss_pred cchhhhhcCCChHHHhhcccCcHHHHHHHHHHhhcc
Q psy11404 179 LGPVVQQFDVSNEAVAATTQGNMEEFVRALQNASIS 214 (251)
Q Consensus 179 l~pll~QfGl~~~~~~aa~~G~ve~Fl~al~~~~~~ 214 (251)
+||.|.|+|+ +|-.|.++..+..+.
T Consensus 17 vGpaLG~~Gi-----------Ni~~F~k~fN~~Tk~ 41 (63)
T d1mmsa2 17 VGPALGQHGV-----------NIMEFCKRFNAETAD 41 (63)
T ss_dssp TTHHHHTTTC-----------CHHHHHHHHHHHTTT
T ss_pred CcchhhhcCc-----------CHHHHHHHHHHHhcc
Confidence 7888999999 689999999988765
No 15
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.20 E-value=1e+02 Score=20.93 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCceEEEecCCCCCeEEEEEEecCCceeEEEecCCCCcchHHHHHHHHHHhcC
Q psy11404 48 DDCEFKKVPQCTTGRVYVLKFKSSNRKLFFWLQEPKTDKDDENARKVNEVLNN 100 (251)
Q Consensus 48 gd~~F~kV~~c~tGRVyvLkF~ss~~k~FFWmQe~~~~~D~~~~~~vn~~l~~ 100 (251)
..+....++. .++|-|++....+++.++ ||-.+.+.=.+.+..|+..++.
T Consensus 61 ~~~~v~~~~~-~~~r~~~F~i~~~~~~~~--f~A~s~~e~~~Wi~ai~~a~~~ 110 (133)
T d2j59m1 61 NACLIDISYS-ETKRKNVFRLTTSDCECL--FQAEDRDDMLAWIKTIQESSNL 110 (133)
T ss_dssp SSCEEEECSS-SCSCSSEEEEECSSCEEE--EECSSHHHHHHHHHHHHHHCCC
T ss_pred cceEEEEccc-ccccCceeEEecCCCEEE--EEeCCHHHHHHHHHHHHHHHhc
Confidence 3455555444 356655555556666544 6877766666899999988764
Done!