RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11404
         (251 letters)



>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor
           AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 89

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 78  WLQEPKTDKDDENARKVNEVLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQL 131
           W++    +K DE  ++ N  + NP      R    GR E +I   LS +S++QL
Sbjct: 8   WIKADSLEKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIMQTLS-LSKKQL 60


>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B
           (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 25.4 bits (56), Expect = 1.7
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 179 LGPVVQQFDVSNEAVAATTQGNMEEFVRAL 208
           L  ++QQ    N  +      + E F++ L
Sbjct: 25  LPALLQQIGRENPQLLQQISQHQEHFIQML 54


>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
           42739]}
          Length = 319

 Score = 26.0 bits (56), Expect = 5.0
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 5/106 (4%)

Query: 97  VLNNPPTPGSQRSDSSGRVEGDIQNLLSNMSQQQLMQFFGGQINQMGGL-----SSLLGT 151
                P  GS+ +D    V       LS+      +  FG  ++          ++L   
Sbjct: 108 TTIGTPHRGSEFADFVQDVLKTDPTGLSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTL 167

Query: 152 MRSKVQRVNNCTTEAVSMFSAALQSGQLGPVVQQFDVSNEAVAATT 197
             ++    N     A      + Q+G     V        +   T 
Sbjct: 168 TTAQTATYNRNFPSAGLGAPGSCQTGAATETVGGSQHLLYSWGGTA 213


>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
          (Triticum vulgare) [TaxId: 4565]}
          Length = 409

 Score = 25.9 bits (56), Expect = 5.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 64 YVLKFKSSNRKLFFWLQEPKTDKDD 88
          Y+   + + R LF+ LQE   D   
Sbjct: 24 YITVDEGAGRSLFYLLQEAPEDAQP 48


>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha,
           APPL1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.2 bits (51), Expect = 8.5
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 193 VAATTQGNMEEFVRALQNAS 212
           + A ++ + EE++  + N S
Sbjct: 82  LQAESKKDHEEWICTINNIS 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 856,220
Number of extensions: 35745
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 8
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.3 bits)