BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11405
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis
GN=adrm1-a PE=2 SV=2
Length = 404
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 3/67 (4%)
Query: 3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
S GALF S V SR S SK LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 2 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61
Query: 60 DRQSGSV 66
DR SGSV
Sbjct: 62 DRTSGSV 68
>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis
GN=adrm1 PE=2 SV=1
Length = 404
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 3/67 (4%)
Query: 3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
S GALF S V SR S SK LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 2 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61
Query: 60 DRQSGSV 66
DR SGSV
Sbjct: 62 DRTSGSV 68
>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis
GN=adrm1-b PE=2 SV=1
Length = 404
Score = 95.5 bits (236), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/67 (71%), Positives = 54/67 (80%), Gaps = 3/67 (4%)
Query: 3 SGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
S GALF S V SR S SK LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFCWK
Sbjct: 2 SSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWK 61
Query: 60 DRQSGSV 66
DR SGSV
Sbjct: 62 DRTSGSV 68
>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1
PE=1 SV=2
Length = 407
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 55/69 (79%), Gaps = 3/69 (4%)
Query: 1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
M + GALF S V SR S +K LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1 MTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 58 WKDRQSGSV 66
WKDR SG+V
Sbjct: 61 WKDRTSGTV 69
>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2
SV=1
Length = 407
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 55/69 (79%), Gaps = 3/69 (4%)
Query: 1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
M + GALF S V SR S +K LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1 MTTSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 58 WKDRQSGSV 66
WKDR SG+V
Sbjct: 61 WKDRTSGNV 69
>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus
GN=Adrm1 PE=2 SV=2
Length = 407
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/69 (66%), Positives = 55/69 (79%), Gaps = 3/69 (4%)
Query: 1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
M + GALF S V SR S +K LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1 MTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 58 WKDRQSGSV 66
WKDR SG+V
Sbjct: 61 WKDRTSGTV 69
>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1
PE=1 SV=2
Length = 407
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Query: 1 MPSGGALFGSTVSRSQ---SKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
M + GALF S V S+ +K LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 58 WKDRQSGSV 66
WKDR SG+V
Sbjct: 61 WKDRTSGNV 69
>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1
PE=2 SV=1
Length = 406
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 55/69 (79%), Gaps = 3/69 (4%)
Query: 1 MPSGGALFGSTV--SR-SQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFC 57
M + GALF S V SR S SK LVEF+AGKM++KG V PDKRKGLVY+ Q+DDSL+HFC
Sbjct: 1 MTTSGALFPSLVPGSRGSSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 58 WKDRQSGSV 66
WKDR SG+V
Sbjct: 61 WKDRTSGNV 69
>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b
PE=1 SV=1
Length = 410
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 3 SGGALF---GSTVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWK 59
S GALF S S SK LVEF+AGKMT+KG V PDKRKG VY+ Q+DDSL+HFCWK
Sbjct: 2 SSGALFPSLVSGSRSSSSKYLVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWK 61
Query: 60 DRQSGSV 66
DR SG+V
Sbjct: 62 DRTSGNV 68
>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila
melanogaster GN=CG13349 PE=1 SV=1
Length = 389
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 39/46 (84%)
Query: 21 VEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSV 66
VEF+AG+M M GKMVHPD RKGLVY+ QSDD LMHFCWKDR SG V
Sbjct: 18 VEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKV 63
>sp|Q09289|ADRM1_CAEEL Proteasomal ubiquitin receptor ADRM1 homolog OS=Caenorhabditis
elegans GN=C56G2.7 PE=3 SV=2
Length = 374
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 7/71 (9%)
Query: 5 GALFGSTVS-RSQSKNLVEFKAGKMTMKG------KMVHPDKRKGLVYVHQSDDSLMHFC 57
A+F +T S S S ++VEFKAG+ ++ + V + +KGLV++ QS+D L+HFC
Sbjct: 2 AAMFSNTRSVASSSGHIVEFKAGRSRLEAGSGDTMRKVVAEPKKGLVFIKQSNDMLIHFC 61
Query: 58 WKDRQSGSVVE 68
WKDR++G+VV+
Sbjct: 62 WKDRETGAVVD 72
>sp|Q9USM1|ADRM1_SCHPO Probable proteasomal ubiquitin receptor ADRM1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC16A11.16c PE=3 SV=1
Length = 388
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 6 ALFGSTVSRSQSKN---LVEFKAGKMTMK--GKMVHPDKRKGLVYVHQSDDSLMHFCWKD 60
++FG + + + LV KAGK+ K ++ D RKG++Y+ + D L+HF WK+
Sbjct: 3 SVFGRVRNETSERGKYGLVSVKAGKLQRKPGTNILQADHRKGVIYMQMASDELLHFYWKE 62
Query: 61 R 61
R
Sbjct: 63 R 63
>sp|Q556N5|ADRM1_DICDI Proteasomal ubiquitin receptor ADRM1 homolog OS=Dictyostelium
discoideum GN=adrm1-1 PE=1 SV=1
Length = 287
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 21 VEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGS 65
VEFKAGK + G V D RKG + + + L W+ R S +
Sbjct: 8 VEFKAGKAKLTGTTVTSDSRKGYLKFGVTPEGLTCVQWRPRDSSA 52
>sp|Q9Y7Y6|YOY4_SCHPO Uncharacterized protein C342.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC342.04 PE=3 SV=1
Length = 291
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 19 NLVEFKAGKMTM--KGKMVHPDKRKGLVYVHQSDDSLMHFCWKDR 61
+L+ FKAGK+ K++ D KG + +++ L+HF W R
Sbjct: 2 SLITFKAGKLRRVPGTKLLRADPEKGYIVMNRDAYGLIHFQWAKR 46
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2
SV=2
Length = 408
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 MTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWSTLW 76
+ + G +H KRKG YV DS H+ W+ G V + S +W
Sbjct: 174 IIIHGVNIHDCKRKGNAYVR---DSPSHYGWRTASDGDAVSIFGGSHVW 219
>sp|P22098|TRPC_VIBPA Tryptophan biosynthesis protein TrpCF OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=trpC PE=3 SV=2
Length = 481
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 4 GGALFGSTVSRSQSKNLVEFKAGKMTMKG 32
GA+FG + +SK V+F++ ++TM G
Sbjct: 301 AGAVFGGLIFVEKSKRAVDFESARLTMSG 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,333,277
Number of Sequences: 539616
Number of extensions: 850205
Number of successful extensions: 1794
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1779
Number of HSP's gapped (non-prelim): 16
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)