Query psy11405
Match_columns 76
No_of_seqs 102 out of 168
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:36:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r2y_A Protein ADRM1; proteaso 100.0 6.1E-30 2.1E-34 176.9 8.7 71 2-72 5-78 (153)
2 2kr0_A Proteasomal ubiquitin r 100.0 2.5E-28 8.4E-33 188.7 9.8 73 1-73 5-80 (411)
3 4b4t_X 26S proteasome regulato 99.9 1.3E-22 4.4E-27 140.3 5.4 52 16-67 3-59 (156)
4 4go6_A HCF N-terminal chain 1; 51.9 28 0.00097 19.2 4.0 25 39-63 8-32 (45)
5 2ns0_A Hypothetical protein; r 45.3 7.4 0.00025 24.1 1.0 26 24-49 55-82 (85)
6 2fe0_A SMP-1, small myristoyla 43.5 23 0.00078 23.4 3.3 33 16-48 12-46 (136)
7 3pu7_A Superoxide dismutase [C 32.0 86 0.0029 20.5 4.7 30 25-58 4-33 (154)
8 3bdr_A YCF58 protein; X-RAY, N 30.5 1.3E+02 0.0045 20.6 5.9 46 26-74 102-147 (190)
9 3h7h_B Transcription elongatio 29.0 32 0.0011 21.4 2.1 15 34-48 44-58 (106)
10 1xzw_A Purple acid phosphatase 27.5 1.3E+02 0.0044 21.6 5.4 37 38-74 383-421 (426)
11 1pfj_A TFIIH basal transcripti 25.9 56 0.0019 20.8 2.8 17 42-63 22-38 (108)
12 1wft_A 1700129L13RIK protein; 24.4 1.4E+02 0.0046 19.6 4.5 29 43-72 13-43 (123)
13 1iar_B Protein (interleukin-4 21.7 90 0.0031 20.0 3.3 45 17-62 72-122 (207)
14 1r75_A Hypothetical protein; s 21.0 63 0.0021 21.5 2.4 26 21-47 20-45 (141)
15 2o8m_C Protease; NS3, NS4A, vi 20.1 42 0.0014 16.5 1.1 16 25-40 8-24 (26)
No 1
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=99.96 E-value=6.1e-30 Score=176.85 Aligned_cols=71 Identities=59% Similarity=0.994 Sum_probs=52.7
Q ss_pred Ccccccccc---cccCCCcceeEEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCeeeeEEE
Q psy11405 2 PSGGALFGS---TVSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWW 72 (76)
Q Consensus 2 ~~~~~lF~~---~~~~~~~~~lieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~vED~~~~ 72 (76)
|++|+||++ +..++++++||+||||||.++|++|+||+|||+|||++++|+|+||||++|+++.+|||+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lveFkAGkm~l~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~vEdDlIi 78 (153)
T 2r2y_A 5 TTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLII 78 (153)
T ss_dssp --------------------CCEEEEEEEEEEETTEEEECCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEEC
T ss_pred ccccceeccccCCccccCCceeEEEeCceEEecCCEEeECCCCEEEEEEECCCCcEEEEEecCCCCCccceEEE
Confidence 589999998 24567889999999999999999999999999999999999999999999999999999885
No 2
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=188.74 Aligned_cols=73 Identities=58% Similarity=0.962 Sum_probs=67.7
Q ss_pred CCccccccccc---ccCCCcceeEEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCeeeeEEEe
Q psy11405 1 MPSGGALFGST---VSRSQSKNLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWS 73 (76)
Q Consensus 1 ~~~~~~lF~~~---~~~~~~~~lieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~vED~~~~~ 73 (76)
+||+|+||+|. .+++++++||+||||||.++|++|+||+|||+|||++++|+|+||||++|+++.+|||+|..
T Consensus 5 ~~~~~~~F~~~~~~~~~s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~~Eddlii~ 80 (411)
T 2kr0_A 5 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIF 80 (411)
T ss_dssp CCSCSCCCTTSCCCCCSSCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCCEEEEEEEC
T ss_pred cccccccccCCCCCcccCCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCCcccceEEc
Confidence 47899999983 45788899999999999999999999999999999999999999999999999999999863
No 3
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=99.86 E-value=1.3e-22 Score=140.25 Aligned_cols=52 Identities=15% Similarity=0.394 Sum_probs=43.7
Q ss_pred CcceeEEEeceeeEEcC--CEEEecCCccEEEEEeCCC---CeEEEEEeeCCCCCee
Q psy11405 16 QSKNLVEFKAGKMTMKG--KMVHPDKRKGLVYVHQSDD---SLMHFCWKDRQSGSVV 67 (76)
Q Consensus 16 ~~~~lieFkAGK~~~~g--~~V~Pd~rKG~i~l~~~~D---~l~hf~W~~R~t~~vE 67 (76)
++.+||+||||||.+++ ++|+||+|||+|||++++| ||+||||++|+++..+
T Consensus 3 ~s~~li~FkAGk~~~~~~tk~v~Pd~rKG~i~l~~~~d~~~~l~hf~W~~R~~~~~~ 59 (156)
T 4b4t_X 3 MSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGR 59 (156)
T ss_dssp ----CEEECEEEEEEETTTTEEEECSCCCBEEEESCSSSSSCCCEEECBSCSCCSSC
T ss_pred CCceeEEEeCceEEEcCCccEEeecCCceEEEEEECCCCCcceEEEEEecCCCCCcC
Confidence 56789999999999986 6899999999999999877 6999999999987554
No 4
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=51.95 E-value=28 Score=19.18 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCccEEEEEeCCCCeEEEEEeeCCC
Q psy11405 39 KRKGLVYVHQSDDSLMHFCWKDRQS 63 (76)
Q Consensus 39 ~rKG~i~l~~~~D~l~hf~W~~R~t 63 (76)
+-.+.+.|.++...-+++||.+-.+
T Consensus 8 ~~PsrVQLvRAst~sLEv~W~~vpt 32 (45)
T 4go6_A 8 PPPARVQLVRANTNSLEVSWGAVAT 32 (45)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCTT
T ss_pred CCcceEEEEEeccceEEEEcCCCcc
Confidence 4568899999988999999987655
No 5
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=45.28 E-value=7.4 Score=24.06 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=20.7
Q ss_pred eceeeEE--cCCEEEecCCccEEEEEeC
Q psy11405 24 KAGKMTM--KGKMVHPDKRKGLVYVHQS 49 (76)
Q Consensus 24 kAGK~~~--~g~~V~Pd~rKG~i~l~~~ 49 (76)
++|++.+ .|+-|.|+.-||.++|-..
T Consensus 55 ~~G~v~I~qkG~pVdp~~~rGpiRir~~ 82 (85)
T 2ns0_A 55 DAGEVEVTQKGAVVDPRSARGPIRIRWT 82 (85)
T ss_dssp HTTSEEEEETTEECCTTTCCSCCEEEEC
T ss_pred HCCcEEEEECCEEcCcccCCCCEEeecC
Confidence 4676664 5888999999999999764
No 6
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=43.48 E-value=23 Score=23.35 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.8
Q ss_pred CcceeEEEeceeeEEcCCEEEecCCc--cEEEEEe
Q psy11405 16 QSKNLVEFKAGKMTMKGKMVHPDKRK--GLVYVHQ 48 (76)
Q Consensus 16 ~~~~lieFkAGK~~~~g~~V~Pd~rK--G~i~l~~ 48 (76)
...+-++|+-|...+.|..|+|.-.. |+||=..
T Consensus 12 ~~~~~~~f~~g~P~v~Gd~v~~cF~~~nGlLfRIv 46 (136)
T 2fe0_A 12 SENSSVTYVNGRPTFVGEEVTKGFEKDNGLLFRIV 46 (136)
T ss_dssp CCSSSCCCSSCCCSCCCSEEEESSSSTTCSEEEEE
T ss_pred CCCCccceECCCCCccccEEEEcccCCCcEEEEEE
Confidence 33355689999999999888887776 8885443
No 7
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A
Probab=32.02 E-value=86 Score=20.52 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=20.7
Q ss_pred ceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEE
Q psy11405 25 AGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCW 58 (76)
Q Consensus 25 AGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W 58 (76)
+..|.++|. .+.+|++++.+..++.+.|..
T Consensus 4 ~Avavl~g~----~~V~G~v~f~q~~~g~v~v~~ 33 (154)
T 3pu7_A 4 KAVAVLKGN----SNVEGVVTLSQDDDGPTTVNV 33 (154)
T ss_dssp EEEEEEBCS----SSCEEEEEEEEETTSCEEEEE
T ss_pred eEEEEECCC----CCCEEEEEEEEeCCCcEEEEE
Confidence 446667665 467899999987677555554
No 8
>3bdr_A YCF58 protein; X-RAY, NESG, Q8DI91, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Synechococcus elongatus}
Probab=30.49 E-value=1.3e+02 Score=20.59 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=22.1
Q ss_pred eeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCeeeeEEEee
Q psy11405 26 GKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSVVEVVWWST 74 (76)
Q Consensus 26 GK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~vED~~~~~~ 74 (76)
|++.++..-....|..|.-++ ++|+.+.+ -...++...|+.|+|++
T Consensus 102 G~LLRd~Gyae~~pv~g~y~~--~~d~~L~L-~TeY~~~~~eERiWF~~ 147 (190)
T 3bdr_A 102 GKLLREMGYAEKAPVAGRFSM--GSDGALTL-ITEYETIYSEERLWFAS 147 (190)
T ss_dssp EEEEEC----------CEEEE--CTTSCEEE-EEECSSCEEEEEEEEEE
T ss_pred ceEEEecCccccCcEeEEEEE--CCCCeEEE-EEeeCCEEEEEEEEecC
Confidence 566555444444555555444 34554433 34556778899999986
No 9
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.98 E-value=32 Score=21.39 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.1
Q ss_pred EEEecCCccEEEEEe
Q psy11405 34 MVHPDKRKGLVYVHQ 48 (76)
Q Consensus 34 ~V~Pd~rKG~i~l~~ 48 (76)
.+.|+.-||+||+.-
T Consensus 44 i~~~~~lkGyIyVEA 58 (106)
T 3h7h_B 44 VVAPEHVKGYIYVEA 58 (106)
T ss_dssp EEECTTCCSEEEEEE
T ss_pred EEecCCCceEEEEEe
Confidence 478999999999975
No 10
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=27.49 E-value=1.3e+02 Score=21.57 Aligned_cols=37 Identities=19% Similarity=0.464 Sum_probs=27.3
Q ss_pred cCCccEEEEEeCCCCeEEEEEeeCCCCC--eeeeEEEee
Q psy11405 38 DKRKGLVYVHQSDDSLMHFCWKDRQSGS--VVEVVWWST 74 (76)
Q Consensus 38 d~rKG~i~l~~~~D~l~hf~W~~R~t~~--vED~~~~~~ 74 (76)
+..-|...|.-..+..++|.|..-+++. +.|+|....
T Consensus 383 ~~~~G~~~l~v~n~t~~~~~~~~~~dg~~~~~D~~~i~~ 421 (426)
T 1xzw_A 383 EASFGHGIFDIKNRTHAHFSWHRNQDGASVEADSLWLLN 421 (426)
T ss_dssp ECCCEEEEEEECSSSEEEEEEEETTSCTTCCSEEEEEEC
T ss_pred ecCCCeEEEEEEcCCeEEEEEEECCCCCEEEeEEEEEEe
Confidence 4467888887656788899998655665 788887653
No 11
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=25.85 E-value=56 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.642 Sum_probs=13.8
Q ss_pred cEEEEEeCCCCeEEEEEeeCCC
Q psy11405 42 GLVYVHQSDDSLMHFCWKDRQS 63 (76)
Q Consensus 42 G~i~l~~~~D~l~hf~W~~R~t 63 (76)
|.|+|.. | |+.|.+...
T Consensus 22 GtL~l~~--d---~i~W~p~~~ 38 (108)
T 1pfj_A 22 GALYLMA--E---RIAWAPEGK 38 (108)
T ss_dssp CEEEEET--T---EEEEECSSS
T ss_pred ceEEEEc--c---eEEEccCCC
Confidence 9999975 4 999999554
No 12
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=24.41 E-value=1.4e+02 Score=19.58 Aligned_cols=29 Identities=24% Similarity=0.562 Sum_probs=20.2
Q ss_pred EEEEEeCCCCeEEEEEeeCC--CCCeeeeEEE
Q psy11405 43 LVYVHQSDDSLMHFCWKDRQ--SGSVVEVVWW 72 (76)
Q Consensus 43 ~i~l~~~~D~l~hf~W~~R~--t~~vED~~~~ 72 (76)
-|.|.++.|| .|+-|-+-. +++|++=.+|
T Consensus 13 ~ikIsK~~dg-ahLsWePP~~~sG~I~EYSVY 43 (123)
T 1wft_A 13 TVRISKNVDG-IHLSWEPPTSPSGNILEYSAY 43 (123)
T ss_dssp EEEEEECSSE-EEEEEECCSSCCSSCCCEEEE
T ss_pred ceEEeeCCCc-eEEeecCCCCCCcccEEEEEE
Confidence 5788887666 899997764 4577554444
No 13
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B*
Probab=21.72 E-value=90 Score=20.04 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=26.6
Q ss_pred cceeEEEeceeeEEc------CCEEEecCCccEEEEEeCCCCeEEEEEeeCC
Q psy11405 17 SKNLVEFKAGKMTMK------GKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62 (76)
Q Consensus 17 ~~~lieFkAGK~~~~------g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~ 62 (76)
....|.+.||+-... -..|+|||-.++ .+....++-+.+.|.+-.
T Consensus 72 ~~~~i~v~~~~~~~~~~~f~~~~iVkp~PP~nl-~~~~~~~~~l~l~W~~p~ 122 (207)
T 1iar_B 72 DNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNL-TVHTNVSDTLLLTWSNPY 122 (207)
T ss_dssp CCEEEEEEETTEEEEEEEECGGGSBCCCCCEEE-EEC----CCEEEEEECSS
T ss_pred eEEEEEEEeCCcccccccEeeccccccCCCCCe-EEEEccCCCEEEEECCCC
Confidence 335667788753322 245899998875 444334567788997653
No 14
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 1.86A {Leishmania major} SCOP: b.134.1.1
Probab=20.98 E-value=63 Score=21.47 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=19.6
Q ss_pred EEEeceeeEEcCCEEEecCCccEEEEE
Q psy11405 21 VEFKAGKMTMKGKMVHPDKRKGLVYVH 47 (76)
Q Consensus 21 ieFkAGK~~~~g~~V~Pd~rKG~i~l~ 47 (76)
++|+-|+..+.|..|+|.- .|+||=.
T Consensus 20 ~~f~~g~Psv~Gd~V~~cF-nGLLfRI 45 (141)
T 1r75_A 20 VTFKNGKPTVKGTKTYPMF-SNILYRI 45 (141)
T ss_dssp CCCSSCCCSCCCSEEEECS-TTSEEEE
T ss_pred ceeECCCCccccCEEEecC-CcEEEEE
Confidence 5688888888888888877 7777433
No 15
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=20.09 E-value=42 Score=16.50 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=11.9
Q ss_pred ceeeEEcCCE-EEecCC
Q psy11405 25 AGKMTMKGKM-VHPDKR 40 (76)
Q Consensus 25 AGK~~~~g~~-V~Pd~r 40 (76)
.||..+.|+- |.||.+
T Consensus 8 vGri~l~gkp~v~Pdre 24 (26)
T 2o8m_C 8 VGRIVLSGKPAIIPKKX 24 (26)
T ss_dssp EEEEECSCCCEECCCC-
T ss_pred EEEEEECCceEEcCCcC
Confidence 5899999886 678764
Done!