Query psy11405
Match_columns 76
No_of_seqs 102 out of 168
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 17:36:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11405.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11405hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfca2 b.42.5.1 (A:1141-1259) 65.8 6 0.00044 24.3 4.9 44 13-56 66-116 (119)
2 d2d7na1 b.1.18.10 (A:8-87) Fil 52.4 2.7 0.00019 23.3 1.3 46 21-66 8-53 (80)
3 d1fltx_ b.1.1.4 (X:) Second do 48.6 4.8 0.00035 23.1 2.1 29 17-45 35-63 (95)
4 d1kbla2 c.8.1.1 (A:377-509) Py 35.4 25 0.0018 21.1 4.0 22 25-46 110-131 (133)
5 d2ddza1 d.104.1.4 (A:3-190) Un 34.6 2.6 0.00019 27.9 -0.9 42 18-62 33-75 (188)
6 d2ns0a1 a.4.5.76 (A:1-85) Hypo 34.4 8.8 0.00064 22.2 1.6 25 25-49 56-82 (85)
7 d1erna2 b.1.2.1 (A:117-221) Er 34.1 25 0.0018 18.5 3.6 28 34-61 2-29 (105)
8 d2b5ic1 b.1.2.1 (C:130-224) Cy 30.7 36 0.0026 17.9 4.4 29 35-64 1-29 (95)
9 d1hlca_ b.29.1.3 (A:) S-lac le 30.4 24 0.0017 20.7 3.3 42 20-62 6-47 (129)
10 d1c1la_ b.29.1.3 (A:) Congerin 27.3 12 0.00088 22.2 1.4 36 22-57 9-45 (135)
11 d1is3a_ b.29.1.3 (A:) Congerin 27.0 26 0.0019 20.6 3.0 42 19-61 6-47 (134)
12 d1nvpc_ b.56.1.1 (C:) Large ch 25.7 30 0.0022 17.9 2.7 30 14-43 15-44 (47)
13 d2fe0a1 b.134.1.1 (A:1-131) Sm 20.9 36 0.0026 20.7 2.8 33 16-48 7-41 (131)
No 1
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.83 E-value=6 Score=24.33 Aligned_cols=44 Identities=20% Similarity=0.501 Sum_probs=33.4
Q ss_pred cCCCcceeEEEeceeeEEc---CCEEEecCCccEEEEEeC----CCCeEEE
Q psy11405 13 SRSQSKNLVEFKAGKMTMK---GKMVHPDKRKGLVYVHQS----DDSLMHF 56 (76)
Q Consensus 13 ~~~~~~~lieFkAGK~~~~---g~~V~Pd~rKG~i~l~~~----~D~l~hf 56 (76)
......-.+||++|+.-+. |+..+|.--+|++...++ .|.+.-+
T Consensus 66 ~~~~t~Ftle~~~G~vA~rD~~G~yL~p~G~~g~Lk~gk~~~~gkdElF~L 116 (119)
T d1dfca2 66 PEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFAL 116 (119)
T ss_dssp CCGGGCEEEEECSSEEEEEESSSCBEEECSSSCCEEECSCSSCCSTTCEEE
T ss_pred CCCCcEEEEEEeCCeEEEEcCCCCEEeccCCCceEEcCCCCCCCceeEEEe
Confidence 4445667899999998874 788999999999999653 2555443
No 2
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.41 E-value=2.7 Score=23.31 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=31.7
Q ss_pred EEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCCCCCe
Q psy11405 21 VEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQSGSV 66 (76)
Q Consensus 21 ieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~~v 66 (76)
|.+.+++=.+.-+...|+-+.=.+.+....||.+.+.|.+.+.|.-
T Consensus 8 i~~~~~~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h 53 (80)
T d2d7na1 8 IPFAVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLH 53 (80)
T ss_dssp ECCCCSSSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEE
T ss_pred EecCCCCCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEE
Confidence 3445555444445567777666677777788988899988887643
No 3
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.63 E-value=4.8 Score=23.13 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=22.7
Q ss_pred cceeEEEeceeeEEcCCEEEecCCccEEE
Q psy11405 17 SKNLVEFKAGKMTMKGKMVHPDKRKGLVY 45 (76)
Q Consensus 17 ~~~lieFkAGK~~~~g~~V~Pd~rKG~i~ 45 (76)
+..|.++..|...-+|..++.|+++|.+.
T Consensus 35 ~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I 63 (95)
T d1fltx_ 35 TVTLKKFPLDTLIPDGKRIIWDSRKGFII 63 (95)
T ss_dssp CCEEEETTTEEECCCSSSEEEETTTEEEE
T ss_pred eeEEEeccCCccCCCCCEEEECCCCCEEE
Confidence 44566777777767899999999999863
No 4
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}
Probab=35.36 E-value=25 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred ceeeEEcCCEEEecCCccEEEE
Q psy11405 25 AGKMTMKGKMVHPDKRKGLVYV 46 (76)
Q Consensus 25 AGK~~~~g~~V~Pd~rKG~i~l 46 (76)
|++...+|..|+=|..+|.||.
T Consensus 110 ~t~~l~~Gd~VTvDg~~G~Vy~ 131 (133)
T d1kbla2 110 GGHTFAEGDYISLDGSTGKIYK 131 (133)
T ss_dssp TTEEEETTCEEEEETTTCEEEE
T ss_pred CCEEEcCCCEEEEECCCeEEEe
Confidence 7888888999999999999985
No 5
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=34.57 E-value=2.6 Score=27.92 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=25.8
Q ss_pred ceeEEEeceeeEEc-CCEEEecCCccEEEEEeCCCCeEEEEEeeCC
Q psy11405 18 KNLVEFKAGKMTMK-GKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62 (76)
Q Consensus 18 ~~lieFkAGK~~~~-g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~ 62 (76)
..+|.|| |.|.+. .+++.-...+=.=+++. |..+||||---+
T Consensus 33 ~sIV~Fr-gp~~V~~e~miDlED~~~~~~I~S--~dminFivE~fd 75 (188)
T d2ddza1 33 DSLVVFR-GKCNVKVEEMVDIEDLRLRKEIKG--DDMVHYILELFW 75 (188)
T ss_dssp SEEEEEE-EEEECCGGGCCBHHHHHTTCCCEE--EEEEEEEEEECS
T ss_pred CcEEEEe-ccceechhhcccHHHhccCCcccc--hhhheeeeecCC
Confidence 4799999 567777 56654333221114543 678999995443
No 6
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=34.40 E-value=8.8 Score=22.19 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=20.0
Q ss_pred ceeeE--EcCCEEEecCCccEEEEEeC
Q psy11405 25 AGKMT--MKGKMVHPDKRKGLVYVHQS 49 (76)
Q Consensus 25 AGK~~--~~g~~V~Pd~rKG~i~l~~~ 49 (76)
+|++. ..|+-|.|+.-||-|+|...
T Consensus 56 ~G~i~I~qkG~~VDp~~~rGpiRlrl~ 82 (85)
T d2ns0a1 56 AGEVEVTQKGAVVDPRSARGPIRIRWT 82 (85)
T ss_dssp TTSEEEEETTEECCTTTCCSCCEEEEC
T ss_pred CCcEEEEECCeecCcccCCCceEeecc
Confidence 55555 46889999999999999764
No 7
>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.11 E-value=25 Score=18.51 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=14.9
Q ss_pred EEEecCCccEEEEEeCCCCeEEEEEeeC
Q psy11405 34 MVHPDKRKGLVYVHQSDDSLMHFCWKDR 61 (76)
Q Consensus 34 ~V~Pd~rKG~i~l~~~~D~l~hf~W~~R 61 (76)
.|+|||=..+-.-...+.+.+.+.|.+.
T Consensus 2 iVk~dPP~nl~v~~~~~~~~l~v~W~~P 29 (105)
T d1erna2 2 VVLLDAPVGLVARLADESGHVVLRWLPP 29 (105)
T ss_dssp CBCCCCCEEEEEEECCC-CCEEEEEECS
T ss_pred ccccCCCCCCEEEEecCCCcEEEEeeec
Confidence 3667776655332222445677777643
No 8
>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.65 E-value=36 Score=17.87 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=18.1
Q ss_pred EEecCCccEEEEEeCCCCeEEEEEeeCCCC
Q psy11405 35 VHPDKRKGLVYVHQSDDSLMHFCWKDRQSG 64 (76)
Q Consensus 35 V~Pd~rKG~i~l~~~~D~l~hf~W~~R~t~ 64 (76)
|+|++-..+ .+....++-+.+.|++...+
T Consensus 1 V~P~~P~nl-~v~~~~~~~v~l~W~~p~~~ 29 (95)
T d2b5ic1 1 VIPWAPENL-TLHKLSESQLELNWNNRFLN 29 (95)
T ss_dssp EECCCCEEE-EEEEEETTEEEEEEECSSCS
T ss_pred CCCcCCCCC-EEEEEeCCEEEEEECCCCCc
Confidence 667776663 55444566777888765443
No 9
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.39 E-value=24 Score=20.70 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=28.3
Q ss_pred eEEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeCC
Q psy11405 20 LVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDRQ 62 (76)
Q Consensus 20 lieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R~ 62 (76)
-++++.|++..--.++.|++.+=.|-+..+.+. +-|...+|=
T Consensus 6 n~~l~~G~~i~v~G~~~~~~~rF~INl~~g~~d-IalHfnpRf 47 (129)
T d1hlca_ 6 NMDMKPGSTLKITGSIADGTDGFVINLGQGTDK-LNLHFNPRF 47 (129)
T ss_dssp EEEECTTCEEEEEEEECTTCCBEEEEEEEETTE-EEEEEEEET
T ss_pred ECCcCCCCEEEEEEEECCCCCEEEEEEEcCCCC-EEEEEeccc
Confidence 467889988865557888888777777765443 334455554
No 10
>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster) [TaxId: 7943]}
Probab=27.33 E-value=12 Score=22.22 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=25.6
Q ss_pred EEeceeeEEcCCEEEecCCccEEEEEeCCCCe-EEEE
Q psy11405 22 EFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSL-MHFC 57 (76)
Q Consensus 22 eFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l-~hf~ 57 (76)
.|++|++..--.++.|++.+=.|-+..+.+.+ +||-
T Consensus 9 ~~~~G~~i~I~G~~~~~~~~F~INl~~~~~dialHfn 45 (135)
T d1c1la_ 9 DFTVGKFLTVGGFINNSPQRFSVNVGESMNSLSLHLD 45 (135)
T ss_dssp CCBTTCCEEEEEEECSSCCEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCEEEEEEEECCCCCEEEEEEecCCCCeeEEEE
Confidence 78899988766677888887777777654444 5553
No 11
>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster) [TaxId: 7943]}
Probab=27.02 E-value=26 Score=20.60 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=29.5
Q ss_pred eeEEEeceeeEEcCCEEEecCCccEEEEEeCCCCeEEEEEeeC
Q psy11405 19 NLVEFKAGKMTMKGKMVHPDKRKGLVYVHQSDDSLMHFCWKDR 61 (76)
Q Consensus 19 ~lieFkAGK~~~~g~~V~Pd~rKG~i~l~~~~D~l~hf~W~~R 61 (76)
.-+.|++|++..--.++.|++.+=.|-+..+.+. +-|...+|
T Consensus 6 ~n~p~~~G~~i~v~G~v~~~~~~F~INl~~~~~d-IalHfnpR 47 (134)
T d1is3a_ 6 RNIPFKLGMYLTVGGVVNSNATRFSINVGESTDS-IAMHMDHR 47 (134)
T ss_dssp EEEEEETTCCEEEEEEECTTCCEEEEEEEEETTE-EEEEEEEE
T ss_pred EeCCCCCCCEEEEEEEECCCCCEEEEEEECCCCC-EEEEEEee
Confidence 3467899998876668888888778888765443 43555555
No 12
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.71 E-value=30 Score=17.86 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=20.8
Q ss_pred CCCcceeEEEeceeeEEcCCEEEecCCccE
Q psy11405 14 RSQSKNLVEFKAGKMTMKGKMVHPDKRKGL 43 (76)
Q Consensus 14 ~~~~~~lieFkAGK~~~~g~~V~Pd~rKG~ 43 (76)
++.++==+.||.|-|.++|+-+.-....|.
T Consensus 15 R~KnKWKc~lKdGim~ingkdyvF~ka~gE 44 (47)
T d1nvpc_ 15 RSKNKWKFHLKDGIMNLNGRDYIFSKAIGD 44 (47)
T ss_dssp EETTEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eecceEEEEEEeeEEEECCcEEEEEeeeee
Confidence 345566678999999999986554444443
No 13
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1 {Leishmania major [TaxId: 5664]}
Probab=20.92 E-value=36 Score=20.67 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=25.3
Q ss_pred CcceeEEEeceeeEEcCCEEEecCC--ccEEEEEe
Q psy11405 16 QSKNLVEFKAGKMTMKGKMVHPDKR--KGLVYVHQ 48 (76)
Q Consensus 16 ~~~~lieFkAGK~~~~g~~V~Pd~r--KG~i~l~~ 48 (76)
+..+-++|+-|+..+.|..|.|.=. -|+||-.-
T Consensus 7 ~~~~~v~f~~G~P~v~G~~v~~cF~~~nGlLfRIV 41 (131)
T d2fe0a1 7 SENSSVTYVNGRPTFVGEEVTKGFEKDNGLLFRIV 41 (131)
T ss_dssp CCSSSCCCSSCCCSCCCSEEEESSSSTTCSEEEEE
T ss_pred CCCCceEEECCCCccccCEEEEeEecCCeEEEEEE
Confidence 4557789999999999988877664 37887654
Done!