Query psy11409
Match_columns 320
No_of_seqs 251 out of 1371
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0129|consensus 100.0 5.7E-83 1.2E-87 624.9 20.7 259 53-311 259-520 (520)
2 TIGR01659 sex-lethal sex-letha 100.0 6.8E-29 1.5E-33 240.9 19.1 150 51-224 105-255 (346)
3 KOG4205|consensus 100.0 6.6E-29 1.4E-33 236.6 10.3 176 52-249 5-180 (311)
4 TIGR01645 half-pint poly-U bin 100.0 1.9E-27 4.1E-32 243.7 19.1 175 52-243 106-282 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.4E-26 5.2E-31 220.7 21.6 206 15-223 47-330 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.9E-26 6.2E-31 220.2 17.9 148 52-223 2-150 (352)
7 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-25 3.7E-30 222.5 18.7 162 50-223 86-247 (457)
8 TIGR01628 PABP-1234 polyadenyl 99.9 1.9E-24 4E-29 221.1 17.3 146 55-223 2-148 (562)
9 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.7E-24 1.2E-28 214.1 20.2 171 50-223 172-356 (509)
10 KOG0144|consensus 99.9 6.6E-25 1.4E-29 212.2 12.4 153 52-224 33-185 (510)
11 TIGR01628 PABP-1234 polyadenyl 99.9 2.4E-23 5.1E-28 212.9 17.8 189 14-223 43-238 (562)
12 KOG0148|consensus 99.9 1.9E-23 4.2E-28 192.3 13.4 155 53-223 62-219 (321)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 4.8E-22 1.1E-26 203.4 19.0 185 10-223 7-201 (578)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.5E-22 1.2E-26 200.1 17.8 148 52-223 1-153 (481)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 6.6E-21 1.4E-25 195.1 19.3 182 13-223 99-288 (578)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.4E-20 7.4E-25 186.7 20.6 184 52-242 294-499 (509)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.4E-20 7.3E-25 187.2 19.6 160 51-223 273-455 (481)
18 KOG0131|consensus 99.8 7.9E-21 1.7E-25 166.5 11.7 167 53-247 9-179 (203)
19 KOG0127|consensus 99.8 3.4E-20 7.4E-25 183.8 16.4 170 50-224 114-354 (678)
20 KOG0127|consensus 99.8 4.4E-20 9.6E-25 183.0 16.0 184 52-245 4-196 (678)
21 KOG0145|consensus 99.8 2.5E-20 5.4E-25 171.2 11.9 166 51-240 39-204 (360)
22 KOG0109|consensus 99.8 2.6E-20 5.6E-25 173.1 9.8 168 54-267 3-177 (346)
23 KOG0117|consensus 99.8 2.3E-19 5.1E-24 174.5 15.0 139 53-220 83-224 (506)
24 KOG0145|consensus 99.8 9.5E-19 2.1E-23 160.8 16.9 212 9-223 79-339 (360)
25 KOG0124|consensus 99.8 6.9E-20 1.5E-24 174.6 9.5 161 54-227 114-275 (544)
26 TIGR01622 SF-CC1 splicing fact 99.8 2E-17 4.4E-22 164.7 19.6 183 53-247 186-449 (457)
27 KOG0123|consensus 99.8 2.7E-18 5.9E-23 168.1 12.6 189 12-223 36-227 (369)
28 KOG0123|consensus 99.8 9.3E-18 2E-22 164.4 15.0 133 55-224 3-135 (369)
29 KOG0147|consensus 99.7 2.3E-18 5E-23 171.1 6.7 167 53-230 179-347 (549)
30 KOG0117|consensus 99.7 1.1E-16 2.5E-21 155.9 13.7 151 49-223 160-312 (506)
31 KOG0149|consensus 99.7 4.4E-17 9.6E-22 147.9 7.6 72 162-234 13-84 (247)
32 KOG0110|consensus 99.6 1.3E-15 2.9E-20 155.1 13.0 153 55-223 517-674 (725)
33 KOG0105|consensus 99.6 3.7E-15 8E-20 131.4 13.9 154 52-224 5-170 (241)
34 KOG0144|consensus 99.6 2.3E-15 4.9E-20 146.4 10.4 63 160-223 423-485 (510)
35 KOG0148|consensus 99.6 1.9E-15 4.1E-20 139.8 8.8 119 52-223 5-123 (321)
36 KOG0149|consensus 99.6 1.7E-15 3.8E-20 137.6 7.0 66 54-121 13-78 (247)
37 PLN03134 glycine-rich RNA-bind 99.6 7.5E-15 1.6E-19 126.2 10.5 79 159-242 32-111 (144)
38 KOG0146|consensus 99.6 4.7E-14 1E-18 130.5 14.8 189 48-242 14-364 (371)
39 KOG4211|consensus 99.5 1.1E-13 2.5E-18 136.5 15.3 153 55-224 12-165 (510)
40 PLN03134 glycine-rich RNA-bind 99.5 9.5E-14 2E-18 119.4 10.2 78 50-129 31-109 (144)
41 COG0724 RNA-binding proteins ( 99.5 4.4E-13 9.5E-18 119.4 13.9 166 53-222 115-285 (306)
42 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.3E-18 101.1 7.5 58 164-223 1-58 (70)
43 TIGR01659 sex-lethal sex-letha 99.5 3.2E-13 7E-18 131.5 10.7 64 159-223 105-168 (346)
44 PF00076 RRM_1: RNA recognitio 99.4 4.1E-13 8.8E-18 98.7 7.1 61 56-119 1-61 (70)
45 PF14259 RRM_6: RNA recognitio 99.4 1.3E-12 2.8E-17 97.2 7.3 64 164-229 1-65 (70)
46 KOG0113|consensus 99.3 3.8E-12 8.3E-17 119.3 8.5 81 152-233 92-173 (335)
47 PLN03120 nucleic acid binding 99.3 6.2E-12 1.3E-16 117.2 9.5 74 161-242 4-77 (260)
48 PF14259 RRM_6: RNA recognitio 99.3 7.9E-12 1.7E-16 93.0 7.3 60 56-118 1-60 (70)
49 KOG4206|consensus 99.3 8.8E-11 1.9E-15 106.5 15.4 159 55-224 11-203 (221)
50 KOG4205|consensus 99.2 4.4E-12 9.5E-17 121.5 4.5 81 160-245 5-85 (311)
51 KOG0125|consensus 99.2 9E-12 2E-16 118.1 6.2 82 158-242 93-185 (376)
52 TIGR01645 half-pint poly-U bin 99.2 1.8E-11 3.9E-16 126.4 8.7 64 159-223 105-168 (612)
53 PLN03120 nucleic acid binding 99.2 2.3E-11 4.9E-16 113.5 8.5 71 53-128 4-74 (260)
54 KOG4212|consensus 99.2 1.8E-10 3.9E-15 112.8 14.7 165 53-223 44-275 (608)
55 smart00362 RRM_2 RNA recogniti 99.2 5.1E-11 1.1E-15 86.0 8.2 58 163-223 1-58 (72)
56 PLN03121 nucleic acid binding 99.2 4E-11 8.6E-16 110.5 9.3 73 161-242 5-78 (243)
57 COG0724 RNA-binding proteins ( 99.2 4.1E-11 8.9E-16 106.7 8.6 64 161-225 115-178 (306)
58 KOG0122|consensus 99.2 2.9E-11 6.2E-16 110.8 7.1 63 160-223 188-250 (270)
59 smart00360 RRM RNA recognition 99.2 7.3E-11 1.6E-15 84.8 7.7 58 166-224 1-58 (71)
60 PLN03121 nucleic acid binding 99.2 5.7E-11 1.2E-15 109.4 7.8 63 53-120 5-67 (243)
61 KOG0106|consensus 99.2 5.8E-11 1.3E-15 108.1 7.4 160 54-239 2-165 (216)
62 KOG0126|consensus 99.2 4E-12 8.6E-17 112.1 -0.8 62 161-223 35-96 (219)
63 KOG0113|consensus 99.1 1.5E-10 3.2E-15 108.7 9.2 69 50-120 98-166 (335)
64 smart00362 RRM_2 RNA recogniti 99.1 2.5E-10 5.5E-15 82.3 8.5 60 55-118 1-60 (72)
65 KOG0107|consensus 99.1 1.4E-10 3.1E-15 101.7 7.6 70 53-129 10-82 (195)
66 KOG0107|consensus 99.1 5.8E-10 1.3E-14 97.9 10.8 75 161-245 10-87 (195)
67 PLN03213 repressor of silencin 99.1 1.6E-10 3.5E-15 114.5 8.1 59 160-223 9-69 (759)
68 KOG0110|consensus 99.1 7.9E-10 1.7E-14 113.5 13.2 170 53-233 385-590 (725)
69 KOG0125|consensus 99.1 2E-10 4.3E-15 109.1 8.2 90 49-143 92-185 (376)
70 smart00360 RRM RNA recognition 99.1 4E-10 8.7E-15 80.9 7.7 59 58-118 1-59 (71)
71 cd00590 RRM RRM (RNA recogniti 99.1 7.3E-10 1.6E-14 80.3 8.4 59 163-223 1-59 (74)
72 KOG4210|consensus 99.1 3.5E-10 7.6E-15 107.6 7.6 179 51-245 86-266 (285)
73 KOG0121|consensus 99.0 6.6E-10 1.4E-14 93.2 7.1 62 160-222 35-96 (153)
74 KOG0128|consensus 99.0 3.9E-11 8.4E-16 124.9 -0.5 131 53-224 667-797 (881)
75 KOG0122|consensus 99.0 8.6E-10 1.9E-14 101.2 7.9 68 52-121 188-255 (270)
76 cd00590 RRM RRM (RNA recogniti 99.0 2.4E-09 5.1E-14 77.6 8.7 63 55-120 1-63 (74)
77 PLN03213 repressor of silencin 99.0 8.1E-10 1.8E-14 109.6 8.0 64 51-120 8-73 (759)
78 KOG0131|consensus 99.0 6.5E-10 1.4E-14 98.2 6.5 64 159-223 7-70 (203)
79 KOG0126|consensus 99.0 5.4E-11 1.2E-15 105.0 -0.4 78 50-129 32-110 (219)
80 KOG0147|consensus 99.0 4.8E-09 1E-13 105.3 12.6 73 55-129 280-353 (549)
81 KOG1457|consensus 99.0 5.8E-09 1.3E-13 94.9 11.9 165 52-222 33-266 (284)
82 KOG0108|consensus 99.0 1.1E-09 2.3E-14 109.4 7.9 61 162-223 19-79 (435)
83 KOG4207|consensus 99.0 1.1E-09 2.4E-14 98.5 6.6 82 159-243 11-93 (256)
84 KOG1365|consensus 98.9 4E-09 8.8E-14 102.0 9.4 181 56-245 164-362 (508)
85 KOG0121|consensus 98.9 1.8E-09 3.9E-14 90.6 3.9 70 48-119 31-100 (153)
86 KOG0114|consensus 98.9 6.3E-09 1.4E-13 84.5 6.7 60 160-223 17-76 (124)
87 KOG0111|consensus 98.8 1.6E-09 3.5E-14 98.3 3.3 63 160-223 9-71 (298)
88 KOG0130|consensus 98.8 8.4E-09 1.8E-13 87.4 6.3 64 161-225 72-135 (170)
89 smart00361 RRM_1 RNA recogniti 98.8 1.4E-08 3E-13 76.4 6.6 48 175-223 2-56 (70)
90 KOG4454|consensus 98.8 2.3E-09 5.1E-14 97.1 1.4 131 53-222 9-143 (267)
91 KOG0111|consensus 98.7 1.4E-08 3.1E-13 92.2 5.3 78 50-130 7-88 (298)
92 KOG0146|consensus 98.7 1.6E-08 3.5E-13 94.1 5.7 62 160-223 18-79 (371)
93 KOG0108|consensus 98.7 3.6E-08 7.8E-13 98.5 8.2 75 54-130 19-94 (435)
94 KOG0114|consensus 98.7 6.1E-08 1.3E-12 78.8 7.7 62 54-120 19-80 (124)
95 KOG4212|consensus 98.7 3.4E-08 7.4E-13 97.1 7.2 62 161-223 44-105 (608)
96 KOG4211|consensus 98.7 1.5E-07 3.2E-12 93.7 11.7 165 52-223 102-340 (510)
97 KOG1190|consensus 98.6 6.2E-08 1.3E-12 94.6 6.9 163 49-225 24-212 (492)
98 KOG1548|consensus 98.6 5.5E-07 1.2E-11 86.4 12.8 160 54-223 135-333 (382)
99 smart00361 RRM_1 RNA recogniti 98.6 1.9E-07 4.2E-12 70.2 7.2 54 66-119 1-59 (70)
100 KOG0226|consensus 98.6 1.3E-07 2.8E-12 87.6 6.6 149 54-223 97-251 (290)
101 KOG0105|consensus 98.6 1E-07 2.2E-12 84.7 5.6 62 160-225 5-66 (241)
102 KOG4207|consensus 98.5 1.7E-07 3.7E-12 84.5 5.7 63 55-119 15-77 (256)
103 KOG0153|consensus 98.5 2.5E-07 5.3E-12 88.8 6.9 59 161-226 228-286 (377)
104 KOG0120|consensus 98.5 6.2E-07 1.3E-11 90.7 9.3 163 51-225 173-352 (500)
105 KOG0415|consensus 98.4 2.8E-07 6.1E-12 88.7 5.5 72 159-231 237-309 (479)
106 KOG0109|consensus 98.4 2.4E-07 5.2E-12 87.2 4.4 83 162-255 3-93 (346)
107 KOG0124|consensus 98.4 4.3E-07 9.2E-12 87.8 4.9 62 162-224 114-175 (544)
108 KOG0116|consensus 98.3 7.1E-07 1.5E-11 88.9 6.4 73 53-128 288-361 (419)
109 KOG4208|consensus 98.3 1E-06 2.3E-11 79.3 6.3 68 51-120 47-115 (214)
110 KOG0132|consensus 98.3 1.1E-06 2.5E-11 91.4 7.2 109 161-279 421-530 (894)
111 KOG0153|consensus 98.3 2.1E-06 4.6E-11 82.5 8.2 93 12-119 194-286 (377)
112 KOG0120|consensus 98.3 5E-06 1.1E-10 84.2 11.0 183 52-245 288-491 (500)
113 KOG0132|consensus 98.2 1.7E-06 3.7E-11 90.1 6.4 61 51-119 419-479 (894)
114 PF13893 RRM_5: RNA recognitio 98.2 3.2E-06 7E-11 60.4 5.9 40 178-223 1-40 (56)
115 KOG4208|consensus 98.2 3.5E-06 7.5E-11 76.0 6.9 64 160-224 48-112 (214)
116 KOG0116|consensus 98.2 2.6E-06 5.6E-11 85.0 6.0 71 160-232 287-358 (419)
117 KOG0130|consensus 98.2 2.5E-06 5.5E-11 72.5 5.0 65 53-119 72-136 (170)
118 PF13893 RRM_5: RNA recognitio 98.1 7.5E-06 1.6E-10 58.4 6.2 43 70-119 1-43 (56)
119 KOG0129|consensus 98.1 6.2E-06 1.3E-10 82.8 7.5 89 51-149 368-457 (520)
120 KOG4209|consensus 98.1 3.2E-06 6.9E-11 78.3 5.0 72 161-233 101-172 (231)
121 KOG0533|consensus 98.0 1.9E-05 4.2E-10 73.5 8.3 68 162-231 84-152 (243)
122 KOG4206|consensus 98.0 1.7E-05 3.6E-10 72.4 7.6 62 158-223 6-71 (221)
123 PF04059 RRM_2: RNA recognitio 98.0 4.7E-05 1E-09 61.5 9.3 63 161-223 1-64 (97)
124 KOG1365|consensus 98.0 8.1E-05 1.8E-09 72.7 11.5 159 56-229 63-238 (508)
125 KOG1456|consensus 97.9 0.00042 9E-09 67.7 15.2 164 50-225 284-468 (494)
126 KOG4454|consensus 97.9 6.7E-06 1.4E-10 75.0 2.7 60 160-222 8-67 (267)
127 KOG0415|consensus 97.9 1.1E-05 2.3E-10 78.0 4.2 66 50-117 236-301 (479)
128 KOG0112|consensus 97.9 1.6E-05 3.4E-10 84.2 5.1 141 50-222 369-509 (975)
129 KOG4661|consensus 97.8 3.2E-05 6.9E-10 78.6 6.7 62 161-223 405-466 (940)
130 KOG0226|consensus 97.8 2.9E-05 6.3E-10 72.2 5.3 66 51-118 188-253 (290)
131 KOG0151|consensus 97.7 9.7E-05 2.1E-09 76.8 8.6 64 54-119 175-241 (877)
132 KOG4660|consensus 97.6 0.00011 2.3E-09 74.6 6.7 151 48-221 70-230 (549)
133 KOG0151|consensus 97.6 7.2E-05 1.6E-09 77.7 5.5 64 159-223 171-238 (877)
134 KOG1457|consensus 97.5 0.00022 4.7E-09 65.4 6.7 63 160-223 33-96 (284)
135 KOG4307|consensus 97.5 0.0005 1.1E-08 71.5 10.0 179 54-242 312-511 (944)
136 KOG4209|consensus 97.5 0.00017 3.7E-09 66.9 5.2 68 49-118 97-164 (231)
137 KOG4661|consensus 97.4 0.00029 6.2E-09 71.9 6.6 67 51-119 403-469 (940)
138 KOG1190|consensus 97.4 0.0046 9.9E-08 61.2 14.3 155 53-223 297-471 (492)
139 KOG0533|consensus 97.4 0.00048 1E-08 64.3 7.0 65 53-120 83-147 (243)
140 KOG4660|consensus 97.4 0.00026 5.6E-09 71.9 5.7 62 156-223 70-131 (549)
141 KOG1995|consensus 97.3 0.00024 5.3E-09 68.8 4.5 63 160-223 65-135 (351)
142 PF08777 RRM_3: RNA binding mo 97.2 0.00064 1.4E-08 55.6 5.5 54 163-223 3-56 (105)
143 KOG1548|consensus 97.2 0.00066 1.4E-08 65.6 6.3 62 160-223 133-202 (382)
144 KOG4210|consensus 97.0 0.00084 1.8E-08 64.1 4.4 78 49-128 180-258 (285)
145 PF08777 RRM_3: RNA binding mo 96.9 0.0018 3.9E-08 52.9 5.4 55 56-119 4-59 (105)
146 KOG0128|consensus 96.9 8.5E-05 1.8E-09 78.5 -3.3 155 52-227 570-732 (881)
147 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0038 8.3E-08 44.7 5.8 52 162-221 2-53 (53)
148 PF04059 RRM_2: RNA recognitio 96.5 0.0065 1.4E-07 49.1 6.0 63 54-119 2-67 (97)
149 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0041 8.9E-08 44.6 4.1 52 54-114 2-53 (53)
150 KOG0106|consensus 96.4 0.0022 4.7E-08 58.9 2.9 52 162-222 2-53 (216)
151 KOG1456|consensus 96.2 0.046 9.9E-07 53.8 10.5 142 51-223 29-178 (494)
152 KOG4849|consensus 96.1 0.0037 8.1E-08 60.7 3.0 62 54-117 81-144 (498)
153 KOG2314|consensus 96.1 0.015 3.2E-07 59.7 7.1 61 161-223 58-124 (698)
154 KOG1995|consensus 95.9 0.0088 1.9E-07 58.2 4.5 65 53-119 66-138 (351)
155 KOG0115|consensus 95.8 0.017 3.7E-07 54.0 5.5 62 160-223 30-91 (275)
156 COG5175 MOT2 Transcriptional r 95.7 0.027 5.8E-07 54.7 6.7 76 54-129 115-198 (480)
157 PF10309 DUF2414: Protein of u 95.6 0.044 9.6E-07 40.7 6.2 53 53-116 5-61 (62)
158 KOG4676|consensus 95.4 0.025 5.5E-07 55.8 5.4 163 55-223 9-208 (479)
159 KOG1855|consensus 95.3 0.054 1.2E-06 54.1 7.3 73 48-120 226-309 (484)
160 PF08675 RNA_bind: RNA binding 95.2 0.077 1.7E-06 41.8 6.4 55 54-118 9-63 (87)
161 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.048 1E-06 44.3 4.9 67 52-119 5-76 (100)
162 KOG1855|consensus 94.4 0.045 9.8E-07 54.6 4.3 62 160-222 230-304 (484)
163 KOG2193|consensus 94.3 0.023 5.1E-07 56.5 2.0 136 54-223 2-138 (584)
164 KOG4849|consensus 93.9 0.049 1.1E-06 53.2 3.2 60 162-222 81-142 (498)
165 KOG0115|consensus 93.7 0.056 1.2E-06 50.7 3.2 65 53-120 31-95 (275)
166 PF08952 DUF1866: Domain of un 93.3 0.24 5.2E-06 42.9 6.2 64 159-231 25-97 (146)
167 PF07292 NID: Nmi/IFP 35 domai 92.9 0.093 2E-06 41.7 2.9 69 100-184 1-75 (88)
168 KOG2314|consensus 92.9 0.13 2.8E-06 53.0 4.6 64 53-120 58-128 (698)
169 COG5175 MOT2 Transcriptional r 92.9 0.18 3.9E-06 49.1 5.2 70 161-237 114-194 (480)
170 PF05172 Nup35_RRM: Nup53/35/4 92.6 0.58 1.3E-05 38.0 7.1 67 161-229 6-79 (100)
171 PF10309 DUF2414: Protein of u 92.4 0.69 1.5E-05 34.4 6.8 53 162-223 6-61 (62)
172 PF11608 Limkain-b1: Limkain b 92.1 0.45 9.6E-06 37.7 5.6 52 162-223 3-58 (90)
173 PF11608 Limkain-b1: Limkain b 91.3 0.78 1.7E-05 36.4 6.2 54 55-120 4-62 (90)
174 KOG3152|consensus 90.7 0.19 4E-06 47.3 2.7 60 162-222 75-146 (278)
175 KOG4307|consensus 90.3 0.66 1.4E-05 49.2 6.4 60 162-223 868-928 (944)
176 KOG0112|consensus 90.2 0.067 1.5E-06 57.6 -0.8 59 160-220 371-429 (975)
177 PF08675 RNA_bind: RNA binding 89.8 1 2.2E-05 35.6 5.7 54 161-223 8-61 (87)
178 PF03467 Smg4_UPF3: Smg-4/UPF3 89.0 0.6 1.3E-05 41.5 4.5 67 52-118 6-76 (176)
179 KOG2068|consensus 88.4 0.41 8.9E-06 46.5 3.2 66 54-120 78-148 (327)
180 KOG2193|consensus 87.3 0.51 1.1E-05 47.4 3.2 55 162-223 2-56 (584)
181 PF07292 NID: Nmi/IFP 35 domai 85.2 0.99 2.1E-05 35.9 3.2 37 207-243 1-37 (88)
182 KOG4676|consensus 83.6 1.5 3.2E-05 43.7 4.4 80 162-248 8-91 (479)
183 PF03467 Smg4_UPF3: Smg-4/UPF3 83.4 1.8 3.8E-05 38.6 4.4 82 161-242 7-97 (176)
184 PF15023 DUF4523: Protein of u 82.5 4.3 9.4E-05 35.3 6.2 57 159-223 84-144 (166)
185 KOG3152|consensus 82.3 0.76 1.7E-05 43.3 1.8 66 54-119 75-150 (278)
186 KOG2202|consensus 81.1 0.83 1.8E-05 43.0 1.5 48 68-118 83-131 (260)
187 KOG2253|consensus 80.7 1.6 3.5E-05 45.9 3.6 58 155-222 34-91 (668)
188 KOG2068|consensus 80.1 1.1 2.5E-05 43.5 2.1 62 161-223 77-144 (327)
189 PF15023 DUF4523: Protein of u 78.9 4.4 9.6E-05 35.3 5.1 66 54-128 87-156 (166)
190 PF08952 DUF1866: Domain of un 77.6 5.6 0.00012 34.6 5.4 66 53-128 27-101 (146)
191 KOG2253|consensus 74.3 3.1 6.6E-05 43.9 3.5 155 50-222 37-194 (668)
192 KOG2416|consensus 71.4 3.6 7.9E-05 43.0 3.2 63 50-120 441-504 (718)
193 PF11767 SET_assoc: Histone ly 71.1 13 0.00028 27.9 5.4 42 172-223 11-52 (66)
194 KOG2891|consensus 70.3 4.6 9.9E-05 38.7 3.4 98 98-196 76-195 (445)
195 PF14111 DUF4283: Domain of un 69.4 11 0.00024 31.5 5.3 127 55-210 17-151 (153)
196 KOG2202|consensus 68.8 3.5 7.7E-05 38.8 2.3 77 176-257 83-163 (260)
197 KOG1996|consensus 66.7 13 0.00028 36.0 5.5 47 175-222 300-347 (378)
198 PF00643 zf-B_box: B-box zinc 63.8 4.7 0.0001 26.7 1.6 35 245-286 2-36 (42)
199 PF07576 BRAP2: BRCA1-associat 62.5 57 0.0012 26.9 8.0 59 162-222 14-72 (110)
200 KOG2416|consensus 62.0 7.3 0.00016 40.9 3.2 60 158-223 441-500 (718)
201 KOG2591|consensus 61.6 21 0.00045 37.4 6.3 64 48-120 170-235 (684)
202 KOG2891|consensus 61.0 8.6 0.00019 37.0 3.3 37 53-89 149-198 (445)
203 KOG0119|consensus 49.4 8.3 0.00018 39.6 1.2 80 206-289 206-301 (554)
204 TIGR03636 L23_arch archaeal ri 48.3 49 0.0011 25.6 5.1 56 163-221 15-71 (77)
205 PRK14548 50S ribosomal protein 47.1 57 0.0012 25.6 5.4 56 163-221 22-78 (84)
206 KOG2135|consensus 46.8 12 0.00025 38.4 1.8 42 174-222 386-427 (526)
207 PF15513 DUF4651: Domain of un 46.4 25 0.00055 26.2 3.1 18 68-85 9-26 (62)
208 PF03468 XS: XS domain; Inter 45.6 52 0.0011 27.3 5.2 45 174-222 30-75 (116)
209 KOG4574|consensus 42.8 17 0.00037 39.7 2.4 104 9-120 245-357 (1007)
210 KOG4285|consensus 42.5 41 0.00088 32.8 4.6 65 53-126 197-262 (350)
211 KOG1996|consensus 40.3 55 0.0012 31.8 5.1 51 67-118 300-350 (378)
212 COG2824 PhnA Uncharacterized Z 38.0 12 0.00027 30.8 0.3 29 247-285 4-32 (112)
213 KOG2591|consensus 36.5 28 0.0006 36.5 2.7 55 162-223 176-231 (684)
214 KOG4410|consensus 36.4 34 0.00074 33.1 3.1 50 54-110 331-380 (396)
215 KOG4285|consensus 34.7 1.5E+02 0.0033 29.0 7.1 71 162-243 198-268 (350)
216 PF14445 Prok-RING_2: Prokaryo 34.3 8.4 0.00018 27.6 -1.0 35 245-283 6-40 (57)
217 PF02714 DUF221: Domain of unk 33.6 46 0.001 31.6 3.6 43 207-253 1-43 (325)
218 PF00403 HMA: Heavy-metal-asso 32.5 1.7E+02 0.0038 20.3 7.1 54 163-223 1-58 (62)
219 PF03468 XS: XS domain; Inter 32.1 34 0.00075 28.3 2.1 48 65-117 29-77 (116)
220 COG5220 TFB3 Cdk activating ki 31.7 29 0.00062 32.7 1.7 37 244-287 8-50 (314)
221 PF15407 Spo7_2_N: Sporulation 30.9 23 0.00051 26.6 0.9 25 160-184 26-50 (67)
222 PF03854 zf-P11: P-11 zinc fin 27.3 18 0.00039 25.6 -0.3 11 273-283 2-12 (50)
223 KOG2135|consensus 27.3 31 0.00067 35.4 1.2 62 59-128 378-440 (526)
224 PF03439 Spt5-NGN: Early trans 27.2 68 0.0015 24.7 2.9 25 95-119 42-66 (84)
225 PF11478 Tachystatin_B: Antimi 26.0 25 0.00053 23.3 0.2 11 268-278 17-27 (42)
226 PF05189 RTC_insert: RNA 3'-te 25.1 1.8E+02 0.0038 23.1 5.1 48 163-212 12-65 (103)
227 PF04847 Calcipressin: Calcipr 24.8 1.3E+02 0.0028 27.0 4.7 45 66-118 8-52 (184)
228 PF00276 Ribosomal_L23: Riboso 24.3 66 0.0014 25.4 2.4 35 163-197 21-56 (91)
229 PF02714 DUF221: Domain of unk 24.3 1.7E+02 0.0036 27.7 5.7 19 100-118 1-19 (325)
230 KOG4574|consensus 24.1 39 0.00084 37.1 1.3 55 162-223 299-353 (1007)
231 PRK12280 rplW 50S ribosomal pr 24.1 1.9E+02 0.0042 25.4 5.5 35 163-197 23-58 (158)
232 TIGR01873 cas_CT1978 CRISPR-as 24.1 1E+02 0.0022 24.5 3.4 48 52-106 24-74 (87)
233 PF12171 zf-C2H2_jaz: Zinc-fin 24.0 28 0.00062 20.8 0.2 11 273-283 1-11 (27)
234 PF09707 Cas_Cas2CT1978: CRISP 23.7 2.3E+02 0.0049 22.4 5.3 50 159-212 23-72 (86)
235 CHL00030 rpl23 ribosomal prote 23.0 2.4E+02 0.0052 22.5 5.4 36 163-198 20-56 (93)
236 COG4803 Predicted membrane pro 22.7 1.1E+02 0.0025 26.8 3.7 54 15-82 91-144 (170)
237 PF11411 DNA_ligase_IV: DNA li 22.5 57 0.0012 21.7 1.4 16 63-78 19-34 (36)
238 PF07723 LRR_2: Leucine Rich R 22.3 79 0.0017 19.1 1.9 18 100-117 8-25 (26)
239 KOG3702|consensus 21.7 66 0.0014 34.4 2.4 58 162-220 512-569 (681)
240 KOG4410|consensus 21.4 64 0.0014 31.2 2.1 48 162-215 331-378 (396)
241 KOG4367|consensus 21.2 40 0.00087 34.4 0.7 49 247-300 163-212 (699)
242 PF11249 DUF3047: Protein of u 20.1 1.6E+02 0.0035 26.2 4.3 34 176-209 145-178 (183)
243 TIGR00570 cdk7 CDK-activating 20.0 93 0.002 30.3 2.9 41 244-286 1-41 (309)
No 1
>KOG0129|consensus
Probab=100.00 E-value=5.7e-83 Score=624.88 Aligned_cols=259 Identities=63% Similarity=1.106 Sum_probs=252.8
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcc---eEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKG---YAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skG---ygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
++||||||||||++|+.|...|.+||++.++||.|......-.++| |+|++|++|.+|+++|.+|.+..+++|++++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vs 338 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVS 338 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEe
Confidence 6799999999999999999999999999999999876555567888 9999999999999999999999999999999
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
+++++.|.||||||+++|++|+++.++++||++||||||||+++|+++|+.||+++||.|++|.|+||++.|||||.|+|
T Consensus 339 s~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 339 SPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred cCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCHHHHHHHHHhcccccccCccceEEEeccccccccccccccCcccCCCcccccCCccchhhhcchhhhhhhhCCCCC
Q psy11409 210 AFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGR 289 (320)
Q Consensus 210 tF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~~~~~ 289 (320)
||.+..+|.+||+++||+|++.+++|+||||||||||++|+||++++|+|+++||||++.+|||||||.||+++|+++++
T Consensus 419 tFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~eDq~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~CWa~~HS~~~r 498 (520)
T KOG0129|consen 419 TFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVMEDQLCDECGGRRCGGQFAPFFCRNATCFQYYCESCWAKIHSGPGR 498 (520)
T ss_pred eecccHHHHHHHhhheEEEeccccceeeeecceeccccchhhhcCeeccCccCCcccCCccHHhhhchHHHHHhhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccceee
Q psy11409 290 EFHKPLVKEGAYDSLQTRTRVS 311 (320)
Q Consensus 290 ~~h~p~~~~~~~~~~~~~~~~~ 311 (320)
.+|+||+|+++.+++.+++||+
T Consensus 499 ~~HkPlvr~~~dr~~~~~~r~~ 520 (520)
T KOG0129|consen 499 EHHKPLVRPGKDRPRHLPFRWS 520 (520)
T ss_pred hcCCceecccccCCCcCCcCCC
Confidence 9999999999999999999995
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=6.8e-29 Score=240.90 Aligned_cols=150 Identities=24% Similarity=0.232 Sum_probs=123.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEec
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVS 129 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis 129 (320)
....+|||++||+++||++|+++|++||+|+.+.++++. .++++||||||+|.++++|++||+..+.. ..+..|+++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~--~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY--KTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC--CCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 456799999999999999999999999999987777764 47899999999999999999999875532 122222221
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
.. +| ........+|||+|||..+|+++|+++|++ ||.|+.+.|++|+.|+.+||||||
T Consensus 183 ~a---------~p------------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV 240 (346)
T TIGR01659 183 YA---------RP------------GGESIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFV 240 (346)
T ss_pred cc---------cc------------cccccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEE
Confidence 10 00 001113468999999999999999999999 999999999999999999999999
Q ss_pred EecCHHHHHHHHHhc
Q psy11409 210 AFASQASYIAAISAR 224 (320)
Q Consensus 210 tF~~~esa~kAi~~~ 224 (320)
+|.+.++|++||+.-
T Consensus 241 ~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 241 RFNKREEAQEAISAL 255 (346)
T ss_pred EECCHHHHHHHHHHh
Confidence 999999999999863
No 3
>KOG4205|consensus
Probab=99.96 E-value=6.6e-29 Score=236.62 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=146.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
.+.|||||+|+|++|+|.|+++|++||+|.++..+++. .++++|||+||+|.++++|.++|....|..++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~--~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr------- 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP--STGRSRGFGFVTFATPEGVDAVLNARTHKLDGR------- 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC--CCCCcccccceecCCCcchheeecccccccCCc-------
Confidence 46799999999999999999999999999999999986 469999999999999999999999887764332
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
.+++|++-.| +.. .........++||||+||.++++++|+++|++ ||.|..+.|+.|++++++||||||+|
T Consensus 76 ~ve~k~av~r-----~~~---~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~ 146 (311)
T KOG4205|consen 76 SVEPKRAVSR-----EDQ---TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTF 146 (311)
T ss_pred cccceeccCc-----ccc---cccccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEe
Confidence 2333322111 000 00011124679999999999999999999999 99999999999999999999999999
Q ss_pred cCHHHHHHHHHhcccccccCccceEEEecccccccccc
Q psy11409 212 ASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMC 249 (320)
Q Consensus 212 ~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~~~~c 249 (320)
.+++++++++...|+.+.+ +.|+||-++|++.+-
T Consensus 147 ~~e~sVdkv~~~~f~~~~g----k~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 147 DSEDSVDKVTLQKFHDFNG----KKVEVKRAIPKEVMQ 180 (311)
T ss_pred ccccccceecccceeeecC----ceeeEeeccchhhcc
Confidence 9999999999999998875 688888888887764
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.9e-27 Score=243.67 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=133.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
...+|||||||++++|++|+++|++||+|..+.++++. .++++||||||+|++++++++||+..++. .++..+++..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~--~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP--ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC--CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34699999999999999999999999999977666653 47899999999999999999999877543 3344455542
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
+.-.+..-....+ ........++|||||||.++++++|+++|++ ||.|.+++|..|+.++.+||||||+
T Consensus 184 p~~~p~a~~~~~~----------~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVe 252 (612)
T TIGR01645 184 PSNMPQAQPIIDM----------VQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIE 252 (612)
T ss_pred ccccccccccccc----------ccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEE
Confidence 2110000000000 0011223479999999999999999999999 9999999999999999999999999
Q ss_pred ecCHHHHHHHHHhcc-cccccCccceEEEecccc
Q psy11409 211 FASQASYIAAISARF-VQLQHGEIDKRVEVKPYV 243 (320)
Q Consensus 211 F~~~esa~kAi~~~~-~~i~~~~~~k~v~ikpy~ 243 (320)
|.+.++|.+||+.-. ..|. .+.|+|...+
T Consensus 253 Fe~~e~A~kAI~amNg~elg----Gr~LrV~kAi 282 (612)
T TIGR01645 253 YNNLQSQSEAIASMNLFDLG----GQYLRVGKCV 282 (612)
T ss_pred ECCHHHHHHHHHHhCCCeeC----CeEEEEEecC
Confidence 999999999998633 2343 3466666554
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.4e-26 Score=220.68 Aligned_cols=206 Identities=15% Similarity=0.092 Sum_probs=141.5
Q ss_pred CccCCCCcchhhHHHHHHhhhhcCCCCC----CCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCC
Q psy11409 15 YISAGLDDASLLDDFLLLLSRALVPNLG----PNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAES 90 (320)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~----~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~ 90 (320)
|+-+-..+...+++.|..+++....... ............+|||+|||.++++++|+++|++||+|..+....+.
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~- 125 (352)
T TIGR01661 47 YGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN- 125 (352)
T ss_pred EEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC-
Confidence 4445556777888888777766554311 01111123356799999999999999999999999999865544432
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHhCccCC-----CceEEEecCCCc-c-CCCccc--------------ccccc----
Q psy11409 91 KSYFPPKGYAFLLFQDESSVQQLIDACIVDE-----DKCYLCVSSPTI-K-DKPVQI--------------RPWKL---- 145 (320)
Q Consensus 91 ~~tg~skGygFV~F~~eesv~kaL~~~~~~~-----~~~~vkis~~~~-~-~K~vqv--------------rPw~~---- 145 (320)
.++.++|||||.|++.++|++||+..++.. ..+.++.+.... . .+..+. .+|..
T Consensus 126 -~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (352)
T TIGR01661 126 -VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAG 204 (352)
T ss_pred -CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccC
Confidence 357899999999999999999998876541 123333332110 0 000000 00000
Q ss_pred -------------CCcccc----------------------cC----------CC----CCCCCCCeEEEcCCCccchHH
Q psy11409 146 -------------TDADFV----------------------LD----------AS----MPLDPRKTVFVGGVPRPLKAL 176 (320)
Q Consensus 146 -------------~d~~y~----------------------~~----------~~----~~~~~~~tVFVGnLp~~~Tee 176 (320)
....+. .. .. ......++|||+|||+.+|++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~ 284 (352)
T TIGR01661 205 IGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDET 284 (352)
T ss_pred CCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHH
Confidence 000000 00 00 001123479999999999999
Q ss_pred HHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 177 ELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 177 dL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+|+++|++ ||.|++|+|++|+.|+.+||||||+|.+.++|.+||+.
T Consensus 285 ~L~~~F~~-fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 285 VLWQLFGP-FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred HHHHHHHh-CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999975
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.9e-26 Score=220.15 Aligned_cols=148 Identities=19% Similarity=0.222 Sum_probs=122.8
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
+..+|||||||.++||++|+++|++||+|..+.++++. .+|+++|||||.|.++++|++||+..++. ..+..+++.-
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~--~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK--VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC--CCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 46799999999999999999999999999988887764 46899999999999999999999876542 1222222211
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
. +| ........+|||+|||..+|+++|+++|++ ||.|..+.|+.|..++.++|||||+
T Consensus 80 a---------~~------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~ 137 (352)
T TIGR01661 80 A---------RP------------SSDSIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIR 137 (352)
T ss_pred e---------cc------------cccccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEE
Confidence 0 00 001113468999999999999999999999 9999999999998899999999999
Q ss_pred ecCHHHHHHHHHh
Q psy11409 211 FASQASYIAAISA 223 (320)
Q Consensus 211 F~~~esa~kAi~~ 223 (320)
|.+.++|.+||+.
T Consensus 138 f~~~~~A~~ai~~ 150 (352)
T TIGR01661 138 FDKRDEADRAIKT 150 (352)
T ss_pred ECCHHHHHHHHHH
Confidence 9999999999974
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.7e-25 Score=222.55 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=125.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.++++. .+++++|||||+|.+.++|++||........+..|.+.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~--~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR--NSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC--CCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 3456799999999999999999999999999977777653 47899999999999999999999754443333333332
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
....+ +....... ..........++|||||||..+|+++|.++|++ ||.|..|.|..|+.+|.++|||||
T Consensus 164 ~~~~~-~~~~~~~~--------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 164 SSQAE-KNRAAKAA--------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred ecchh-hhhhhhcc--------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEE
Confidence 21111 00000000 000011123589999999999999999999999 999999999999999999999999
Q ss_pred EecCHHHHHHHHHh
Q psy11409 210 AFASQASYIAAISA 223 (320)
Q Consensus 210 tF~~~esa~kAi~~ 223 (320)
+|.+.++|.+|++.
T Consensus 234 ~f~~~e~A~~A~~~ 247 (457)
T TIGR01622 234 QFHDAEEAKEALEV 247 (457)
T ss_pred EECCHHHHHHHHHh
Confidence 99999999999874
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=1.9e-24 Score=221.09 Aligned_cols=146 Identities=18% Similarity=0.304 Sum_probs=120.5
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCCCc
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSPTI 133 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~~~ 133 (320)
.|||||||+++||++|+++|++||+|..+++.++. .+++++|||||.|.+.++|++||+..+.. .++..++|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~--~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~---- 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS--VTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM---- 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee----
Confidence 69999999999999999999999999988777764 46899999999999999999999877643 222222221
Q ss_pred cCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecC
Q psy11409 134 KDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFAS 213 (320)
Q Consensus 134 ~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~ 213 (320)
|...+ +........+|||+|||.++|+++|+++|++ ||.|.++.|.+| ++|.+||||||.|.+
T Consensus 76 ---------~s~~~------~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~-~~g~skg~afV~F~~ 138 (562)
T TIGR01628 76 ---------WSQRD------PSLRRSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATD-ENGKSRGYGFVHFEK 138 (562)
T ss_pred ---------ccccc------ccccccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeec-CCCCcccEEEEEECC
Confidence 21111 1112223468999999999999999999999 999999999999 489999999999999
Q ss_pred HHHHHHHHHh
Q psy11409 214 QASYIAAISA 223 (320)
Q Consensus 214 ~esa~kAi~~ 223 (320)
.++|.+||+.
T Consensus 139 ~e~A~~Ai~~ 148 (562)
T TIGR01628 139 EESAKAAIQK 148 (562)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.7e-24 Score=214.08 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=118.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEe------cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVD------WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDK 123 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~------~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~ 123 (320)
....++|||||||+++|+++|+++|++|+..... -++.. ...++++|||||+|.+.++|++||........+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~--~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g 249 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSS--VNINKEKNFAFLEFRTVEEATFAMALDSIIYSN 249 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEE--EEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeC
Confidence 3456899999999999999999999986322210 00000 012467899999999999999999633323344
Q ss_pred eEEEecCCCccCCCcccccc--ccCCcccc------cCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEe
Q psy11409 124 CYLCVSSPTIKDKPVQIRPW--KLTDADFV------LDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGID 195 (320)
Q Consensus 124 ~~vkis~~~~~~K~vqvrPw--~~~d~~y~------~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~ 195 (320)
..|+|..+.-.....+..|. ......+. .......+...+|||||||..+|+++|.++|++ ||.|..+.|+
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~ 328 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKAFNLI 328 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEE
Confidence 55666432110000000000 00000000 001112345689999999999999999999999 9999999999
Q ss_pred cCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 196 TDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 196 ~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.|+.+|.++|||||+|.+.++|.+||+.
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 9999999999999999999999999975
No 10
>KOG0144|consensus
Probab=99.92 E-value=6.6e-25 Score=212.16 Aligned_cols=153 Identities=21% Similarity=0.286 Sum_probs=129.1
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
+.-|+|||.||..++|++|+++|++||.|.++.+.||. .++.++|||||+|.+.+++.+|+++++... .+ |
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk--~t~~s~gcCFv~~~trk~a~~a~~Alhn~k-----tl--p 103 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK--STGQSKGCCFVKYYTRKEADEAINALHNQK-----TL--P 103 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc--ccCcccceEEEEeccHHHHHHHHHHhhccc-----cc--C
Confidence 35699999999999999999999999999988888875 578999999999999999999999997531 01 1
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
.| --+||++|.. ++ .+++...+++|||.|+..+||+|++++|++ ||-|+++.|++|+ .+.+||+|||+|
T Consensus 104 G~-~~pvqvk~Ad---~E-----~er~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~-~~~sRGcaFV~f 172 (510)
T KOG0144|consen 104 GM-HHPVQVKYAD---GE-----RERIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDP-DGLSRGCAFVKF 172 (510)
T ss_pred CC-Ccceeecccc---hh-----hhccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheecc-cccccceeEEEE
Confidence 11 2467777532 21 123334689999999999999999999999 9999999999995 999999999999
Q ss_pred cCHHHHHHHHHhc
Q psy11409 212 ASQASYIAAISAR 224 (320)
Q Consensus 212 ~~~esa~kAi~~~ 224 (320)
.++|-|..||++-
T Consensus 173 stke~A~~Aika~ 185 (510)
T KOG0144|consen 173 STKEMAVAAIKAL 185 (510)
T ss_pred ehHHHHHHHHHhh
Confidence 9999999999863
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=2.4e-23 Score=212.95 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=140.0
Q ss_pred CCccCCCCcchhhHHHHHHhhhhcCCC----C--CCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccc
Q psy11409 14 PYISAGLDDASLLDDFLLLLSRALVPN----L--GPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHK 87 (320)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~~~~~p~----~--~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k 87 (320)
-|+-+...+...+++.+...+....-. + ...+.........+|||+|||.++|+++|+++|++||+|..+.+.+
T Consensus 43 G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~ 122 (562)
T TIGR01628 43 GYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVAT 122 (562)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeee
Confidence 355566778888899998777663321 0 1111111123346899999999999999999999999999776665
Q ss_pred cCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEE
Q psy11409 88 AESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFV 166 (320)
Q Consensus 88 ~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFV 166 (320)
+. +|++||||||.|+++++|++||+..+.. .++..+.+.. +..... + ........++|||
T Consensus 123 ~~---~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~------------~~~~~~---~-~~~~~~~~~~l~V 183 (562)
T TIGR01628 123 DE---NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGR------------FIKKHE---R-EAAPLKKFTNLYV 183 (562)
T ss_pred cC---CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEec------------cccccc---c-ccccccCCCeEEE
Confidence 43 5789999999999999999999887643 1222222211 000000 0 0112233478999
Q ss_pred cCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 167 GGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 167 GnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+|||.++|+++|+++|++ ||.|.++.|+.|. ++.+||||||+|.+.++|.+|++.
T Consensus 184 ~nl~~~~tee~L~~~F~~-fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 184 KNLDPSVNEDKLRELFAK-FGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred eCCCCcCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHH
Confidence 999999999999999999 9999999999995 899999999999999999999874
No 12
>KOG0148|consensus
Probab=99.90 E-value=1.9e-23 Score=192.27 Aligned_cols=155 Identities=18% Similarity=0.236 Sum_probs=120.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPT 132 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~ 132 (320)
..-||||.|..+|+-++|++.|.+||+|.++.++||. .|++|||||||.|-+.++|++||+..+.. | |.+++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~--~T~KsKGYgFVSf~~k~dAEnAI~~MnGq---W---lG~R~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM--NTGKSKGYGFVSFPNKEDAENAIQQMNGQ---W---LGRRT 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc--cCCcccceeEEeccchHHHHHHHHHhCCe---e---eccce
Confidence 3479999999999999999999999999998888875 68999999999999999999999876543 2 22222
Q ss_pred ccCCCccccccccCCc---ccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 133 IKDKPVQIRPWKLTDA---DFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~---~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
++-.=+.-+|.. .+. .|..--.+....+.+|||||++.-+||++|++.|+. ||.|.+|+|-.| ||||||
T Consensus 134 IRTNWATRKp~e-~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~------qGYaFV 205 (321)
T KOG0148|consen 134 IRTNWATRKPSE-MNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKD------QGYAFV 205 (321)
T ss_pred eeccccccCccc-cCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEecc------cceEEE
Confidence 221101111100 000 011111233445789999999999999999999999 999999999999 599999
Q ss_pred EecCHHHHHHHHHh
Q psy11409 210 AFASQASYIAAISA 223 (320)
Q Consensus 210 tF~~~esa~kAi~~ 223 (320)
.|.++|+|.+||..
T Consensus 206 rF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 206 RFETKEAAAHAIVQ 219 (321)
T ss_pred EecchhhHHHHHHH
Confidence 99999999999964
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=4.8e-22 Score=203.36 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=130.3
Q ss_pred cCCCCCccCCCCcchhhHHHHHHhhhhcCCCCC------CCcccc--CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeE
Q psy11409 10 GGRSPYISAGLDDASLLDDFLLLLSRALVPNLG------PNDILK--LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLV 81 (320)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~------~~~~~~--~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~ 81 (320)
|+..+-...|--+.+-+..+|+....++.-.-. |.-.+. ......+|||||||++++|++|+++|++||+|.
T Consensus 7 ~~~~~~~~~~~~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~ 86 (578)
T TIGR01648 7 GSKVQEGTKGTPDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIY 86 (578)
T ss_pred CCcccccccCCccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEE
Confidence 444444444545555566666655555433211 111111 122357999999999999999999999999999
Q ss_pred EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCC
Q psy11409 82 VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPR 161 (320)
Q Consensus 82 v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~ 161 (320)
.+.++++. ++++||||||+|.++++|++||+..+.. .+ . ..+.+.+. .....
T Consensus 87 ~vrl~~D~---sG~sRGfaFV~F~~~e~A~~Ai~~lng~----~i--~----~Gr~l~V~---------------~S~~~ 138 (578)
T TIGR01648 87 ELRLMMDF---SGQNRGYAFVTFCGKEEAKEAVKLLNNY----EI--R----PGRLLGVC---------------ISVDN 138 (578)
T ss_pred EEEEEECC---CCCccceEEEEeCCHHHHHHHHHHcCCC----ee--c----CCcccccc---------------ccccC
Confidence 87776653 5899999999999999999999886532 11 0 01111111 01235
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCC-CeeEEEE-ecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYG-GVCYAGI-DTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG-~V~~v~I-~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+|||+|||.++|+++|.+.|++ ++ .|+.+.+ ..+.++++++|||||+|.++++|.+|+..
T Consensus 139 ~rLFVgNLP~~~TeeeL~eeFsk-v~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 139 CRLFVGGIPKNKKREEILEEFSK-VTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred ceeEeecCCcchhhHHHHHHhhc-ccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHH
Confidence 78999999999999999999999 75 3544433 33445778999999999999999999864
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=5.5e-22 Score=200.13 Aligned_cols=148 Identities=22% Similarity=0.195 Sum_probs=111.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc---C--CCceEE
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV---D--EDKCYL 126 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~---~--~~~~~v 126 (320)
|++.|||||||+++||++|+++|++||+|..+.+++ +||||||.|+++++|++||+.... . +..++|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 578999999999999999999999999999765543 569999999999999999986421 2 233444
Q ss_pred EecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE
Q psy11409 127 CVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA 206 (320)
Q Consensus 127 kis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf 206 (320)
..+.+. .+. ++- +.+. .........+|||+||++.+|+++|+++|+. ||.|..|.|.+|.. +|+
T Consensus 73 ~~s~~~----~~~-~~~---~~~~---~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~~----~~~ 136 (481)
T TIGR01649 73 NYSTSQ----EIK-RDG---NSDF---DSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKNN----VFQ 136 (481)
T ss_pred EecCCc----ccc-cCC---CCcc---cCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecCC----ceE
Confidence 444221 100 100 0000 0111122358999999999999999999998 99999999988753 479
Q ss_pred EEEEecCHHHHHHHHHh
Q psy11409 207 GRVAFASQASYIAAISA 223 (320)
Q Consensus 207 gfVtF~~~esa~kAi~~ 223 (320)
|||+|.+.++|.+|++.
T Consensus 137 afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 137 ALVEFESVNSAQHAKAA 153 (481)
T ss_pred EEEEECCHHHHHHHHHH
Confidence 99999999999999874
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=6.6e-21 Score=195.06 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=127.6
Q ss_pred CCCccCCCCcchhhHHHHHHhhhhcCCCCCCCcc--ccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeE-EecccccC
Q psy11409 13 SPYISAGLDDASLLDDFLLLLSRALVPNLGPNDI--LKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLV-VDWPHKAE 89 (320)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~--~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~-v~~p~k~~ 89 (320)
.-|+=+-..+...+++.++.++.....+ ... +..+....+|||+|||+++|+++|.+.|++++... ..+....
T Consensus 99 RGfaFV~F~~~e~A~~Ai~~lng~~i~~---Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~- 174 (578)
T TIGR01648 99 RGYAFVTFCGKEEAKEAVKLLNNYEIRP---GRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS- 174 (578)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCeecC---CccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc-
Confidence 3455566677888888888777654421 111 12345578999999999999999999999997533 2222211
Q ss_pred CCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEE
Q psy11409 90 SKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFV 166 (320)
Q Consensus 90 ~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFV 166 (320)
....++++|||||+|+++++|.+|++..... ..+..|.++ |...... .........++|||
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd-------------wA~p~~~---~d~~~~~~~k~LfV 238 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD-------------WAEPEEE---VDEDVMAKVKILYV 238 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE-------------eeccccc---ccccccccccEEEE
Confidence 1234689999999999999999999765321 111122221 1110000 00112334589999
Q ss_pred cCCCccchHHHHHHHHhhhC--CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 167 GGVPRPLKALELAMIMDRLY--GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 167 GnLp~~~TeedL~~~F~~~f--G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+|||.++|+++|+++|++ | |.|+.|.++ +|||||+|.+.++|.+|++.
T Consensus 239 gNL~~~~tee~L~~~F~~-f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 239 RNLMTTTTEEIIEKSFSE-FKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred eCCCCCCCHHHHHHHHHh-cCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHH
Confidence 999999999999999999 9 999999875 46999999999999999975
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=3.4e-20 Score=186.74 Aligned_cols=184 Identities=16% Similarity=0.107 Sum_probs=125.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-C--CceEEEe
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-E--DKCYLCV 128 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~--~~~~vki 128 (320)
+..+|||||||+++|+++|+++|++||.|..+.+.++. .+|.++|||||+|.+.++|++||+..++. . ..+.|+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI--ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45799999999999999999999999999976666653 47899999999999999999999987653 2 3344444
Q ss_pred cCCCccCCCcc----ccccccCCcccccC-CCCCCCCCCeEEEcCCCccc----------hHHHHHHHHhhhCCCeeEEE
Q psy11409 129 SSPTIKDKPVQ----IRPWKLTDADFVLD-ASMPLDPRKTVFVGGVPRPL----------KALELAMIMDRLYGGVCYAG 193 (320)
Q Consensus 129 s~~~~~~K~vq----vrPw~~~d~~y~~~-~~~~~~~~~tVFVGnLp~~~----------TeedL~~~F~~~fG~V~~v~ 193 (320)
+.......... ..|-.......... ......+.++|++.||...- ..++|+++|++ ||.|+.|.
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEE
Confidence 32111110000 00000000000000 00112356889999996431 23689999999 99999999
Q ss_pred EecC---CCCCCcceEEEEEecCHHHHHHHHHhcccccccCccc-eEEEeccc
Q psy11409 194 IDTD---PELKYPKGAGRVAFASQASYIAAISARFVQLQHGEID-KRVEVKPY 242 (320)
Q Consensus 194 I~~D---~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~-k~v~ikpy 242 (320)
|+.+ ..++..+|+|||+|.+.++|.+||++ +++..+. +.|.+.-|
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~----lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG----MNGRKFNDRVVVAAFY 499 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHH----cCCCEECCeEEEEEEe
Confidence 9975 34566789999999999999999985 4444443 44444433
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.85 E-value=3.4e-20 Score=187.15 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=116.4
Q ss_pred CCCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEE
Q psy11409 51 FPSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYL 126 (320)
Q Consensus 51 ~~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~v 126 (320)
.++.+|||+|||+ ++|+++|+++|++||.|..+.++++ .+|||||.|.+.++|++||+..++. +..++|
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-------KKETALIEMADPYQAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 3567999999998 6999999999999999997655542 3699999999999999999877653 344444
Q ss_pred EecCCCccCCCccccccccCC-----cccccC-------CC-----CCCCCCCeEEEcCCCccchHHHHHHHHhhhCCC-
Q psy11409 127 CVSSPTIKDKPVQIRPWKLTD-----ADFVLD-------AS-----MPLDPRKTVFVGGVPRPLKALELAMIMDRLYGG- 188 (320)
Q Consensus 127 kis~~~~~~K~vqvrPw~~~d-----~~y~~~-------~~-----~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~- 188 (320)
..+..... .. .++..+.+ .+|... +. ....+.++|||+|||..+|+++|+++|++ ||.
T Consensus 346 ~~s~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~ 421 (481)
T TIGR01649 346 CPSKQQNV-QP--PREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE-NGVH 421 (481)
T ss_pred EEcccccc-cC--CCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHh-cCCc
Confidence 44422100 00 00100000 011110 00 11246689999999999999999999999 998
Q ss_pred -eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 189 -VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 189 -V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
|..+++..++ ++ ++|+|||.|.+.++|.+||..
T Consensus 422 ~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ 455 (481)
T TIGR01649 422 KVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIA 455 (481)
T ss_pred cceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHH
Confidence 8888886553 33 689999999999999999985
No 18
>KOG0131|consensus
Probab=99.85 E-value=7.9e-21 Score=166.50 Aligned_cols=167 Identities=21% Similarity=0.200 Sum_probs=128.6
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEec
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCVS 129 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vkis 129 (320)
..+||||||+..++++-|.++|-+.|+|.....-++. -+..++||||++|.+||+|+-|++-.+.. ++.+++...
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDr--v~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDR--VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhh--hcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5699999999999999999999999999965554543 35689999999999999999999876531 233333222
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeE-EEEecCCCCCCcceEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY-AGIDTDPELKYPKGAGR 208 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~-v~I~~D~~tg~pkGfgf 208 (320)
+ ......+...++|||||.+.+++..|.++|+. ||.+.. -+|+.|+.||.++||||
T Consensus 87 s----------------------~~~~nl~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~ 143 (203)
T KOG0131|consen 87 S----------------------AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGF 143 (203)
T ss_pred c----------------------cccccccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeE
Confidence 1 01123445589999999999999999999998 999765 58999999999999999
Q ss_pred EEecCHHHHHHHHHhcccccccCccceEEEecccccccc
Q psy11409 209 VAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQ 247 (320)
Q Consensus 209 VtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~~~ 247 (320)
|.|++.+++.+||++..=++-+ +.+|.+.-+..++.
T Consensus 144 i~~~sfeasd~ai~s~ngq~l~---nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 144 INYASFEASDAAIGSMNGQYLC---NRPITVSYAFKKDT 179 (203)
T ss_pred EechhHHHHHHHHHHhccchhc---CCceEEEEEEecCC
Confidence 9999999999999875433322 23444444433433
No 19
>KOG0127|consensus
Probab=99.84 E-value=3.4e-20 Score=183.78 Aligned_cols=170 Identities=23% Similarity=0.258 Sum_probs=123.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeE-EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEE
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLC 127 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~-v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vk 127 (320)
..+..+|.|.||||.+.+.+|+.+|++||.|. +.+|.+. .|+-.|||||.|.+..+|.+||+..+.. .++.-|-
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~----dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VA 189 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK----DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVA 189 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC----CCCccceEEEEEeeHHHHHHHHHhccCceecCceeE
Confidence 34578999999999999999999999999998 4566543 3566699999999999999999987653 2332222
Q ss_pred ec----CCCccC---------CCcc----cc--ccc----------c--------CCccc---c---------------c
Q psy11409 128 VS----SPTIKD---------KPVQ----IR--PWK----------L--------TDADF---V---------------L 152 (320)
Q Consensus 128 is----~~~~~~---------K~vq----vr--Pw~----------~--------~d~~y---~---------------~ 152 (320)
++ ..+.+. |.++ .. +-. . .|.+. . .
T Consensus 190 VDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e 269 (678)
T KOG0127|consen 190 VDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEE 269 (678)
T ss_pred Eeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccc
Confidence 21 000000 0000 00 000 0 00000 0 0
Q ss_pred -C---C----CC------CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHH
Q psy11409 153 -D---A----SM------PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218 (320)
Q Consensus 153 -~---~----~~------~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~ 218 (320)
+ . .+ ..+-.+||||.|||+++|+++|+++|++ ||.|.|+.|..|+.|+.++|.|||.|.+...+.
T Consensus 270 ~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~ 348 (678)
T KOG0127|consen 270 SSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQ 348 (678)
T ss_pred ccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHH
Confidence 0 0 00 1122389999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHhc
Q psy11409 219 AAISAR 224 (320)
Q Consensus 219 kAi~~~ 224 (320)
+||++.
T Consensus 349 ~ci~~A 354 (678)
T KOG0127|consen 349 NCIEAA 354 (678)
T ss_pred HHHHhc
Confidence 999876
No 20
>KOG0127|consensus
Probab=99.84 E-value=4.4e-20 Score=182.97 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=134.1
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEe
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCV 128 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vki 128 (320)
++.+|||++||++++.+.|.++|+.+|+|.-+.++.+. .++.+||||||+|.=+++|+.||....+. +..+.+.+
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~--gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNK--GSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP 81 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCC--CcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence 34799999999999999999999999999987777654 46789999999999999999999887662 23333333
Q ss_pred cCCCccCCCccccccccCCcccccC---C--CCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCc
Q psy11409 129 SSPTIKDKPVQIRPWKLTDADFVLD---A--SMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYP 203 (320)
Q Consensus 129 s~~~~~~K~vqvrPw~~~d~~y~~~---~--~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~p 203 (320)
..++.+.+.+ .+-.......... + .....+.-++.|.||||.+..++|..+|++ ||.|..|.|++-++.+.+
T Consensus 82 A~~R~r~e~~--~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklc 158 (678)
T KOG0127|consen 82 AKKRARSEEV--EKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLC 158 (678)
T ss_pred ccccccchhc--ccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCcc
Confidence 3333332211 1110000000000 0 011234568999999999999999999999 999999999999888888
Q ss_pred ceEEEEEecCHHHHHHHHHhc-ccccccCccceEEEecccccc
Q psy11409 204 KGAGRVAFASQASYIAAISAR-FVQLQHGEIDKRVEVKPYVLD 245 (320)
Q Consensus 204 kGfgfVtF~~~esa~kAi~~~-~~~i~~~~~~k~v~ikpy~~~ 245 (320)
|||||+|.+..+|.+|++.- -+.|.+ ..|.|+=+|.+
T Consensus 159 -GFaFV~fk~~~dA~~Al~~~N~~~i~g----R~VAVDWAV~K 196 (678)
T KOG0127|consen 159 -GFAFVQFKEKKDAEKALEFFNGNKIDG----RPVAVDWAVDK 196 (678)
T ss_pred -ceEEEEEeeHHHHHHHHHhccCceecC----ceeEEeeeccc
Confidence 99999999999999999852 233333 35666655533
No 21
>KOG0145|consensus
Probab=99.83 E-value=2.5e-20 Score=171.18 Aligned_cols=166 Identities=18% Similarity=0.217 Sum_probs=133.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecC
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSS 130 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~ 130 (320)
.+...|.|--||-++|+++|+.+|+.-|+|+.+..++|. .+|.|-|||||-|-++++|++|++..+.. ++..
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK--itGqSLGYGFVNYv~p~DAe~AintlNGL------rLQ~ 110 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK--ITGQSLGYGFVNYVRPKDAEKAINTLNGL------RLQN 110 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc--ccccccccceeeecChHHHHHHHhhhcce------eecc
Confidence 345689999999999999999999999999999888875 57999999999999999999999987642 2322
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
++++. .-.|| .+..+ ...++||.|||..+|..||.++|++ ||.|.--+|..|..||.+||.|||.
T Consensus 111 KTIKV--SyARP-----------Ss~~I-k~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiR 175 (360)
T KOG0145|consen 111 KTIKV--SYARP-----------SSDSI-KDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIR 175 (360)
T ss_pred ceEEE--EeccC-----------Chhhh-cccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEE
Confidence 22211 11122 11111 2468999999999999999999999 9999999999999999999999999
Q ss_pred ecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 211 FASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 211 F~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
|+.++.|+.||..-.=+.. ..+...|.||
T Consensus 176 FDKr~EAe~AIk~lNG~~P-~g~tepItVK 204 (360)
T KOG0145|consen 176 FDKRIEAEEAIKGLNGQKP-SGCTEPITVK 204 (360)
T ss_pred ecchhHHHHHHHhccCCCC-CCCCCCeEEE
Confidence 9999999999987443333 3345556555
No 22
>KOG0109|consensus
Probab=99.82 E-value=2.6e-20 Score=173.14 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=135.5
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCCC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSPT 132 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~~ 132 (320)
.|+||||||..+++.+|+.+|++||+|.+|-++| -||||..+++..++.||...++. .++..|+|...+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK----------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec----------ccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 3899999999999999999999999999875544 49999999999999999988875 566666653211
Q ss_pred ccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 133 IKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
- +..++.|+|||||.+.+|++||+..|++ ||.|.++.|..| +|||-|+
T Consensus 73 s-----------------------Ksk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivkd--------y~fvh~d 120 (346)
T KOG0109|consen 73 S-----------------------KSKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVKD--------YAFVHFD 120 (346)
T ss_pred c-----------------------cCCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeecc--------eeEEEEe
Confidence 1 1235689999999999999999999999 999999999877 7999999
Q ss_pred CHHHHHHHHHhcc-cccccCcc-----ceEEEeccccccccccccccCcccCCCcccccCC
Q psy11409 213 SQASYIAAISARF-VQLQHGEI-----DKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCA 267 (320)
Q Consensus 213 ~~esa~kAi~~~~-~~i~~~~~-----~k~v~ikpy~~~~~~c~~c~~~~~~~~~~~y~c~ 267 (320)
-.+++..||..-. -++++.+. +-+++-+|-.-|.+.|+.|+.. +|-+=-|+
T Consensus 121 ~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapgmgDq~~cyrcGke----ghwskEcP 177 (346)
T KOG0109|consen 121 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKE----GHWSKECP 177 (346)
T ss_pred eccchHHHHhcccccccccceeeeeeeccccccCCCCCCHHHheecccc----ccccccCC
Confidence 9999999985411 12222222 2367788998899999999986 56666676
No 23
>KOG0117|consensus
Probab=99.81 E-value=2.3e-19 Score=174.50 Aligned_cols=139 Identities=19% Similarity=0.196 Sum_probs=114.6
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCC--CceEEEecC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDE--DKCYLCVSS 130 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~--~~~~vkis~ 130 (320)
+..||||+||.|+.|++|..+|++-|+|-+...|.|. -+|.+||||||+|.+.+.|++||..++... .+..|+++.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~--~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP--FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecc--cCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5699999999999999999999999999988888874 469999999999999999999999887541 122222210
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCC-CCCcceEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPE-LKYPKGAGRV 209 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~-tg~pkGfgfV 209 (320)
. ..+.+|||||||.+.++|+|.+-|++.=-.|+.|.+..+++ ..+.||||||
T Consensus 161 --------------------------S-van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 161 --------------------------S-VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred --------------------------e-eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEE
Confidence 0 13578999999999999999999999434499998886643 5577999999
Q ss_pred EecCHHHHHHH
Q psy11409 210 AFASQASYIAA 220 (320)
Q Consensus 210 tF~~~esa~kA 220 (320)
.|.++..|..|
T Consensus 214 eYe~H~~Aa~a 224 (506)
T KOG0117|consen 214 EYESHRAAAMA 224 (506)
T ss_pred EeecchhHHHH
Confidence 99999998877
No 24
>KOG0145|consensus
Probab=99.81 E-value=9.5e-19 Score=160.82 Aligned_cols=212 Identities=14% Similarity=0.117 Sum_probs=148.8
Q ss_pred hcCCCCCccCCCCcchhhHHHHHHhhhhcCCC----CCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEec
Q psy11409 9 LGGRSPYISAGLDDASLLDDFLLLLSRALVPN----LGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDW 84 (320)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~----~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~ 84 (320)
-|-+.-|--++-+|+..+++..-++++--.-+ +.-......+-.+..|||.|||..+|..+|.++|++||.|....
T Consensus 79 tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR 158 (360)
T KOG0145|consen 79 TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR 158 (360)
T ss_pred cccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhh
Confidence 34455676677888888888877665532221 11111113345577999999999999999999999999998544
Q ss_pred ccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-----CCceEEEecCCCccCCCcc-------------cccc---
Q psy11409 85 PHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-----EDKCYLCVSSPTIKDKPVQ-------------IRPW--- 143 (320)
Q Consensus 85 p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-----~~~~~vkis~~~~~~K~vq-------------vrPw--- 143 (320)
+..|+ -+|.+||-|||.|+...+|+.||...+.. ...+.||.+..+-..+..+ .-|.
T Consensus 159 iL~dq--vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 159 ILVDQ--VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQ 236 (360)
T ss_pred hhhhc--ccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccch
Confidence 44444 36999999999999999999999987754 1456666653211111000 0000
Q ss_pred ----ccCCc--------cccc---CC-----CC--CC--CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCC
Q psy11409 144 ----KLTDA--------DFVL---DA-----SM--PL--DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPE 199 (320)
Q Consensus 144 ----~~~d~--------~y~~---~~-----~~--~~--~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~ 199 (320)
++.+. .+.. +. .. +. .....|||-||..+++|.-|.++|++ ||-|..|+|++|..
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~t 315 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFT 315 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCc-ccceeeEEEEecCC
Confidence 00000 0000 00 00 11 12368999999999999999999999 99999999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHh
Q psy11409 200 LKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 200 tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
|++.||||||+..+-+.|..||..
T Consensus 316 tnkCKGfgFVtMtNYdEAamAi~s 339 (360)
T KOG0145|consen 316 TNKCKGFGFVTMTNYDEAAMAIAS 339 (360)
T ss_pred cccccceeEEEecchHHHHHHHHH
Confidence 999999999999999999999875
No 25
>KOG0124|consensus
Probab=99.81 E-value=6.9e-20 Score=174.64 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=129.2
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCCC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSPT 132 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~~ 132 (320)
.+||||.|.+.+.|+.|+..|..||+|+..-..=| ..|+++|||+||+|+-+|.++-|++..+.. .|+..+|+..|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWD--p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD--PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccc--cccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 48999999999999999999999999996433222 247999999999999999999999988764 578888887543
Q ss_pred ccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 133 IKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
--+..-+++-.+..+ -..-.+|||..++.+++|+||+..|+. ||+|.++.+.+++.++.+|||||+.|.
T Consensus 192 NmpQAQpiID~vqee----------Ak~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~ 260 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEE----------AKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYN 260 (544)
T ss_pred CCcccchHHHHHHHH----------HHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEec
Confidence 222111111111100 012368999999999999999999998 999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccc
Q psy11409 213 SQASYIAAISARFVQ 227 (320)
Q Consensus 213 ~~esa~kAi~~~~~~ 227 (320)
+..+...||..-.+.
T Consensus 261 n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 261 NLQSQSEAIASMNLF 275 (544)
T ss_pred cccchHHHhhhcchh
Confidence 999999999875543
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.77 E-value=2e-17 Score=164.67 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=124.1
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC-
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS- 130 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~- 130 (320)
..+|||+|||.++||++|+++|++||+|..+.+.++. .+|+++|||||.|.+.++|++||+..+.. .++..|+|.-
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~--~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP--ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC--CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 5799999999999999999999999999866555543 46899999999999999999999877653 2333343331
Q ss_pred -CCccC----CCc------c--cc---------------ccc------cCCcc-----------------ccc-----C-
Q psy11409 131 -PTIKD----KPV------Q--IR---------------PWK------LTDAD-----------------FVL-----D- 153 (320)
Q Consensus 131 -~~~~~----K~v------q--vr---------------Pw~------~~d~~-----------------y~~-----~- 153 (320)
..... +.. + -. .+. +.... ... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 00000 000 0 00 000 00000 000 0
Q ss_pred -----------CCCCCCCCCeEEEcCCCccchH----------HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 154 -----------ASMPLDPRKTVFVGGVPRPLKA----------LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 154 -----------~~~~~~~~~tVFVGnLp~~~Te----------edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
......+.+.|+|.||....++ +||.+.|++ ||.|+.|.|.. +.+.|++||.|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k-~G~v~~v~v~~----~~~~G~~fV~F~ 418 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSK-YGGVVHIYVDT----KNSAGKIYLKFS 418 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHh-cCCeeEEEEeC----CCCceeEEEEEC
Confidence 0001234578999999666553 689999999 99999999863 346799999999
Q ss_pred CHHHHHHHHHhcccccccCccc-eEEEecccccccc
Q psy11409 213 SQASYIAAISARFVQLQHGEID-KRVEVKPYVLDDQ 247 (320)
Q Consensus 213 ~~esa~kAi~~~~~~i~~~~~~-k~v~ikpy~~~~~ 247 (320)
+.++|.+|+++ +++..+. +.|++..+ +++.
T Consensus 419 ~~e~A~~A~~~----lnGr~f~gr~i~~~~~-~~~~ 449 (457)
T TIGR01622 419 SVDAALAAFQA----LNGRYFGGKMITAAFV-VNDV 449 (457)
T ss_pred CHHHHHHHHHH----hcCcccCCeEEEEEEE-cHHH
Confidence 99999999975 5566664 56677666 4443
No 27
>KOG0123|consensus
Probab=99.77 E-value=2.7e-18 Score=168.09 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=145.8
Q ss_pred CCCCccCCCCcchhhHHHHHHhhhhcCCCCCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCC
Q psy11409 12 RSPYISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESK 91 (320)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~ 91 (320)
+.=|+-++..++..+++.++..+.+..-+..-.--+.+..++. |||-||+.++|.++|.++|+.||+|..|.++.+..
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~- 113 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN- 113 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce-eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-
Confidence 5557778889999999999988887655321111122223333 99999999999999999999999999998887653
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcC
Q psy11409 92 SYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGG 168 (320)
Q Consensus 92 ~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGn 168 (320)
| +||| ||.|+++++|++||+..+.. +.++|+-+-.+ +....+| .......-..++|.+
T Consensus 114 --g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~----~~er~~~-----------~~~~~~~~t~v~vk~ 174 (369)
T KOG0123|consen 114 --G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER----KEEREAP-----------LGEYKKRFTNVYVKN 174 (369)
T ss_pred --C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc----hhhhccc-----------ccchhhhhhhhheec
Confidence 4 9999 99999999999999988765 34555433211 1110111 001122346899999
Q ss_pred CCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 169 VPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 169 Lp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.++|+++|.++|++ ||.|.++.++.|. .+.++|||||.|.+.+.+.+|++.
T Consensus 175 ~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 175 LEEDSTDEELKDLFSA-YGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred cccccchHHHHHhhcc-cCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHh
Confidence 9999999999999999 9999999999995 777999999999999999999875
No 28
>KOG0123|consensus
Probab=99.76 E-value=9.3e-18 Score=164.35 Aligned_cols=133 Identities=24% Similarity=0.390 Sum_probs=109.8
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCCcc
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIK 134 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~~~ 134 (320)
.+||| +++||..|.+.|+++|+|....+-++ . + |-|||||.|.+++++++||+..+.+. +.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d--~-t--slgy~yvnf~~~~da~~A~~~~n~~~-----------~~ 63 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD--A-T--SLGYAYVNFQQPADAERALDTMNFDV-----------LK 63 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeec--C-C--ccceEEEecCCHHHHHHHHHHcCCcc-----------cC
Confidence 58999 99999999999999999997655554 2 3 99999999999999999999987652 12
Q ss_pred CCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCH
Q psy11409 135 DKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQ 214 (320)
Q Consensus 135 ~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~ 214 (320)
+|++.+. |... |+.. |||-||+.++|..+|.+.|+. ||+|+++++++|. .| +||+ ||.|+++
T Consensus 64 ~~~~rim-~s~r------------d~~~-~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~-~g-~kg~-FV~f~~e 125 (369)
T KOG0123|consen 64 GKPIRIM-WSQR------------DPSL-VFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDE-NG-SKGY-FVQFESE 125 (369)
T ss_pred CcEEEee-hhcc------------CCce-eeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcC-CC-ceee-EEEeCCH
Confidence 2333222 3222 1222 999999999999999999999 9999999999995 66 9999 9999999
Q ss_pred HHHHHHHHhc
Q psy11409 215 ASYIAAISAR 224 (320)
Q Consensus 215 esa~kAi~~~ 224 (320)
++|.+||+..
T Consensus 126 ~~a~~ai~~~ 135 (369)
T KOG0123|consen 126 ESAKKAIEKL 135 (369)
T ss_pred HHHHHHHHHh
Confidence 9999999853
No 29
>KOG0147|consensus
Probab=99.74 E-value=2.3e-18 Score=171.12 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=130.0
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPT 132 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~ 132 (320)
.+++|+-.|+..+++.+|.++|+.+|+|.++..+.+ +.++++||-+||.|.|+++|-.||....+-..+.+|.+....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D--r~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD--RNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc--ccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 469999999999999999999999999997666554 357899999999999999999999877666556666654332
Q ss_pred ccCCCcc-ccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 133 IKDKPVQ-IRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 133 ~~~K~vq-vrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
.+...++ .-||.-. ... .-|-.+++|||||+++||++|+.+|+. ||.|+.|.++.|.+||..|||||++|
T Consensus 257 aeknr~a~~s~a~~~-------k~~-~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f 327 (549)
T KOG0147|consen 257 AEKNRAANASPALQG-------KGF-TGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITF 327 (549)
T ss_pred HHHHHHHhccccccc-------ccc-ccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEE
Confidence 2222221 1222110 001 112233999999999999999999999 99999999999999999999999999
Q ss_pred cCHHHHHHHHHhcc-ccccc
Q psy11409 212 ASQASYIAAISARF-VQLQH 230 (320)
Q Consensus 212 ~~~esa~kAi~~~~-~~i~~ 230 (320)
.+.++|.+|++... ++|.+
T Consensus 328 ~~~~~ar~a~e~lngfelAG 347 (549)
T KOG0147|consen 328 VNKEDARKALEQLNGFELAG 347 (549)
T ss_pred ecHHHHHHHHHHhccceecC
Confidence 99999999976532 44443
No 30
>KOG0117|consensus
Probab=99.71 E-value=1.1e-16 Score=155.87 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=107.9
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE-ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEE
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV-DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLC 127 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v-~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vk 127 (320)
.|....+|||||||.+.++++|++.|++-++=++ +++.+.. .+..+.||||||.|+|-+.|..|=+... .++ |+
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p-~dk~KNRGFaFveYe~H~~Aa~aRrKl~--~g~--~k 234 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSP-DDKTKNRGFAFVEYESHRAAAMARRKLM--PGK--IK 234 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCc-cccccccceEEEEeecchhHHHHHhhcc--CCc--ee
Confidence 3566789999999999999999999999876443 3333322 2457999999999999998876654321 111 11
Q ss_pred ecCCCccCCCccccccccCCcccccCCCC-CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE
Q psy11409 128 VSSPTIKDKPVQIRPWKLTDADFVLDASM-PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA 206 (320)
Q Consensus 128 is~~~~~~K~vqvrPw~~~d~~y~~~~~~-~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf 206 (320)
+ .+-.++| -|.-. ..++.. ....-+-|||.||+.++|+|.|+++|++ ||.|+.|..++| |
T Consensus 235 l-----wgn~~tV-dWAep----~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~rD--------Y 295 (506)
T KOG0117|consen 235 L-----WGNAITV-DWAEP----EEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKPRD--------Y 295 (506)
T ss_pred e-----cCCccee-eccCc----ccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecccc--------e
Confidence 1 1111111 13211 111111 1122377999999999999999999999 999999999977 8
Q ss_pred EEEEecCHHHHHHHHHh
Q psy11409 207 GRVAFASQASYIAAISA 223 (320)
Q Consensus 207 gfVtF~~~esa~kAi~~ 223 (320)
|||-|.++++|.+|++.
T Consensus 296 aFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 296 AFVHFAEREDAVKAMKE 312 (506)
T ss_pred eEEeecchHHHHHHHHH
Confidence 99999999999999875
No 31
>KOG0149|consensus
Probab=99.69 E-value=4.4e-17 Score=147.94 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=68.9
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccc
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEID 234 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~ 234 (320)
+|||||||+|.++.|+|+++|++ ||+|+++.|++|+.|+++||+|||||.+.++|.+|++...-.|++++.+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 78999999999999999999999 9999999999999999999999999999999999999988888887654
No 32
>KOG0110|consensus
Probab=99.64 E-value=1.3e-15 Score=155.13 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=119.8
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEe-cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc---CCCceEEEecC
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVD-WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV---DEDKCYLCVSS 130 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~-~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~---~~~~~~vkis~ 130 (320)
+|||-||+|++|.++|...|+..|.|..+ ++.+....+.-.|.|||||.|.++++|++|+++.+. ++..++++++-
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999954 444433222345789999999999999999999763 35667777763
Q ss_pred CCccCCC-ccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 131 PTIKDKP-VQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 131 ~~~~~K~-vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
.++ .++.+ .........+|.|.|||+..|-.+++++|.. ||.|.+|+|+.-...+-++|||||
T Consensus 597 ----~k~~~~~gK-----------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK~~k~a~rGF~Fv 660 (725)
T KOG0110|consen 597 ----NKPASTVGK-----------KKSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKKIGKGAHRGFGFV 660 (725)
T ss_pred ----Ccccccccc-----------ccccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchhhcchhhccceee
Confidence 111 11110 0001112368999999999999999999998 999999999987667778999999
Q ss_pred EecCHHHHHHHHHh
Q psy11409 210 AFASQASYIAAISA 223 (320)
Q Consensus 210 tF~~~esa~kAi~~ 223 (320)
+|.+...|.+|+.+
T Consensus 661 ~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 661 DFLTPREAKNAFDA 674 (725)
T ss_pred eccCcHHHHHHHHh
Confidence 99999999999854
No 33
>KOG0105|consensus
Probab=99.64 E-value=3.7e-15 Score=131.45 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=113.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
.+.+|||||||.||.|.+|.++|.+||.|..+- .| +...+-.||||.|++..+|+.||...... -++..+.+.-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ie-LK----~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIE-LK----NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEE-ec----cCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 467999999999999999999999999998531 22 22345689999999999999999876654 2555555543
Q ss_pred CCccCCCccccccccCCcccccCC-------CC----CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCC
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDA-------SM----PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPE 199 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~-------~~----~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~ 199 (320)
++-- + +..-...+|.... .. ......+|.|.+||.+-+++||+++|.+ -|.|+++.+.+|
T Consensus 80 prgg-r-----~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~rD-- 150 (241)
T KOG0105|consen 80 PRGG-R-----SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQRD-- 150 (241)
T ss_pred ccCC-C-----cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeecc--
Confidence 2210 0 1111111121100 01 1122368999999999999999999999 999999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhc
Q psy11409 200 LKYPKGAGRVAFASQASYIAAISAR 224 (320)
Q Consensus 200 tg~pkGfgfVtF~~~esa~kAi~~~ 224 (320)
|.|.|.|...|+++-||...
T Consensus 151 -----g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 151 -----GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred -----cceeeeeeehhhHHHHHHhh
Confidence 68999999999999999753
No 34
>KOG0144|consensus
Probab=99.61 E-value=2.3e-15 Score=146.40 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.+||++||.+.-+.||...|.. ||.|.++++-.|+-|+.+|-||||+|++..++..||..
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~p-fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~a 485 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQP-FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISA 485 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhcc-ccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHH
Confidence 4588999999999999999999999 99999999999999999999999999999999999875
No 35
>KOG0148|consensus
Probab=99.60 E-value=1.9e-15 Score=139.76 Aligned_cols=119 Identities=20% Similarity=0.231 Sum_probs=93.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
..++||||||..++||+-|..+|++-|+|+.+.+ +|+ | + +.+-++. |
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~-----------------i~~-e--~-~v~wa~~------------p 51 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKV-----------------IFD-E--L-KVNWATA------------P 51 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhcccccccee-----------------ehh-h--h-ccccccC------------c
Confidence 3579999999999999999999999999986433 232 0 0 0010000 1
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
.-|.+ ......--||||-|...++.|+|++.|.+ ||+|.+++|++|..|+++||+|||.|
T Consensus 52 -----~nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf 111 (321)
T KOG0148|consen 52 -----GNQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSF 111 (321)
T ss_pred -----ccCCC--------------CccccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEec
Confidence 01111 11123567999999999999999999999 99999999999999999999999999
Q ss_pred cCHHHHHHHHHh
Q psy11409 212 ASQASYIAAISA 223 (320)
Q Consensus 212 ~~~esa~kAi~~ 223 (320)
-++++|++||..
T Consensus 112 ~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 112 PNKEDAENAIQQ 123 (321)
T ss_pred cchHHHHHHHHH
Confidence 999999999975
No 36
>KOG0149|consensus
Probab=99.59 E-value=1.7e-15 Score=137.59 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=58.9
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDE 121 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~ 121 (320)
.|||||||+|+++.++|+++|++||+|++..++.| +++|||||||||+|.|.+++.+|.+.-+...
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd--~~t~rskGyGfVTf~d~~aa~rAc~dp~piI 78 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD--KNTGRSKGYGFVTFRDAEAATRACKDPNPII 78 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEec--cCCccccceeeEEeecHHHHHHHhcCCCCcc
Confidence 49999999999999999999999999997666655 4789999999999999999999998776643
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=7.5e-15 Score=126.23 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
...++|||+|||+.+|+++|+++|++ ||.|.++.|++|++|+.+||||||+|.+.++|.+||+. .-..|.+ ++|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 34679999999999999999999999 99999999999999999999999999999999999975 2234443 456
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
+|+..
T Consensus 107 ~V~~a 111 (144)
T PLN03134 107 RVNPA 111 (144)
T ss_pred EEEeC
Confidence 66555
No 38
>KOG0146|consensus
Probab=99.57 E-value=4.7e-14 Score=130.50 Aligned_cols=189 Identities=19% Similarity=0.172 Sum_probs=134.7
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCC------
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDE------ 121 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~------ 121 (320)
.....++|||||=|...-+||+++.+|..||+|.++.+.+. ..|.|||++||.|.+..+++.||+..+...
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg---~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG---PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC---CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 33456789999999999999999999999999998888774 358999999999999999999999876531
Q ss_pred CceEEEecCC-------Ccc----------CC------------------------------------------------
Q psy11409 122 DKCYLCVSSP-------TIK----------DK------------------------------------------------ 136 (320)
Q Consensus 122 ~~~~vkis~~-------~~~----------~K------------------------------------------------ 136 (320)
..+-||...- +|. +-
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 1233443210 000 00
Q ss_pred ------------------------Ccccccccc-C----------------Cc-------cccc------C---------
Q psy11409 137 ------------------------PVQIRPWKL-T----------------DA-------DFVL------D--------- 153 (320)
Q Consensus 137 ------------------------~vqvrPw~~-~----------------d~-------~y~~------~--------- 153 (320)
.++-.|.-+ . +. .|.. +
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence 000000000 0 00 0000 0
Q ss_pred ------------------CC--------C-CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE
Q psy11409 154 ------------------AS--------M-PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA 206 (320)
Q Consensus 154 ------------------~~--------~-~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf 206 (320)
+. + ......+|||-.||.+.++.||.+.|-. ||.|+++++-.|+-|+.+|-|
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccccce
Confidence 00 0 1234579999999999999999999999 999999999999999999999
Q ss_pred EEEEecCHHHHHHHHHhcc-cccccCccceEEEeccc
Q psy11409 207 GRVAFASQASYIAAISARF-VQLQHGEIDKRVEVKPY 242 (320)
Q Consensus 207 gfVtF~~~esa~kAi~~~~-~~i~~~~~~k~v~ikpy 242 (320)
|||.|+|..|+..||.+-. .+|..+ .-||++|.-
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMK--RLKVQLKRP 364 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMK--RLKVQLKRP 364 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhh--hhhhhhcCc
Confidence 9999999999999997622 344332 235665543
No 39
>KOG4211|consensus
Probab=99.54 E-value=1.1e-13 Score=136.52 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=112.1
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCCcc
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIK 134 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~~~ 134 (320)
-|=+.||||+.|+++|+++|+-++-=..+++ ..+|+..|=|||+|+++++|++||+.....++..||.|=. ..
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~-----r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~--~~ 84 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCGIENLEIP-----RRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT--AG 84 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCceeEEEEe-----ccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc--cC
Confidence 4557999999999999999997764333333 2358999999999999999999998876667778887632 11
Q ss_pred CCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeE-EEEecCCCCCCcceEEEEEecC
Q psy11409 135 DKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY-AGIDTDPELKYPKGAGRVAFAS 213 (320)
Q Consensus 135 ~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~-v~I~~D~~tg~pkGfgfVtF~~ 213 (320)
.+++ +|...-. ......+...|=..|||+.+|++||.++|+- ---|.. +.++.|+ .+++.|-|||.|++
T Consensus 85 ~~e~---d~~~~~~-----g~~s~~~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~gi~l~~d~-rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 85 GAEA---DWVMRPG-----GPNSSANDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPDGILLPMDQ-RGRPTGEAFVQFES 154 (510)
T ss_pred Cccc---cccccCC-----CCCCCCCCceEEecCCCccCcHHHHHHHhcC-CcccccceeeeccC-CCCcccceEEEecC
Confidence 2222 3332111 0011124567888999999999999999997 333333 4456775 78899999999999
Q ss_pred HHHHHHHHHhc
Q psy11409 214 QASYIAAISAR 224 (320)
Q Consensus 214 ~esa~kAi~~~ 224 (320)
.+++++|+...
T Consensus 155 qe~ae~Al~rh 165 (510)
T KOG4211|consen 155 QESAEIALGRH 165 (510)
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.51 E-value=9.5e-14 Score=119.42 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=65.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc-CCCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV-DEDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~-~~~~~~vki 128 (320)
...+.+|||+|||+++||++|+++|++||+|..+.+.++. .++++||||||+|+++++|++||+..+. ..++..|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~--~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR--ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC--CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4567899999999999999999999999999976666553 4789999999999999999999987653 344555655
Q ss_pred c
Q psy11409 129 S 129 (320)
Q Consensus 129 s 129 (320)
+
T Consensus 109 ~ 109 (144)
T PLN03134 109 N 109 (144)
T ss_pred E
Confidence 4
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=4.4e-13 Score=119.41 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=114.9
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSP 131 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~ 131 (320)
..+|||||||+++|+++|+++|++||.|.......+. .+++++|||||.|.+++++..|+...++. ..+..+.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~--~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR--ETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc--ccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 5899999999999999999999999999755444442 46899999999999999999999987742 22222333211
Q ss_pred CccCCCccccccccCCcc----cccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEE
Q psy11409 132 TIKDKPVQIRPWKLTDAD----FVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAG 207 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~----y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfg 207 (320)
.......+..+-. .... ..............+++++++..++..++...|.. +|.+..+.+........+.++.
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (306)
T COG0724 193 QPASQPRSELSNN-LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRS 270 (306)
T ss_pred ccccccccccccc-cchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCccccccc
Confidence 0000000000000 0000 01111233445688999999999999999999998 9999999998887666677777
Q ss_pred EEEecCHHHHHHHHH
Q psy11409 208 RVAFASQASYIAAIS 222 (320)
Q Consensus 208 fVtF~~~esa~kAi~ 222 (320)
++.+........+..
T Consensus 271 ~~~~~~~~~~~~~~~ 285 (306)
T COG0724 271 FVGNEASKDALESNS 285 (306)
T ss_pred ccchhHHHhhhhhhc
Confidence 766666665555544
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=1.5e-13 Score=101.06 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=56.1
Q ss_pred EEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 164 VFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 164 VFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
|||+|||.++|+++|+++|++ ||.|..+.+..+ .++.++|+|||+|.+.++|++|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHH
Confidence 799999999999999999999 999999999999 6999999999999999999999984
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=3.2e-13 Score=131.51 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...++|||+|||+++|+++|+++|++ ||.|++|+|+.|+.|+++||||||+|.++++|.+||+.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999974
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=4.1e-13 Score=98.74 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=54.3
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 56 QFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 56 vFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
|||+|||+++|+++|+++|++||.|.......+ .+++++|||||.|+++++|++|++..++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN---SSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE---TTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc---ccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 799999999999999999999999986666554 3578999999999999999999997654
No 45
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=1.3e-12 Score=97.20 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=56.9
Q ss_pred EEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc-cccc
Q psy11409 164 VFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF-VQLQ 229 (320)
Q Consensus 164 VFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~-~~i~ 229 (320)
|||+|||+.+|+++|.++|+. ||.|..+.+..+++ +.++|+|||+|.+.++|.+|++... ..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999 99999999999986 9999999999999999999998744 4444
No 46
>KOG0113|consensus
Probab=99.32 E-value=3.8e-12 Score=119.27 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=70.5
Q ss_pred cCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-cccccc
Q psy11409 152 LDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-FVQLQH 230 (320)
Q Consensus 152 ~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-~~~i~~ 230 (320)
.++....||-+||||+-|+.+++|.+|+..|+. ||.|..++|+.|+.||+|||||||.|.++.++.+|.+.. -+.|++
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 344556688899999999999999999999999 999999999999999999999999999999999998753 345555
Q ss_pred Ccc
Q psy11409 231 GEI 233 (320)
Q Consensus 231 ~~~ 233 (320)
..+
T Consensus 171 rri 173 (335)
T KOG0113|consen 171 RRI 173 (335)
T ss_pred cEE
Confidence 443
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=6.2e-12 Score=117.20 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=62.6
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
.++|||||||+.+|+++|+++|+. ||.|++|.|+.|++ ++|||||+|.+++++.+||......|. .+.|+|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~----gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIV----DQSVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeC----CceEEEE
Confidence 479999999999999999999999 99999999999974 579999999999999999963333332 4566666
Q ss_pred cc
Q psy11409 241 PY 242 (320)
Q Consensus 241 py 242 (320)
+.
T Consensus 76 ~a 77 (260)
T PLN03120 76 PA 77 (260)
T ss_pred ec
Confidence 65
No 48
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=7.9e-12 Score=92.97 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=51.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 56 QFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 56 vFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
|||+|||+++|+++|+++|+.||.|......+.. . ++++|+|||.|.++++|++|++.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~--~-~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK--D-GQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST--T-SSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee--c-cccCCEEEEEeCCHHHHHHHHHHCC
Confidence 7999999999999999999999999865554432 2 7899999999999999999999876
No 49
>KOG4206|consensus
Probab=99.30 E-value=8.8e-11 Score=106.51 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=112.1
Q ss_pred cEEEcCCCCCCCHHHHHH----HhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEE
Q psy11409 55 PQFPLQGTPHYDHEEITA----SFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLC 127 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~----~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vk 127 (320)
+|||.||+..+..++|+. +|++||.|.++...+ +.+.||=|||+|.+.+++-.|+.+.++. +..+.+.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k-----t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK-----TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC-----CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 999999999999999998 999999999765543 4689999999999999999999987663 1111111
Q ss_pred ecC-----------------CCccCCCccccc-cccCCccccc-------CC--CCCCCCCCeEEEcCCCccchHHHHHH
Q psy11409 128 VSS-----------------PTIKDKPVQIRP-WKLTDADFVL-------DA--SMPLDPRKTVFVGGVPRPLKALELAM 180 (320)
Q Consensus 128 is~-----------------~~~~~K~vqvrP-w~~~d~~y~~-------~~--~~~~~~~~tVFVGnLp~~~TeedL~~ 180 (320)
.+. ++...+...-++ -...++.+.. .+ .+...++..+|+-|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 110 000000000000 0000000000 00 12245678999999999999999999
Q ss_pred HHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc
Q psy11409 181 IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR 224 (320)
Q Consensus 181 ~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~ 224 (320)
+|++ |..-..|++.--. +|.|||+|.++..+..|....
T Consensus 166 lf~q-f~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~l 203 (221)
T KOG4206|consen 166 LFEQ-FPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQAL 203 (221)
T ss_pred HHhh-CcccceeEeccCC-----CceeEEecchhhhhHHHhhhh
Confidence 9999 9999999998876 799999999998877776653
No 50
>KOG4205|consensus
Probab=99.25 E-value=4.4e-12 Score=121.52 Aligned_cols=81 Identities=26% Similarity=0.333 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEe
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEV 239 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~i 239 (320)
...++|||+|+|++|+|.|+++|++ ||+|..+.|+.|+.|+++|||+||+|++.+.+.+++..+-|+|++. .|++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr----~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGR----SVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCc----cccc
Confidence 3578999999999999999999999 9999999999999999999999999999999999999998888754 6677
Q ss_pred cccccc
Q psy11409 240 KPYVLD 245 (320)
Q Consensus 240 kpy~~~ 245 (320)
|+.+++
T Consensus 80 k~av~r 85 (311)
T KOG4205|consen 80 KRAVSR 85 (311)
T ss_pred eeccCc
Confidence 777655
No 51
>KOG0125|consensus
Probab=99.24 E-value=9e-12 Score=118.08 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHH--------HHhcccccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAA--------ISARFVQLQ 229 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kA--------i~~~~~~i~ 229 (320)
.+..++|.|.|||+...|.||+..|++ ||+|.+|+|+.. ..-+||||||||++.+++++| |+.|-|+++
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 345589999999999999999999999 999999999998 356899999999999999999 344555554
Q ss_pred cC--cc-ceEEEeccc
Q psy11409 230 HG--EI-DKRVEVKPY 242 (320)
Q Consensus 230 ~~--~~-~k~v~ikpy 242 (320)
.. ++ +||.++-||
T Consensus 170 ~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 170 NATARVHNKKKKVLPY 185 (376)
T ss_pred ccchhhccCCcccCCC
Confidence 22 22 456677777
No 52
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=1.8e-11 Score=126.42 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=60.8
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
....+|||||||+.+|+++|+++|++ ||.|.++.|+.|+.|+++||||||+|.+.++|.+||+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh
Confidence 34579999999999999999999999 99999999999999999999999999999999999974
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=113.47 Aligned_cols=71 Identities=8% Similarity=-0.018 Sum_probs=57.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
.++|||||||+++||++|+++|+.||+|..+++.++. .++|||||+|+++++++.||.......++..|+|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-----~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-----ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-----CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEE
Confidence 5699999999999999999999999999976665542 3679999999999999999975444444444444
No 54
>KOG4212|consensus
Probab=99.23 E-value=1.8e-10 Score=112.79 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=116.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhcc-CCCeEE-ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-C--CceEEE
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRR-FGPLVV-DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-E--DKCYLC 127 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~-FG~V~v-~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~--~~~~vk 127 (320)
.+.+||.|||+|+.+++|+++|++ -|+|+- +.... ..|++||+|.|+|+++|+|+||++..+.. . +.+.+|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D----~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD----ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc----cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 456999999999999999999975 899984 34433 35899999999999999999999987653 2 333333
Q ss_pred ecCCCccCC----------------Ccc----------------ccccccCCc--------------cccc---------
Q psy11409 128 VSSPTIKDK----------------PVQ----------------IRPWKLTDA--------------DFVL--------- 152 (320)
Q Consensus 128 is~~~~~~K----------------~vq----------------vrPw~~~d~--------------~y~~--------- 152 (320)
-....-+.+ .+| +|-....|. +|..
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 221100000 000 010001110 0100
Q ss_pred ------CCCC-CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 153 ------DASM-PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 153 ------~~~~-~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+... ..+-..+|||+||...+.+..|.+.|.= -|+|+.+.+-+|| .+.++||+.+.|++.-.+..||+.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHh
Confidence 0001 1122468999999999999999999996 9999999999996 679999999999998888888875
No 55
>smart00362 RRM_2 RNA recognition motif.
Probab=99.23 E-value=5.1e-11 Score=86.02 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=55.3
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
||||+|||..+++++|+++|++ ||.|.++.+..++ +.++|+|||+|.+.++|.+|++.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHH
Confidence 6999999999999999999998 9999999999996 88999999999999999999875
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=4e-11 Score=110.47 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCcc-ceEEEe
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEI-DKRVEV 239 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~-~k~v~i 239 (320)
..||||+||++.+|+++|+++|+. ||.|.+|+|+.|.++ +|||||+|.+++++..|+. +.+..+ ...|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-----LnGa~l~d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-----LSGATIVDQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-----cCCCeeCCceEEE
Confidence 479999999999999999999999 999999999999544 5899999999999999985 444443 457788
Q ss_pred ccc
Q psy11409 240 KPY 242 (320)
Q Consensus 240 kpy 242 (320)
-|+
T Consensus 76 t~~ 78 (243)
T PLN03121 76 TRW 78 (243)
T ss_pred EeC
Confidence 876
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=4.1e-11 Score=106.69 Aligned_cols=64 Identities=27% Similarity=0.357 Sum_probs=61.4
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
..+|||||||..+|+++|.++|.+ ||.|..+.|..|+.++.++|+|||.|.+.+++.+|++.-.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 589999999999999999999999 9999999999999999999999999999999999998644
No 58
>KOG0122|consensus
Probab=99.20 E-value=2.9e-11 Score=110.80 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...+|=|.|||.++++++|.++|.. ||.|..+.|.+|++||.+||||||+|.++++|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHH
Confidence 4578999999999999999999999 99999999999999999999999999999999999984
No 59
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=7.3e-11 Score=84.78 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=55.1
Q ss_pred EcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc
Q psy11409 166 VGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR 224 (320)
Q Consensus 166 VGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~ 224 (320)
|+|||..+++++|+++|++ ||.|..+.|..++.++.++|+|||+|.+.++|.+|++.-
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~ 58 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL 58 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc
Confidence 6899999999999999999 999999999999889999999999999999999998753
No 60
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.17 E-value=5.7e-11 Score=109.43 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=54.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
+.+|||+||++++||++|+++|+.||+|..+.+.++ +..+|||||+|+++++++.||......
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-----~et~gfAfVtF~d~~aaetAllLnGa~ 67 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-----GEYACTAYVTFKDAYALETAVLLSGAT 67 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CCcceEEEEEECCHHHHHHHHhcCCCe
Confidence 579999999999999999999999999997666554 356799999999999999999654443
No 61
>KOG0106|consensus
Probab=99.17 E-value=5.8e-11 Score=108.13 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=107.7
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC--CCceEEEecCC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD--EDKCYLCVSSP 131 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~--~~~~~vkis~~ 131 (320)
.++|||+||+.+.+++|..+|..||.+.++ .++ .||+||.|++..+|+.|+...+.. .+.. +-+.-+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~-~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~~e~-~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA-DMK---------NGFGFVEFEDPRDADDAVHDLDGKELCGER-LVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc-eee---------cccceeccCchhhhhcccchhcCceeccee-eeeecc
Confidence 379999999999999999999999999853 222 389999999999999999776553 1221 212111
Q ss_pred CccCCCccccccccCCccc-ccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 132 TIKDKPVQIRPWKLTDADF-VLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y-~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
+... .-+-.|.- .+..- ......+.-....++|-+++..+.+.+|.++|.+ +|.+.++.+ .+++|||.
T Consensus 71 r~~~-~~~g~~~~-g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~--------~~~~~~v~ 139 (216)
T KOG0106|consen 71 RGKR-RGRGRPRG-GDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA--------RRNFAFVE 139 (216)
T ss_pred cccc-cccCCCCC-CCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh--------hcccccee
Confidence 1100 00000000 00000 0001112233467999999999999999999999 999966654 47899999
Q ss_pred ecCHHHHHHHHHhcccccccCcc-ceEEEe
Q psy11409 211 FASQASYIAAISARFVQLQHGEI-DKRVEV 239 (320)
Q Consensus 211 F~~~esa~kAi~~~~~~i~~~~~-~k~v~i 239 (320)
|.+++++.+||+. +.+.++ ..+|.+
T Consensus 140 Fs~~~da~ra~~~----l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 140 FSEQEDAKRALEK----LDGKKLNGRRISV 165 (216)
T ss_pred ehhhhhhhhcchh----ccchhhcCceeee
Confidence 9999999999985 333333 445555
No 62
>KOG0126|consensus
Probab=99.15 E-value=4e-12 Score=112.06 Aligned_cols=62 Identities=21% Similarity=0.410 Sum_probs=58.8
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+.=|||||||+++||.||--+|++ ||.|+.|-+++|++||++|||||..|.+..|-.-||..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN 96 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDN 96 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEec
Confidence 467999999999999999999999 99999999999999999999999999999998888764
No 63
>KOG0113|consensus
Probab=99.14 E-value=1.5e-10 Score=108.70 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=61.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
..|=++|||+-|+.+++|.+|+..|+.||+|+-..++++. .||+|+|||||+|+++.++++|.....+.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~--vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK--VTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec--ccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3566799999999999999999999999999977777764 47999999999999999999999877653
No 64
>smart00362 RRM_2 RNA recognition motif.
Probab=99.14 E-value=2.5e-10 Score=82.33 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=52.3
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+|||+|||+++++++|+++|++||+|.......+. +.++|+|||.|.+.+++++|++..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT----GKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CCCCceEEEEeCCHHHHHHHHHHhC
Confidence 58999999999999999999999999865554432 6789999999999999999998765
No 65
>KOG0107|consensus
Probab=99.12 E-value=1.4e-10 Score=101.68 Aligned_cols=70 Identities=19% Similarity=0.366 Sum_probs=59.3
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEec
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCVS 129 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vkis 129 (320)
..|||||||+.++++.+|...|..||+|..+|+.+ .+-|||||+|++..+|+.|+...... +-.+.|.++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-------cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 56999999999999999999999999999999966 36699999999999999999877653 123445554
No 66
>KOG0107|consensus
Probab=99.11 E-value=5.8e-10 Score=97.90 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=62.8
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCcc---ceEE
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEI---DKRV 237 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~---~k~v 237 (320)
..+||||||+..+|+.||..+|.. ||.|-.|=|...| -|||||+|++..+|+.|+.. |++.++ ..+|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~----LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRY----LDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeecC-----CCceEEeccCcccHHHHHhh----cCCccccCceEEE
Confidence 579999999999999999999998 9999999998865 89999999999999999863 566654 3566
Q ss_pred Eecccccc
Q psy11409 238 EVKPYVLD 245 (320)
Q Consensus 238 ~ikpy~~~ 245 (320)
|+----+.
T Consensus 80 E~S~G~~r 87 (195)
T KOG0107|consen 80 ELSTGRPR 87 (195)
T ss_pred EeecCCcc
Confidence 66544444
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.11 E-value=1.6e-10 Score=114.52 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCH--HHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQ--ASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~--esa~kAi~~ 223 (320)
...+||||||++.+|++||..+|++ ||.|..|.|+ ++|| ||||||+|.+. +++.+||+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISa 69 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFST 69 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHH
Confidence 3579999999999999999999999 9999999999 4577 99999999987 789999974
No 68
>KOG0110|consensus
Probab=99.10 E-value=7.9e-10 Score=113.45 Aligned_cols=170 Identities=20% Similarity=0.202 Sum_probs=111.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEe-cccccCCCCCCCCcc-eEEEEeCCHHHHHHHHHhCccCC---CceEEE
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVD-WPHKAESKSYFPPKG-YAFLLFQDESSVQQLIDACIVDE---DKCYLC 127 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~-~p~k~~~~~tg~skG-ygFV~F~~eesv~kaL~~~~~~~---~~~~vk 127 (320)
...|+|+|||..+..++|.++|..||+|..+ .| . -| -++|.|.+..++++|+....... ..+|+.
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~--------~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P--------GGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecC--c--------ccceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 4689999999999999999999999999843 33 1 12 38999999999999998765421 122221
Q ss_pred ecC-------C-----------CccCCCcccccc----ccCCcccccCCC-----CCCCCCCeEEEcCCCccchHHHHHH
Q psy11409 128 VSS-------P-----------TIKDKPVQIRPW----KLTDADFVLDAS-----MPLDPRKTVFVGGVPRPLKALELAM 180 (320)
Q Consensus 128 is~-------~-----------~~~~K~vqvrPw----~~~d~~y~~~~~-----~~~~~~~tVFVGnLp~~~TeedL~~ 180 (320)
-.. + .++.++++..+- +..|.+.....+ ...+...++||.||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 110 0 001111110000 001111000000 0111223499999999999999999
Q ss_pred HHhhhCCCeeEEEEecCCCCC---CcceEEEEEecCHHHHHHHHHhcc-cccccCcc
Q psy11409 181 IMDRLYGGVCYAGIDTDPELK---YPKGAGRVAFASQASYIAAISARF-VQLQHGEI 233 (320)
Q Consensus 181 ~F~~~fG~V~~v~I~~D~~tg---~pkGfgfVtF~~~esa~kAi~~~~-~~i~~~~~ 233 (320)
.|.. .|.|.++.|..-++-. .+.|||||.|.+.++|.+|+..-. ..|++..+
T Consensus 535 ~F~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 535 LFSK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred HHHh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 9998 9999999999664221 245999999999999999998744 44554433
No 69
>KOG0125|consensus
Probab=99.10 E-value=2e-10 Score=109.10 Aligned_cols=90 Identities=11% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE-ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCce
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV-DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKC 124 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v-~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~ 124 (320)
.++-.++|.|.|||+.-.|-||+..|++||.|.+ +++..+ .-|||||||+|++.+++++|=++.++. ++++
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-----RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-----RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-----CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3455689999999999999999999999999995 444433 359999999999999999998887763 5677
Q ss_pred EEEecCCCccCCCcccccc
Q psy11409 125 YLCVSSPTIKDKPVQIRPW 143 (320)
Q Consensus 125 ~vkis~~~~~~K~vqvrPw 143 (320)
.|.....++..|+..+-|.
T Consensus 167 EVn~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 167 EVNNATARVHNKKKKVLPY 185 (376)
T ss_pred EEeccchhhccCCcccCCC
Confidence 7777666666666666553
No 70
>smart00360 RRM RNA recognition motif.
Probab=99.09 E-value=4e-10 Score=80.87 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=51.3
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 58 PLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 58 VGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
|+|||+++++++|+++|++||+|..+.+.... .+++++|||||.|.+.++|++|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~--~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK--DTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC--CCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 68999999999999999999999866555432 357899999999999999999998765
No 71
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.07 E-value=7.3e-10 Score=80.30 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=55.6
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+|+|+|||..+++++|.++|+. ||.|..+.+..++.+ .++|+|||+|.+.+++..|++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~ 59 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEA 59 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999 999999999999755 8899999999999999999975
No 72
>KOG4210|consensus
Probab=99.05 E-value=3.5e-10 Score=107.55 Aligned_cols=179 Identities=19% Similarity=0.116 Sum_probs=127.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEec
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVS 129 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis 129 (320)
....+.|+|++.+++.+.+...+|...|.+......... ...+++||+++.|...+.+..+|+..... ....-+..+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~--~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE--DSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc--cccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 346799999999999999999999999988754443322 35789999999999999999999875432 111111111
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEE-EcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVF-VGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGR 208 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVF-VGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgf 208 (320)
..+..+ .++-.. .......+..++| |++|+..+|+++|+.+|.. +|.|..+++++++.++.++|||+
T Consensus 164 l~~~~~----~~~~n~-------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~ 231 (285)
T KOG4210|consen 164 LNTRRG----LRPKNK-------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAY 231 (285)
T ss_pred cccccc----ccccch-------hcccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhh
Confidence 110000 000000 0012233456777 9999999999999999998 99999999999999999999999
Q ss_pred EEecCHHHHHHHHHhcccccccCccceEEEecccccc
Q psy11409 209 VAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLD 245 (320)
Q Consensus 209 VtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~ 245 (320)
|.|.+.....+|+...-..+ .....+++-.++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 232 VDFSAGNSKKLALNDQTRSI--GGRPLRLEEDEPRPK 266 (285)
T ss_pred hhhhhchhHHHHhhcccCcc--cCcccccccCCCCcc
Confidence 99999999999988422222 233455666666444
No 73
>KOG0121|consensus
Probab=99.02 E-value=6.6e-10 Score=93.23 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
.+.|||||||++.+|||+|.++|++ .|.|..|-+-.|+.++.|=||+||.|.+.++|..|+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHH
Confidence 4689999999999999999999998 9999999999999999999999999999999999986
No 74
>KOG0128|consensus
Probab=99.02 E-value=3.9e-11 Score=124.94 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=112.2
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPT 132 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~ 132 (320)
..++||.+|+..+.+.+|...|+.+|.+.++... ...+.++.||+||+.|.+++.+.+||.-..
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~--~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-------------- 730 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV--IHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-------------- 730 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHH--HHhhccccccceeeEeecCCchhhhhhhhh--------------
Confidence 4599999999999999999999999999865443 123568999999999999999999996321
Q ss_pred ccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 133 IKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
+.+ ..+..|||.|+|+.-|.++|+.+++. +|.+.++.+++.+ .|+|||-|||.|.
T Consensus 731 ---~~~--------------------~gK~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r-~gkpkg~a~v~y~ 785 (881)
T KOG0128|consen 731 ---SCF--------------------FGKISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVR-AGKPKGKARVDYN 785 (881)
T ss_pred ---hhh--------------------hhhhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhh-ccccccceeccCC
Confidence 100 12468999999999999999999998 9999999999995 9999999999999
Q ss_pred CHHHHHHHHHhc
Q psy11409 213 SQASYIAAISAR 224 (320)
Q Consensus 213 ~~esa~kAi~~~ 224 (320)
++.++.+++...
T Consensus 786 ~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 786 TEADASRKVASV 797 (881)
T ss_pred Ccchhhhhcccc
Confidence 999999997654
No 75
>KOG0122|consensus
Probab=99.01 E-value=8.6e-10 Score=101.22 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDE 121 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~ 121 (320)
...+|=|-|||.|++|++|+++|.+||.|..+...++. .||.+||||||+|.+.++|.+||+..++.+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK--~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK--ETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcc--ccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 45689999999999999999999999999987777764 689999999999999999999999887653
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=2.4e-09 Score=77.60 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=53.6
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
+|+|+|||+++++++|+++|++||+|....+..+.. +.++|+|||.|.+.++++.|++..+..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~---~~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD---TKSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC---CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999999999998655554332 377999999999999999999876543
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.00 E-value=8.1e-10 Score=109.63 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=54.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCH--HHHHHHHHhCccC
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDE--SSVQQLIDACIVD 120 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~e--esv~kaL~~~~~~ 120 (320)
...-+||||||+|++|+++|++.|++||.|..+-+.+ .+| ||||||.|.++ .+.++||...+.-
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR----ETG--RGFAFVEMssdddaEeeKAISaLNGA 73 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR----TKG--RSFAYIDFSPSSTNSLTKLFSTYNGC 73 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec----ccC--CceEEEEecCCcHHHHHHHHHHhcCC
Confidence 3456999999999999999999999999999554443 346 89999999987 7899999987763
No 78
>KOG0131|consensus
Probab=99.00 E-value=6.5e-10 Score=98.16 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+...|||||||+..+|++-|.++|-+ -|+|+.+.|+.|+.|..++|||||.|.++|+|+-||+-
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcccccceeEEEEechhhhHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999863
No 79
>KOG0126|consensus
Probab=99.00 E-value=5.4e-11 Score=104.97 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=65.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki 128 (320)
...+.-|||||||++.||.+|...|++||+|+.+..++|. .||+|+||||+-|+|+.|---|+...++. ..+..|+|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk--~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK--KTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC--CCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 4567799999999999999999999999999988888875 58999999999999999988888766653 23444444
Q ss_pred c
Q psy11409 129 S 129 (320)
Q Consensus 129 s 129 (320)
+
T Consensus 110 D 110 (219)
T KOG0126|consen 110 D 110 (219)
T ss_pred e
Confidence 3
No 80
>KOG0147|consensus
Probab=98.98 E-value=4.8e-09 Score=105.25 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=60.5
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEec
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVS 129 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis 129 (320)
+++||||.+++||++|+.+|+.||.|..+-..++. .+|++||||||+|.+.+++++|+...+.. .-+..++|+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~--~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~ 353 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS--ETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVS 353 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccc--ccccccCcceEEEecHHHHHHHHHHhccceecCceEEEE
Confidence 49999999999999999999999999965555543 47999999999999999999998877663 334445554
No 81
>KOG1457|consensus
Probab=98.98 E-value=5.8e-09 Score=94.86 Aligned_cols=165 Identities=17% Similarity=0.080 Sum_probs=101.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC------CCceE
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD------EDKCY 125 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~------~~~~~ 125 (320)
.-++|||.|||.|+...+|..+|+.|---+.....-.. +.....+-+||++|.+..+|.+|+++.++. .-.+.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts-k~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS-KGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc-CCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35799999999999999999999998555432221111 112245689999999999999999998763 12233
Q ss_pred EEecC--CCc-cCCCcc----------------cc--cccc----------------CCc-----ccccC---------C
Q psy11409 126 LCVSS--PTI-KDKPVQ----------------IR--PWKL----------------TDA-----DFVLD---------A 154 (320)
Q Consensus 126 vkis~--~~~-~~K~vq----------------vr--Pw~~----------------~d~-----~y~~~---------~ 154 (320)
|.+.. .++ +.|..- .+ +... +++ .+... +
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 33321 111 111110 00 0000 000 00000 0
Q ss_pred ---------CCC---CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 155 ---------SMP---LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 155 ---------~~~---~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
.+. -..-.|+||.||..++||++|+++|+. |-.-.-.+|-.- . ..-.|||.|++-+.|..|+.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecC--C--CcceEeecHHHHHHHHHHHH
Confidence 000 112368999999999999999999998 988766666432 2 23467888888777777764
No 82
>KOG0108|consensus
Probab=98.98 E-value=1.1e-09 Score=109.37 Aligned_cols=61 Identities=30% Similarity=0.349 Sum_probs=59.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..|||||+|+++++++|.++|+. .|.|.++++..|++||++|||||+.|.+.+.+.+|++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~ 79 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRN 79 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHh
Confidence 78999999999999999999999 99999999999999999999999999999999999985
No 83
>KOG4207|consensus
Probab=98.96 E-value=1.1e-09 Score=98.53 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-ccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-FVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-~~~i~~~~~~k~v 237 (320)
+.-.+|-|-||-+-+|.++|+.+|++ ||.|.+|.|+.|+-|+.++|||||-|.+..+|++|+++- ...|++. +.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR--elrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR--ELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc--eeee
Confidence 33478999999999999999999999 999999999999999999999999999999999998762 2334433 3467
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
|+-.|-
T Consensus 88 q~aryg 93 (256)
T KOG4207|consen 88 QMARYG 93 (256)
T ss_pred hhhhcC
Confidence 777664
No 84
>KOG1365|consensus
Probab=98.93 E-value=4e-09 Score=102.02 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=121.2
Q ss_pred EEEcCCCCCCCHHHHHHHhccC-----CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecC
Q psy11409 56 QFPLQGTPHYDHEEITASFRRF-----GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSS 130 (320)
Q Consensus 56 vFVGgLp~dvtEe~L~~~Fs~F-----G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~ 130 (320)
|=..|||+|.|+.++.++|.+- |...+.++.+ ..|+..|=|||.|..|+.|+.||....+..|+.||.+=.
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r----pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR----PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC----CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4458999999999999999742 3333444444 358999999999999999999999887777887776521
Q ss_pred CCc-cCCCccc----cccccCCcccccC--C---CCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCC-eeE--EEEecC
Q psy11409 131 PTI-KDKPVQI----RPWKLTDADFVLD--A---SMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGG-VCY--AGIDTD 197 (320)
Q Consensus 131 ~~~-~~K~vqv----rPw~~~d~~y~~~--~---~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~-V~~--v~I~~D 197 (320)
.+. +-.+|-. .|........... + -++..++..|=..|||+..|-|||-++|.+ |-. |.. |.+..+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGD-FATDIRFQGVHMVLN 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHH-HhhhcccceeEEEEc
Confidence 111 1111000 0110000000000 0 011222457889999999999999999999 765 666 888888
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEecccccc
Q psy11409 198 PELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLD 245 (320)
Q Consensus 198 ~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~ 245 (320)
..|+|.|=|||.|.+.|++..|.....-++. ..+.||+.|.--+
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m---k~RYiEvfp~S~e 362 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKLM---KSRYIEVFPCSVE 362 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhhc---ccceEEEeeccHH
Confidence 5999999999999999999988654321111 1346677776433
No 85
>KOG0121|consensus
Probab=98.86 E-value=1.8e-09 Score=90.61 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=59.9
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+....+.+||||||++.+|||.|.++|+++|+|..+++.-+ +.+..+-||+||+|-+.++|+.||.-.+.
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLd--r~kktpCGFCFVeyy~~~dA~~Alryisg 100 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLD--RFKKTPCGFCFVEYYSRDDAEDALRYISG 100 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccc--cCCcCccceEEEEEecchhHHHHHHHhcc
Confidence 45567899999999999999999999999999996655544 35678999999999999999999976543
No 86
>KOG0114|consensus
Probab=98.85 E-value=6.3e-09 Score=84.49 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=55.8
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
-++-+||.|||+.+|.|+..++|++ ||.|..++|-.+++| +|.|||.|++..+|.+|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCccCc---CceEEEEehHhhhHHHHHHH
Confidence 3578999999999999999999999 999999999988876 99999999999999999874
No 87
>KOG0111|consensus
Probab=98.84 E-value=1.6e-09 Score=98.29 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+|||||||..++||.-|...|=. ||.|..+.|+.|.+++++||||||+|...|+|..||..
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhc
Confidence 4689999999999999999999999 99999999999999999999999999999999999975
No 88
>KOG0130|consensus
Probab=98.81 E-value=8.4e-09 Score=87.39 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=60.7
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
.--|||.|++..+|++++.+.|.+ ||+|..+.+-.|+.|||-||||.|.|.+.+.|.+||++..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N 135 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN 135 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhcc
Confidence 456999999999999999999999 9999999999999999999999999999999999998744
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=1.4e-08 Score=76.43 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHh----hhCCCeeEEE-EecCCCC--CCcceEEEEEecCHHHHHHHHHh
Q psy11409 175 ALELAMIMD----RLYGGVCYAG-IDTDPEL--KYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 175 eedL~~~F~----~~fG~V~~v~-I~~D~~t--g~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+++|.++|+ + ||.|..+. |..|+.+ +.+||||||+|.+.++|.+|++.
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~ 56 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVD 56 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH
Confidence 688999999 9 99999996 8888777 99999999999999999999974
No 90
>KOG4454|consensus
Probab=98.76 E-value=2.3e-09 Score=97.11 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=103.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPT 132 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~ 132 (320)
.++|||+|+...+||+-|.++|-+-|+|.-+.+-+. ..+..| ||||.|++|-+|.-|++..+...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~---~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~----------- 73 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG---QDQEQK-FAYVFFPNENSVQLAGQLENGDD----------- 73 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC---ccCCCc-eeeeecccccchhhhhhhcccch-----------
Confidence 469999999999999999999999999984333222 235667 99999999999999998765321
Q ss_pred ccCCCccccccccCCcccccCCCCCCCCCCeEEEcC----CCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEE
Q psy11409 133 IKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGG----VPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGR 208 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGn----Lp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgf 208 (320)
....+. ..|++-|+ |...+|++-+...|+. -|.++.++|++|. .|+++-++|
T Consensus 74 l~~~e~----------------------q~~~r~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~~~-d~rnrn~~~ 129 (267)
T KOG4454|consen 74 LEEDEE----------------------QRTLRCGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPTDN-DGRNRNFGF 129 (267)
T ss_pred hccchh----------------------hcccccCCCcchhhhhcchhhheeeecc-cCCCCCccccccc-cCCccCccc
Confidence 111222 35677777 7888999999999999 9999999999996 599999999
Q ss_pred EEecCHHHHHHHHH
Q psy11409 209 VAFASQASYIAAIS 222 (320)
Q Consensus 209 VtF~~~esa~kAi~ 222 (320)
|++.-.-+.=.|+.
T Consensus 130 ~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 130 VTYQRLCAVPFALD 143 (267)
T ss_pred hhhhhhhcCcHHhh
Confidence 99876666555543
No 91
>KOG0111|consensus
Probab=98.72 E-value=1.4e-08 Score=92.20 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE-ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceE
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV-DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCY 125 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v-~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~ 125 (320)
....++||||||.-++||.-|...|-+||.|.+ ..|..- .+.++||||||+|+..|+|.+||...+.. ++-+.
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy---esqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY---ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccch---hcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 345789999999999999999999999999995 455542 46899999999999999999999877653 34444
Q ss_pred EEecC
Q psy11409 126 LCVSS 130 (320)
Q Consensus 126 vkis~ 130 (320)
|.+..
T Consensus 84 VN~Ak 88 (298)
T KOG0111|consen 84 VNLAK 88 (298)
T ss_pred EeecC
Confidence 55543
No 92
>KOG0146|consensus
Probab=98.72 E-value=1.6e-08 Score=94.06 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++++|||-|...-.|||++.+|.. ||.|+++++.+.+ .|-+||+|||.|.+..++..||.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHH
Confidence 4689999999999999999999998 9999999999997 899999999999999999999975
No 93
>KOG0108|consensus
Probab=98.71 E-value=3.6e-08 Score=98.54 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=64.9
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
..|||||+|++++|++|.++|++.|.|.....+.|. .+|++|||||+.|.+++.++.|++..+.. .++..++++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~--~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR--ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc--cCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 799999999999999999999999999976665553 68999999999999999999999998863 4566666653
No 94
>KOG0114|consensus
Probab=98.69 E-value=6.1e-08 Score=78.80 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=53.4
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
+=|||.|||+++|.|+.-++|++||+|.-..+.. +..-+|-|||+|++-.+|++|++.....
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~-----~k~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-----TKETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecC-----ccCcCceEEEEehHhhhHHHHHHHhccc
Confidence 4789999999999999999999999999655543 3457899999999999999999876653
No 95
>KOG4212|consensus
Probab=98.69 E-value=3.4e-08 Score=97.05 Aligned_cols=62 Identities=21% Similarity=0.331 Sum_probs=59.1
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.|||.|||++..+.+|+++|.+.-|+|+||++..| +.+++||+|.|.|+++|+++||++.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~ 105 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEK 105 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHH
Confidence 3569999999999999999999998999999999999 6999999999999999999999986
No 96
>KOG4211|consensus
Probab=98.68 E-value=1.5e-07 Score=93.69 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=113.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEE--ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVV--DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v--~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
+..-|=+.||||.+||++|.++|+--=.|.+ ..++. ..+++.|=|||.|++.++|++||+...+..+..||.|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d----~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD----QRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc----CCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEee
Confidence 4456778999999999999999986544433 12322 24789999999999999999999987777777777663
Q ss_pred CCCc-cCCCc---------cc---------c----------cccc--------------------CC-c-----------
Q psy11409 130 SPTI-KDKPV---------QI---------R----------PWKL--------------------TD-A----------- 148 (320)
Q Consensus 130 ~~~~-~~K~v---------qv---------r----------Pw~~--------------------~d-~----------- 148 (320)
..++ +.+.. +. | +|.. .| .
T Consensus 178 ~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~ 257 (510)
T KOG4211|consen 178 RSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDP 257 (510)
T ss_pred hhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccc
Confidence 1100 00000 00 0 1110 00 0
Q ss_pred ccccC--CC-C-------CCCCC-CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHH
Q psy11409 149 DFVLD--AS-M-------PLDPR-KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASY 217 (320)
Q Consensus 149 ~y~~~--~~-~-------~~~~~-~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa 217 (320)
.|..+ +. + ...+. .-|...+||+..++.++...|+. .....|+|...+ +++..|=|.|.|.+.+++
T Consensus 258 ~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v~i~ig~-dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 258 NYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRVHIEIGP-DGRATGEADVEFATGEDA 334 (510)
T ss_pred ccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeEEEEeCC-CCccCCcceeecccchhh
Confidence 00000 00 0 01111 34667999999999999999995 566699999995 999999999999999999
Q ss_pred HHHHHh
Q psy11409 218 IAAISA 223 (320)
Q Consensus 218 ~kAi~~ 223 (320)
..|+..
T Consensus 335 v~Amsk 340 (510)
T KOG4211|consen 335 VGAMGK 340 (510)
T ss_pred Hhhhcc
Confidence 999864
No 97
>KOG1190|consensus
Probab=98.62 E-value=6.2e-08 Score=94.57 Aligned_cols=163 Identities=20% Similarity=0.153 Sum_probs=103.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-----CCc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-----EDK 123 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-----~~~ 123 (320)
..++++-|-+++|||+++|++|.+++.+||.|.-....+ |+ -=+||.|.|+++|-..+.-.... +..
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk------Gk--nQAflem~d~~sAvtmv~~y~~~~p~lr~~~ 95 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK------GK--NQAFLEMADEESAVTMVNYYTSVTPVLRGQP 95 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeec------cc--hhhhhhhcchhhhhheeecccccCccccCcc
Confidence 456899999999999999999999999999998533322 23 27999999999887754332211 234
Q ss_pred eEEEecCCCc---cCCCccccc--------------cccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhC
Q psy11409 124 CYLCVSSPTI---KDKPVQIRP--------------WKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLY 186 (320)
Q Consensus 124 ~~vkis~~~~---~~K~vqvrP--------------w~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~f 186 (320)
+||..|.-.. ...+.|+|- -.++.+...........+--.++|+++-+++|=|-|+++|++ |
T Consensus 96 ~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~-f 174 (492)
T KOG1190|consen 96 IYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSK-F 174 (492)
T ss_pred eeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhh-c
Confidence 4443331100 011111111 011110000000111122357999999999999999999999 9
Q ss_pred CCeeEEEEecCCCCCCcceE-EEEEecCHHHHHHH---HHhcc
Q psy11409 187 GGVCYAGIDTDPELKYPKGA-GRVAFASQASYIAA---ISARF 225 (320)
Q Consensus 187 G~V~~v~I~~D~~tg~pkGf-gfVtF~~~esa~kA---i~~~~ 225 (320)
|.|..+ .+=. +.-|| |.|.|.+.++|..| ++.+.
T Consensus 175 G~VlKI--iTF~---Knn~FQALvQy~d~~sAq~AK~aLdGqn 212 (492)
T KOG1190|consen 175 GFVLKI--ITFT---KNNGFQALVQYTDAVSAQAAKLALDGQN 212 (492)
T ss_pred ceeEEE--EEEe---cccchhhhhhccchhhHHHHHHhccCCc
Confidence 999654 4432 23466 67999999988776 45554
No 98
>KOG1548|consensus
Probab=98.61 E-value=5.5e-07 Score=86.43 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=106.4
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEeccccc-----CCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEE
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKA-----ESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLC 127 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~-----~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vk 127 (320)
..|||.|||.|+|-+++.++|++||-|..+.-... -..+.|..||=|-+.|-.++||+-|++..... .++..++
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 46999999999999999999999999984311000 01235899999999999999999999887654 3455555
Q ss_pred ecCCCc------------cCCC--------cccc--ccccCCcccccCCCCCCCCCCeEEEcCCCc----cch-------
Q psy11409 128 VSSPTI------------KDKP--------VQIR--PWKLTDADFVLDASMPLDPRKTVFVGGVPR----PLK------- 174 (320)
Q Consensus 128 is~~~~------------~~K~--------vqvr--Pw~~~d~~y~~~~~~~~~~~~tVFVGnLp~----~~T------- 174 (320)
|..-.. +.|. +|.. -|+... +........+||.+.|+=- +.+
T Consensus 215 VerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-----~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 215 VERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-----DDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred EehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-----cccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 542110 0001 1111 122211 0111222357888888732 223
Q ss_pred HHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 175 ALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 175 eedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|.+--++ ||.|..|.|- |+ .|.|.+-|+|.|.+.|..||..
T Consensus 290 kedl~eec~K-~G~v~~vvv~-d~---hPdGvvtV~f~n~eeA~~ciq~ 333 (382)
T KOG1548|consen 290 KEDLTEECEK-FGQVRKVVVY-DR---HPDGVVTVSFRNNEEADQCIQT 333 (382)
T ss_pred HHHHHHHHHH-hCCcceEEEe-cc---CCCceeEEEeCChHHHHHHHHH
Confidence 2445555677 9999998654 42 5799999999999999999974
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=98.58 E-value=1.9e-07 Score=70.16 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=41.4
Q ss_pred CHHHHHHHhc----cCCCeEEec-ccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 66 DHEEITASFR----RFGPLVVDW-PHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 66 tEe~L~~~Fs----~FG~V~v~~-p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+++|+++|+ +||+|..+. +..+....++++||||||.|+++++|++|++..++
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g 59 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG 59 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3688999999 999998653 22222112388999999999999999999987654
No 100
>KOG0226|consensus
Probab=98.55 E-value=1.3e-07 Score=87.57 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=102.7
Q ss_pred CcEEEcCCCCCCCHHH-H--HHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEec
Q psy11409 54 PPQFPLQGTPHYDHEE-I--TASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVS 129 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~-L--~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis 129 (320)
...|++++-.++..+- | -..|+.+-.+...-..++. -+.-++++|+.|.......++-...... .++.-|+++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~---p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR---PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC---CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 4677888888887766 4 6778877777643333332 2567899999987765444332111100 111112221
Q ss_pred CCCccCCCccccccccCCcccccCCC--CCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDAS--MPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAG 207 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~--~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfg 207 (320)
.-+ -|. +++ .-.+.+.+||.|-|.-+++++.|...|.+ |-.--.+++.+|+.||++||||
T Consensus 174 ~gt---------swe--------dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgyg 235 (290)
T KOG0226|consen 174 AGT---------SWE--------DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYG 235 (290)
T ss_pred ccc---------ccC--------CcccccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccce
Confidence 111 111 111 12234589999999999999999999999 9999999999999999999999
Q ss_pred EEEecCHHHHHHHHHh
Q psy11409 208 RVAFASQASYIAAISA 223 (320)
Q Consensus 208 fVtF~~~esa~kAi~~ 223 (320)
||.|.+..+|..|+..
T Consensus 236 fVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 236 FVSFRDPADYVRAMRE 251 (290)
T ss_pred eeeecCHHHHHHHHHh
Confidence 9999999999999764
No 101
>KOG0105|consensus
Probab=98.55 E-value=1e-07 Score=84.74 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=54.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
...+|||||||.++.+.||.++|-+ ||.|..+.+-.-+ .+-.||||.|++..+|+.||..+-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccc
Confidence 3578999999999999999999999 9999998765543 456899999999999999997653
No 102
>KOG4207|consensus
Probab=98.50 E-value=1.7e-07 Score=84.54 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=56.6
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.|-|-||-+-+|.++|+.+|++||.|-++.+-+|. .|+.++|||||.|.+..+|+.||++...
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr--~Tr~sRgFaFVrf~~k~daedA~damDG 77 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDR--YTRQSRGFAFVRFHDKRDAEDALDAMDG 77 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceeccccc--ccccccceeEEEeeecchHHHHHHhhcc
Confidence 78899999999999999999999999977665553 5789999999999999999999998765
No 103
>KOG0153|consensus
Probab=98.49 E-value=2.5e-07 Score=88.81 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=54.9
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFV 226 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~ 226 (320)
-+|+|||||-..+++.+|+++|-+ ||+|.++.|... +|+|||+|.++++|++|.+..|-
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc
Confidence 389999999999999999999999 999999999988 57999999999999999987663
No 104
>KOG0120|consensus
Probab=98.46 E-value=6.2e-07 Score=90.68 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccC-----------CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRF-----------GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~F-----------G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.-...++||++|+.++|+++-.+|..= |+=.+.. .....+.|+||.|.+.+.+..++.....
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~-------~~n~~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSV-------QLNLEKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeee-------eecccccceeEEecCCCchhhhhcccch
Confidence 335689999999999999999999752 2211100 1235789999999999999888765432
Q ss_pred CCCceEEEecCCCccCCCcccccccc-CCc-c--cccC--CCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEE
Q psy11409 120 DEDKCYLCVSSPTIKDKPVQIRPWKL-TDA-D--FVLD--ASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAG 193 (320)
Q Consensus 120 ~~~~~~vkis~~~~~~K~vqvrPw~~-~d~-~--y~~~--~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~ 193 (320)
...+.-+++..++-. |+-|-.. +-+ . +... .....+...++||||||..++++++.++.+. ||.+..-.
T Consensus 246 ~f~g~~~~~~r~~d~----~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~ 320 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDY----QPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFR 320 (500)
T ss_pred hhCCCCceecccccc----cCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhhe
Confidence 223333444332211 1111100 000 0 0000 1122344578999999999999999999998 99999999
Q ss_pred EecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 194 IDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 194 I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
+..|..||.+|||||..|-+......|++.-+
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLn 352 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN 352 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccc
Confidence 99999999999999999999999999988643
No 105
>KOG0415|consensus
Probab=98.43 E-value=2.8e-07 Score=88.74 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHH-HhcccccccC
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAI-SARFVQLQHG 231 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi-~~~~~~i~~~ 231 (320)
+|..-+||--|.+-+|+|||.-||+. ||.|.++.|++|.+||-+--+|||.|.+.+|.++|. +.-.+.|+..
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 45678999999999999999999999 999999999999999999999999999999999994 4444555543
No 106
>KOG0109|consensus
Probab=98.40 E-value=2.4e-07 Score=87.22 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=62.4
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccc-ccc-------cCcc
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFV-QLQ-------HGEI 233 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~-~i~-------~~~~ 233 (320)
.++||||||..+++.+|+.+|++ ||+|.++.|+.. +|||-.+++..+..||.+-.+ +|+ ..+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999 999999999977 799999999999999985322 222 1111
Q ss_pred ceEEEeccccccccccccccCc
Q psy11409 234 DKRVEVKPYVLDDQMCDECQGV 255 (320)
Q Consensus 234 ~k~v~ikpy~~~~~~c~~c~~~ 255 (320)
.-+..-|+.| ..+|..|...
T Consensus 74 Ksk~stkl~v--gNis~tctn~ 93 (346)
T KOG0109|consen 74 KSKASTKLHV--GNISPTCTNQ 93 (346)
T ss_pred cCCCcccccc--CCCCccccCH
Confidence 1234555554 3466666654
No 107
>KOG0124|consensus
Probab=98.35 E-value=4.3e-07 Score=87.80 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=59.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR 224 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~ 224 (320)
.+||||.+.+.+.|+.|+..|.. ||.|.++.+--|+-|+++||||||.|+-.|.|.-|++.-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~P-FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred HheeeeeeEEEechHHHHhhccC-CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHh
Confidence 68999999999999999999999 999999999999999999999999999999999999853
No 108
>KOG0116|consensus
Probab=98.34 E-value=7.1e-07 Score=88.94 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=57.2
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEe-cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVD-WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~-~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
...|||+|||.|+++++|+++|.+||+|+.. +.++.. .++...||||+|++.++|+.||++.....+++.+.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~---~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP---GGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc---CCCcCceEEEEEeecchhhhhhhcCccccCCeeEEE
Confidence 3469999999999999999999999999843 333321 234449999999999999999999866555544443
No 109
>KOG4208|consensus
Probab=98.32 E-value=1e-06 Score=79.34 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccC-CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRF-GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~F-G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
....=++|+.+|.-..|.++..+|++| |.|......+. +.||.|||||||.|++++.|+=|-+..+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn--krTGNSKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN--KRTGNSKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc--cccCCcCceEEEEeccHHHHHHHHHHhhhh
Confidence 345578999999999999999999998 67776666564 368999999999999999888777776654
No 110
>KOG0132|consensus
Probab=98.31 E-value=1.1e-06 Score=91.42 Aligned_cols=109 Identities=19% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEEe
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEV 239 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~i 239 (320)
++|||||+|+..+++.||+.+|++ ||.|++|.+.- ++|+|||+.....+|.+|+.+ ..+.+....+..+--+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHh-cccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 489999999999999999999999 99999996544 489999999999999999865 2222222211112234
Q ss_pred ccccccccccccccCcccCCCcccccCCccchhhhcchhh
Q psy11409 240 KPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHC 279 (320)
Q Consensus 240 kpy~~~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~c 279 (320)
-+. +++.-|+ |...--+.-+.||-=-... |.-+|+.=
T Consensus 494 g~G-~kse~k~-~wD~~lGVt~IP~~kLt~d-l~~~~ega 530 (894)
T KOG0132|consen 494 GKG-PKSEYKD-YWDVELGVTYIPWEKLTDD-LEAWCEGA 530 (894)
T ss_pred cCC-cchhhhh-hhhcccCeeEeehHhcCHH-HHHhhhhc
Confidence 454 3432221 2221113345566544444 77777763
No 111
>KOG0153|consensus
Probab=98.30 E-value=2.1e-06 Score=82.51 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=65.6
Q ss_pred CCCCccCCCCcchhhHHHHHHhhhhcCCCCCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCC
Q psy11409 12 RSPYISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESK 91 (320)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~ 91 (320)
++|.-+-||.||+-+.=++. ... ++.++|.+ .....+||||||-..++|.+|+++|.+||+|+.....
T Consensus 194 ni~dryyg~ndPva~kil~r--a~~-~~~lepPe----D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~----- 261 (377)
T KOG0153|consen 194 NIKDRYYGLNDPVALKILNR--AGS-AGTLEPPE----DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL----- 261 (377)
T ss_pred ccccccccccChHHHHHHhh--ccc-ccccCCCc----ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-----
Confidence 44555567777764332222 112 23345442 2336799999999999999999999999999954332
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 92 SYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 92 ~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+|+|||+|.+.++|+.|......
T Consensus 262 ---~~~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 262 ---PRKGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred ---cccccceeeehhhHHHHHHHHhhcc
Confidence 3457999999999999999876543
No 112
>KOG0120|consensus
Probab=98.29 E-value=5e-06 Score=84.20 Aligned_cols=183 Identities=17% Similarity=0.104 Sum_probs=112.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCC-CceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDE-DKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~-~~~~vkis~ 130 (320)
...++||||||..+++..+++....||++..-...++. .+|-++||+|-+|.+..-...|+...+... +...+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~--~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq- 364 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS--ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ- 364 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc--ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee-
Confidence 35699999999999999999999999999854344442 468999999999999988888888776642 22222111
Q ss_pred CCccCCCcccccccc-CCccccc-CCC--CCCCCCCeEEEcCCCccchHH-------------HHHHHHhhhCCCeeEEE
Q psy11409 131 PTIKDKPVQIRPWKL-TDADFVL-DAS--MPLDPRKTVFVGGVPRPLKAL-------------ELAMIMDRLYGGVCYAG 193 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~-~d~~y~~-~~~--~~~~~~~tVFVGnLp~~~Tee-------------dL~~~F~~~fG~V~~v~ 193 (320)
... ....++.+|.. ++..... ... +.....+.|- -|-..+|.+ +++.-+++ ||.|..|.
T Consensus 365 ~A~-~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl--~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ 440 (500)
T KOG0120|consen 365 RAI-VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL--CLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVE 440 (500)
T ss_pred hhh-ccchhccccCCccccccccchhhhcccCCCcchhh--hhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEe
Confidence 111 11122334433 1111100 000 1111111111 122233332 33344567 99999999
Q ss_pred EecCCCCCCc---ceEEEEEecCHHHHHHHHHhcccccccCccceEEEecccccc
Q psy11409 194 IDTDPELKYP---KGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLD 245 (320)
Q Consensus 194 I~~D~~tg~p---kGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~ 245 (320)
|+.+-....+ -|--||.|.+.++..+|.++ +.+.++.-++=+--|+.+
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~----L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE----LTGRKFANRTVVASYYDE 491 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHH----ccCceeCCcEEEEEecCH
Confidence 9998323333 46679999999999999774 678888766656566533
No 113
>KOG0132|consensus
Probab=98.23 E-value=1.7e-06 Score=90.09 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
--+++||||+|+..++|++|.++|+.||+|..+.. ..+||+|||++....+|++||++...
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l--------i~~R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL--------IPPRGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEee--------ccCCceeEEEEeehhHHHHHHHHHhc
Confidence 34689999999999999999999999999996433 35889999999999999999998763
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.22 E-value=3.2e-06 Score=60.35 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 178 LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 178 L~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
|.++|++ ||+|..+.+..++ +|+|||+|.+.++|.+|++.
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~ 40 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQ 40 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHH
T ss_pred ChHHhCC-cccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHH
Confidence 7899999 9999999998774 79999999999999999974
No 115
>KOG4208|consensus
Probab=98.20 E-value=3.5e-06 Score=76.01 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=57.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhC-CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLY-GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR 224 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~f-G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~ 224 (320)
...-++|+-+|.-+.+.++..+|.+ | |.|..+++-+.+.||.+||||||.|.+++.|+-|.++-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q-~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETM 112 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQ-FGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETM 112 (214)
T ss_pred CccceeecccccchhHHHHhhhhhh-cCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHh
Confidence 3456999999999999999999999 7 77888888899999999999999999999999998763
No 116
>KOG0116|consensus
Probab=98.17 E-value=2.6e-06 Score=84.98 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=60.7
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCC-CCCCcceEEEEEecCHHHHHHHHHhcccccccCc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDP-ELKYPKGAGRVAFASQASYIAAISARFVQLQHGE 232 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~-~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~ 232 (320)
...+|||+|||.++|.++|.+.|.+ ||.|...+|..=. .-+.+ .||||+|.+.+++..||.+.-+.|...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~-~fgFV~f~~~~~~~~~i~Asp~~ig~~k 358 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNP-CFGFVEFENAAAVQNAIEASPLEIGGRK 358 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcC-ceEEEEEeecchhhhhhhcCccccCCee
Confidence 3467999999999999999999999 9999999999743 23344 9999999999999999999876676543
No 117
>KOG0130|consensus
Probab=98.17 E-value=2.5e-06 Score=72.51 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+--|||.|+....||++|.+.|..||+|+-.-.--+ +.||-.|||+.|.|++.+.|++|+...+.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD--RRtGy~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD--RRTGYVKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccc--cccccccceeeeehHhHHHHHHHHHhccc
Confidence 346999999999999999999999999985333222 46899999999999999999999998874
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.13 E-value=7.5e-06 Score=58.43 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=34.5
Q ss_pred HHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 70 ITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 70 L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
|+++|++||+|......+. .+|+|||+|.+.++|++|++..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~-------~~~~a~V~f~~~~~A~~a~~~l~~ 43 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-------KRGFAFVEFASVEDAQKAIEQLNG 43 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-------STTEEEEEESSHHHHHHHHHHHTT
T ss_pred ChHHhCCcccEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCC
Confidence 7899999999996555331 169999999999999999987654
No 119
>KOG0129|consensus
Probab=98.12 E-value=6.2e-06 Score=82.79 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhc-cCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFR-RFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs-~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
.|.++|||||||.-++.++|..+|. -||-|.-+-+-.| ...+-+||-|-|+|++..+--+||.+ .||.|.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD--~k~KYPkGaGRVtFsnqqsYi~AIsa-------rFvql~ 438 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD--PKLKYPKGAGRVTFSNQQAYIKAISA-------RFVQLD 438 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC--cccCCCCCcceeeecccHHHHHHHhh-------heEEEe
Confidence 5678999999999999999999999 4999984322222 23467999999999999999999986 456665
Q ss_pred CCCccCCCccccccccCCcc
Q psy11409 130 SPTIKDKPVQIRPWKLTDAD 149 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~ 149 (320)
.-.+ .|+|||+|.++.|.-
T Consensus 439 h~d~-~KRVEIkPYv~eDq~ 457 (520)
T KOG0129|consen 439 HTDI-DKRVEIKPYVMEDQL 457 (520)
T ss_pred cccc-ceeeeecceeccccc
Confidence 4333 479999999877664
No 120
>KOG4209|consensus
Probab=98.11 E-value=3.2e-06 Score=78.31 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=65.0
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCcc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEI 233 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~ 233 (320)
.+.|||||+.+..|.+++..+|+- +|.|..++|+.|+.++.+||||||.|.+.+.+++|+....-.|....+
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i 172 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAI 172 (231)
T ss_pred CceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccc
Confidence 478999999999999999999998 999999999999999999999999999999999999866655655444
No 121
>KOG0533|consensus
Probab=98.02 E-value=1.9e-05 Score=73.52 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=61.0
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc-cccccC
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF-VQLQHG 231 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~-~~i~~~ 231 (320)
.+|.|.|||..++++||.++|++ ||.+..|-+-.|+ .|.+.|.|=|+|...++|..|++.-. +.+++.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 78999999999999999999999 9999999999995 99999999999999999999987622 444443
No 122
>KOG4206|consensus
Probab=98.02 E-value=1.7e-05 Score=72.42 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=53.8
Q ss_pred CCCCCeEEEcCCCccchHHHHHH----HHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAM----IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~----~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..++.||||-||+..+..++|+. +|++ ||.|.+|... .|.+.||-|||.|.+.++|-.|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~ 71 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAF---KTPKMRGQAFVVFKETEAASAALRA 71 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEec---CCCCccCceEEEecChhHHHHHHHH
Confidence 34556999999999999999998 9999 9999776544 3678899999999999999999874
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.01 E-value=4.7e-05 Score=61.51 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=56.2
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhC-CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLY-GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~f-G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++||-|.|||...|.++|.+++++.+ |....+-++.|..++-..|||||.|.+.+++.+-.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 36899999999999999999998644 7789999999999999999999999999999876543
No 124
>KOG1365|consensus
Probab=97.96 E-value=8.1e-05 Score=72.71 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=108.1
Q ss_pred EEEcCCCCCCCHHHHHHHhccC----CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 56 QFPLQGTPHYDHEEITASFRRF----GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 56 vFVGgLp~dvtEe~L~~~Fs~F----G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
|=..||||..++.++..+|.-- |-+..|. ...|+-.|.|-|.|.|++.-+-|++...+.++..|+.+=..
T Consensus 63 vRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG------~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 63 VRARGLPWQSSDQDIARFFKGLNIANGGRALCL------NAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred EEecCCCCCcccCCHHHHHhhhhccccceeeee------hhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 3347999999999999999632 2222221 12367789999999999999999998877776666655322
Q ss_pred CccCCCccccccccCCcccccC-CCCCCCCC--CeEEEcCCCccchHHHHHHHHh---hhCCCeeEEEEecCCCCCCcce
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLD-ASMPLDPR--KTVFVGGVPRPLKALELAMIMD---RLYGGVCYAGIDTDPELKYPKG 205 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~-~~~~~~~~--~tVFVGnLp~~~TeedL~~~F~---~~fG~V~~v~I~~D~~tg~pkG 205 (320)
+.+.- +.+.+ +... ....+... --|=+.|||++.|+.|+.++|. ..-|.++.|-.++-+ .|++.|
T Consensus 137 ~ge~f-~~iag-------g~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTG 207 (508)
T KOG1365|consen 137 TGEEF-LKIAG-------GTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTG 207 (508)
T ss_pred Cchhh-eEecC-------CccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCccc
Confidence 21110 00100 0000 11111112 2355589999999999999995 223577788777776 899999
Q ss_pred EEEEEecCHHHHHHHHH-------hcccccc
Q psy11409 206 AGRVAFASQASYIAAIS-------ARFVQLQ 229 (320)
Q Consensus 206 fgfVtF~~~esa~kAi~-------~~~~~i~ 229 (320)
=|||.|..++.|..|+. .|||++-
T Consensus 208 dAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 208 DAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999974 4677643
No 125
>KOG1456|consensus
Probab=97.90 E-value=0.00042 Score=67.66 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=118.2
Q ss_pred CCCCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceE
Q psy11409 50 SFPSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCY 125 (320)
Q Consensus 50 ~~~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~ 125 (320)
..++.-+.|-||.- .++-+.|.++|-.||.|..+..+|.. -|-|.|.+.|+.+|++|+.-.+.. ++++.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-------~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-------PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-------cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 45677899999985 67789999999999999977777643 388999999999999999877653 67788
Q ss_pred EEecCCCccCCCccccccccCCcc-----cccCC------------CCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCC
Q psy11409 126 LCVSSPTIKDKPVQIRPWKLTDAD-----FVLDA------------SMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGG 188 (320)
Q Consensus 126 vkis~~~~~~K~vqvrPw~~~d~~-----y~~~~------------~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~ 188 (320)
+++|.... .-+ +-|+.+.|.. |..+. .....|+..+---|.|..+|||.|..+|.+ -+.
T Consensus 357 v~~SkQ~~-v~~--~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ne-k~v 432 (494)
T KOG1456|consen 357 VCVSKQNF-VSP--VQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNE-KDV 432 (494)
T ss_pred Eeeccccc-ccc--CCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhh-cCC
Confidence 88875321 112 2456555542 22221 112346678888999999999999999998 443
Q ss_pred eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 189 VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 189 V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
- -+.|..=+-....--.|.+.|++.+.|..||..-.
T Consensus 433 ~-~~svkvFp~kserSssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 433 P-PTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred C-cceEEeecccccccccceeeeehHHHHHHHHHHhc
Confidence 2 44444333223445678999999999999987543
No 126
>KOG4454|consensus
Probab=97.89 E-value=6.7e-06 Score=74.96 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=56.1
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
..+||||+|+-..+|||-|.++|=+ -|.|..|.|+.++ .+.+| ||||.|.++-++.-|++
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~ 67 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQ 67 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhh
Confidence 4589999999999999999999999 9999999999996 77788 99999999999999975
No 127
>KOG0415|consensus
Probab=97.89 E-value=1.1e-05 Score=77.99 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
.-|.+-|||--|.+-+|+++|.-+|+.||+|..|-++++. .||-|--||||.|++++++++|.=..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~--ktgdsLqyaFiEFen~escE~AyFKM 301 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR--KTGDSLQYAFIEFENKESCEQAYFKM 301 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecc--cccchhheeeeeecchhhHHHHHhhh
Confidence 4567899999999999999999999999999988787775 47999999999999999999987443
No 128
>KOG0112|consensus
Probab=97.86 E-value=1.6e-05 Score=84.22 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=97.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
.-...+||+|||+.++++.+|+..|..+|.|..+-+ +. ..-+.---|+||.|.+-..+-.|.....
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDi-Kt--P~~~~esa~~f~~~~n~dmtp~ak~e~s----------- 434 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDI-KT--PHIKTESAYAFVSLLNTDMTPSAKFEES----------- 434 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhcccccccc-cc--CCCCcccchhhhhhhccccCcccchhhc-----------
Confidence 345679999999999999999999999999984322 11 1123455799999988765554443221
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
.+.+..-..++. | ......+.+.++||+|+....-..|.+.|++ ||.|..+. .|. | --+|+|
T Consensus 435 ~~~I~~g~~r~g--------l---G~~kst~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Id--y~h--g--q~yayi 496 (975)
T KOG0112|consen 435 GPLIGNGTHRIG--------L---GQPKSTPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIID--YRH--G--QPYAYI 496 (975)
T ss_pred CCccccCccccc--------c---cccccccceeeccCCCCCCChHHHHHHHhhc-cCcceeee--ccc--C--Ccceee
Confidence 121211111110 0 0013345688999999999999999999998 99998743 332 2 348999
Q ss_pred EecCHHHHHHHHH
Q psy11409 210 AFASQASYIAAIS 222 (320)
Q Consensus 210 tF~~~esa~kAi~ 222 (320)
.|.+...+..|..
T Consensus 497 ~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 497 QYESPPAAQAATH 509 (975)
T ss_pred ecccCccchhhHH
Confidence 9999999999875
No 129
>KOG4661|consensus
Probab=97.84 E-value=3.2e-05 Score=78.63 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=58.4
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++++|.||...+.+.||+.+|++ ||+|+-+++++.-.+--.+-|||||+.+.+.|.+||+.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHH
Confidence 478999999999999999999999 99999999999977777799999999999999999985
No 130
>KOG0226|consensus
Probab=97.80 E-value=2.9e-05 Score=72.17 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=56.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
....+||.|.|..+++++.|...|++|-+-.-..++++ ++||+++||+||.|.+.++...||...+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd--kRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD--KRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccccc--ccccccccceeeeecCHHHHHHHHHhhc
Confidence 44579999999999999999999999988765555555 3689999999999999999999997644
No 131
>KOG0151|consensus
Probab=97.74 E-value=9.7e-05 Score=76.77 Aligned_cols=64 Identities=20% Similarity=0.415 Sum_probs=57.0
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeE---EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLV---VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~---v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+|||||++.++|+.|...|+.||+|. +-||..+.. ..+.+-+|||.|-+..++++|+...+.
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE--k~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE--KRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhh--hccccccceeeehhhhhHHHHHHHhcc
Confidence 5899999999999999999999999996 569988753 467889999999999999999987765
No 132
>KOG4660|consensus
Probab=97.62 E-value=0.00011 Score=74.62 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=95.1
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEE
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYL 126 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~v 126 (320)
+-+.+.++|+|-|||.+|++++|+..|+.||+|+.+. .+-..+|-+||.|-|..+|++|+++.... ..+..+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-------~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-------ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-------cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3467889999999999999999999999999999621 23457899999999999999999886532 211112
Q ss_pred EecCCCccCCCccccccc--cCCccccc-------CCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecC
Q psy11409 127 CVSSPTIKDKPVQIRPWK--LTDADFVL-------DASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTD 197 (320)
Q Consensus 127 kis~~~~~~K~vqvrPw~--~~d~~y~~-------~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D 197 (320)
+.... .+-|. .++..|.. ...+..-+...+| |.|++.....-++.+|+- +|.+.. +-
T Consensus 143 k~~~~--------~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~-~~~~~~-~~--- 208 (549)
T KOG4660|consen 143 KRPGG--------ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSV-DGSSPG-RE--- 208 (549)
T ss_pred cCCCc--------ccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhc-cCcccc-cc---
Confidence 21100 01111 11111110 0112222334555 449999888888888886 888765 32
Q ss_pred CCCCCcceEEEEEecCHHHHHHHH
Q psy11409 198 PELKYPKGAGRVAFASQASYIAAI 221 (320)
Q Consensus 198 ~~tg~pkGfgfVtF~~~esa~kAi 221 (320)
+++-+=-=||.|.+..++..+.
T Consensus 209 --~~~~~hq~~~~~~~~~s~a~~~ 230 (549)
T KOG4660|consen 209 --TPLLNHQRFVEFADNRSYAFSE 230 (549)
T ss_pred --ccchhhhhhhhhccccchhhcc
Confidence 2222223467788888874443
No 133
>KOG0151|consensus
Probab=97.62 E-value=7.2e-05 Score=77.71 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=58.4
Q ss_pred CC-CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEe---cCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DP-RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGID---TDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~-~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~---~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
|| .+++|||||++.++++.|-..|+. ||+|..|+|+ ++-+..+.+-+|||.|.+..++++|++.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence 44 478999999999999999999999 9999999999 6667778899999999999999999875
No 134
>KOG1457|consensus
Probab=97.53 E-value=0.00022 Score=65.44 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=52.0
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEe-cCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGID-TDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~-~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.-+|+||.|||-++...||..+|.. |-.-+...|- +++..+-.+-+|||+|.+..+|..|..+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamna 96 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNA 96 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhcc-CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHH
Confidence 4589999999999999999999998 7666665554 6665555678999999999999888654
No 135
>KOG4307|consensus
Probab=97.52 E-value=0.0005 Score=71.51 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=113.0
Q ss_pred CcEEEcCCCCCCCHHHHHHHhcc-CCCeEEecccccCCCCCCCC-cceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRR-FGPLVVDWPHKAESKSYFPP-KGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~-FG~V~v~~p~k~~~~~tg~s-kGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
..+=+.|.+++.++.+++++|-- +=.-.. ..++ .-+++ .|-++|.|....++++|++....++...++.++.+
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~--l~~~---~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGRNAQSTD--LSEN---RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred heeeecccccccccchhhhhcCcccccccc--hhhh---hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 45556899999999999999853 211111 1111 12344 79999999999999999987665554555555422
Q ss_pred CccC------CCccccccccCCc--ccc------cCCCC----CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEE
Q psy11409 132 TIKD------KPVQIRPWKLTDA--DFV------LDASM----PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAG 193 (320)
Q Consensus 132 ~~~~------K~vqvrPw~~~d~--~y~------~~~~~----~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~ 193 (320)
+-.. ...-+-|-..... +.. ....+ +......|||-.||.++++.++.+.|..++-.+..+.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 1110 0000001011000 000 00111 2233467999999999999999999998665555588
Q ss_pred EecCCCCCCcceEEEEEecCHHHHHHHHHhcccc-cccCccceEEEeccc
Q psy11409 194 IDTDPELKYPKGAGRVAFASQASYIAAISARFVQ-LQHGEIDKRVEVKPY 242 (320)
Q Consensus 194 I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~-i~~~~~~k~v~ikpy 242 (320)
|..-+ +++-++.|||.|..+++..+|...+..+ +. ...|+|++-
T Consensus 467 lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDSI 511 (944)
T ss_pred eccCC-cccccchhhheeccccccchhhhcccccccC----ceEEEeech
Confidence 88887 8899999999999988888886543322 22 235566665
No 136
>KOG4209|consensus
Probab=97.46 E-value=0.00017 Score=66.91 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
.....+.+|||++.+.+|-+++..+|+-||.|..+.+..+ +..+.+|||+||.|.+.+.++++|....
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d--~~~~~~k~~~yvef~~~~~~~~ay~l~g 164 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD--KFRGHPKGFAYVEFSSYELVEEAYKLDG 164 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeecc--ccCCCcceeEEEecccHhhhHHHhhcCC
Confidence 3455789999999999999999999999999973323333 2457799999999999999999998433
No 137
>KOG4661|consensus
Probab=97.42 E-value=0.00029 Score=71.86 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=54.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
--++.+||.||...+...+|+++|++||.|+-..++.+. .+---|.||||++.+.++|.++|+..+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa--RsPGaRCYGfVTMSts~eAtkCI~hLHr 469 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA--RSPGARCYGFVTMSTSAEATKCIEHLHR 469 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecC--CCCCcceeEEEEecchHHHHHHHHHhhh
Confidence 335799999999999999999999999999843333322 2234589999999999999999987764
No 138
>KOG1190|consensus
Probab=97.39 E-value=0.0046 Score=61.15 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=106.7
Q ss_pred CCcEEEcCCC-CCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEe
Q psy11409 53 SPPQFPLQGT-PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCV 128 (320)
Q Consensus 53 ~~kvFVGgLp-~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vki 128 (320)
..-|-|.||. ..+|.+.|..+|+-||+|..+.+... .+--|-|-+.|...|+-|++..... +..+.+..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-------kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-------KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-------CCcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 4578899997 58899999999999999985444332 1256999999999999999876542 34444444
Q ss_pred cCCCccCCCccccccccCCcccccC------------CC---C-CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEE
Q psy11409 129 SSPTIKDKPVQIRPWKLTDADFVLD------------AS---M-PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYA 192 (320)
Q Consensus 129 s~~~~~~K~vqvrPw~~~d~~y~~~------------~~---~-~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v 192 (320)
|.. ..+|..--...|..+.++ .+ + ...|..|+-..|+|.+++||+|+..|.+ -|.++.+
T Consensus 370 SKH----~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vka 444 (492)
T KOG1190|consen 370 SKH----TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKA 444 (492)
T ss_pred ccC----ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEe
Confidence 432 122222111223222221 11 1 2256789999999999999999999998 8888776
Q ss_pred EEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 193 GIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 193 ~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..-.- +.+=.|.+.+.+.|.|..|+-.
T Consensus 445 fkff~----kd~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 445 FKFFQ----KDRKMALPQLESVEEAIQALID 471 (492)
T ss_pred eeecC----CCcceeecccCChhHhhhhccc
Confidence 54433 2345889999999998888643
No 139
>KOG0533|consensus
Probab=97.37 E-value=0.00048 Score=64.31 Aligned_cols=65 Identities=14% Similarity=-0.016 Sum_probs=57.0
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
+.+|.|.|||..|++++|+++|.+||++.-..+.-+ ..|+|.|-|=|+|+..++|.+|++..+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~---~~G~s~Gta~v~~~r~~DA~~avk~~~gv 147 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD---RAGRSLGTADVSFNRRDDAERAVKKYNGV 147 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC---CCCCCCccceeeecchHhHHHHHHHhcCc
Confidence 468999999999999999999999998886555544 45999999999999999999999988763
No 140
>KOG4660|consensus
Probab=97.37 E-value=0.00026 Score=71.88 Aligned_cols=62 Identities=23% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 156 MPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 156 ~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...-+..+|+|-|||.++++++|..+|+. ||+|..|+ +|-..+|-.||.|.|..+|+.|+++
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir-----~t~~~~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIR-----ETPNKRGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhh-----cccccCceEEEEEeehHhHHHHHHH
Confidence 33446789999999999999999999998 99999865 4555689999999999999999865
No 141
>KOG1995|consensus
Probab=97.31 E-value=0.00024 Score=68.76 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCee--------EEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVC--------YAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~--------~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...||||-+||..+|+++|+++|.+ +|.|. .+.|.+|++|+.+||-|-|+|.+..+|+.||+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 3579999999999999999999998 99884 477889999999999999999999999999863
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.23 E-value=0.00064 Score=55.59 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=36.5
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
-|+|.|++.+++-++|++.|++ ||.|.+|.+..+- -.|+|-|.+.++|.+|++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCCC------CEEEEEECCcchHHHHHHH
Confidence 4788889999999999999999 9999999887763 3799999999999999875
No 143
>KOG1548|consensus
Probab=97.22 E-value=0.00066 Score=65.63 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=55.0
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCY--------AGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~--------v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++.|||.|||.++|-+++.++|+. +|.|.. |+|-+|. .|..||=|.++|...+|+.-||.-
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~i 202 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKI 202 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHH
Confidence 3567999999999999999999999 998764 6788884 699999999999999999999863
No 144
>KOG4210|consensus
Probab=96.96 E-value=0.00084 Score=64.14 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=60.2
Q ss_pred CCCCCCcEE-EcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEE
Q psy11409 49 LSFPSPPQF-PLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLC 127 (320)
Q Consensus 49 ~~~~~~kvF-VGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vk 127 (320)
...+..++| |+++++++++++|..+|..+|.|..+..... ..++.++||+||.|.+.....+++...++..+++.+.
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~--~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD--EESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLR 257 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCC--CCccchhhhhhhhhhhchhHHHHhhcccCcccCcccc
Confidence 456667777 9999999999999999999999985433222 2578999999999999999999987633344444443
Q ss_pred e
Q psy11409 128 V 128 (320)
Q Consensus 128 i 128 (320)
+
T Consensus 258 ~ 258 (285)
T KOG4210|consen 258 L 258 (285)
T ss_pred c
Confidence 3
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.91 E-value=0.0018 Score=52.90 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=34.3
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeE-EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 56 QFPLQGTPHYDHEEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 56 vFVGgLp~dvtEe~L~~~Fs~FG~V~-v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
|++.|++.+++.++|++.|++||+|. ++.. +.---|||-|.++++|++|++....
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~---------~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFS---------RGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE-----------TT-SEEEEEESS---HHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEec---------CCCCEEEEEECCcchHHHHHHHHHh
Confidence 67788999999999999999999887 3322 1223689999999999999987653
No 146
>KOG0128|consensus
Probab=96.89 E-value=8.5e-05 Score=78.48 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=107.4
Q ss_pred CCCcEEEcCCCCCCCHH-HHHHHhccCCCeEE-ecccccCCCCCCCCcc-eEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 52 PSPPQFPLQGTPHYDHE-EITASFRRFGPLVV-DWPHKAESKSYFPPKG-YAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe-~L~~~Fs~FG~V~v-~~p~k~~~~~tg~skG-ygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
...+..+-++.+...+. ..+..|+.+|.|+. ..|-+-. ..+.+ +++++++...+++.+......-.+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~----k~h~q~~~~~~~s~~~~~esat~pa~~~~a~----- 640 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF----KAHEQPQQQKVQSKHGSAESATVPAGGALAN----- 640 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc----cccccchhhhhhccccchhhcccccccccCC-----
Confidence 35677788887777665 67888999999984 3343211 12333 8899999999888877543321111
Q ss_pred cCCCccCCCccccccccCCcccccCCCCCCCC-----CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCc
Q psy11409 129 SSPTIKDKPVQIRPWKLTDADFVLDASMPLDP-----RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYP 203 (320)
Q Consensus 129 s~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~-----~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~p 203 (320)
+..-+- ++|..-..+. .+..+ --++||.||+..+.+++|...|.. ||.+..+.|..-+.+++.
T Consensus 641 -------~~~av~---~ad~~~~~~~-~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~ 708 (881)
T KOG0128|consen 641 -------RSAAVG---LADAEEKEEN-FKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRF 708 (881)
T ss_pred -------ccccCC---CCCchhhhhc-cCcCchHHHHHHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhcccc
Confidence 000000 1111100110 11111 257999999999999999999999 999999999988889999
Q ss_pred ceEEEEEecCHHHHHHHHHhcccc
Q psy11409 204 KGAGRVAFASQASYIAAISARFVQ 227 (320)
Q Consensus 204 kGfgfVtF~~~esa~kAi~~~~~~ 227 (320)
||.|||.|...+++.+||+.++..
T Consensus 709 rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 709 RGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred ccceeeEeecCCchhhhhhhhhhh
Confidence 999999999999999999876544
No 147
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.81 E-value=0.0038 Score=44.73 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=42.3
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi 221 (320)
+.|=|.|.+....+ ++..+|.+ ||+|+...+... +=+.+|.|.++.++++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~-fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFAS-FGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHh-cCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56889999988664 45559998 999999888733 357899999999999985
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.54 E-value=0.0065 Score=49.11 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=49.0
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccC--CCeE-EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRF--GPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~F--G~V~-v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+|-|.|||...|.++|.+.+... |... .-.|+.- .++.+.|||||-|.+.+.+.+..+..++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf---~~~~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDF---KNKCNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeec---cCCCceEEEEEEcCCHHHHHHHHHHHcC
Confidence 479999999999999999999763 3332 2244432 3567899999999999999998887654
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.49 E-value=0.0041 Score=44.58 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=39.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHH
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLI 114 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL 114 (320)
+.|=|.|-|.+..+. +..+|.+||+|..... ....-+.||.|.++.++++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~--------~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYV--------PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEc--------CCCCcEEEEEECCHHHHHhhC
Confidence 467788888776655 5559999999995221 123568999999999999986
No 150
>KOG0106|consensus
Probab=96.42 E-value=0.0022 Score=58.86 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=46.3
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
.+||||+||+.+.+.+|..+|.. ||.|-.|.+. -|||||.|.+..+|..||-
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk--------~gf~fv~fed~rda~Dav~ 53 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADMK--------NGFGFVEFEDPRDADDAVH 53 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-ccccccceee--------cccceeccCchhhhhcccc
Confidence 36999999999999999999999 9999888543 3788999999999999974
No 151
>KOG1456|consensus
Probab=96.18 E-value=0.046 Score=53.79 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=95.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-----CCceE
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-----EDKCY 125 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-----~~~~~ 125 (320)
.++.-|-|.||-..++|.+|.+..+.||+|..+..+ +.+--+-|.|+|-+.+++++.-.... +...+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~--------P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM--------PHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEec--------cccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 456789999999999999999999999999854322 23346899999999999888643211 01111
Q ss_pred EEec-CCCccCCCccccccccCCcccccCCCCCCCCCCeEE--EcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCC
Q psy11409 126 LCVS-SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVF--VGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKY 202 (320)
Q Consensus 126 vkis-~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVF--VGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~ 202 (320)
+..| +..++ | ...+...+++-+. |=|-=+.+|.+-|.+|-.. .|+|..+-|..- +|
T Consensus 101 ~NyStsq~i~------R-----------~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkk--ng- 159 (494)
T KOG1456|consen 101 FNYSTSQCIE------R-----------PGDESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKK--NG- 159 (494)
T ss_pred cccchhhhhc------c-----------CCCCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEec--cc-
Confidence 1111 11110 1 1111122333222 3566689999999999998 999998888754 22
Q ss_pred cceEEEEEecCHHHHHHHHHh
Q psy11409 203 PKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 203 pkGfgfVtF~~~esa~kAi~~ 223 (320)
=-|.|.|++.++|.+|-++
T Consensus 160 --VQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 160 --VQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred --eeeEEeechhHHHHHHHhh
Confidence 2389999999999998543
No 152
>KOG4849|consensus
Probab=96.15 E-value=0.0037 Score=60.71 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeE--EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~--v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
.-+|||||-|.+|+++|.+....-|--. +...... +.+|.|||||.|...++.+|++.|+-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN--R~NGQSKG~AL~~~~SdAa~Kq~MeiL 144 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN--RTNGQSKGYALLVLNSDAAVKQTMEIL 144 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc--ccCCcccceEEEEecchHHHHHHHHhc
Confidence 4689999999999999999887666432 2111112 346999999999999999999999854
No 153
>KOG2314|consensus
Probab=96.11 E-value=0.015 Score=59.72 Aligned_cols=61 Identities=25% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCeEEEcCCCccchH------HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKA------LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~Te------edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..-|+|-|+|---.+ .-|.++|++ +|+|+...++.|.++| .+|+.|+.|.+..+|++||..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCC-eeeEEEEEecChhhHHHHHHh
Confidence 357899999864333 346789999 9999999999997665 999999999999999999975
No 154
>KOG1995|consensus
Probab=95.94 E-value=0.0088 Score=58.16 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEe--------cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVD--------WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~--------~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+|||.+||..++++.|.++|.++|.|.-. |..++ +.|+++||=|-|+|+|..++++|+.....
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~d--keT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTD--KETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccc--ccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 4599999999999999999999999999732 22222 36899999999999999999999976543
No 155
>KOG0115|consensus
Probab=95.79 E-value=0.017 Score=54.04 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++-|+|-||+.-+..|.|.+-|+. ||.|+.+-+..| +.+++.|-++|.|.+.-++.+|+..
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRR-FGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhh-cCccchheeeec-ccccccccchhhhhcchhHHHHHHH
Confidence 3478999999999999999999999 999999999999 6999999999999999999999764
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.71 E-value=0.027 Score=54.70 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=51.0
Q ss_pred CcEEEcCCCCCCCHHH------HHHHhccCCCeEEecccccC-CCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceE
Q psy11409 54 PPQFPLQGTPHYDHEE------ITASFRRFGPLVVDWPHKAE-SKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCY 125 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~------L~~~Fs~FG~V~v~~p~k~~-~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~ 125 (320)
.=+||-|||+.+..|+ =.+||+|||.|.-..+-|.. ..++-.+---+||+|.+.++|.++|++-.+. .++.-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4689999999887666 35899999999843333322 2222222233699999999999999876543 34444
Q ss_pred EEec
Q psy11409 126 LCVS 129 (320)
Q Consensus 126 vkis 129 (320)
++.+
T Consensus 195 lkat 198 (480)
T COG5175 195 LKAT 198 (480)
T ss_pred Eeee
Confidence 4443
No 157
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.64 E-value=0.044 Score=40.74 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=45.0
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccC----CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRF----GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~F----G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
..+|.|.|+ -+++.++++.+|..| ++..++|+-. + -+=|+|.+++.|.+||.+
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD--t--------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD--T--------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC--C--------cEEEEECCHHHHHHHHHc
Confidence 348999998 468899999999999 9999999943 2 378999999999999964
No 158
>KOG4676|consensus
Probab=95.41 E-value=0.025 Score=55.79 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=101.1
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEe--cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEec--
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVD--WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVS-- 129 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~--~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis-- 129 (320)
-|=|.||.+.+|.+.++.+|+-.|.|... +|.-++. .-.-..--|||-|.|..+|..|-...+.. .+...|.+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~-~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDS-KIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCc-cCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 67899999999999999999999999853 4422222 11234567999999999987765443321 222222221
Q ss_pred CCCccCC-------CccccccccC-Cccc----------------ccCCC-------CCC-CCCCeEEEcCCCccchHHH
Q psy11409 130 SPTIKDK-------PVQIRPWKLT-DADF----------------VLDAS-------MPL-DPRKTVFVGGVPRPLKALE 177 (320)
Q Consensus 130 ~~~~~~K-------~vqvrPw~~~-d~~y----------------~~~~~-------~~~-~~~~tVFVGnLp~~~Teed 177 (320)
...+... ...+-|-.+. |+-. ...+. ..+ ...+|++|++|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 0111000 0000000000 0000 00000 011 1247899999999999999
Q ss_pred HHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 178 LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 178 L~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+-+.|+. +|+|.++...-... .-++-|.|....+...|+..
T Consensus 168 ~~e~f~r-~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 168 SGESFER-KGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhh-cchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHh
Confidence 9999998 99999998875542 23445999999999999865
No 159
>KOG1855|consensus
Probab=95.30 E-value=0.054 Score=54.06 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=55.6
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEeccccc---CCCCCCCC--------cceEEEEeCCHHHHHHHHHh
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKA---ESKSYFPP--------KGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~---~~~~tg~s--------kGygFV~F~~eesv~kaL~~ 116 (320)
....++++|.+=|||.|-.-+.|.++|+.+|.|..+.+-+. .....+.+ +-.|+|.|+.-++|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34567899999999999999999999999999984433332 21112222 56799999999999999987
Q ss_pred CccC
Q psy11409 117 CIVD 120 (320)
Q Consensus 117 ~~~~ 120 (320)
.+.+
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7544
No 160
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.16 E-value=0.077 Score=41.84 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=43.9
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
.-||--..|..+...+|.++|+.||.|.+.|+.. .-|||...+.+.|+.++....
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~VsWi~d----------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIND----------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEEEEEECT----------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEEEEEEcC----------CcEEEEeecHHHHHHHHHHhc
Confidence 3688788999999999999999999999999933 259999999999999887643
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.95 E-value=0.048 Score=44.32 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=42.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEec-ccccCCC----CCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDW-PHKAESK----SYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~-p~k~~~~----~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..|-|-|-|.. ....+.++|++||+|.... ..+.... .......+..|.|+++.+|++||+....
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~ 76 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGT 76 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCe
Confidence 3557888899988 5677888999999998543 1111000 0113457999999999999999976543
No 162
>KOG1855|consensus
Probab=94.44 E-value=0.045 Score=54.56 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecC---C--CCCCc--------ceEEEEEecCHHHHHHHHH
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTD---P--ELKYP--------KGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D---~--~tg~p--------kGfgfVtF~~~esa~kAi~ 222 (320)
+.+||.+-|||.+-.-+.|.+||+. +|.|..|+|..= + ..+.+ |-+|+|.|.+.++|.||.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 5799999999999999999999998 999999999654 2 23333 4569999999999999975
No 163
>KOG2193|consensus
Probab=94.31 E-value=0.023 Score=56.54 Aligned_cols=136 Identities=17% Similarity=0.247 Sum_probs=93.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCCc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTI 133 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~~ 133 (320)
.|+|+|+|.+.++..+|+..|..- . .+.. ..----.||+||...++.-+.+|++..++... +
T Consensus 2 nklyignL~p~~~psdl~svfg~a---k--~~~~---g~fl~k~gyafvd~pdq~wa~kaie~~sgk~e-----l----- 63 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA---K--IPGS---GQFLVKSGYAFVDCPDQQWANKAIETLSGKVE-----L----- 63 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc---c--CCCC---cceeeecceeeccCCchhhhhhhHHhhchhhh-----h-----
Confidence 489999999999999999999753 1 0100 00011359999999999999999998765310 1
Q ss_pred cCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEE-ecCCCCCCcceEEEEEec
Q psy11409 134 KDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGI-DTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 134 ~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I-~~D~~tg~pkGfgfVtF~ 212 (320)
.+|+.++.-. . +.....+++=+.|+|.-+-++-|..+..+ ||.|+.+.. .+|++| -.--|||.
T Consensus 64 qGkr~e~~~s--------v---~kkqrsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~~et----avvnvty~ 127 (584)
T KOG2193|consen 64 QGKRQEVEHS--------V---PKKQRSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTDSET----AVVNVTYS 127 (584)
T ss_pred cCceeeccch--------h---hHHHHhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccchHH----HHHHHHHH
Confidence 1222222100 0 01112467899999999999999999999 999998875 366554 22347788
Q ss_pred CHHHHHHHHHh
Q psy11409 213 SQASYIAAISA 223 (320)
Q Consensus 213 ~~esa~kAi~~ 223 (320)
+.+.+.-||..
T Consensus 128 ~~~~~~~ai~k 138 (584)
T KOG2193|consen 128 AQQQHRQAIHK 138 (584)
T ss_pred HHHHHHHHHHh
Confidence 88888888754
No 164
>KOG4849|consensus
Probab=93.86 E-value=0.049 Score=53.16 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=50.4
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCC--eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGG--VCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~--V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
..+|||||-|-+|++||-+.... -|- +.+++.--.+..|.+||||.|...++.++++.++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHH
Confidence 57999999999999999888765 454 4555666778899999999999999999888865
No 165
>KOG0115|consensus
Probab=93.73 E-value=0.056 Score=50.69 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=55.2
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
...|+|-||+.-++.+.|...|++||+|.......|. .+++.|=++|.|...-++.+|+..|.+.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~---r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD---RGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc---cccccccchhhhhcchhHHHHHHHhccC
Confidence 3689999999999999999999999999843333333 3788899999999999999999999654
No 166
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.34 E-value=0.24 Score=42.91 Aligned_cols=64 Identities=27% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCC-----ccchHH----HHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccc
Q psy11409 159 DPRKTVFVGGVP-----RPLKAL----ELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQ 229 (320)
Q Consensus 159 ~~~~tVFVGnLp-----~~~Tee----dL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~ 229 (320)
+|..||-|.=+. ....++ +|-+.|++ ||.|.-|++.-|. . .|||.+-++|.+|++...++|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv~~~-m-------wVTF~dg~sALaals~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFVGDT-M-------WVTFRDGQSALAALSLDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEETTC-E-------EEEESSCHHHHHHHHGCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEeCCe-E-------EEEECccHHHHHHHccCCcEEC
Confidence 456788886666 233343 67888998 9999999999884 2 8999999999999998887776
Q ss_pred cC
Q psy11409 230 HG 231 (320)
Q Consensus 230 ~~ 231 (320)
+.
T Consensus 96 g~ 97 (146)
T PF08952_consen 96 GR 97 (146)
T ss_dssp TE
T ss_pred CE
Confidence 43
No 167
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.93 E-value=0.093 Score=41.71 Aligned_cols=69 Identities=25% Similarity=0.380 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHhCccC--CCceE--EEecCCCc--cCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccc
Q psy11409 100 AFLLFQDESSVQQLIDACIVD--EDKCY--LCVSSPTI--KDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPL 173 (320)
Q Consensus 100 gFV~F~~eesv~kaL~~~~~~--~~~~~--vkis~~~~--~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~ 173 (320)
|.|+|++++-|+++++...+. .++.. ++++ |-+ .....|+.. .-..+||-|.|||..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~-P~~~~~~~k~qv~~---------------~vs~rtVlvsgip~~l 64 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS-PVTLGHLQKFQVFS---------------GVSKRTVLVSGIPDVL 64 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE-eEecCCceEEEEEE---------------cccCCEEEEeCCCCCC
Confidence 579999999999999876653 12222 2221 111 112222221 1246899999999999
Q ss_pred hHHHHHHHHhh
Q psy11409 174 KALELAMIMDR 184 (320)
Q Consensus 174 TeedL~~~F~~ 184 (320)
++|+|.+..+=
T Consensus 65 ~ee~l~D~LeI 75 (88)
T PF07292_consen 65 DEEELRDKLEI 75 (88)
T ss_pred ChhhheeeEEE
Confidence 99999877653
No 168
>KOG2314|consensus
Probab=92.93 E-value=0.13 Score=53.03 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCcEEEcCCCCC--CC----HHHHHHHhccCCCeE-EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 53 SPPQFPLQGTPH--YD----HEEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 53 ~~kvFVGgLp~d--vt----Ee~L~~~Fs~FG~V~-v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
..-|+|-|+|-- .. ..-|...|+++|+|. ...|..+. |..+||.|+.|.+..+|+.|++..++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccc
Confidence 457999999842 22 245678899999998 56675543 569999999999999999999988764
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.85 E-value=0.18 Score=49.14 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCeEEEcCCCccchHHH----H--HHHHhhhCCCeeEEEEecCCCC--CCc-ceEE--EEEecCHHHHHHHHHhcccccc
Q psy11409 161 RKTVFVGGVPRPLKALE----L--AMIMDRLYGGVCYAGIDTDPEL--KYP-KGAG--RVAFASQASYIAAISARFVQLQ 229 (320)
Q Consensus 161 ~~tVFVGnLp~~~Teed----L--~~~F~~~fG~V~~v~I~~D~~t--g~p-kGfg--fVtF~~~esa~kAi~~~~~~i~ 229 (320)
..-|||-|||..+-+|+ | .++|++ ||+|..+. ..++| ..+ -|.+ ++||.+.|+|.+||.. |+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIv--vNkkt~s~nst~~h~gvYITy~~kedAarcIa~----vD 186 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIV--VNKKTSSLNSTASHAGVYITYSTKEDAARCIAE----VD 186 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhh-ccceeEEE--ecccccccccccccceEEEEecchHHHHHHHHH----hc
Confidence 45699999999998888 3 689999 99996554 44444 111 2323 8999999999999985 44
Q ss_pred cCccceEE
Q psy11409 230 HGEIDKRV 237 (320)
Q Consensus 230 ~~~~~k~v 237 (320)
+.-.+.++
T Consensus 187 gs~~DGr~ 194 (480)
T COG5175 187 GSLLDGRV 194 (480)
T ss_pred cccccCce
Confidence 44444444
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=92.57 E-value=0.58 Score=37.99 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=42.6
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEE-EecCCC------CCCcceEEEEEecCHHHHHHHHHhcccccc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAG-IDTDPE------LKYPKGAGRVAFASQASYIAAISARFVQLQ 229 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~-I~~D~~------tg~pkGfgfVtF~~~esa~kAi~~~~~~i~ 229 (320)
..-|-|-|.|.. ....+-++|++ ||.|.+.. +..+.. .-.....-.|+|+++.+|.+||...-..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 356888899999 55677789999 99998775 111100 011246788999999999999976444443
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.44 E-value=0.69 Score=34.39 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=44.6
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhC---CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLY---GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~f---G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+|.|.||.. ++-+|+..+|.. | .....|+.+-|. .+-|.|.+.+.|.+|+.+
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~-y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSE-YFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHH-hcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 4799999965 577899999998 7 246789999895 789999999999999864
No 172
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=92.10 E-value=0.45 Score=37.73 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=34.8
Q ss_pred CeEEEcCCCccchHHH----HHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALE----LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~Teed----L~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..|+|.|||-+.+... |+++++..=|+|..|. .|.|.|-|.+++.|.+|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KR 58 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKR 58 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHh
Confidence 4689999999988766 5566666225587762 38899999999999999764
No 173
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.29 E-value=0.78 Score=36.37 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=36.7
Q ss_pred cEEEcCCCCCCCHHHHHHHhc----cCC-CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 55 PQFPLQGTPHYDHEEITASFR----RFG-PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs----~FG-~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
-|+|.|||-+.+-..++.-.+ -+| .|..+ +.|-|+|-|.+++.|++|......+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------------~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------------SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------------eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 589999999999877666555 554 45431 3478999999999999999877654
No 174
>KOG3152|consensus
Probab=90.71 E-value=0.19 Score=47.28 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=47.0
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCC--------CCcceE----EEEEecCHHHHHHHHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPEL--------KYPKGA----GRVAFASQASYIAAIS 222 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~t--------g~pkGf----gfVtF~~~esa~kAi~ 222 (320)
--||+++||+.+.-.-|++||++ ||.|-.|.+.....+ |..++. |.|.|.+...|..+.+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe 146 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE 146 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 35999999999999999999998 999999998877655 222221 5678887777766654
No 175
>KOG4307|consensus
Probab=90.29 E-value=0.66 Score=49.15 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=51.1
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCee-EEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVC-YAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~-~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+-|=|-|+|+++|=+|+-++|.+ |-.+- +|.|-.. +.|.|.|=+.|.|++.+.|..|...
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~d-Y~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~d 928 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFND-YEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMD 928 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcc-cccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhc
Confidence 35778999999999999999999 96653 4555555 7999999999999999999999653
No 176
>KOG0112|consensus
Probab=90.16 E-value=0.067 Score=57.58 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHH
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAA 220 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kA 220 (320)
.+.|||+|||+..+++.+|+..|++ +|.|..|.|.+=+ -+.---+|||.|.+-..+-.|
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~a 429 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSA 429 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhh-hccccccccccCC-CCcccchhhhhhhccccCccc
Confidence 4589999999999999999999998 9999999888763 444456788999887776666
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.79 E-value=1 Score=35.60 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=40.9
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+.-||-=..|..+.-.||.++|+. ||.| .|.-+-| ..|||...+++.+..|+..
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFsp-fG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSP-FGQI-YVSWIND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCC-CCCE-EEEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred cceEEEEeCchHhhhhhHHHHhcc-CCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence 345777669999999999999999 9998 4666666 3899999999999887653
No 178
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.00 E-value=0.6 Score=41.54 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=40.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhcc-CCCeEE--ecccccCCCCCC-CCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRR-FGPLVV--DWPHKAESKSYF-PPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~-FG~V~v--~~p~k~~~~~tg-~skGygFV~F~~eesv~kaL~~~~ 118 (320)
...||-|..||+++||+++.+..+. +|.-.. -+.......... ..-.-|||.|.+.+++....+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 3569999999999999999998887 666621 111111111111 123569999999999988887654
No 179
>KOG2068|consensus
Probab=88.39 E-value=0.41 Score=46.50 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=47.2
Q ss_pred CcEEEcCCCCCCCHHHHH---HHhccCCCeEEecccccCC--CCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 54 PPQFPLQGTPHYDHEEIT---ASFRRFGPLVVDWPHKAES--KSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~---~~Fs~FG~V~v~~p~k~~~--~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
+.+||-||+.+..++.+. ++|++||.|..+...++.. ...+.+-. +||+|+.+++|..+|+.++..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s-~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCS-VYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCc-ccccccchHhhhhHHHHhhhH
Confidence 578999999887665553 5899999998554444331 11122222 899999999999999988764
No 180
>KOG2193|consensus
Probab=87.34 E-value=0.51 Score=47.36 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=47.0
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|+|||....|..||..+|.+ +.|......-.--|++||...+..-+.+||++
T Consensus 2 nklyignL~p~~~psdl~svfg~-------ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~ 56 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGD-------AKIPGSGQFLVKSGYAFVDCPDQQWANKAIET 56 (584)
T ss_pred CcccccccCCCCChHHHHHHhcc-------ccCCCCcceeeecceeeccCCchhhhhhhHHh
Confidence 36899999999999999999998 25555555555679999999999999999986
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.23 E-value=0.99 Score=35.89 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=33.9
Q ss_pred EEEEecCHHHHHHHHHhcccccccCccceEEEecccc
Q psy11409 207 GRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYV 243 (320)
Q Consensus 207 gfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~ 243 (320)
|.|||.+.+-|.+.+..+.+.+.-.+..-+|+++||.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~ 37 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVT 37 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEe
Confidence 6799999999999999999998887888899999995
No 182
>KOG4676|consensus
Probab=83.63 E-value=1.5 Score=43.68 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=57.3
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEec--C-CCCCCcceEEEEEecCHHHHHHHHH-hcccccccCccceEE
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDT--D-PELKYPKGAGRVAFASQASYIAAIS-ARFVQLQHGEIDKRV 237 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~--D-~~tg~pkGfgfVtF~~~esa~kAi~-~~~~~i~~~~~~k~v 237 (320)
.-|=|.||.+.+|.+++..+|+- .|+|..+.+.- | -.-....-.+||-|.|..++..|-- +.+++|+ .-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd-----ral 81 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD-----RAL 81 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee-----eeE
Confidence 36889999999999999999998 89999998874 2 2222335779999999999888721 2233343 344
Q ss_pred Eeccccccccc
Q psy11409 238 EVKPYVLDDQM 248 (320)
Q Consensus 238 ~ikpy~~~~~~ 248 (320)
-|.|| ++...
T Consensus 82 iv~p~-~~~~~ 91 (479)
T KOG4676|consen 82 IVRPY-GDEVI 91 (479)
T ss_pred EEEec-CCCCC
Confidence 56677 35433
No 183
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=83.36 E-value=1.8 Score=38.55 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCe---eEEE-EecCCCCCCcc-eEEEEEecCHHHHHHHHHh--cccccccCcc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGV---CYAG-IDTDPELKYPK-GAGRVAFASQASYIAAISA--RFVQLQHGEI 233 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V---~~v~-I~~D~~tg~pk-GfgfVtF~~~esa~kAi~~--~~~~i~~~~~ 233 (320)
..+|-|..||+.+|++++.+.++..++.- .++. -..+..++.+. .-|+|.|.+.+++..-... .+..++..+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 46899999999999999999666534554 3444 22233344433 4589999999986665543 2244544333
Q ss_pred --ceEEEeccc
Q psy11409 234 --DKRVEVKPY 242 (320)
Q Consensus 234 --~k~v~ikpy 242 (320)
.-.|+.-||
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 336688888
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=82.48 E-value=4.3 Score=35.33 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=43.4
Q ss_pred CCCCeEEEcCCCccch-HHHHHH---HHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLK-ALELAM---IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~T-eedL~~---~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.|=.||.|.=|..++. .+||+. -++. ||.|.+|+.. .|-.|.|+|.+-.||=+|+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~A 144 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLC-------GRQSAVVVFKDITSACKAVSA 144 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeec-------CCceEEEEehhhHHHHHHHHh
Confidence 3457999987766653 455554 4566 9999999654 356899999999999999976
No 185
>KOG3152|consensus
Probab=82.35 E-value=0.76 Score=43.27 Aligned_cols=66 Identities=6% Similarity=0.037 Sum_probs=47.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCC------CCCCCcc----eEEEEeCCHHHHHHHHHhCcc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESK------SYFPPKG----YAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~------~tg~skG----ygFV~F~~eesv~kaL~~~~~ 119 (320)
.=||+++||+.++-.-|+++|++||.|=-+....+... ..|.+++ =|.|.|.+...|+++....+.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 46999999999999999999999999975444333210 1122222 267899999888877766554
No 186
>KOG2202|consensus
Probab=81.09 E-value=0.83 Score=42.96 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHhc-cCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 68 EEITASFR-RFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 68 e~L~~~Fs-~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+++...|+ +||+|+...+-+. ..-.-+|-+||.|..++++++|++..+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N---l~~hl~GNVYV~f~~Ee~ae~a~~~ln 131 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN---LGDHLVGNVYVKFRSEEDAEAALEDLN 131 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc---cchhhhhhhhhhcccHHHHHHHHHHHc
Confidence 34444555 8999985322221 112457999999999999999998765
No 187
>KOG2253|consensus
Probab=80.68 E-value=1.6 Score=45.94 Aligned_cols=58 Identities=28% Similarity=0.275 Sum_probs=50.7
Q ss_pred CCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 155 SMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 155 ~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
.++..+..+|||||+..-+..+-+..+... .|.|-+..++. |||..|........|+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r 91 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK---------FGFCEFLKHIGDLRASR 91 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh---------hcccchhhHHHHHHHHH
Confidence 356677899999999999999999999998 99997776554 99999999999998864
No 188
>KOG2068|consensus
Probab=80.11 E-value=1.1 Score=43.49 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=48.5
Q ss_pred CCeEEEcCCCccchHHHH---HHHHhhhCCCeeEEEEecCCCCCCc---ceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALEL---AMIMDRLYGGVCYAGIDTDPELKYP---KGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL---~~~F~~~fG~V~~v~I~~D~~tg~p---kGfgfVtF~~~esa~kAi~~ 223 (320)
+.-+||-+||..+.++.+ .++|.+ ||+|..|.+-.|+.+-.+ --.++|||..+++|..||..
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~ 144 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD 144 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH
Confidence 356999999988877665 579998 999999999988731111 12379999999999999864
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=78.91 E-value=4.4 Score=35.26 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=46.1
Q ss_pred CcEEEcCCCCCCC-HHH---HHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 54 PPQFPLQGTPHYD-HEE---ITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 54 ~kvFVGgLp~dvt-Ee~---L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
.+|.|.=|..++. .++ +..-.+.||+|..+.+.. |--|.|+|+|-.||=+|+.+.....-+..+.+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---------CceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 5888887776664 344 445567899999765532 34699999999999999998765433333333
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=77.63 E-value=5.6 Score=34.55 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCcEEEcCCCCC------CCH---HHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCc
Q psy11409 53 SPPQFPLQGTPH------YDH---EEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDK 123 (320)
Q Consensus 53 ~~kvFVGgLp~d------vtE---e~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~ 123 (320)
..+|-|.=+.++ .++ .+|.+.|++||+|.-..... +--.|+|.+-++|-+||+......++
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----------~~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----------DTMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----------TCEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----------CeEEEEECccHHHHHHHccCCcEECC
Confidence 457777555522 222 37889999999988543322 45899999999999999886655455
Q ss_pred eEEEe
Q psy11409 124 CYLCV 128 (320)
Q Consensus 124 ~~vki 128 (320)
..+++
T Consensus 97 ~~l~i 101 (146)
T PF08952_consen 97 RTLKI 101 (146)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 191
>KOG2253|consensus
Probab=74.29 E-value=3.1 Score=43.91 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=95.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEE
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYL 126 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~v 126 (320)
.-+..++||||+...+..+-++.....+|-|.. |+.. + |||..|.+......|+..++.. +.++..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s-~kr~---------~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPS-WKRD---------K-FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchh-hhhh---------h-hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 345679999999999999999999999999985 4421 1 9999999999988888877653 234444
Q ss_pred EecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE
Q psy11409 127 CVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA 206 (320)
Q Consensus 127 kis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf 206 (320)
+++-.++..+.- |........ .+-.+....+-.+++++|..+.+......+.- -+......-..+. .+.-+-+
T Consensus 106 ~~d~q~~~n~~k----~~~~~~~~~-~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i-s~s~~s~~~~~e~-d~h~~e~ 178 (668)
T KOG2253|consen 106 NVDEQTIENADK----EKSIANKES-HKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI-SSSAASRRQIAEA-DDHCLEL 178 (668)
T ss_pred cchhhhhcCccc----cccchhhhh-cccCCchhHHHHHhhccccchhHHHHHHHHhc-cchhhhhhhhHHH-HHHHHHH
Confidence 433222221110 000000000 00111122577999999999988888888864 5665555555442 3333445
Q ss_pred EEEEecCHHHHHHHHH
Q psy11409 207 GRVAFASQASYIAAIS 222 (320)
Q Consensus 207 gfVtF~~~esa~kAi~ 222 (320)
+|-+|....++.++..
T Consensus 179 ~~~~~~s~~~~~~~~~ 194 (668)
T KOG2253|consen 179 EKTETESNSALSKEAE 194 (668)
T ss_pred HHhhcccccccCcccc
Confidence 5555555555544443
No 192
>KOG2416|consensus
Probab=71.37 E-value=3.6 Score=43.04 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=52.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhcc-CCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRR-FGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~-FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
..+++-|+|.||-.-.|.-.|+++..+ .|.|+..|+-++. .-|||.|.+.+.|-+...+.++.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--------ShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--------SHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--------cceeEecccHHHHHHHHHHHhcc
Confidence 345778999999999999999999995 6777778996643 46999999999998888777653
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.15 E-value=13 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=34.9
Q ss_pred cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 172 PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 172 ~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+|-++++..+.. |+-. +|..|+ .|| ||.|.|.+.|++|...
T Consensus 11 ~~~v~d~K~~Lr~-y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~ 52 (66)
T PF11767_consen 11 GVTVEDFKKRLRK-YRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRA 52 (66)
T ss_pred CccHHHHHHHHhc-CCcc---eEEecC-----CEE-EEEECChHHHHHHHHh
Confidence 4688999999998 8654 788886 466 8999999999999764
No 194
>KOG2891|consensus
Probab=70.32 E-value=4.6 Score=38.75 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=58.4
Q ss_pred ceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC--CccCCCccc---cccccCCcccccC-----CCCCCCCCCeEEEc
Q psy11409 98 GYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP--TIKDKPVQI---RPWKLTDADFVLD-----ASMPLDPRKTVFVG 167 (320)
Q Consensus 98 GygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~--~~~~K~vqv---rPw~~~d~~y~~~-----~~~~~~~~~tVFVG 167 (320)
-.-||.|+-+-.-.-+++....-.++.-+++|+= ..+.|.... -|.+-...++.++ ...+.....||+..
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la 155 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLA 155 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeec
Confidence 4679999987666555554433345666777641 111111111 1222111222222 12345555789999
Q ss_pred CCCccc------------hHHHHHHHHhhhCCCeeEEEEec
Q psy11409 168 GVPRPL------------KALELAMIMDRLYGGVCYAGIDT 196 (320)
Q Consensus 168 nLp~~~------------TeedL~~~F~~~fG~V~~v~I~~ 196 (320)
+||-.| +++-|+..|+. ||.|..|.|++
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~ea-fg~ir~vdipi 195 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEA-FGEIRNVDIPI 195 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHH-hccceecCCcc
Confidence 998543 56789999998 99999999985
No 195
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=69.36 E-value=11 Score=31.52 Aligned_cols=127 Identities=11% Similarity=0.032 Sum_probs=69.8
Q ss_pred cEEEcCCC--CCCCHHHHHHHhc----cCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 55 PQFPLQGT--PHYDHEEITASFR----RFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 55 kvFVGgLp--~dvtEe~L~~~Fs----~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
...||.+. .+++-..|...+. ..|.+.+. .-..|+.-+.|.++++++++++......++
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~----------~l~~~~fl~~F~~~~d~~~vl~~~p~~~~~----- 81 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIR----------DLGDNLFLFQFESEEDRQRVLKGGPWNFNG----- 81 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEE----------EeCCCeEEEEEEeccceeEEEecccccccc-----
Confidence 44555553 2445555555554 44555531 124589999999999999988643322222
Q ss_pred cCCCccCCCccccccccCCcccccCCCCCC-CCCCeEEEcCCCcc-chHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE
Q psy11409 129 SSPTIKDKPVQIRPWKLTDADFVLDASMPL-DPRKTVFVGGVPRP-LKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA 206 (320)
Q Consensus 129 s~~~~~~K~vqvrPw~~~d~~y~~~~~~~~-~~~~tVFVGnLp~~-~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf 206 (320)
..+.+.+|...... ..... ...--|=|-|||.. .+++-|+.+-+. +|.+..+...+. ......|
T Consensus 82 -------~~~~l~~W~~~~~~----~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t~--~~~~~~~ 147 (153)
T PF14111_consen 82 -------HFLILQRWSPDFNP----SEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENTL--KRTRLDF 147 (153)
T ss_pred -------cchhhhhhcccccc----cccceeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCCC--CcccccE
Confidence 23334455421100 00000 01122455799998 566678888887 999977644333 2233456
Q ss_pred EEEE
Q psy11409 207 GRVA 210 (320)
Q Consensus 207 gfVt 210 (320)
++|.
T Consensus 148 ~Rv~ 151 (153)
T PF14111_consen 148 ARVR 151 (153)
T ss_pred EEEE
Confidence 7663
No 196
>KOG2202|consensus
Probab=68.85 E-value=3.5 Score=38.83 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=48.8
Q ss_pred HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccce-EE--Eecccc-cccccccc
Q psy11409 176 LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDK-RV--EVKPYV-LDDQMCDE 251 (320)
Q Consensus 176 edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k-~v--~ikpy~-~~~~~c~~ 251 (320)
||+..-|++.||.|+.+.|-... --.-+|-.+|.|..+++|++|++. |++.++.+ .| +.=|-. +++..|.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~----lnnRw~~G~pi~ae~~pvT~~rea~C~~ 157 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALED----LNNRWYNGRPIHAELSPVTDFREAICGQ 157 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHH----HcCccccCCcceeeecCcCchhhhhhcc
Confidence 55656666449999998665442 334489999999999999999874 55555532 22 333322 35566655
Q ss_pred ccCccc
Q psy11409 252 CQGVRC 257 (320)
Q Consensus 252 c~~~~~ 257 (320)
-....|
T Consensus 158 ~e~~~C 163 (260)
T KOG2202|consen 158 FERTEC 163 (260)
T ss_pred cccccC
Confidence 444444
No 197
>KOG1996|consensus
Probab=66.75 E-value=13 Score=36.05 Aligned_cols=47 Identities=23% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhCCCeeEEEEecCCCCCCcceE-EEEEecCHHHHHHHHH
Q psy11409 175 ALELAMIMDRLYGGVCYAGIDTDPELKYPKGA-GRVAFASQASYIAAIS 222 (320)
Q Consensus 175 eedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf-gfVtF~~~esa~kAi~ 222 (320)
++++++-.++ ||.|..|-|-.++..-...-. -||.|...+++.||+-
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~V 347 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVV 347 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHH
Confidence 5677888998 999999999988644444333 5999999999999963
No 198
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=63.80 E-value=4.7 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=27.0
Q ss_pred cccccccccCcccCCCcccccCCccchhhhcchhhhhhhhCC
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSK 286 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~~ 286 (320)
+..+|..|.+ ..+.|||.+ |-...|..|....|..
T Consensus 2 ~~~~C~~H~~-----~~~~~~C~~--C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 2 QEPKCPEHPE-----EPLSLFCED--CNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSSB-SSTTT-----SBEEEEETT--TTEEEEHHHHHTSTTT
T ss_pred cCccCccCCc-----cceEEEecC--CCCccCccCCCCCCCC
Confidence 3567877776 358999964 8899999999998864
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=62.47 E-value=57 Score=26.87 Aligned_cols=59 Identities=12% Similarity=-0.090 Sum_probs=45.4
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
..+-+...|..++.++|..+.+..-..|..++|.+|. ...+=.+-+.|.+.++|+.=..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~ 72 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYE 72 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHH
Confidence 4455588888888899988888755678999999984 2345578899999999877543
No 200
>KOG2416|consensus
Probab=62.05 E-value=7.3 Score=40.87 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=49.9
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..++.-|+|.||=+..|.-+|+.++.++.|.|+.. -+|+ -|--+||+|.+.+.|...+.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHH
Confidence 34557799999999999999999999878888877 4553 367899999999998877655
No 201
>KOG2591|consensus
Probab=61.56 E-value=21 Score=37.39 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=46.1
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhcc--CCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRR--FGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~--FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
..+....=|.+..||.++-.|+++.+|+- +-++..|-..- ..+ =||+|+++.+|+.|.....++
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--------N~n-WyITfesd~DAQqAykylree 235 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--------NDN-WYITFESDTDAQQAYKYLREE 235 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--------cCc-eEEEeecchhHHHHHHHHHHH
Confidence 34444556777889999999999999974 55555543321 122 599999999999998766554
No 202
>KOG2891|consensus
Probab=60.97 E-value=8.6 Score=36.95 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=29.4
Q ss_pred CCcEEEcCCC--CC----------CCHHHHHHHhccCCCeE-EecccccC
Q psy11409 53 SPPQFPLQGT--PH----------YDHEEITASFRRFGPLV-VDWPHKAE 89 (320)
Q Consensus 53 ~~kvFVGgLp--~d----------vtEe~L~~~Fs~FG~V~-v~~p~k~~ 89 (320)
.-+|++.||| |- -+|+-|+..|+.||+|. +++|+-+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdp 198 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDP 198 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccch
Confidence 4589999988 32 46889999999999998 57777654
No 203
>KOG0119|consensus
Probab=49.36 E-value=8.3 Score=39.61 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=53.2
Q ss_pred EEEEEecCHHHHHHHHHhcccccc------cCcc-ceEE------Eeccccccc--cccccccCcccCCCcccccCCcc-
Q psy11409 206 AGRVAFASQASYIAAISARFVQLQ------HGEI-DKRV------EVKPYVLDD--QMCDECQGVRCGGKFAPFFCANV- 269 (320)
Q Consensus 206 fgfVtF~~~esa~kAi~~~~~~i~------~~~~-~k~v------~ikpy~~~~--~~c~~c~~~~~~~~~~~y~c~~~- 269 (320)
.+.|+=++.|.+++||+.--..|. .... -++. +..+-+.++ ..|..|+.. +|-.|.|+++
T Consensus 206 H~~Isadt~eki~~Ai~vienli~~av~~~e~~n~l~~~Qlrela~lNgt~r~~d~~~c~~cg~~----~H~q~~cp~r~ 281 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIENLIQSAVSVPEGQNDLKRLQLRELARLNGTLRDDDNRACRNCGST----GHKQYDCPGRI 281 (554)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHHhCCCCCccccccccccCCC----ccccccCCccc
Confidence 578999999999999865322222 1111 1222 333443333 599999997 7899999988
Q ss_pred chhhhcchhhhhhhhCCCCC
Q psy11409 270 CCLQYYCEHCWATIHSKPGR 289 (320)
Q Consensus 270 ~c~~y~c~~cw~~~h~~~~~ 289 (320)
.=++--|..||..-|..-+.
T Consensus 282 ~~~~n~c~~cg~~gH~~~dc 301 (554)
T KOG0119|consen 282 PNTTNVCKICGPLGHISIDC 301 (554)
T ss_pred ccccccccccCCcccccccC
Confidence 33344899999999987543
No 204
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=48.32 E-value=49 Score=25.55 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=43.1
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi 221 (320)
+-|+-.++...|..++++.++++||- |..|....=+ .++ ==|+|++...+.|....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~--KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGE--KKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--eEEEEEECCCCcHHHHH
Confidence 46777889999999999999999985 8888877664 111 23899998877776653
No 205
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.14 E-value=57 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=43.7
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi 221 (320)
+-|+--++...|..++++.++.+||- |.+|....=+ .+ .==|+|++...+.|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHH
Confidence 46666789999999999999999986 8888887765 11 123899998888777654
No 206
>KOG2135|consensus
Probab=46.82 E-value=12 Score=38.37 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q psy11409 174 KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222 (320)
Q Consensus 174 TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~ 222 (320)
|-++|-.+|.+ ||.|+.+.|... .-.|.|||.+...|-+|..
T Consensus 386 t~a~ln~hfA~-fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~ 427 (526)
T KOG2135|consen 386 TIADLNPHFAQ-FGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA 427 (526)
T ss_pred hHhhhhhhhhh-cCccccccccCc------hhhheeeeeccccccchhc
Confidence 56889999999 999998876554 4578999999999866643
No 207
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.42 E-value=25 Score=26.15 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.5
Q ss_pred HHHHHHhccCCCeEEecc
Q psy11409 68 EEITASFRRFGPLVVDWP 85 (320)
Q Consensus 68 e~L~~~Fs~FG~V~v~~p 85 (320)
++||++|++.|+|.+..+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999997544
No 208
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.58 E-value=52 Score=27.27 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecC-HHHHHHHHH
Q psy11409 174 KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFAS-QASYIAAIS 222 (320)
Q Consensus 174 TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~-~esa~kAi~ 222 (320)
+.++|.+.|.. |..+. |+...++ .-+.|++.|.|.+ -.-+..|+.
T Consensus 30 ~~~~l~~~l~~-f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAE-FNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH----SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHh-cCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45899999999 99985 7777774 3778999999974 455566643
No 209
>KOG4574|consensus
Probab=42.76 E-value=17 Score=39.69 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=71.7
Q ss_pred hcCCCCCccCCCCcchhhHHHHHHhhhhcCCCCCCCccc----cCC----CC-CCcEEEcCCCCCCCHHHHHHHhccCCC
Q psy11409 9 LGGRSPYISAGLDDASLLDDFLLLLSRALVPNLGPNDIL----KLS----FP-SPPQFPLQGTPHYDHEEITASFRRFGP 79 (320)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~----~~~----~~-~~kvFVGgLp~dvtEe~L~~~Fs~FG~ 79 (320)
.|-++||.++-..|+-.-.-.+=..++..+|-.+.--.+ ..+ +| ..+..+-+.+-..+...|..+|++||+
T Consensus 245 ~~pt~~~~sp~i~~~~dp~si~~~t~~~~vp~~nq~sal~ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~ 324 (1007)
T KOG4574|consen 245 FGPTLPYNSPPIGDPPDPSSINWNTSGSSVPFFNQISALLPTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGS 324 (1007)
T ss_pred cCCCCCCCCCCcCCCCCcccccccccCCcCccccchhhccccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcc
Confidence 355678888777665544444444444445532211000 011 11 357788899999999999999999999
Q ss_pred eEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 80 LVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 80 V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
|...|..++. -.+-|.|++.+++-.|+++..+.
T Consensus 325 v~s~wtlr~~--------N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 325 VASAWTLRDL--------NMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhheecccc--------cchhhhhHHHHHHHHhhhhhcCC
Confidence 9998886654 36899999999999999988764
No 210
>KOG4285|consensus
Probab=42.50 E-value=41 Score=32.76 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=46.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEE
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYL 126 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~v 126 (320)
+..|-|-|.|+.-. ..|...|++||+|....+. +.--|-+|.|.+.-.+++||+..... ++..+|
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--------~ngNwMhirYssr~~A~KALskng~ii~g~vmi 262 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMI 262 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--------CCCceEEEEecchhHHHHhhhhcCeeeccceEE
Confidence 56777778887543 4677899999999954332 22249999999999999999875543 234444
No 211
>KOG1996|consensus
Probab=40.28 E-value=55 Score=31.84 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=35.2
Q ss_pred HHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 67 HEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 67 Ee~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
|+++++-.++||.|.-+++..+.... ------.||.|+..+++.+|+-..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p-~deavRiFveF~r~e~aiKA~Vdln 350 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQP-EDEAVRIFVEFERVESAIKAVVDLN 350 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCc-cchhheeeeeeccHHHHHHHHHhcC
Confidence 56788889999999855444433211 1112348999999999999987654
No 212
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=37.97 E-value=12 Score=30.77 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=23.0
Q ss_pred cccccccCcccCCCcccccCCccchhhhcchhhhhhhhC
Q psy11409 247 QMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHS 285 (320)
Q Consensus 247 ~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~ 285 (320)
.+|..|+. -|-..+.. +|+|..||+-+-.
T Consensus 4 p~cp~c~s--------EytYed~~--~~~cpec~~ew~~ 32 (112)
T COG2824 4 PPCPKCNS--------EYTYEDGG--QLICPECAHEWNE 32 (112)
T ss_pred CCCCccCC--------ceEEecCc--eEeCchhcccccc
Confidence 57888987 47777776 9999999977663
No 213
>KOG2591|consensus
Probab=36.51 E-value=28 Score=36.48 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=42.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhh-hCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDR-LYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~-~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.-|.+.-||..+-.|+++-+|.- .+-++.+++....- ++ ||||.++.+|..|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nW-yITfesd~DAQqAyky 231 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NW-YITFESDTDAQQAYKY 231 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ce-EEEeecchhHHHHHHH
Confidence 34667999999999999999962 34567777666542 22 9999999999999654
No 214
>KOG4410|consensus
Probab=36.40 E-value=34 Score=33.09 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=38.7
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHH
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 110 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv 110 (320)
.-|+++|||.|+.-.+|+....+-|.+- +.. ...-++|-+|+.|.+...|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p----m~i---swkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP----MSI---SWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc----eeE---eeecCCcceeEecCCccCC
Confidence 4699999999999999999999876553 221 1234788999999987654
No 215
>KOG4285|consensus
Probab=34.70 E-value=1.5e+02 Score=28.99 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=49.9
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEecc
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKP 241 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikp 241 (320)
.=|=|-|.|..- ..-+-.+|++ ||.|++.... ..--+=.|.|.++-.|.|||+..-..|++ ...|=|||
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~-cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g---~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSR-CGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDG---DVMIGVKP 266 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHh-hCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeecc---ceEEeeee
Confidence 345555888774 4556688999 9999877543 11246789999999999999865444433 35667788
Q ss_pred cc
Q psy11409 242 YV 243 (320)
Q Consensus 242 y~ 243 (320)
.+
T Consensus 267 Ct 268 (350)
T KOG4285|consen 267 CT 268 (350)
T ss_pred cC
Confidence 74
No 216
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=34.30 E-value=8.4 Score=27.60 Aligned_cols=35 Identities=23% Similarity=0.570 Sum_probs=21.1
Q ss_pred cccccccccCcccCCCcccccCCccchhhhcchhhhhhh
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATI 283 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~ 283 (320)
-.-.||.|+.+ ....=.=.-..|-+.-|.+||+.-
T Consensus 6 sry~CDLCn~~----~p~~~LRQCvlCGRWaC~sCW~de 40 (57)
T PF14445_consen 6 SRYSCDLCNSS----HPISELRQCVLCGRWACNSCWQDE 40 (57)
T ss_pred hhHhHHhhccc----CcHHHHHHHhhhchhhhhhhhhhh
Confidence 34568888886 112211123467788888888753
No 217
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.59 E-value=46 Score=31.61 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=28.3
Q ss_pred EEEEecCHHHHHHHHHhcccccccCccceEEEecccccccccccccc
Q psy11409 207 GRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDECQ 253 (320)
Q Consensus 207 gfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~~~~c~~c~ 253 (320)
|||||++.++|..|++..- ......-+++.-|- |+|-.++--+
T Consensus 1 aFVtF~~~~~a~~~~q~~~---~~~~~~~~v~~APe-P~DI~W~NL~ 43 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL---SKRPNSWRVSPAPE-PDDIIWENLS 43 (325)
T ss_pred CEEEECCHHHHHHHHHHHh---cCCCCCceEeeCCC-cccccccccC
Confidence 7999999999999987321 11112226667776 7777665443
No 218
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=32.52 E-value=1.7e+02 Score=20.32 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=43.7
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCH----HHHHHHHHh
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQ----ASYIAAISA 223 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~----esa~kAi~~ 223 (320)
|+.|.|+.=.--+..+.+.+.. .-+|.++.+... .+-.-|+|... +.+.++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~-~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSK-LPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhc-CCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788899989899999999998 888999998877 36788888744 566666654
No 219
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=32.13 E-value=34 Score=28.35 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHH-HHHHHHhC
Q psy11409 65 YDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESS-VQQLIDAC 117 (320)
Q Consensus 65 vtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~ees-v~kaL~~~ 117 (320)
.+.++|++.|+.|.++++...-.. .-+.|++.|.|.+.-+ -+.|+.-.
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~-----~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGK-----QGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEET-----TEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCC-----CCCcEEEEEEECCChHHHHHHHHHH
Confidence 356899999999999985422221 2478999999988543 35555443
No 220
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=31.72 E-value=29 Score=32.75 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=29.7
Q ss_pred ccccccccccCcccCCCcccccCC------ccchhhhcchhhhhhhhCCC
Q psy11409 244 LDDQMCDECQGVRCGGKFAPFFCA------NVCCLQYYCEHCWATIHSKP 287 (320)
Q Consensus 244 ~~~~~c~~c~~~~~~~~~~~y~c~------~~~c~~y~c~~cw~~~h~~~ 287 (320)
+.|-+|..|... .|.=| +.-|+--+|++|-+++-+.+
T Consensus 8 ~~d~~CPvCksD-------rYLnPdik~linPECyHrmCESCvdRIFs~G 50 (314)
T COG5220 8 MEDRRCPVCKSD-------RYLNPDIKILINPECYHRMCESCVDRIFSRG 50 (314)
T ss_pred hhcccCCccccc-------cccCCCeEEEECHHHHHHHHHHHHHHHhcCC
Confidence 467799999986 45555 45699999999999998865
No 221
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=30.94 E-value=23 Score=26.64 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDR 184 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~ 184 (320)
.+++||||++|..+-++.=..++..
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHHH
Confidence 4689999999999988776555554
No 222
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=27.34 E-value=18 Score=25.64 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=2.2
Q ss_pred hhcchhhhhhh
Q psy11409 273 QYYCEHCWATI 283 (320)
Q Consensus 273 ~y~c~~cw~~~ 283 (320)
+|+|.+||...
T Consensus 2 r~nCKsCWf~~ 12 (50)
T PF03854_consen 2 RYNCKSCWFAN 12 (50)
T ss_dssp -----SS-S--
T ss_pred CccChhhhhcC
Confidence 47788888543
No 223
>KOG2135|consensus
Probab=27.27 E-value=31 Score=35.45 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=40.6
Q ss_pred cCCCCCC-CHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 59 LQGTPHY-DHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 59 GgLp~dv-tEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
--.|+.. |-++|..+|.+||+|..+-+.. +---|-|+|.+..++-.|-....-..+..++||
T Consensus 378 ek~~~glnt~a~ln~hfA~fG~i~n~qv~~--------~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 378 EKSPFGLNTIADLNPHFAQFGEIENIQVDY--------SSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKL 440 (526)
T ss_pred hccCCCCchHhhhhhhhhhcCccccccccC--------chhhheeeeeccccccchhccccceecCceeEE
Confidence 3345544 4689999999999999643322 233589999998888555544333345555555
No 224
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.19 E-value=68 Score=24.75 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 95 PPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 95 ~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.-+||.||+=.++..|..|++...+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 3689999999999999999976544
No 225
>PF11478 Tachystatin_B: Antimicrobial chitin binding protein tachystatin B; InterPro: IPR020957 Tachystatin B is an antimicrobial chitin binding peptide and consists of two isotopes B1 and B2. Both structures contain a short antiparallel beta sheet with an inhibitory cysteine knot motif. Tyr(14) and Arg(17) are thought to be the essential residues for chitin binding []. ; PDB: 2DCW_A 2DCV_A.
Probab=26.05 E-value=25 Score=23.32 Aligned_cols=11 Identities=45% Similarity=1.555 Sum_probs=8.2
Q ss_pred ccchhhhcchh
Q psy11409 268 NVCCLQYYCEH 278 (320)
Q Consensus 268 ~~~c~~y~c~~ 278 (320)
...||-|||+.
T Consensus 17 rsccfgyycrr 27 (42)
T PF11478_consen 17 RSCCFGYYCRR 27 (42)
T ss_dssp S-BSTTEEEEE
T ss_pred CceEeEEEEcc
Confidence 46799999973
No 226
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=25.10 E-value=1.8e+02 Score=23.06 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=31.0
Q ss_pred eEEEcCCCccchHHHHHHHHhhh--CCCeeEEEEec----CCCCCCcceEEEEEec
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRL--YGGVCYAGIDT----DPELKYPKGAGRVAFA 212 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~--fG~V~~v~I~~----D~~tg~pkGfgfVtF~ 212 (320)
..|+.|||..+-+.++...-..+ ++. .+.|.+ ........|++-+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~--~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGP--DVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCS--EEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCC--CeEEEEecccCccCCCCCceEEEEEE
Confidence 47999999999998875555442 443 445554 3456677888866553
No 227
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=24.76 E-value=1.3e+02 Score=26.96 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=33.4
Q ss_pred CHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 66 DHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 66 tEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..+.|+++|..|+.+..-.+.+ +-+=..|+|.+.++|.+|...++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--------sFrRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--------SFRRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--------TTTEEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhcCCceEEEEcC--------CCCEEEEEeCCHHHHHHHHHHhc
Confidence 3588999999999998544433 44569999999999999999877
No 228
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.33 E-value=66 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=29.3
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecC
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTD 197 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D 197 (320)
..++--++..+|-.|++++++++||- |.+|..+.=
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 46666789999999999999999997 778877654
No 229
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=24.29 E-value=1.7e+02 Score=27.74 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.9
Q ss_pred EEEEeCCHHHHHHHHHhCc
Q psy11409 100 AFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 100 gFV~F~~eesv~kaL~~~~ 118 (320)
|||+|+++++|+.+++...
T Consensus 1 aFVtF~~~~~a~~~~q~~~ 19 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL 19 (325)
T ss_pred CEEEECCHHHHHHHHHHHh
Confidence 7999999999999998644
No 230
>KOG4574|consensus
Probab=24.14 E-value=39 Score=37.11 Aligned_cols=55 Identities=27% Similarity=0.232 Sum_probs=47.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
-+..+-|.+-.+|-.-|+.++++ ||.|.++.-.+|- -.|-|.|...++|..|+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dA 353 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSD-YGSVASAWTLRDL------NMALVSFSSVESAILALDA 353 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHh-hcchhhheecccc------cchhhhhHHHHHHHHhhhh
Confidence 35567778888999999999999 9999999888774 5789999999999999876
No 231
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=24.13 E-value=1.9e+02 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecC
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTD 197 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D 197 (320)
+.|+--++..+|-.++++.++.+||- |..|....=
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 57888899999999999999999986 888887754
No 232
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.08 E-value=1e+02 Score=24.47 Aligned_cols=48 Identities=15% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCCcEEEcCCCCCCCH---HHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCC
Q psy11409 52 PSPPQFPLQGTPHYDH---EEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 106 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtE---e~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~ 106 (320)
....||||+++..+-| +.|.+.+.+=|.+...|... ...||.|-+..+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~-------~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSN-------TCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCC-------CCCCcEEEecCC
Confidence 4568999998877755 34444433338888777744 245899988766
No 233
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=23.97 E-value=28 Score=20.77 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=7.6
Q ss_pred hhcchhhhhhh
Q psy11409 273 QYYCEHCWATI 283 (320)
Q Consensus 273 ~y~c~~cw~~~ 283 (320)
||||..|=...
T Consensus 1 q~~C~~C~k~f 11 (27)
T PF12171_consen 1 QFYCDACDKYF 11 (27)
T ss_dssp -CBBTTTTBBB
T ss_pred CCCcccCCCCc
Confidence 68999996443
No 234
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.68 E-value=2.3e+02 Score=22.38 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
+...-||||+++..+-|.-...+-+- .+.=..+-+-.+ .+ ..||+|-+.-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~-~~~G~a~m~~~~--~n-eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEW-IGDGSAVMVWSD--NN-EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhh-CCCccEEEEEcc--CC-CCCEEEEEeC
Confidence 34567999999998765544444442 343333333344 23 8899998883
No 235
>CHL00030 rpl23 ribosomal protein L23
Probab=23.01 E-value=2.4e+02 Score=22.54 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=30.4
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecCC
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTDP 198 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D~ 198 (320)
+.|+--++...|..++++.++.+||- |..|....-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 57777889999999999999999986 8888777664
No 236
>COG4803 Predicted membrane protein [Function unknown]
Probab=22.66 E-value=1.1e+02 Score=26.83 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=44.8
Q ss_pred CccCCCCcchhhHHHHHHhhhhcCCCCCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE
Q psy11409 15 YISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV 82 (320)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v 82 (320)
-+++.|.|.-+-|++.+....++-|. +.-+|| |-.++|++.+.+-++.||-..+
T Consensus 91 Al~g~l~DvGIdDdFik~l~~ti~pG------------~sALFv--Li~k~t~DKVl~~~~g~~g~vl 144 (170)
T COG4803 91 ALSGSLTDVGIDDDFIKELGETIQPG------------SSALFV--LISKMTEDKVLADLSGFGGTVL 144 (170)
T ss_pred hhccceeecCcCHHHHHHHHhhcCCC------------CeEEEE--EeeccchHHHHHHhhccCCEEE
Confidence 45778999999999999999998773 346887 5678899999999999987664
No 237
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.47 E-value=57 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhccCC
Q psy11409 63 PHYDHEEITASFRRFG 78 (320)
Q Consensus 63 ~dvtEe~L~~~Fs~FG 78 (320)
-|+++++|++.|.+-+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4889999999998754
No 238
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=22.26 E-value=79 Score=19.06 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=15.2
Q ss_pred EEEEeCCHHHHHHHHHhC
Q psy11409 100 AFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 100 gFV~F~~eesv~kaL~~~ 117 (320)
-.|.|.++++.+++|..|
T Consensus 8 ~~v~f~~~~~l~~LlS~C 25 (26)
T PF07723_consen 8 DSVVFSDEDSLERLLSGC 25 (26)
T ss_pred eEEEECChhHHHHhhccC
Confidence 458999999999999766
No 239
>KOG3702|consensus
Probab=21.74 E-value=66 Score=34.37 Aligned_cols=58 Identities=17% Similarity=0.060 Sum_probs=54.0
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAA 220 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kA 220 (320)
.+||+-+-...-+..-|..++.. ++.+..+.+.++.+++-.=+-++..|....++..|
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~-~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~ 569 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEK-KNELTKAKILTRCKYGPACTSAECEFAHPTAAENA 569 (681)
T ss_pred CceecccccccCCCcchhhCccc-ccccccceeeccccCCCcCCchhhhhcCCcchhhh
Confidence 48999999999999999999998 99999999999999999989999999999998655
No 240
>KOG4410|consensus
Probab=21.42 E-value=64 Score=31.25 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=36.3
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHH
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQA 215 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~e 215 (320)
.-|+++|||+++.-.||+.-+.+ -|-+ -+-.- -+-+.|-+|..|-|..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~-~~~~---pm~is--wkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRK-RECT---PMSIS--WKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHh-cCCC---ceeEe--eecCCcceeEecCCcc
Confidence 56999999999999999999987 4432 22222 3456899999997654
No 241
>KOG4367|consensus
Probab=21.21 E-value=40 Score=34.41 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=36.7
Q ss_pred cccccccCcccCCCcccccCCccchhhhcchhhhhhhhCCCCC-CCCccccccCC
Q psy11409 247 QMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGR-EFHKPLVKEGA 300 (320)
Q Consensus 247 ~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~~~~~-~~h~p~~~~~~ 300 (320)
.+|..|.++. +-+--+|. .|--|||..|--+-|...+. ..|+=+-.+..
T Consensus 163 ~kcqlce~a~---k~a~v~ce--qcdv~yc~pc~~~~hp~rgplakh~l~~~~~g 212 (699)
T KOG4367|consen 163 LKCQLCEKAP---KEATVMCE--QCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQG 212 (699)
T ss_pred hhhhhhcCCh---hhhhhhHh--hCceEEechHHhccCCCCCchhhcccCCcccC
Confidence 5677777763 55667774 58889999999999998765 78876655544
No 242
>PF11249 DUF3047: Protein of unknown function (DUF3047); InterPro: IPR021409 This bacterial family of proteins has no known function.
Probab=20.14 E-value=1.6e+02 Score=26.25 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=26.6
Q ss_pred HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 176 LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 176 edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
+|.+++|++..+.|..|.|++|-+.-..++-|++
T Consensus 145 ~Dy~~~FG~~p~~i~~vai~tDsDnT~~~a~A~y 178 (183)
T PF11249_consen 145 ADYRRAFGEEPPRIVGVAIMTDSDNTGGSARAYY 178 (183)
T ss_pred HHHHHHhCCCCCceeEEEEEEEcCCCCCEEEEEE
Confidence 7888888877889999999999666555555543
No 243
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.03 E-value=93 Score=30.34 Aligned_cols=41 Identities=24% Similarity=0.580 Sum_probs=26.6
Q ss_pred ccccccccccCcccCCCcccccCCccchhhhcchhhhhhhhCC
Q psy11409 244 LDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSK 286 (320)
Q Consensus 244 ~~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~~ 286 (320)
|++.+|..|....+.....-.+= + .|---||++|....-..
T Consensus 1 md~~~CP~Ck~~~y~np~~kl~i-~-~CGH~~C~sCv~~l~~~ 41 (309)
T TIGR00570 1 MDDQGCPRCKTTKYRNPSLKLMV-N-VCGHTLCESCVDLLFVR 41 (309)
T ss_pred CCCCCCCcCCCCCccCccccccc-C-CCCCcccHHHHHHHhcC
Confidence 68899999998632222211111 1 58888999999887544
Done!