Query psy11409
Match_columns 320
No_of_seqs 251 out of 1371
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:41:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2E-32 7E-37 238.0 17.5 176 52-249 12-187 (196)
2 2cjk_A Nuclear polyadenylated 100.0 1.9E-32 6.5E-37 232.5 11.8 163 52-243 2-164 (167)
3 4f02_A Polyadenylate-binding p 100.0 4.1E-31 1.4E-35 236.2 14.9 168 50-245 12-181 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 5.4E-30 1.8E-34 217.1 19.5 148 52-223 2-150 (168)
5 1fxl_A Paraneoplastic encephal 100.0 6.9E-30 2.4E-34 215.5 19.7 148 52-223 1-149 (167)
6 3nmr_A Cugbp ELAV-like family 100.0 2.3E-30 7.7E-35 220.5 16.8 153 53-223 3-155 (175)
7 3md3_A Nuclear and cytoplasmic 100.0 4.5E-30 1.5E-34 216.4 17.3 147 54-223 1-148 (166)
8 2qfj_A FBP-interacting repress 100.0 4.1E-29 1.4E-33 220.3 16.4 173 53-242 28-202 (216)
9 2yh0_A Splicing factor U2AF 65 100.0 3.8E-28 1.3E-32 211.3 18.7 182 52-243 3-192 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 1.2E-28 4E-33 210.0 15.1 141 52-223 3-155 (172)
11 3tyt_A Heterogeneous nuclear r 99.9 5E-27 1.7E-31 210.2 18.8 170 52-237 3-199 (205)
12 3sde_A Paraspeckle component 1 99.9 1.5E-27 5.2E-32 219.5 14.5 156 51-243 20-177 (261)
13 1fje_B Nucleolin RBD12, protei 99.9 6.6E-28 2.2E-32 206.6 11.3 161 50-242 10-171 (175)
14 3smz_A Protein raver-1, ribonu 99.9 1E-26 3.4E-31 214.7 19.0 200 15-242 59-261 (284)
15 2ghp_A U4/U6 snRNA-associated 99.9 1.5E-26 5.2E-31 214.3 15.6 202 13-242 81-288 (292)
16 3smz_A Protein raver-1, ribonu 99.9 2.8E-26 9.5E-31 211.7 17.0 135 52-223 21-156 (284)
17 3pgw_A U1-A; protein-RNA compl 99.9 2.9E-25 1E-29 204.6 19.7 163 50-223 6-263 (282)
18 1qm9_A Polypyrimidine tract-bi 99.9 2.6E-25 8.8E-30 194.6 17.6 159 52-223 2-177 (198)
19 2ghp_A U4/U6 snRNA-associated 99.9 8E-26 2.7E-30 209.4 15.0 140 50-223 38-178 (292)
20 2adc_A Polypyrimidine tract-bi 99.9 6.1E-25 2.1E-29 198.2 19.7 159 50-223 31-208 (229)
21 2dnl_A Cytoplasmic polyadenyla 99.9 2.2E-21 7.5E-26 157.5 11.2 105 51-155 6-110 (114)
22 2kn4_A Immunoglobulin G-bindin 99.8 4.6E-20 1.6E-24 156.7 12.6 134 94-242 10-147 (158)
23 4f25_A Polyadenylate-binding p 99.8 1.9E-19 6.5E-24 146.3 8.4 108 53-177 5-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.7 2E-17 6.7E-22 131.5 9.9 62 161-223 19-80 (99)
25 3s7r_A Heterogeneous nuclear r 99.7 2.8E-17 9.5E-22 126.0 10.0 78 158-240 8-85 (87)
26 2lxi_A RNA-binding protein 10; 99.7 1.1E-17 3.7E-22 130.8 6.5 78 161-243 1-81 (91)
27 2dnl_A Cytoplasmic polyadenyla 99.7 2.6E-17 9E-22 133.3 8.8 87 160-249 7-105 (114)
28 1s79_A Lupus LA protein; RRM, 99.7 4.5E-17 1.5E-21 130.6 9.4 70 160-231 10-79 (103)
29 3s8s_A Histone-lysine N-methyl 99.7 5.1E-17 1.7E-21 131.7 9.5 64 159-223 4-67 (110)
30 2i2y_A Fusion protein consists 99.7 1.2E-16 4.1E-21 134.9 11.5 117 94-223 10-129 (150)
31 3p5t_L Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 126.8 7.0 77 162-243 2-81 (90)
32 2dgs_A DAZ-associated protein 99.7 2.1E-16 7.3E-21 124.0 11.2 80 159-243 8-87 (99)
33 2div_A TRNA selenocysteine ass 99.7 1.6E-16 5.4E-21 124.6 10.1 84 158-242 6-91 (99)
34 1iqt_A AUF1, heterogeneous nuc 99.7 4.4E-17 1.5E-21 121.3 6.5 69 163-232 1-69 (75)
35 2rs2_A Musashi-1, RNA-binding 99.7 1.7E-16 5.8E-21 127.8 9.9 80 159-243 23-102 (109)
36 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.6E-16 5.4E-21 121.4 9.1 64 159-223 4-67 (87)
37 2cqg_A TDP-43, TAR DNA-binding 99.7 4.9E-16 1.7E-20 122.8 12.1 81 159-245 13-93 (103)
38 1x4h_A RNA-binding protein 28; 99.7 4.4E-16 1.5E-20 124.3 11.9 82 158-244 12-100 (111)
39 2dh8_A DAZ-associated protein 99.7 1.9E-16 6.4E-21 125.6 9.4 83 158-245 13-95 (105)
40 2lkz_A RNA-binding protein 5; 99.7 4.8E-17 1.6E-21 128.9 5.0 61 162-223 10-72 (95)
41 2mss_A Protein (musashi1); RNA 99.7 1.6E-16 5.4E-21 118.5 7.6 67 163-230 1-67 (75)
42 2x1f_A MRNA 3'-END-processing 99.7 3.5E-16 1.2E-20 122.3 9.9 79 160-243 1-80 (96)
43 3md1_A Nuclear and cytoplasmic 99.7 3.7E-16 1.3E-20 118.3 9.7 76 162-242 2-78 (83)
44 4fxv_A ELAV-like protein 1; RN 99.7 2.5E-16 8.7E-21 125.0 9.1 69 49-119 15-83 (99)
45 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-16 3.9E-21 119.5 6.6 69 162-231 1-69 (77)
46 1whw_A Hypothetical protein ri 99.7 6.5E-16 2.2E-20 121.1 11.1 82 159-245 6-88 (99)
47 1x5u_A Splicing factor 3B subu 99.7 7.5E-16 2.6E-20 122.0 11.3 81 158-243 12-93 (105)
48 2dgp_A Bruno-like 4, RNA bindi 99.7 3E-16 1E-20 124.5 9.0 83 158-243 10-94 (106)
49 2hvz_A Splicing factor, argini 99.7 2.5E-16 8.6E-21 124.1 8.5 97 54-170 1-100 (101)
50 3ns6_A Eukaryotic translation 99.6 1.2E-16 4.2E-21 126.6 6.5 62 161-223 6-73 (100)
51 1x4e_A RNA binding motif, sing 99.6 2.7E-16 9.3E-21 119.9 8.1 64 159-223 3-66 (85)
52 2dnz_A Probable RNA-binding pr 99.6 9.2E-16 3.1E-20 119.2 10.9 79 159-242 3-82 (95)
53 2lxi_A RNA-binding protein 10; 99.6 3.1E-16 1.1E-20 122.4 8.1 74 53-128 1-77 (91)
54 2cqd_A RNA-binding region cont 99.6 1E-15 3.5E-20 123.6 11.1 80 158-242 14-93 (116)
55 2lea_A Serine/arginine-rich sp 99.6 3.4E-16 1.2E-20 131.0 8.3 104 98-223 5-108 (135)
56 1x4b_A Heterogeneous nuclear r 99.6 7.3E-16 2.5E-20 124.5 9.8 81 160-245 26-106 (116)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.4E-16 1.9E-20 122.2 8.7 80 159-243 10-90 (102)
58 1x5t_A Splicing factor 3B subu 99.6 5.9E-16 2E-20 120.5 8.8 79 160-243 4-84 (96)
59 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.7E-16 2.3E-20 117.4 8.8 64 159-223 5-68 (85)
60 2cqc_A Arginine/serine-rich sp 99.6 9E-16 3.1E-20 119.0 9.7 79 158-241 12-91 (95)
61 1p27_B RNA-binding protein 8A; 99.6 1.5E-15 5.2E-20 120.4 11.1 71 159-230 21-92 (106)
62 1wg5_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 121.9 10.1 78 159-242 13-91 (104)
63 2cpz_A CUG triplet repeat RNA- 99.6 1E-15 3.5E-20 123.5 10.3 80 159-243 23-103 (115)
64 2dnm_A SRP46 splicing factor; 99.6 6.7E-16 2.3E-20 122.0 9.0 80 158-242 10-90 (103)
65 4f25_A Polyadenylate-binding p 99.6 6.2E-16 2.1E-20 125.5 8.8 76 161-243 5-81 (115)
66 2la6_A RNA-binding protein FUS 99.6 1.8E-15 6.2E-20 118.8 11.2 65 158-223 10-82 (99)
67 2cph_A RNA binding motif prote 99.6 1.9E-15 6.4E-20 119.9 11.3 80 158-242 12-94 (107)
68 2dgo_A Cytotoxic granule-assoc 99.6 1.5E-15 5.1E-20 122.3 10.9 79 159-242 13-92 (115)
69 2dnh_A Bruno-like 5, RNA bindi 99.6 1.9E-15 6.5E-20 119.6 11.2 63 159-223 13-75 (105)
70 3s8s_A Histone-lysine N-methyl 99.6 8.9E-16 3E-20 124.3 9.2 67 51-119 4-70 (110)
71 2cpy_A RNA-binding protein 12; 99.6 3.6E-16 1.2E-20 126.5 6.9 79 159-243 13-92 (114)
72 2do4_A Squamous cell carcinoma 99.6 2.5E-15 8.5E-20 118.1 11.6 78 159-242 15-93 (100)
73 2cq0_A Eukaryotic translation 99.6 8.7E-16 3E-20 121.4 8.9 81 158-243 12-93 (103)
74 2cpf_A RNA binding motif prote 99.6 9.5E-16 3.3E-20 119.9 9.1 80 159-243 3-86 (98)
75 2dng_A Eukaryotic translation 99.6 1.1E-15 3.7E-20 120.9 9.4 80 158-243 12-91 (103)
76 1x5s_A Cold-inducible RNA-bind 99.6 2E-15 6.7E-20 118.9 10.9 64 159-223 10-73 (102)
77 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.7E-20 117.2 8.9 77 161-242 6-82 (89)
78 2e5h_A Zinc finger CCHC-type a 99.6 1.1E-15 3.6E-20 118.6 8.8 64 159-223 14-77 (94)
79 3s7r_A Heterogeneous nuclear r 99.6 1.1E-15 3.9E-20 116.9 8.8 75 51-127 9-83 (87)
80 1wi8_A EIF-4B, eukaryotic tran 99.6 1.2E-15 4.1E-20 120.9 9.2 80 159-244 13-93 (104)
81 3n9u_C Cleavage and polyadenyl 99.6 1.3E-15 4.3E-20 130.9 10.0 78 160-242 54-134 (156)
82 1wez_A HnRNP H', FTP-3, hetero 99.6 6E-16 2.1E-20 123.5 7.4 77 159-242 13-89 (102)
83 1u6f_A Tcubp1, RNA-binding pro 99.6 2.6E-15 9E-20 124.8 11.5 81 158-243 39-120 (139)
84 3lqv_A PRE-mRNA branch site pr 99.6 1.2E-15 4.3E-20 122.8 8.9 105 50-188 5-109 (115)
85 1s79_A Lupus LA protein; RRM, 99.6 6.9E-16 2.4E-20 123.6 7.2 63 51-116 9-71 (103)
86 2kxn_B Transformer-2 protein h 99.6 1.8E-15 6.1E-20 125.7 9.9 80 158-242 43-123 (129)
87 3pgw_S U1-70K; protein-RNA com 99.6 5.6E-16 1.9E-20 153.5 7.9 65 158-223 99-163 (437)
88 3ulh_A THO complex subunit 4; 99.6 2.5E-15 8.6E-20 119.3 10.1 65 157-223 25-89 (107)
89 1oo0_B CG8781-PA, drosophila Y 99.6 2.4E-15 8.1E-20 120.2 9.9 79 159-242 24-103 (110)
90 2lkz_A RNA-binding protein 5; 99.6 8.4E-16 2.9E-20 121.7 6.7 65 54-120 10-76 (95)
91 4f02_A Polyadenylate-binding p 99.6 1.5E-15 5.1E-20 135.1 9.0 67 156-223 10-76 (213)
92 2cpe_A RNA-binding protein EWS 99.6 2.5E-15 8.5E-20 120.6 9.5 80 159-243 13-101 (113)
93 2jrs_A RNA-binding protein 39; 99.6 2.7E-15 9.4E-20 120.6 9.7 80 158-242 23-103 (108)
94 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4E-15 1.4E-19 123.1 11.0 65 158-223 60-124 (140)
95 2dhg_A TRNA selenocysteine ass 99.6 3.5E-15 1.2E-19 117.9 10.1 64 159-223 7-70 (104)
96 2rs2_A Musashi-1, RNA-binding 99.6 2.7E-15 9.3E-20 120.7 9.5 79 48-128 20-98 (109)
97 2m2b_A RNA-binding protein 10; 99.6 1E-15 3.5E-20 126.8 7.2 64 158-223 20-85 (131)
98 2dis_A Unnamed protein product 99.6 2.8E-15 9.6E-20 119.4 9.4 64 160-224 7-72 (109)
99 2mss_A Protein (musashi1); RNA 99.6 1.5E-15 5E-20 113.1 7.3 60 55-116 1-60 (75)
100 2xs2_A Deleted in azoospermia- 99.6 7.2E-16 2.5E-20 121.6 5.9 69 160-231 8-76 (102)
101 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-15 3.9E-20 120.7 6.9 71 158-230 16-87 (100)
102 2cq4_A RNA binding motif prote 99.6 1.6E-15 5.4E-20 122.2 7.7 77 161-242 25-101 (114)
103 2krb_A Eukaryotic translation 99.6 2.2E-15 7.5E-20 114.3 8.0 59 162-223 2-66 (81)
104 2hgl_A HNRPF protein, heteroge 99.6 1.5E-15 5E-20 128.0 7.6 79 159-243 42-123 (136)
105 2dgw_A Probable RNA-binding pr 99.6 5.8E-15 2E-19 114.0 10.3 77 159-242 8-84 (91)
106 2dnn_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 121.9 8.5 76 161-243 16-91 (109)
107 2hgm_A HNRPF protein, heteroge 99.6 2.4E-15 8.2E-20 125.3 8.5 77 159-242 40-118 (126)
108 2ywk_A Putative RNA-binding pr 99.6 2.7E-15 9.4E-20 116.4 8.3 63 159-223 14-76 (95)
109 2khc_A Testis-specific RNP-typ 99.6 2.9E-15 1E-19 121.1 8.5 65 158-223 37-101 (118)
110 2kt5_A RNA and export factor-b 99.6 9.5E-15 3.2E-19 119.4 11.6 80 157-242 31-111 (124)
111 2dgs_A DAZ-associated protein 99.6 4.5E-15 1.5E-19 116.4 9.2 65 51-117 8-72 (99)
112 2cqd_A RNA-binding region cont 99.6 5.2E-15 1.8E-19 119.4 9.6 77 50-128 14-90 (116)
113 2dgv_A HnRNP M, heterogeneous 99.6 1E-14 3.5E-19 112.6 10.9 62 159-223 6-67 (92)
114 4a8x_A RNA-binding protein wit 99.6 3.1E-15 1.1E-19 114.2 7.8 77 161-242 4-82 (88)
115 2x1f_A MRNA 3'-END-processing 99.6 6E-15 2.1E-19 115.2 9.6 66 52-119 1-66 (96)
116 2dnz_A Probable RNA-binding pr 99.6 1.2E-14 4E-19 112.9 11.2 67 51-119 3-69 (95)
117 3ex7_B RNA-binding protein 8A; 99.6 6.1E-15 2.1E-19 120.5 10.0 71 159-230 20-91 (126)
118 1p1t_A Cleavage stimulation fa 99.6 3.9E-15 1.3E-19 117.4 8.6 63 160-223 7-69 (104)
119 3d2w_A TAR DNA-binding protein 99.6 4.3E-15 1.5E-19 115.5 8.6 76 159-245 9-84 (89)
120 1whw_A Hypothetical protein ri 99.6 9.6E-15 3.3E-19 114.4 10.7 67 51-119 6-72 (99)
121 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.6E-20 113.2 5.5 62 55-118 1-62 (75)
122 1h2v_Z 20 kDa nuclear CAP bind 99.6 6.8E-15 2.3E-19 124.9 10.6 71 158-229 36-107 (156)
123 2cq3_A RNA-binding protein 9; 99.6 1.2E-14 4E-19 114.8 11.1 79 158-243 12-91 (103)
124 2fy1_A RNA-binding motif prote 99.6 6.8E-15 2.3E-19 119.7 10.0 63 159-223 5-67 (116)
125 1wg5_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 118.4 8.5 75 51-128 13-88 (104)
126 2dgx_A KIAA0430 protein; RRM d 99.6 5.9E-15 2E-19 115.7 9.2 77 158-242 6-87 (96)
127 3p5t_L Cleavage and polyadenyl 99.6 1.9E-15 6.4E-20 117.0 6.1 64 54-119 2-67 (90)
128 2cqp_A RNA-binding protein 12; 99.6 1.6E-15 5.4E-20 118.6 5.8 64 159-223 13-76 (98)
129 2db1_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 121.8 8.0 79 159-243 15-96 (118)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.8E-15 6.3E-20 112.8 5.8 65 54-120 1-65 (77)
131 2dha_A FLJ20171 protein; RRM d 99.6 2.8E-15 9.6E-20 124.2 7.5 78 160-243 22-103 (123)
132 2do0_A HnRNP M, heterogeneous 99.6 1.1E-14 3.6E-19 117.0 10.6 64 158-223 12-75 (114)
133 2jwn_A Embryonic polyadenylate 99.6 4E-15 1.4E-19 121.3 8.2 77 161-242 36-112 (124)
134 2d9p_A Polyadenylate-binding p 99.6 1.2E-14 4.1E-19 114.7 10.8 62 159-223 13-74 (103)
135 2dnh_A Bruno-like 5, RNA bindi 99.6 1.6E-14 5.3E-19 114.3 11.3 67 50-119 12-78 (105)
136 1x5u_A Splicing factor 3B subu 99.6 1.7E-14 5.9E-19 114.0 11.5 68 50-119 12-79 (105)
137 2lmi_A GRSF-1, G-rich sequence 99.6 2.6E-15 9E-20 120.1 6.8 79 159-243 9-90 (107)
138 1sjq_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 119.7 8.5 58 159-223 14-71 (105)
139 2ek1_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 118.2 4.9 63 160-223 14-76 (95)
140 2cpf_A RNA binding motif prote 99.6 7.4E-15 2.5E-19 114.8 9.1 70 50-119 2-72 (98)
141 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.1E-15 2.1E-19 126.7 9.4 80 158-242 69-149 (165)
142 1x4e_A RNA binding motif, sing 99.6 3.3E-15 1.1E-19 113.9 6.7 67 51-119 3-69 (85)
143 1x5o_A RNA binding motif, sing 99.6 9.1E-15 3.1E-19 117.5 9.6 63 159-223 23-85 (114)
144 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.2E-15 2.1E-19 112.5 8.2 66 52-119 5-70 (87)
145 1x4h_A RNA-binding protein 28; 99.6 2.5E-14 8.5E-19 114.1 12.1 67 50-118 12-78 (111)
146 2ki2_A SS-DNA binding protein 99.6 2.2E-15 7.7E-20 116.0 5.7 60 162-223 2-61 (90)
147 1x5t_A Splicing factor 3B subu 99.6 8.4E-15 2.9E-19 113.9 9.0 68 50-119 2-70 (96)
148 2cpz_A CUG triplet repeat RNA- 99.6 1.5E-14 5E-19 116.6 10.3 68 50-119 22-89 (115)
149 1l3k_A Heterogeneous nuclear r 99.6 8.6E-15 2.9E-19 126.5 9.4 71 159-230 11-81 (196)
150 2cqg_A TDP-43, TAR DNA-binding 99.6 1.9E-14 6.5E-19 113.6 10.6 76 50-128 12-87 (103)
151 1wel_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 123.2 5.6 79 159-242 23-101 (124)
152 3mdf_A Peptidyl-prolyl CIS-tra 99.6 8.1E-15 2.8E-19 111.3 8.1 67 51-119 5-71 (85)
153 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.7E-19 110.1 8.7 64 54-119 2-65 (83)
154 2dnm_A SRP46 splicing factor; 99.6 1.6E-14 5.6E-19 114.0 10.0 67 51-119 11-77 (103)
155 2do4_A Squamous cell carcinoma 99.6 1.9E-14 6.6E-19 113.0 10.2 67 50-119 14-80 (100)
156 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.1E-14 7.3E-19 113.3 10.3 78 158-242 12-90 (103)
157 2jrs_A RNA-binding protein 39; 99.5 1.7E-14 6E-19 115.8 9.9 70 48-119 21-90 (108)
158 1wez_A HnRNP H', FTP-3, hetero 99.5 5.3E-15 1.8E-19 118.0 6.6 63 50-116 12-74 (102)
159 2dh8_A DAZ-associated protein 99.5 1E-14 3.5E-19 115.5 8.3 76 51-128 14-89 (105)
160 2dgp_A Bruno-like 4, RNA bindi 99.5 1.6E-14 5.5E-19 114.4 9.4 68 50-119 10-77 (106)
161 3q2s_C Cleavage and polyadenyl 99.5 9.3E-15 3.2E-19 132.8 9.1 70 160-230 67-139 (229)
162 2cph_A RNA binding motif prote 99.5 3.6E-14 1.2E-18 112.4 11.4 67 50-117 12-78 (107)
163 2krb_A Eukaryotic translation 99.5 5.9E-15 2E-19 111.9 6.5 63 53-119 1-69 (81)
164 2e5h_A Zinc finger CCHC-type a 99.5 2.4E-14 8.1E-19 110.9 10.0 67 51-119 14-80 (94)
165 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.5E-14 5.2E-19 113.8 9.1 68 50-119 9-76 (102)
166 2cq0_A Eukaryotic translation 99.5 2.1E-14 7.1E-19 113.4 9.8 68 50-119 12-79 (103)
167 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.2E-19 117.7 9.7 73 49-129 21-99 (112)
168 2ad9_A Polypyrimidine tract-bi 99.5 1.4E-14 4.7E-19 119.7 9.0 66 45-118 23-88 (119)
169 1x5s_A Cold-inducible RNA-bind 99.5 1.6E-14 5.6E-19 113.6 9.1 67 51-119 10-76 (102)
170 2cpi_A CCR4-NOT transcription 99.5 1.1E-14 3.9E-19 117.1 8.4 81 158-243 12-99 (111)
171 2d9p_A Polyadenylate-binding p 99.5 3.3E-14 1.1E-18 112.2 10.9 66 50-119 12-77 (103)
172 2hgn_A Heterogeneous nuclear r 99.5 3.2E-15 1.1E-19 126.4 5.3 77 159-242 44-120 (139)
173 3d2w_A TAR DNA-binding protein 99.5 8.8E-15 3E-19 113.8 7.4 58 50-114 8-65 (89)
174 2div_A TRNA selenocysteine ass 99.5 1.8E-14 6.3E-19 112.7 9.2 68 50-119 6-74 (99)
175 2cq1_A PTB-like protein L; RRM 99.5 1.5E-14 5.2E-19 115.7 8.9 59 158-223 12-70 (101)
176 2la6_A RNA-binding protein FUS 99.5 2.7E-14 9.4E-19 112.0 10.2 68 50-119 10-85 (99)
177 2nlw_A Eukaryotic translation 99.5 1E-14 3.6E-19 116.2 7.8 77 159-242 13-97 (105)
178 2dha_A FLJ20171 protein; RRM d 99.5 4.5E-15 1.6E-19 123.0 5.8 74 52-128 22-99 (123)
179 2cjk_A Nuclear polyadenylated 99.5 6.8E-15 2.3E-19 124.0 6.9 62 161-223 3-64 (167)
180 2fy1_A RNA-binding motif prote 99.5 5.8E-14 2E-18 114.2 12.0 66 51-119 5-70 (116)
181 2dgo_A Cytotoxic granule-assoc 99.5 3E-14 1E-18 114.6 10.2 68 50-119 12-79 (115)
182 2cpy_A RNA-binding protein 12; 99.5 9E-15 3.1E-19 118.3 7.0 76 50-128 12-88 (114)
183 2j76_E EIF-4B, EIF4B, eukaryot 99.5 9.4E-15 3.2E-19 115.4 6.8 67 49-118 15-81 (100)
184 1sjq_A Polypyrimidine tract-bi 99.5 1.6E-14 5.5E-19 116.8 8.3 61 50-118 13-73 (105)
185 3ucg_A Polyadenylate-binding p 99.5 1.6E-14 5.5E-19 110.6 7.9 63 53-118 6-68 (89)
186 2cqc_A Arginine/serine-rich sp 99.5 1.9E-14 6.6E-19 111.4 8.2 68 50-119 12-79 (95)
187 1p27_B RNA-binding protein 8A; 99.5 1.9E-14 6.7E-19 113.9 8.4 67 51-119 21-87 (106)
188 3ns6_A Eukaryotic translation 99.5 8E-15 2.7E-19 116.0 6.0 65 53-119 6-76 (100)
189 1fj7_A Nucleolin RBD1, protein 99.5 1.8E-15 6.1E-20 119.1 2.2 77 160-242 16-92 (101)
190 1x4b_A Heterogeneous nuclear r 99.5 2.3E-14 7.7E-19 115.7 8.7 76 52-129 26-101 (116)
191 3r27_A HnRNP L, heterogeneous 99.5 2.6E-14 9E-19 114.6 8.9 64 48-119 16-79 (100)
192 2err_A Ataxin-2-binding protei 99.5 1.7E-14 5.7E-19 115.9 7.8 79 157-242 25-104 (109)
193 1u6f_A Tcubp1, RNA-binding pro 99.5 4.6E-14 1.6E-18 117.2 10.7 69 49-119 38-106 (139)
194 2ad9_A Polypyrimidine tract-bi 99.5 2E-14 6.9E-19 118.7 8.3 59 158-223 28-86 (119)
195 1x4d_A Matrin 3; structural ge 99.5 1.7E-14 5.7E-19 115.9 7.6 60 157-223 11-71 (102)
196 4a8x_A RNA-binding protein wit 99.5 1.7E-14 5.9E-19 110.0 7.4 68 51-119 2-69 (88)
197 2dis_A Unnamed protein product 99.5 3.6E-14 1.2E-18 112.9 9.5 67 50-118 5-73 (109)
198 3n9u_C Cleavage and polyadenyl 99.5 1.9E-14 6.4E-19 123.6 8.4 66 52-119 54-121 (156)
199 1wel_A RNA-binding protein 12; 99.5 6.5E-15 2.2E-19 120.7 5.2 66 50-118 22-87 (124)
200 2dgv_A HnRNP M, heterogeneous 99.5 3.4E-14 1.2E-18 109.5 9.0 65 51-119 6-70 (92)
201 1wi8_A EIF-4B, eukaryotic tran 99.5 2.4E-14 8.3E-19 113.3 8.3 66 50-119 12-78 (104)
202 1wex_A Hypothetical protein (r 99.5 5.2E-14 1.8E-18 113.1 10.3 59 158-223 12-70 (104)
203 2cq4_A RNA binding motif prote 99.5 2.5E-14 8.6E-19 115.0 8.4 75 52-128 24-98 (114)
204 2j8a_A Histone-lysine N-methyl 99.5 1.1E-14 3.7E-19 122.1 6.2 60 162-222 3-74 (136)
205 3r27_A HnRNP L, heterogeneous 99.5 3.3E-14 1.1E-18 114.0 8.9 60 157-223 17-76 (100)
206 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6.1E-19 115.8 7.3 61 50-118 12-73 (102)
207 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-14 4.4E-19 111.5 6.2 75 160-245 4-78 (88)
208 2cqp_A RNA-binding protein 12; 99.5 2.4E-14 8.3E-19 111.8 7.9 67 51-119 13-79 (98)
209 2do0_A HnRNP M, heterogeneous 99.5 6.8E-14 2.3E-18 112.2 10.7 67 50-119 12-78 (114)
210 2kn4_A Immunoglobulin G-bindin 99.5 1.1E-13 3.7E-18 117.2 12.5 98 20-119 20-134 (158)
211 2dnn_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 116.1 8.0 72 53-128 16-87 (109)
212 2khc_A Testis-specific RNP-typ 99.5 5.5E-14 1.9E-18 113.5 10.1 68 50-119 37-104 (118)
213 2hgl_A HNRPF protein, heteroge 99.5 1.4E-14 4.6E-19 122.1 6.8 75 51-128 42-119 (136)
214 2db1_A Heterogeneous nuclear r 99.5 1.4E-14 4.9E-19 118.1 6.6 74 52-128 16-92 (118)
215 1oo0_B CG8781-PA, drosophila Y 99.5 3.3E-14 1.1E-18 113.5 8.6 68 50-119 23-90 (110)
216 2nlw_A Eukaryotic translation 99.5 3.9E-14 1.3E-18 112.8 8.9 66 50-119 12-83 (105)
217 2cqi_A Nucleolysin TIAR; RNA r 99.5 7.2E-14 2.4E-18 110.2 10.3 66 50-119 12-77 (103)
218 2ek1_A RNA-binding protein 12; 99.5 1.1E-14 3.9E-19 112.9 5.5 65 53-119 15-79 (95)
219 2dng_A Eukaryotic translation 99.5 2.7E-14 9.2E-19 112.9 7.8 65 50-118 12-76 (103)
220 2hgm_A HNRPF protein, heteroge 99.5 2.1E-14 7.3E-19 119.5 7.5 66 51-119 40-106 (126)
221 1fxl_A Paraneoplastic encephal 99.5 4.1E-14 1.4E-18 118.5 9.3 63 160-223 1-63 (167)
222 2ywk_A Putative RNA-binding pr 99.5 2.7E-14 9.4E-19 110.7 7.6 65 52-119 15-79 (95)
223 3nmr_A Cugbp ELAV-like family 99.5 3E-14 1E-18 120.5 8.4 62 161-223 3-66 (175)
224 2m2b_A RNA-binding protein 10; 99.5 3.5E-14 1.2E-18 117.5 8.6 67 50-119 20-88 (131)
225 2cq1_A PTB-like protein L; RRM 99.5 4.9E-14 1.7E-18 112.8 9.1 62 49-118 11-72 (101)
226 2lmi_A GRSF-1, G-rich sequence 99.5 1.2E-14 4.2E-19 116.2 5.5 63 51-116 9-74 (107)
227 2xs2_A Deleted in azoospermia- 99.5 9.1E-15 3.1E-19 115.2 4.7 73 52-128 8-80 (102)
228 2dhg_A TRNA selenocysteine ass 99.5 5.1E-14 1.7E-18 111.1 8.8 67 50-119 6-73 (104)
229 1p1t_A Cleavage stimulation fa 99.5 4.5E-14 1.6E-18 111.3 8.4 65 53-119 8-72 (104)
230 1x4a_A Splicing factor, argini 99.5 8.5E-14 2.9E-18 111.1 9.9 65 50-119 19-83 (109)
231 2cq3_A RNA-binding protein 9; 99.5 1.2E-13 4.2E-18 108.9 10.7 66 50-119 12-77 (103)
232 1x4c_A Splicing factor, argini 99.5 1.4E-13 4.7E-18 110.1 11.0 78 159-244 13-92 (108)
233 2cpe_A RNA-binding protein EWS 99.5 6.8E-14 2.3E-18 112.2 9.3 68 50-119 12-87 (113)
234 2kxn_B Transformer-2 protein h 99.5 5.1E-14 1.8E-18 116.9 8.8 69 49-119 42-110 (129)
235 2fc9_A NCL protein; structure 99.5 8.7E-14 3E-18 109.4 9.7 64 50-119 12-75 (101)
236 2cpi_A CCR4-NOT transcription 99.5 3.6E-14 1.2E-18 114.2 7.5 79 51-129 13-96 (111)
237 1wf0_A TDP-43, TAR DNA-binding 99.5 2.7E-14 9.3E-19 109.7 6.4 71 51-129 3-73 (88)
238 2jvr_A Nucleolar protein 3; RN 99.5 3.7E-14 1.3E-18 115.4 7.5 59 160-223 27-86 (111)
239 3ex7_B RNA-binding protein 8A; 99.5 7.9E-14 2.7E-18 113.9 9.4 68 50-119 19-86 (126)
240 1x4a_A Splicing factor, argini 99.5 9.5E-14 3.3E-18 110.8 9.6 76 159-242 20-96 (109)
241 1b7f_A Protein (SXL-lethal pro 99.5 4.2E-14 1.4E-18 119.0 7.7 63 160-223 2-64 (168)
242 2f3j_A RNA and export factor b 99.5 1.3E-13 4.6E-18 120.5 11.1 65 157-223 84-148 (177)
243 1wex_A Hypothetical protein (r 99.5 1.1E-13 3.7E-18 111.2 9.6 61 50-118 12-72 (104)
244 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.1E-13 3.8E-18 114.3 10.0 68 50-119 60-127 (140)
245 2lcw_A RNA-binding protein FUS 99.2 2.7E-15 9.2E-20 121.3 0.0 80 159-243 5-93 (116)
246 2jvr_A Nucleolar protein 3; RN 99.5 4.8E-14 1.7E-18 114.8 7.3 72 51-128 26-99 (111)
247 2fc9_A NCL protein; structure 99.5 6.4E-14 2.2E-18 110.2 7.8 76 159-243 13-89 (101)
248 3ulh_A THO complex subunit 4; 99.5 7E-14 2.4E-18 110.9 8.0 67 50-119 26-92 (107)
249 2fc8_A NCL protein; structure 99.5 9.1E-14 3.1E-18 109.3 8.6 79 157-243 11-90 (102)
250 3lqv_A PRE-mRNA branch site pr 99.5 1.6E-13 5.5E-18 110.3 10.3 61 159-223 6-66 (115)
251 2ytc_A PRE-mRNA-splicing facto 99.5 1.9E-13 6.6E-18 103.8 10.1 58 159-223 10-67 (85)
252 2err_A Ataxin-2-binding protei 99.5 7.5E-14 2.6E-18 112.1 8.1 67 49-119 25-91 (109)
253 2cpx_A Hypothetical protein FL 99.5 1.8E-14 6E-19 115.8 4.4 80 158-242 22-102 (115)
254 2dnq_A RNA-binding protein 4B; 99.5 1.6E-13 5.5E-18 105.8 9.7 72 159-243 6-78 (90)
255 2jwn_A Embryonic polyadenylate 99.5 4.6E-14 1.6E-18 115.0 6.9 64 52-118 35-98 (124)
256 2dgw_A Probable RNA-binding pr 99.5 8.7E-14 3E-18 107.3 8.1 73 51-128 8-81 (91)
257 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.7E-13 5.8E-18 116.2 10.6 68 50-119 36-103 (156)
258 2cpj_A Non-POU domain-containi 99.5 1E-13 3.6E-18 108.7 8.6 74 158-242 12-86 (99)
259 2voo_A Lupus LA protein; RNA-b 99.5 1E-13 3.5E-18 122.7 9.5 68 161-230 109-176 (193)
260 1why_A Hypothetical protein ri 99.5 1.6E-13 5.6E-18 107.2 9.6 59 158-223 14-72 (97)
261 2hgn_A Heterogeneous nuclear r 99.5 2.1E-14 7.1E-19 121.4 4.8 63 50-116 43-105 (139)
262 2a3j_A U1 small nuclear ribonu 99.5 1.3E-13 4.3E-18 114.8 9.3 64 51-119 27-94 (127)
263 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4E-18 115.0 8.8 62 158-223 26-91 (127)
264 2ki2_A SS-DNA binding protein 99.5 2.6E-14 9E-19 109.9 4.4 63 54-119 2-64 (90)
265 2lea_A Serine/arginine-rich sp 99.5 1.1E-13 3.9E-18 115.6 8.3 67 51-119 45-111 (135)
266 2cpx_A Hypothetical protein FL 99.5 1E-13 3.4E-18 111.4 7.5 67 50-119 22-89 (115)
267 1fj7_A Nucleolin RBD1, protein 99.5 2E-14 6.9E-19 113.0 3.3 66 50-119 14-79 (101)
268 2kt5_A RNA and export factor-b 99.5 2.4E-13 8.3E-18 111.0 9.8 67 50-119 32-98 (124)
269 2dgx_A KIAA0430 protein; RRM d 99.4 1.8E-13 6.1E-18 107.2 8.3 72 52-128 8-84 (96)
270 1x5o_A RNA binding motif, sing 99.4 1.6E-13 5.4E-18 110.2 8.1 67 50-119 22-88 (114)
271 2wbr_A GW182, gawky, LD47780P; 99.4 1.8E-13 6.2E-18 107.4 8.1 71 161-242 7-78 (89)
272 2hvz_A Splicing factor, argini 99.4 1.3E-13 4.3E-18 108.5 7.1 71 162-242 1-72 (101)
273 1wg1_A KIAA1579 protein, homol 99.4 1.5E-13 5.1E-18 105.8 7.4 71 160-242 4-75 (88)
274 2jvo_A Nucleolar protein 3; nu 99.4 2E-13 6.9E-18 109.7 8.2 62 48-119 26-87 (108)
275 2cq2_A Hypothetical protein LO 99.4 1.2E-13 4.3E-18 113.2 7.1 59 158-223 22-82 (114)
276 2qfj_A FBP-interacting repress 99.4 2.2E-13 7.6E-18 119.3 9.2 63 160-223 27-89 (216)
277 2e5g_A U6 snRNA-specific termi 99.4 3.6E-13 1.2E-17 104.8 9.4 74 160-243 7-80 (94)
278 2fc8_A NCL protein; structure 99.4 3.2E-13 1.1E-17 106.1 9.1 65 50-119 12-76 (102)
279 2dgu_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 106.3 9.6 73 158-243 8-81 (103)
280 3q2s_C Cleavage and polyadenyl 99.4 1.3E-13 4.6E-18 125.1 7.9 66 52-119 67-134 (229)
281 2e5j_A Methenyltetrahydrofolat 99.4 3.6E-13 1.2E-17 105.3 9.3 59 159-223 17-75 (97)
282 1fjc_A Nucleolin RBD2, protein 99.4 8.9E-14 3E-18 108.2 5.8 63 50-119 13-75 (96)
283 2dnq_A RNA-binding protein 4B; 99.4 4.4E-13 1.5E-17 103.3 9.6 59 51-119 6-64 (90)
284 2e5j_A Methenyltetrahydrofolat 99.4 2.4E-13 8.1E-18 106.4 8.2 62 51-119 17-78 (97)
285 1nu4_A U1A RNA binding domain; 99.4 6.8E-14 2.3E-18 108.9 5.0 61 159-223 6-70 (97)
286 1x4f_A Matrin 3; structural ge 99.4 9.3E-14 3.2E-18 113.5 5.7 59 158-223 22-81 (112)
287 1x4c_A Splicing factor, argini 99.4 6.4E-13 2.2E-17 106.2 10.3 60 51-119 13-72 (108)
288 1nu4_A U1A RNA binding domain; 99.4 1.4E-13 4.9E-18 107.1 6.2 64 51-119 6-73 (97)
289 2la4_A Nuclear and cytoplasmic 99.4 3.1E-13 1.1E-17 106.2 8.2 57 160-223 26-82 (101)
290 2kvi_A Nuclear polyadenylated 99.4 4.6E-13 1.6E-17 104.7 9.1 57 158-223 7-64 (96)
291 1x4g_A Nucleolysin TIAR; struc 99.4 3.2E-13 1.1E-17 107.8 8.3 73 159-242 23-96 (109)
292 1why_A Hypothetical protein ri 99.4 5.9E-13 2E-17 104.0 9.6 62 50-119 14-75 (97)
293 1fjc_A Nucleolin RBD2, protein 99.4 1.2E-13 4.1E-18 107.5 5.5 74 159-242 14-88 (96)
294 2xnq_A Nuclear polyadenylated 99.4 5E-13 1.7E-17 105.1 9.2 60 50-119 19-79 (97)
295 3md3_A Nuclear and cytoplasmic 99.4 2.2E-13 7.6E-18 113.9 7.4 60 162-223 1-60 (166)
296 3beg_B Splicing factor, argini 99.4 2.2E-13 7.6E-18 110.4 7.1 75 160-242 15-91 (115)
297 2cpj_A Non-POU domain-containi 99.4 3.5E-13 1.2E-17 105.6 8.0 61 51-119 13-73 (99)
298 2hzc_A Splicing factor U2AF 65 99.4 2.2E-13 7.4E-18 103.8 6.6 60 51-119 4-74 (87)
299 2ytc_A PRE-mRNA-splicing facto 99.4 4.7E-13 1.6E-17 101.6 8.3 59 51-117 10-68 (85)
300 2e44_A Insulin-like growth fac 99.4 5E-13 1.7E-17 103.9 8.5 76 159-243 13-90 (96)
301 2xnq_A Nuclear polyadenylated 99.4 5.2E-13 1.8E-17 105.0 8.5 57 158-223 19-76 (97)
302 2cq2_A Hypothetical protein LO 99.4 2.3E-13 7.8E-18 111.6 6.6 62 50-119 22-85 (114)
303 2kvi_A Nuclear polyadenylated 99.4 3.5E-13 1.2E-17 105.3 7.4 60 50-119 7-67 (96)
304 2dgt_A RNA-binding protein 30; 99.4 9.5E-13 3.2E-17 101.8 9.6 73 158-243 7-80 (92)
305 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.3E-13 1.1E-17 115.8 7.7 67 51-119 70-136 (165)
306 2hzc_A Splicing factor U2AF 65 99.4 4E-13 1.4E-17 102.3 7.3 63 160-229 5-78 (87)
307 2cpd_A Apobec-1 stimulating pr 99.4 1.7E-12 5.9E-17 101.7 11.0 73 158-243 12-87 (99)
308 2voo_A Lupus LA protein; RNA-b 99.4 4.1E-13 1.4E-17 118.8 8.0 65 53-120 109-173 (193)
309 2la4_A Nuclear and cytoplasmic 99.4 3.7E-13 1.3E-17 105.8 6.8 60 52-119 26-85 (101)
310 1x4g_A Nucleolysin TIAR; struc 99.4 8E-13 2.7E-17 105.5 8.9 62 50-119 22-83 (109)
311 2cqh_A IGF-II mRNA-binding pro 99.4 3.5E-13 1.2E-17 104.3 6.6 60 51-119 6-66 (93)
312 2i2y_A Fusion protein consists 99.4 6.9E-13 2.4E-17 111.7 8.9 63 50-119 70-132 (150)
313 3egn_A RNA-binding protein 40; 99.4 5.9E-14 2E-18 117.4 2.0 65 158-223 42-111 (143)
314 1wf1_A RNA-binding protein RAL 99.4 1.5E-12 5.2E-17 104.0 10.1 59 51-119 25-84 (110)
315 2wbr_A GW182, gawky, LD47780P; 99.4 5.9E-13 2E-17 104.5 7.1 60 52-119 6-65 (89)
316 2dnp_A RNA-binding protein 14; 99.4 1.3E-12 4.6E-17 100.6 9.0 60 50-119 6-65 (90)
317 2lcw_A RNA-binding protein FUS 99.1 4E-14 1.4E-18 114.3 0.0 67 51-119 5-79 (116)
318 2cpd_A Apobec-1 stimulating pr 99.4 2.9E-12 1E-16 100.3 10.7 69 50-128 12-83 (99)
319 2jvo_A Nucleolar protein 3; nu 99.4 8.4E-13 2.9E-17 106.1 7.7 71 159-242 29-100 (108)
320 2g4b_A Splicing factor U2AF 65 99.4 1.4E-12 4.8E-17 110.2 9.5 102 15-119 53-158 (172)
321 2dgu_A Heterogeneous nuclear r 99.4 1.2E-12 4.3E-17 103.3 8.5 58 52-119 10-67 (103)
322 1wf1_A RNA-binding protein RAL 99.4 1.2E-12 4.1E-17 104.6 8.4 56 159-223 25-81 (110)
323 2cqh_A IGF-II mRNA-binding pro 99.4 5.1E-13 1.8E-17 103.4 6.0 73 159-243 6-81 (93)
324 3egn_A RNA-binding protein 40; 99.4 3E-13 1E-17 113.1 4.7 70 50-119 42-114 (143)
325 1wg1_A KIAA1579 protein, homol 99.4 8.5E-13 2.9E-17 101.5 6.7 69 51-128 3-72 (88)
326 2dnp_A RNA-binding protein 14; 99.4 1.5E-12 5.3E-17 100.2 8.2 71 159-242 7-78 (90)
327 1whx_A Hypothetical protein ri 99.4 1.3E-12 4.3E-17 105.4 7.9 59 53-119 10-68 (111)
328 3pgw_S U1-70K; protein-RNA com 99.4 2.4E-12 8.4E-17 127.4 11.2 77 50-128 99-176 (437)
329 2j8a_A Histone-lysine N-methyl 99.4 1E-12 3.4E-17 110.2 7.0 63 54-118 3-77 (136)
330 2e5g_A U6 snRNA-specific termi 99.3 1.9E-12 6.6E-17 100.6 8.2 59 52-118 7-65 (94)
331 1whx_A Hypothetical protein ri 99.3 1.1E-12 3.6E-17 105.8 6.9 56 161-223 10-65 (111)
332 3beg_B Splicing factor, argini 99.3 9.5E-13 3.2E-17 106.7 6.4 59 52-119 15-73 (115)
333 2dgt_A RNA-binding protein 30; 99.3 2.6E-12 9E-17 99.3 8.6 60 50-119 7-66 (92)
334 1x5p_A Negative elongation fac 99.3 7.7E-12 2.6E-16 97.7 11.3 73 158-243 12-85 (97)
335 2f3j_A RNA and export factor b 99.3 1.8E-12 6.2E-17 113.2 8.6 66 51-119 86-151 (177)
336 1x5p_A Negative elongation fac 99.3 1E-11 3.5E-16 97.0 9.7 69 50-128 12-81 (97)
337 1sjr_A Polypyrimidine tract-bi 99.3 1.2E-11 4.2E-16 107.4 11.1 61 54-120 47-107 (164)
338 2e44_A Insulin-like growth fac 99.3 9E-12 3.1E-16 96.7 9.2 63 51-119 13-76 (96)
339 1fje_B Nucleolin RBD12, protei 99.3 7.6E-13 2.6E-17 112.5 3.3 79 159-243 11-89 (175)
340 3tyt_A Heterogeneous nuclear r 99.3 4.5E-12 1.5E-16 113.0 8.0 58 160-223 3-61 (205)
341 2yh0_A Splicing factor U2AF 65 99.3 7.1E-12 2.4E-16 108.2 8.4 67 51-119 112-178 (198)
342 1sjr_A Polypyrimidine tract-bi 99.3 1.3E-11 4.6E-16 107.1 10.1 57 162-223 47-103 (164)
343 2pe8_A Splicing factor 45; RRM 99.3 1.5E-11 5E-16 98.9 9.5 79 159-242 6-91 (105)
344 3pgw_A U1-A; protein-RNA compl 99.3 1E-11 3.4E-16 113.9 9.1 62 158-223 6-71 (282)
345 2diu_A KIAA0430 protein; struc 99.3 1.3E-11 4.4E-16 98.0 7.9 69 159-242 6-81 (96)
346 2adc_A Polypyrimidine tract-bi 99.3 1E-11 3.4E-16 111.5 8.2 60 158-223 31-91 (229)
347 3zzy_A Polypyrimidine tract-bi 99.3 1.1E-11 3.8E-16 103.8 7.8 56 162-223 29-85 (130)
348 2bz2_A Negative elongation fac 99.2 1.5E-11 5.1E-16 100.9 8.5 56 159-223 37-92 (121)
349 3zzy_A Polypyrimidine tract-bi 99.2 2.3E-11 7.8E-16 101.9 9.2 68 55-129 30-101 (130)
350 3sde_A Paraspeckle component 1 99.2 8.3E-12 2.8E-16 114.3 7.0 99 15-118 60-158 (261)
351 3u1l_A PRE-mRNA-splicing facto 99.2 1.5E-11 5.3E-16 112.8 8.3 58 159-223 132-198 (240)
352 2e5i_A Heterogeneous nuclear r 99.2 5.3E-11 1.8E-15 98.7 9.6 58 55-120 27-85 (124)
353 2e5i_A Heterogeneous nuclear r 99.2 3.4E-11 1.2E-15 99.9 8.0 55 162-223 26-81 (124)
354 1qm9_A Polypyrimidine tract-bi 99.2 2.4E-11 8.2E-16 105.5 7.1 57 161-223 3-60 (198)
355 2bz2_A Negative elongation fac 99.2 5E-11 1.7E-15 97.8 8.4 60 50-119 36-95 (121)
356 3tht_A Alkylated DNA repair pr 99.1 5.2E-11 1.8E-15 114.6 7.6 58 159-223 16-75 (345)
357 2diu_A KIAA0430 protein; struc 99.1 2.2E-10 7.7E-15 90.8 9.1 57 52-120 7-69 (96)
358 3tht_A Alkylated DNA repair pr 99.1 8.4E-11 2.9E-15 113.2 8.0 65 48-120 13-79 (345)
359 2pe8_A Splicing factor 45; RRM 99.1 1.9E-10 6.6E-15 92.3 8.6 69 50-119 5-78 (105)
360 3u1l_A PRE-mRNA-splicing facto 99.1 6E-11 2E-15 108.9 6.1 61 51-119 132-201 (240)
361 1jmt_A Splicing factor U2AF 35 99.1 5.2E-11 1.8E-15 95.3 5.0 57 165-223 19-87 (104)
362 2dit_A HIV TAT specific factor 99.1 5.1E-10 1.7E-14 89.9 9.7 60 159-223 13-83 (112)
363 3v4m_A Splicing factor U2AF 65 99.1 3.2E-10 1.1E-14 90.9 8.0 79 159-242 3-94 (105)
364 1jmt_A Splicing factor U2AF 35 99.0 8.9E-11 3E-15 93.9 2.1 60 57-119 19-90 (104)
365 3ue2_A Poly(U)-binding-splicin 99.0 8.5E-10 2.9E-14 90.5 7.6 78 160-242 19-106 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.0 9.3E-10 3.2E-14 87.8 7.3 48 170-223 26-73 (100)
367 2d9o_A DNAJ (HSP40) homolog, s 99.0 2.3E-09 7.8E-14 85.5 9.0 50 63-119 27-76 (100)
368 2dit_A HIV TAT specific factor 99.0 2.5E-09 8.7E-14 85.8 9.1 64 50-119 12-86 (112)
369 3v4m_A Splicing factor U2AF 65 98.9 2.9E-09 9.8E-14 85.3 7.5 69 51-119 3-81 (105)
370 1owx_A Lupus LA protein, SS-B, 98.8 1.5E-08 5.1E-13 83.7 8.6 67 157-230 14-85 (121)
371 3ue2_A Poly(U)-binding-splicin 98.7 1.2E-08 4.2E-13 83.5 6.5 68 52-119 19-93 (118)
372 1owx_A Lupus LA protein, SS-B, 98.6 1.5E-07 5E-12 77.7 8.0 59 52-118 17-77 (121)
373 3s6e_A RNA-binding protein 39; 98.5 9.1E-08 3.1E-12 77.9 5.9 45 174-223 30-74 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.5 2.8E-07 9.6E-12 72.3 7.3 62 159-229 5-74 (91)
375 3s6e_A RNA-binding protein 39; 98.4 4.2E-07 1.4E-11 74.0 5.4 47 67-119 31-77 (114)
376 1ufw_A Synaptojanin 2; RNP dom 98.3 5E-07 1.7E-11 71.4 5.3 63 158-229 12-83 (95)
377 3dxb_A Thioredoxin N-terminall 98.2 3E-06 1E-10 75.1 7.2 65 173-242 141-210 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.0 1.4E-05 4.7E-10 62.7 6.2 68 52-129 6-81 (91)
379 3dxb_A Thioredoxin N-terminall 97.9 7.2E-06 2.5E-10 72.7 4.5 56 64-119 140-197 (222)
380 2dhx_A Poly (ADP-ribose) polym 97.9 0.00011 3.7E-09 58.8 10.1 83 160-254 7-93 (104)
381 1ufw_A Synaptojanin 2; RNP dom 97.8 2.8E-05 9.6E-10 61.3 5.6 69 51-129 13-90 (95)
382 1whv_A Poly(A)-specific ribonu 97.4 0.00041 1.4E-08 54.9 7.0 58 50-117 12-69 (100)
383 3ctr_A Poly(A)-specific ribonu 97.1 0.00031 1.1E-08 55.8 3.6 54 53-116 5-58 (101)
384 2dhx_A Poly (ADP-ribose) polym 97.0 0.0031 1.1E-07 50.4 8.8 90 50-174 5-99 (104)
385 1uw4_A UPF3X; nonsense mediate 96.1 0.026 8.9E-07 43.9 8.2 80 162-242 2-87 (91)
386 3pq1_A Poly(A) RNA polymerase; 95.7 0.0033 1.1E-07 62.5 2.2 58 52-117 52-109 (464)
387 3pq1_A Poly(A) RNA polymerase; 95.7 0.0054 1.8E-07 61.0 3.6 59 160-225 52-110 (464)
388 2l9w_A U4/U6 snRNA-associated- 95.7 0.034 1.2E-06 44.9 7.6 55 160-221 20-79 (117)
389 1uw4_A UPF3X; nonsense mediate 95.5 0.042 1.4E-06 42.7 7.2 63 54-118 2-66 (91)
390 1whv_A Poly(A)-specific ribonu 95.3 0.046 1.6E-06 43.2 6.8 54 161-223 15-68 (100)
391 3ctr_A Poly(A)-specific ribonu 94.0 0.053 1.8E-06 42.9 4.2 53 162-223 6-58 (101)
392 1wwh_A Nucleoporin 35, nucleop 93.8 0.3 1E-05 39.8 8.5 75 161-247 24-98 (119)
393 2l08_A Regulator of nonsense t 93.8 0.088 3E-06 41.4 5.1 81 161-242 9-95 (97)
394 2l08_A Regulator of nonsense t 93.4 0.23 7.8E-06 39.1 7.0 64 53-118 9-74 (97)
395 2l9w_A U4/U6 snRNA-associated- 92.9 0.4 1.4E-05 38.7 7.8 71 51-129 19-95 (117)
396 3p3d_A Nucleoporin 53; structu 92.6 0.13 4.5E-06 42.6 4.8 69 50-119 4-84 (132)
397 1wwh_A Nucleoporin 35, nucleop 91.6 0.37 1.3E-05 39.2 6.2 58 53-119 24-81 (119)
398 3p3d_A Nucleoporin 53; structu 89.6 0.47 1.6E-05 39.3 5.2 77 161-243 7-97 (132)
399 3d45_A Poly(A)-specific ribonu 88.7 0.77 2.6E-05 45.9 7.1 55 54-118 440-494 (507)
400 2d8v_A Zinc finger FYVE domain 84.9 0.45 1.5E-05 34.7 2.1 44 245-296 7-51 (67)
401 3d45_A Poly(A)-specific ribonu 80.2 3.7 0.00013 40.9 7.5 52 162-223 441-492 (507)
402 1wey_A Calcipressin 1; structu 79.0 4.6 0.00016 31.9 6.2 54 161-221 5-63 (104)
403 1wey_A Calcipressin 1; structu 68.0 11 0.00037 29.8 5.8 60 53-120 5-69 (104)
404 3nmw_A APC variant protein; AR 50.7 4.3 0.00015 38.2 0.9 16 272-287 16-31 (354)
405 2cr8_A MDM4 protein; ZF-ranbp 44.3 5 0.00017 27.7 0.1 27 245-284 10-36 (53)
406 2c6a_A Ubiquitin-protein ligas 41.5 5.4 0.00018 26.9 -0.1 26 245-283 12-37 (46)
407 3lpe_A Putative transcription 37.4 43 0.0015 25.2 4.5 21 96-116 49-69 (92)
408 2ffw_A Midline-1; B-BOX, ring 36.9 27 0.00093 25.5 3.2 46 245-294 29-75 (78)
409 3ts2_A Protein LIN-28 homolog 33.9 7.2 0.00025 32.4 -0.5 35 246-285 97-131 (148)
410 2yb5_A FUSC, putative fusidic 30.5 7.3 0.00025 34.7 -1.1 91 173-274 90-200 (215)
411 3j21_T 50S ribosomal protein L 29.5 90 0.0031 23.5 5.1 53 163-220 24-79 (86)
412 1wim_A KIAA0161 protein; ring 27.1 25 0.00087 26.0 1.6 36 245-285 4-40 (94)
413 4adn_A FAR1; antibiotic resist 25.2 7.5 0.00026 34.7 -2.0 92 172-274 97-207 (222)
414 2fc7_A ZZZ3 protein; structure 24.4 35 0.0012 25.4 2.0 35 246-284 21-59 (82)
415 2jun_A Midline-1; B-BOX, TRIM, 24.0 53 0.0018 24.4 3.0 45 245-293 2-47 (101)
416 3swz_A Steroid 17-alpha-hydrox 22.2 70 0.0024 30.0 4.1 53 163-225 16-72 (494)
417 3r8s_T 50S ribosomal protein L 22.1 1.5E+02 0.0051 22.6 5.2 35 163-197 28-63 (93)
418 1ldd_A APC2WHB, anaphase promo 20.2 62 0.0021 23.8 2.5 18 59-76 38-56 (74)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2e-32 Score=237.98 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=133.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
+.++|||||||+++|+++|+++|++||+|..+.+.++. .+++++|||||.|.++++|++||+......++..+.+...
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP--NTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcC--CCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 46799999999999999999999999999977776653 4689999999999999999999987444333333333211
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
.. +... .......+.++|||+|||.++|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|
T Consensus 90 ~~--~~~~-------------~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F 153 (196)
T 1l3k_A 90 VS--REDS-------------QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTF 153 (196)
T ss_dssp CC--------------------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred cC--cccc-------------cccccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEE
Confidence 00 0000 00112234589999999999999999999998 99999999999999999999999999
Q ss_pred cCHHHHHHHHHhcccccccCccceEEEecccccccccc
Q psy11409 212 ASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMC 249 (320)
Q Consensus 212 ~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~~~~~~c 249 (320)
.+.++|.+||+.....+.+ +.|+|+...+++++.
T Consensus 154 ~~~~~A~~A~~~~~~~~~G----~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 154 DDHDSVDKIVIQKYHTVNG----HNCEVRKALSKQEMA 187 (196)
T ss_dssp SSHHHHHHHHHCSCCEETT----EECEEEECC------
T ss_pred CCHHHHHHHHHhCCcEECC----EEEEEEecCChhHhc
Confidence 9999999999865444543 577888776666543
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.9e-32 Score=232.45 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=129.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSP 131 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~ 131 (320)
++++|||||||+++|+++|+++|++||+|..+.+.++. .+|+++|||||.|.++++|++||+.. +..++..+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v--- 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP--ATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDP--- 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT--TTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCC---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC--CCCCccceEEEEEccHHHHHHHHhcc-cccCCeEccc---
Confidence 46799999999999999999999999999987776653 46899999999999999999999853 2222222221
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
..... .....+..+|||+|||.++|+++|+++|++ ||.|.++.|+.|+.+|.++|||||+|
T Consensus 76 ---------~~~~~---------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f 136 (167)
T 2cjk_A 76 ---------KRAIP---------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTY 136 (167)
T ss_dssp ---------EECCC---------HHHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEE
T ss_pred ---------ccccc---------hhhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEE
Confidence 11000 001124579999999999999999999999 99999999999999999999999999
Q ss_pred cCHHHHHHHHHhcccccccCccceEEEecccc
Q psy11409 212 ASQASYIAAISARFVQLQHGEIDKRVEVKPYV 243 (320)
Q Consensus 212 ~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy~ 243 (320)
.+.++|.+|++.....+.+ ++|+|+...
T Consensus 137 ~~~~~a~~A~~~~~~~~~g----~~i~V~~a~ 164 (167)
T 2cjk_A 137 DSADAVDRVCQNKFIDFKD----RKIEIKRAE 164 (167)
T ss_dssp SSHHHHHHHHHCSEECSSS----SCEEEEECC
T ss_pred CCHHHHHHHHhCCCEEeCC----eEEEEeecC
Confidence 9999999999854444443 466666553
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=4.1e-31 Score=236.17 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=128.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki 128 (320)
+.|..+|||||||+++||++|+++|++||+|..+.++++. .+++++|||||.|.++++|++||+..++. ..+..+++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM--ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeccc--CCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 4567899999999999999999999999999977776654 46899999999999999999999887653 22222222
Q ss_pred cCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEE
Q psy11409 129 SSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGR 208 (320)
Q Consensus 129 s~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgf 208 (320)
..... . .........+|||+|||+.+|+++|+++|++ ||.|..+.|++|+ +.+|||||
T Consensus 90 ~~~~~--~-----------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~--~~~~g~~f 147 (213)
T 4f02_A 90 MWSQR--D-----------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGF 147 (213)
T ss_dssp EECCC--C-----------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEE
T ss_pred ccccc--c-----------------ccccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccC--CCCceEEE
Confidence 11000 0 0001123478999999999999999999999 9999999999995 45899999
Q ss_pred EEecCHHHHHHHHHh-cccccccCccceEEEecccccc
Q psy11409 209 VAFASQASYIAAISA-RFVQLQHGEIDKRVEVKPYVLD 245 (320)
Q Consensus 209 VtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ikpy~~~ 245 (320)
|+|.+.++|.+||+. .-..|. .++|.|+.+.++
T Consensus 148 V~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~~ 181 (213)
T 4f02_A 148 VHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKSR 181 (213)
T ss_dssp EEESSHHHHHHHHHHHTTCEET----TEECEEEECCCH
T ss_pred EEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCCC
Confidence 999999999999975 223333 357777776543
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=5.4e-30 Score=217.14 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=122.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
++++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||.|.++++|++|++..+.. .++..+++.-
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY--KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET--TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC--CCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 57899999999999999999999999999977666653 46899999999999999999999865432 2222222211
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
.. +.....+..+|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|+|||+
T Consensus 80 ------------~~---------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~ 137 (168)
T 1b7f_A 80 ------------AR---------PGGESIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVR 137 (168)
T ss_dssp ------------CC---------CCSSTTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ------------cC---------CCcccCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEE
Confidence 00 0111234689999999999999999999999 9999999999999899999999999
Q ss_pred ecCHHHHHHHHHh
Q psy11409 211 FASQASYIAAISA 223 (320)
Q Consensus 211 F~~~esa~kAi~~ 223 (320)
|.+.++|.+|++.
T Consensus 138 f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 138 YNKREEAQEAISA 150 (168)
T ss_dssp ESSHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9999999999974
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=6.9e-30 Score=215.51 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=122.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
++++|||+|||+++|+++|+++|++||+|..+...++. .+|+++|||||.|.++++|++||+..++. .++..+++..
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~--~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK--ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 46799999999999999999999999999976666653 46899999999999999999999865542 2222222211
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
.. +.....+..+|||+|||..+|+++|+++|++ ||.|..+.|..|+.+|.++|+|||+
T Consensus 79 ------------~~---------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 79 ------------AR---------PSSASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp ------------CC---------CCCGGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ------------cC---------CCcccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEE
Confidence 00 0011124578999999999999999999999 9999999999999999999999999
Q ss_pred ecCHHHHHHHHHh
Q psy11409 211 FASQASYIAAISA 223 (320)
Q Consensus 211 F~~~esa~kAi~~ 223 (320)
|.+.++|.+|++.
T Consensus 137 f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 137 FDKRIEAEEAIKG 149 (167)
T ss_dssp ESSHHHHHHHHHH
T ss_pred eCCHHHHHHHHHH
Confidence 9999999999984
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2.3e-30 Score=220.47 Aligned_cols=153 Identities=17% Similarity=0.243 Sum_probs=120.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPT 132 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~ 132 (320)
+++|||||||+++|+++|+++|++||+|..+.+.++....+++++|||||.|.++++|++|++..++.. +. .
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~------~~--~ 74 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMK------VL--P 74 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTC------CC--T
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcE------Ec--c
Confidence 569999999999999999999999999997766665432223899999999999999999998765421 00 0
Q ss_pred ccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 133 IKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
...+.+.+.+... ......+.++|||+|||.++|+++|+++|++ ||.|..+.|+.|+ +|.++|||||+|.
T Consensus 75 ~~~~~~~~~~~~~--------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 75 GMHHPIQMKPADS--------EKNNAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp TCSSCCEEEECGG--------GCCSCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred CCccceEEccccc--------cccccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 0112222221110 1112234689999999999999999999999 9999999999996 7999999999999
Q ss_pred CHHHHHHHHHh
Q psy11409 213 SQASYIAAISA 223 (320)
Q Consensus 213 ~~esa~kAi~~ 223 (320)
+.++|.+|++.
T Consensus 145 ~~~~A~~A~~~ 155 (175)
T 3nmr_A 145 TRAMAQTAIKA 155 (175)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999975
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-30 Score=216.43 Aligned_cols=147 Identities=13% Similarity=0.085 Sum_probs=120.4
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCCC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSPT 132 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~~ 132 (320)
++|||+|||+++|+++|+++|++||+|..+...++. +++++|||||.|.++++|++|++..+.. .++..+++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~-- 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK---NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC---C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE--
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC---CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE--
Confidence 589999999999999999999999999977666653 3789999999999999999999765542 2222222211
Q ss_pred ccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEec
Q psy11409 133 IKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFA 212 (320)
Q Consensus 133 ~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~ 212 (320)
... .......+..+|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|+|||+|.
T Consensus 76 ----------~~~-------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~ 137 (166)
T 3md3_A 76 ----------AFQ-------SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFT 137 (166)
T ss_dssp ----------CCC-------CCCCCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEES
T ss_pred ----------cCC-------CCCCCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeC
Confidence 000 01122345689999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHh
Q psy11409 213 SQASYIAAISA 223 (320)
Q Consensus 213 ~~esa~kAi~~ 223 (320)
+.++|.+|++.
T Consensus 138 ~~~~A~~A~~~ 148 (166)
T 3md3_A 138 SQDDAQNAMDS 148 (166)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999974
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4.1e-29 Score=220.27 Aligned_cols=173 Identities=16% Similarity=0.200 Sum_probs=128.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc-CCCceEEEecCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV-DEDKCYLCVSSP 131 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~-~~~~~~vkis~~ 131 (320)
.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||.|.++++|++||+..+. ..++..|++..+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS--VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC---CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC--CCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 5699999999999999999999999999977666553 4689999999999999999999996544 233333333221
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEe
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAF 211 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF 211 (320)
..... ..|-. ........+.++|||+|||.++|+++|+++|++ ||.|..+.|+.|+.++.++|+|||+|
T Consensus 106 ~~~~~---~~~~~-------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F 174 (216)
T 2qfj_A 106 SNIGQ---AQPII-------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEY 174 (216)
T ss_dssp SCCGG---GHHHH-------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCccc---cchhh-------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEe
Confidence 10000 00000 000011235689999999999999999999999 99999999999999999999999999
Q ss_pred cCHHHHHHHHHh-cccccccCccceEEEeccc
Q psy11409 212 ASQASYIAAISA-RFVQLQHGEIDKRVEVKPY 242 (320)
Q Consensus 212 ~~~esa~kAi~~-~~~~i~~~~~~k~v~ikpy 242 (320)
.+.++|.+|++. .-..+.+ +.|+|...
T Consensus 175 ~~~~~A~~A~~~l~g~~~~g----~~i~V~~a 202 (216)
T 2qfj_A 175 EKAQSSQDAVSSMNLFDLGG----QYLRVGKA 202 (216)
T ss_dssp SSHHHHHHHHHHHTTCBCSS----SBCEEEEC
T ss_pred cCHHHHHHHHHHccCCEeCC----cEEEEEEe
Confidence 999999999984 2233433 34555544
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=3.8e-28 Score=211.28 Aligned_cols=182 Identities=17% Similarity=0.119 Sum_probs=126.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEec-----ccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEE
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDW-----PHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYL 126 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~-----p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~v 126 (320)
.+++|||||||+++|+++|+++|++||.|...+ ++.+ ...++++|||||.|.++++|++||+......++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~--~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEE--EEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEE--eEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 467999999999999999999999996443211 1111 123678999999999999999999433333455555
Q ss_pred EecCCCccC--CCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcc
Q psy11409 127 CVSSPTIKD--KPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPK 204 (320)
Q Consensus 127 kis~~~~~~--K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pk 204 (320)
++....... ......+..... .........+.++|||+|||..+|+++|+++|++ ||.|..+.|..|++++.++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVP---GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCT---TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCC---CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCcc
Confidence 554321110 000000000000 0001122345689999999999999999999999 9999999999999999999
Q ss_pred eEEEEEecCHHHHHHHHHh-cccccccCccceEEEecccc
Q psy11409 205 GAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEVKPYV 243 (320)
Q Consensus 205 GfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ikpy~ 243 (320)
|||||+|.+.++|.+|++. .-..+. .+.|+|....
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 192 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRAS 192 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECC
Confidence 9999999999999999984 222333 3466666553
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.2e-28 Score=210.00 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=113.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccC----C-------CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc-
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRF----G-------PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV- 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~F----G-------~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~- 119 (320)
++++|||||||+++|+++|+++|++| | .|..+. .++++|||||.|.++++|++|| ..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~--------~~~~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--------INQDKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE--------EETTTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE--------ecCCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 35799999999999999999999999 5 444322 3567999999999999999999 4332
Q ss_pred CCCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCC
Q psy11409 120 DEDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPE 199 (320)
Q Consensus 120 ~~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~ 199 (320)
..++..+++..+. ........++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.
T Consensus 74 ~~~g~~i~v~~~~---------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 74 IFQGQSLKIRRPH---------------------DYQPLPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSA 131 (172)
T ss_dssp EETTEECEEECCS---------------------SCCCCTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTT
T ss_pred EecCceeeecCCc---------------------ccCCCCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCC
Confidence 2233333332110 0111234689999999999999999999999 99999999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHh
Q psy11409 200 LKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 200 tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+|.++|+|||+|.+.++|.+|++.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCcceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999984
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=5e-27 Score=210.21 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=124.6
Q ss_pred CCCcEEEcCCC-CCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEE
Q psy11409 52 PSPPQFPLQGT-PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLC 127 (320)
Q Consensus 52 ~~~kvFVGgLp-~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vk 127 (320)
++.+||||||| +++|+++|+++|++||+|..+.++++ +||||||.|+++++|++||+..++. +..+.|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-------STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 46799999999 89999999999999999997665442 4799999999999999999877653 3344444
Q ss_pred ecCCCccCCCccccccc---cCC-----cccccC------------CCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCC
Q psy11409 128 VSSPTIKDKPVQIRPWK---LTD-----ADFVLD------------ASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYG 187 (320)
Q Consensus 128 is~~~~~~K~vqvrPw~---~~d-----~~y~~~------------~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG 187 (320)
.+.... ..|+. ..+ ..|... ......|.++|||+|||+++|+++|+++|++ ||
T Consensus 76 ~s~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G 148 (205)
T 3tyt_A 76 VSKQPA------IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LG 148 (205)
T ss_dssp ECSCSC------CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HT
T ss_pred EccCCc------cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cC
Confidence 442110 01211 000 011110 0112346789999999999999999999999 99
Q ss_pred Ce--eEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc-cccccCccceEE
Q psy11409 188 GV--CYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF-VQLQHGEIDKRV 237 (320)
Q Consensus 188 ~V--~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~-~~i~~~~~~k~v 237 (320)
.| ..++|+.|+ +.++|+|||+|.+.++|.+||..-. ..|.+......+
T Consensus 149 ~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 149 VKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 99 899999985 6678999999999999999997532 345544443333
No 12
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.5e-27 Score=219.45 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=122.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEec
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVS 129 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis 129 (320)
.+..+|||||||+++|+++|+++|++||.|..+.+. +++|||||.|.+.++|++||...++. .+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~--------~~kg~afV~f~~~~~A~~A~~~l~g~~i~------- 84 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN--------RDRGFGFIRLESRTLAEIAKAELDGTILK------- 84 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE--------TTTTEEEEECSSHHHHHHHHHHHTTCEET-------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe--------CCCcEEEEEECCHHHHHHHHHHcCCcEEC-------
Confidence 445799999999999999999999999999876553 46899999999999999999865432 12
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
++.+.+... .+..+|||+|||..+|+++|+++|++ ||.|..|.|+.| .+|.++|||||
T Consensus 85 -----g~~l~v~~a---------------~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~g~~~g~afV 142 (261)
T 3sde_A 85 -----SRPLRIRFA---------------THGAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVD-DRGRATGKGFV 142 (261)
T ss_dssp -----TEECEEEEC---------------CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-TTSCEEEEEEE
T ss_pred -----CceeEeeec---------------ccCCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeC-CCCCcCcEEEE
Confidence 222222211 23579999999999999999999999 999999999999 59999999999
Q ss_pred EecCHHHHHHHHHhc-ccccccCccceEEEecccc
Q psy11409 210 AFASQASYIAAISAR-FVQLQHGEIDKRVEVKPYV 243 (320)
Q Consensus 210 tF~~~esa~kAi~~~-~~~i~~~~~~k~v~ikpy~ 243 (320)
+|.+.++|.+||+.- .-.+......+.|.|+++.
T Consensus 143 ~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 143 EFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred EeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 999999999999752 1011111224566666664
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=6.6e-28 Score=206.57 Aligned_cols=161 Identities=10% Similarity=0.056 Sum_probs=121.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
..++++|||||||+++|+++|+++|++||.|....+ .+ ..+++++|||||.|.++++|++||+......++..+++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VD--VRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CE--EEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EE--CCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 345779999999999999999999999998865222 22 135889999999999999999999633333344444443
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRV 209 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfV 209 (320)
.... + ......+.++|||+|||..+|+++|+++|++ ||.|..+ ..++.++|+|||
T Consensus 87 ~~~~--~-----------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV 141 (175)
T 1fje_B 87 KPKG--R-----------------DSKKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYI 141 (175)
T ss_dssp CCCC--S-----------------SCSTTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE-----CSSSSCCSEEEE
T ss_pred cCCC--c-----------------cccccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe-----cCCCCCceEEEE
Confidence 2111 0 0112234589999999999999999999999 9998766 469999999999
Q ss_pred EecCHHHHHHHHHh-cccccccCccceEEEeccc
Q psy11409 210 AFASQASYIAAISA-RFVQLQHGEIDKRVEVKPY 242 (320)
Q Consensus 210 tF~~~esa~kAi~~-~~~~i~~~~~~k~v~ikpy 242 (320)
+|.+.++|.+|++. .-..+.+ +.|.|...
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~a 171 (175)
T 1fje_B 142 EFKSEADAEKNLEEKQGAEIDG----RSVSLYYT 171 (175)
T ss_dssp ECSSHHHHHHHHHHHTEEEETT----EEEEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEECC----eEEEEEec
Confidence 99999999999985 2233432 45666544
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1e-26 Score=214.65 Aligned_cols=200 Identities=12% Similarity=0.071 Sum_probs=148.3
Q ss_pred CccCCCCcchhhHHHHHHhhhhcCCCCCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCC
Q psy11409 15 YISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYF 94 (320)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg 94 (320)
|+-+-..++..++..+..+++..... ..=....+.+..+|||+|||+++|+++|+++|++||.|..+.+.++. .+|
T Consensus 59 ~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~--~~g 134 (284)
T 3smz_A 59 TAFVTLLNGEQAEAAINAFHQSRLRE--RELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE--RTG 134 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCeeCC--eEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC--CCC
Confidence 54555667778888888777766552 11111234567899999999999999999999999999976655543 468
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccc
Q psy11409 95 PPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPL 173 (320)
Q Consensus 95 ~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~ 173 (320)
+++|||||.|.++++|++|++..+.. .++..+.+.-.. .+. ......+.++|||+|||..+
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~--~~~----------------~~~~~~~~~~l~v~nlp~~~ 196 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD--AGQ----------------LTPALLHSRCLCVDRLPPGF 196 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--GGG----------------CCTTTTSCSEEEEECCCTTC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC--CCC----------------CCcccCCccEEEEecCCccc
Confidence 99999999999999999999765542 233333332110 000 01122356899999999995
Q ss_pred -hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEEeccc
Q psy11409 174 -KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEVKPY 242 (320)
Q Consensus 174 -TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ikpy 242 (320)
|+++|+++|++ ||.|.++.|+.|+ +|.++|+|||+|.+.++|.+|++. .-..+. .+.|.|.-+
T Consensus 197 ~~~~~l~~~f~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 261 (284)
T 3smz_A 197 NDVDALCRALSA-VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFC 261 (284)
T ss_dssp CCHHHHHHHTCS-SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred CCHHHHHHHhhC-CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEe
Confidence 99999999999 9999999999996 899999999999999999999984 222332 245555544
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.5e-26 Score=214.25 Aligned_cols=202 Identities=11% Similarity=0.122 Sum_probs=138.7
Q ss_pred CCCccCCCCcchhhHHHHHHhhhhcCCCCCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCC-CeEEecccccCCC
Q psy11409 13 SPYISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFG-PLVVDWPHKAESK 91 (320)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG-~V~v~~p~k~~~~ 91 (320)
..|+-+-..++..++..++ .++..... ....-...+..+|||+|||+++|+++|+++|++|| +|..+.+.++.
T Consensus 81 ~g~afV~f~~~~~A~~A~~-~~~~~~~g---~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-- 154 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAIT-KTHKVVGQ---NEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-- 154 (292)
T ss_dssp SEEEEEEESSHHHHHHHHT-TTTCEETT---EECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----
T ss_pred cEEEEEEECCHHHHHHHHH-hCCcEeCC---cEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC--
Confidence 3455555667777777774 44443332 11111124578999999999999999999999999 99876665543
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe--cCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcC
Q psy11409 92 SYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV--SSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGG 168 (320)
Q Consensus 92 ~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki--s~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGn 168 (320)
.++++|||||.|.++++|++||+..+.. .++..+.+ +.+..... + ......+.++|||+|
T Consensus 155 -~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~----~------------~~~~~~~~~~l~v~n 217 (292)
T 2ghp_A 155 -FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK----R------------TDSATLEGREIMIRN 217 (292)
T ss_dssp -----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------CCTTTEEEEEE
T ss_pred -CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc----c------------ccccCCCCceEEEEC
Confidence 3789999999999999999999965542 23333333 22211000 0 012234568999999
Q ss_pred CCcc-chHHHHHHHHhhhCCCeeEEEEecCCC-CCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEeccc
Q psy11409 169 VPRP-LKALELAMIMDRLYGGVCYAGIDTDPE-LKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPY 242 (320)
Q Consensus 169 Lp~~-~TeedL~~~F~~~fG~V~~v~I~~D~~-tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ikpy 242 (320)
||.. +|+++|+++|++ ||.|..|.|+.|+. ||.++|||||+|.+.++|.+|+...-..+. .+.|+|.-.
T Consensus 218 lp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~----g~~i~V~~a 288 (292)
T 2ghp_A 218 LSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLG----NREISVSLA 288 (292)
T ss_dssp ECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEET----TEEEEEEEC
T ss_pred CCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEEC----CcEEEEEEe
Confidence 9999 999999999999 99999999999986 699999999999999999999832223333 356666544
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.8e-26 Score=211.68 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=114.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSS 130 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~ 130 (320)
++++|||+|||+++|+++|+++|++|| |..+.. ++++|||||.|.++++|++||+..+.. .++..+++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v-- 89 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV-- 89 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE--
Confidence 467999999999999999999999999 775543 468899999999999999999875532 12222222
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEE
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 210 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVt 210 (320)
. | ..+..+|||+|||+++|+++|+++|++ ||.|..+.|+.|+.+|.++|+|||+
T Consensus 90 ----------~-~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~ 143 (284)
T 3smz_A 90 ----------Q-L--------------QPTDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAE 143 (284)
T ss_dssp ----------E-E--------------CCCSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ----------E-e--------------cCCCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEE
Confidence 1 0 123579999999999999999999999 9999999999999999999999999
Q ss_pred ecCHHHHHHHHHh
Q psy11409 211 FASQASYIAAISA 223 (320)
Q Consensus 211 F~~~esa~kAi~~ 223 (320)
|.+.++|.+|++.
T Consensus 144 f~~~~~a~~A~~~ 156 (284)
T 3smz_A 144 YMKKDSAARAKSD 156 (284)
T ss_dssp ESSHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9999999999954
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=2.9e-25 Score=204.61 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=117.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHHH----HHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CC--
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEIT----ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-ED-- 122 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~----~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~-- 122 (320)
..++++|||+|||+++|+++|+ ++|++||+|..+.+.+ ++++||||||+|.+.++|++||+..++. ..
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-----SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-----CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 3457899999999999999977 9999999999766544 4789999999999999999999877653 23
Q ss_pred ceEEEecCCCccC------CCcc------c--------------cccc-c-------------------CC---------
Q psy11409 123 KCYLCVSSPTIKD------KPVQ------I--------------RPWK-L-------------------TD--------- 147 (320)
Q Consensus 123 ~~~vkis~~~~~~------K~vq------v--------------rPw~-~-------------------~d--------- 147 (320)
.+.|..+...... .... . .+.. . ..
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 3333332211100 0000 0 0000 0 00
Q ss_pred ccccc---------------------------------CCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEE
Q psy11409 148 ADFVL---------------------------------DASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGI 194 (320)
Q Consensus 148 ~~y~~---------------------------------~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I 194 (320)
..+.. .......+.++|||+|||..+|+++|+++|++ ||.|.+|.|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~ 239 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEE
Confidence 00000 00012235688999999999999999999999 999999999
Q ss_pred ecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 195 DTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 195 ~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..|+ +|||||+|.+.++|.+||+.
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHH
Confidence 9885 69999999999999999985
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=2.6e-25 Score=194.60 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=115.2
Q ss_pred CCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEE
Q psy11409 52 PSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLC 127 (320)
Q Consensus 52 ~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vk 127 (320)
++++|||+|||+ ++|+++|+++|++||.|..+.+.++ .+|||||.|.++++|++||+..++. +..+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-------CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 467999999999 9999999999999999987655442 2799999999999999999865542 3344444
Q ss_pred ecCCCccCCCccccccccCCcccccC------------CCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCC-CeeEEEE
Q psy11409 128 VSSPTIKDKPVQIRPWKLTDADFVLD------------ASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYG-GVCYAGI 194 (320)
Q Consensus 128 is~~~~~~K~vqvrPw~~~d~~y~~~------------~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG-~V~~v~I 194 (320)
.+.+.....+....+.......|... ......+.++|||+|||..+|+++|+++|++ || .|.++.|
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEE
Confidence 43321100000000000000011000 0112345789999999999999999999999 99 9999999
Q ss_pred ecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 195 DTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 195 ~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+. +|+|||+|.+.++|.+|++.
T Consensus 154 ~~~~-----~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 154 FQKD-----RKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp SSTT-----SSCEEEECSSHHHHHHHHHH
T ss_pred EeCC-----CcEEEEEeCCHHHHHHHHHH
Confidence 7763 79999999999999999974
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=8e-26 Score=209.41 Aligned_cols=140 Identities=7% Similarity=0.052 Sum_probs=108.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++.. .++|||||.|.++++|++||+......
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----~~~g~afV~f~~~~~A~~A~~~~~~~~-------- 105 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK----KNFRFARIEFARYDGALAAITKTHKVV-------- 105 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT----SSSEEEEEEESSHHHHHHHHTTTTCEE--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcEEEEEEECCHHHHHHHHHhCCcEe--------
Confidence 45578999999999999999999999999999777666432 368999999999999999995321111
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCC-CeeEEEEecCCCCCCcceEEE
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYG-GVCYAGIDTDPELKYPKGAGR 208 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG-~V~~v~I~~D~~tg~pkGfgf 208 (320)
.++.+.+.+ ....+|||||||..+|+++|+++|++ || .|..+.|+.|+ .+.++||||
T Consensus 106 ----~g~~i~v~~----------------~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~-~~~~~g~af 163 (292)
T 2ghp_A 106 ----GQNEIIVSH----------------LTECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLR-FNTSRRFAY 163 (292)
T ss_dssp ----TTEECEEEE----------------CCSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC--------CCEEE
T ss_pred ----CCcEEEEEE----------------CCCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCC-CCCcceEEE
Confidence 222333221 13689999999999999999999999 99 99999999997 489999999
Q ss_pred EEecCHHHHHHHHHh
Q psy11409 209 VAFASQASYIAAISA 223 (320)
Q Consensus 209 VtF~~~esa~kAi~~ 223 (320)
|+|.+.++|.+|++.
T Consensus 164 V~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 164 IDVTSKEDARYCVEK 178 (292)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 999999999999984
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=6.1e-25 Score=198.17 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=115.7
Q ss_pred CCCCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceE
Q psy11409 50 SFPSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCY 125 (320)
Q Consensus 50 ~~~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~ 125 (320)
..++++|||+|||+ ++|+++|+++|++||+|..+.+.++ .+|||||.|.++++|++||+..+.. +..+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~-------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-------TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC-------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45678999999999 9999999999999999997666542 2799999999999999999865542 23444
Q ss_pred EEecCCCcc--CCCccccccccCCcccccC------------CCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCC-Cee
Q psy11409 126 LCVSSPTIK--DKPVQIRPWKLTDADFVLD------------ASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYG-GVC 190 (320)
Q Consensus 126 vkis~~~~~--~K~vqvrPw~~~d~~y~~~------------~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG-~V~ 190 (320)
+..+.+... .+.- .+.......|... ......+.++|||+|||..+|+++|+++|++ || .|.
T Consensus 104 v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~ 180 (229)
T 2adc_A 104 ITLSKHQNVQLPREG--QEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVK 180 (229)
T ss_dssp EECCSCCCCCCCCSS--SSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEE
T ss_pred EEEecCccccCcccc--ccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCee
Confidence 443322100 0000 0000000000000 0112345789999999999999999999999 99 999
Q ss_pred EEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 191 YAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 191 ~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.|..+ .+|+|||+|.+.++|.+||+.
T Consensus 181 ~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 181 GFKFFQK-----DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp EEEECSS-----STTCEEEEESSHHHHHHHHHH
T ss_pred EEEEEEC-----CCcEEEEEECCHHHHHHHHHH
Confidence 9999764 279999999999999999984
No 21
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=157.45 Aligned_cols=105 Identities=73% Similarity=1.206 Sum_probs=88.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEecC
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSS 130 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis~ 130 (320)
.++++|||||||+++|+++|+++|++||+|.+.++.+..+..+|++||||||+|+++++|++||+.++...|..++....
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSS 85 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccC
Confidence 45789999999999999999999999999996666554332338999999999999999999999986656666555567
Q ss_pred CCccCCCccccccccCCcccccCCC
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDAS 155 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~ 155 (320)
+.++.++++++||.++|.+|..+..
T Consensus 86 ~~~~~~~~~v~p~~~~d~~~~~~~~ 110 (114)
T 2dnl_A 86 PTIKDKPVQIRPWNLSDSDFVMDSG 110 (114)
T ss_dssp SSSCSEEEEEECCCCCCCCCCCCCC
T ss_pred CCcCCCeeeccCCcccCCceecCCC
Confidence 7888999999999999999877643
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=4.6e-20 Score=156.70 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=95.5
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCC
Q psy11409 94 FPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVP 170 (320)
Q Consensus 94 g~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp 170 (320)
.+++|||||+|.+.++|++||+..+.. .+.+.+. .. ......+.... .........+..+|||||||
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD--DA-----TKTFTVTEGSH---HHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEE--TT-----TTEEEEECCCC---CSSCCCCCCBCCEEEEESCC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCccccc--Cc-----ccccccccccc---ccccccCCCCCCEEEEeCCC
Confidence 369999999999999999999775431 2222221 11 11111110000 00011223446899999999
Q ss_pred ccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEEeccc
Q psy11409 171 RPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEVKPY 242 (320)
Q Consensus 171 ~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ikpy 242 (320)
+.+|+++|+++|++ ||.|..+.|+.|+.++.+||||||+|.+.++|.+||+. .-..+.+ +.|+|...
T Consensus 80 ~~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 147 (158)
T 2kn4_A 80 YRTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMA 147 (158)
T ss_dssp TTCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEE
T ss_pred CCCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEC
Confidence 99999999999999 99999999999999999999999999999999999975 3334443 45555554
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=1.9e-19 Score=146.33 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEecCC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCVSSP 131 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vkis~~ 131 (320)
+.+|||||||+++||++|+++|++||+|..+.+.++. +.+||||||.|+++++|++||+..+.. .++..|+|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC----CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5689999999999999999999999999976665543 458999999999999999999876542 23333333210
Q ss_pred CccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHH
Q psy11409 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALE 177 (320)
Q Consensus 132 ~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~Teed 177 (320)
..+.- +. ...........+|||+|||+++|++.
T Consensus 81 --~~~~~--~~---------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 --KSRKE--RE---------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --SCCCC---------------------------------------
T ss_pred --CCccc--cc---------cccccccCCCCceEeCCCCCCccccc
Confidence 00000 00 00011122346899999999999875
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=131.48 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|||||||+++|+++|+++|++ ||.|.++.|++|+.||.+||||||+|.+.++|.+||+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 578999999999999999999999 99999999999999999999999999999999999975
No 25
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.8e-17 Score=126.01 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+.....+.+ ++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECC----EEE
Confidence 345689999999999999999999999 999999999999999999999999999999999999865444443 455
Q ss_pred Eec
Q psy11409 238 EVK 240 (320)
Q Consensus 238 ~ik 240 (320)
+|+
T Consensus 83 ~v~ 85 (87)
T 3s7r_A 83 DPK 85 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=130.76 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=67.4
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCC-CeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc--cccccCccceEE
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYG-GVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF--VQLQHGEIDKRV 237 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG-~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~--~~i~~~~~~k~v 237 (320)
+++|||+|||+++|+++|+++|++ || .|.+|+|++|+.|+.+||||||+|.+.++|.+||+... +.+. .++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEE
Confidence 368999999999999999999999 99 89999999999999999999999999999999998633 2343 3567
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
+|.-..
T Consensus 76 ~V~~a~ 81 (91)
T 2lxi_A 76 SMHYSD 81 (91)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 776553
No 27
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=133.28 Aligned_cols=87 Identities=29% Similarity=0.441 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCC---CCcceEEEEEecCHHHHHHHHHhcccccccC-----
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPEL---KYPKGAGRVAFASQASYIAAISARFVQLQHG----- 231 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~t---g~pkGfgfVtF~~~esa~kAi~~~~~~i~~~----- 231 (320)
..++|||||||+++|+++|+++|++ ||.|. +.++.|+.+ |++||||||+|.+.++|.+||+.- ..+++.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4689999999999999999999999 99999 999999888 799999999999999999999753 233332
Q ss_pred ---cc-ceEEEecccccccccc
Q psy11409 232 ---EI-DKRVEVKPYVLDDQMC 249 (320)
Q Consensus 232 ---~~-~k~v~ikpy~~~~~~c 249 (320)
.+ .+.|+|+|+.+.++..
T Consensus 84 ~~~~~~~~~~~v~p~~~~d~~~ 105 (114)
T 2dnl_A 84 SSPTIKDKPVQIRPWNLSDSDF 105 (114)
T ss_dssp CCSSSCSEEEEEECCCCCCCCC
T ss_pred cCCCcCCCeeeccCCcccCCce
Confidence 22 5789999998776644
No 28
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=130.61 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccC
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHG 231 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~ 231 (320)
+.+||||||||+++|+++|+++|++ ||.|.+|.|++|+. |.+||||||+|.+.++|.+||+...+.+.+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr 79 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKET 79 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCE
Confidence 3589999999999999999999999 99999999999986 9999999999999999999998655566554
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=131.67 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||+.+|+++|+++|++ ||.|.+|.|++|+.|+++||||||+|.+.++|.+||+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 35689999999999999999999999 99999999999999999999999999999999999975
No 30
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=1.2e-16 Score=134.92 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=84.4
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhC-cc-C-CCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCC
Q psy11409 94 FPPKGYAFLLFQDESSVQQLIDAC-IV-D-EDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVP 170 (320)
Q Consensus 94 g~skGygFV~F~~eesv~kaL~~~-~~-~-~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp 170 (320)
.+.+|+++|+|.+.++|++|++.. +. . +|.+.+..+.++.. ....... ...........+.++|||||||
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~----~~~~~~~---~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT----VTEGSHH---HHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEE----EECSSSS---CCCCSCSSSSTTSCEEEEESCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccc----ccccccc---ccccccccCCCCCCEEEEeCCC
Confidence 467899999999999999999776 33 2 23333333221110 0000000 0000112233456899999999
Q ss_pred ccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 171 RPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 171 ~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+.+|+++|+++|++ ||.|..|.|+.| +||||||+|.+.++|.+||+.
T Consensus 83 ~~~t~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 83 NNGNKTELERAFGY-YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp SCCSCHHHHHHHHH-HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHH
Confidence 99999999999999 999999999998 599999999999999999974
No 31
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=3.6e-17 Score=126.83 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=63.8
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCC--CeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-ccccccCccceEEE
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYG--GVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-FVQLQHGEIDKRVE 238 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG--~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-~~~i~~~~~~k~v~ 238 (320)
.+|||||||+++|+++|+++|++ || .|.++.|+.|+.+|++||||||+|.+.++|.+||+.- -..+. .++|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEE
Confidence 58999999999999999999999 99 9999999999999999999999999999999999742 22333 34666
Q ss_pred ecccc
Q psy11409 239 VKPYV 243 (320)
Q Consensus 239 ikpy~ 243 (320)
|++..
T Consensus 77 V~~~~ 81 (90)
T 3p5t_L 77 VTPSN 81 (90)
T ss_dssp ECCC-
T ss_pred EEECC
Confidence 76664
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=124.01 Aligned_cols=80 Identities=29% Similarity=0.444 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.+||||||+|.+.++|.+||+..-..+.+ +.|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g----~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG----KKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECC----eEEE
Confidence 45689999999999999999999999 999999999999999999999999999999999999854444543 4555
Q ss_pred ecccc
Q psy11409 239 VKPYV 243 (320)
Q Consensus 239 ikpy~ 243 (320)
|+...
T Consensus 83 V~~a~ 87 (99)
T 2dgs_A 83 VKRAE 87 (99)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 65554
No 33
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=124.61 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCee-EEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccce
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVC-YAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDK 235 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~-~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k 235 (320)
..+.++|||||||+.+|+++|+++|++ ||.|. .+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+.+....+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999 99999 999999999999999999999999999999984 334455554444
Q ss_pred EEEeccc
Q psy11409 236 RVEVKPY 242 (320)
Q Consensus 236 ~v~ikpy 242 (320)
+|+|...
T Consensus 85 ~l~v~~a 91 (99)
T 2div_A 85 RFKLNYA 91 (99)
T ss_dssp ECCEEET
T ss_pred eEEEeec
Confidence 4544433
No 34
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=4.4e-17 Score=121.34 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=63.7
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCc
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGE 232 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~ 232 (320)
||||||||+++|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+|++.....+.+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 6999999999999999999999 99999999999999999999999999999999999987655665543
No 35
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.7e-16 Score=127.79 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
++.++|||||||+.+|+++|+++|++ ||.|..+.|+.|+.+|.+||||||+|.+.++|.+||+.....+.+ +.|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCC----EEEE
Confidence 45689999999999999999999999 999999999999999999999999999999999999875444443 5666
Q ss_pred ecccc
Q psy11409 239 VKPYV 243 (320)
Q Consensus 239 ikpy~ 243 (320)
|+...
T Consensus 98 V~~a~ 102 (109)
T 2rs2_A 98 PKVAF 102 (109)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 66554
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=121.41 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+|++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999984
No 37
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=122.80 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
.+.++|||+|||+.+|+++|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+. .+.+. .++|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~----g~~l~ 86 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMID----GRWCD 86 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEET----TEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeC----CeEEE
Confidence 45689999999999999999999999 99999999999999999999999999999999999985 33444 35677
Q ss_pred ecccccc
Q psy11409 239 VKPYVLD 245 (320)
Q Consensus 239 ikpy~~~ 245 (320)
|+....+
T Consensus 87 v~~a~~~ 93 (103)
T 2cqg_A 87 CKLPNSK 93 (103)
T ss_dssp EECCCTT
T ss_pred EEecCCC
Confidence 7766433
No 38
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=124.34 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-------cccccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-------FVQLQH 230 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-------~~~i~~ 230 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..|.|+.|+.++.++|||||+|.+.++|.+||+.- -+.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 346789999999999999999999999 999999999999999999999999999999999999863 23443
Q ss_pred CccceEEEeccccc
Q psy11409 231 GEIDKRVEVKPYVL 244 (320)
Q Consensus 231 ~~~~k~v~ikpy~~ 244 (320)
.+.|.|+...+
T Consensus 90 ---g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 ---GRQLKVDLAVT 100 (111)
T ss_dssp ---SCEEEEECCCC
T ss_pred ---CEEEEEEECCC
Confidence 35677776643
No 39
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=125.62 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
.++.++|||+|||+.+|+++|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+..-+.+.+ ++|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g----~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG----RNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECC----EEE
Confidence 345689999999999999999999999 999999999999999999999999999999999999874444543 577
Q ss_pred Eecccccc
Q psy11409 238 EVKPYVLD 245 (320)
Q Consensus 238 ~ikpy~~~ 245 (320)
.|+...++
T Consensus 88 ~V~~a~~~ 95 (105)
T 2dh8_A 88 DPKPCTPR 95 (105)
T ss_dssp BCCCSCCS
T ss_pred EEEEccCC
Confidence 77777544
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-17 Score=128.89 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=58.4
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCC--eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGG--VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~--V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.||||+|||+.+|+++|+++|++ ||. |.+|+|++|+.||++||||||+|.+.++|.+||+.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 69999999999999999999999 995 67999999999999999999999999999999975
No 41
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.6e-16 Score=118.45 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=61.3
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccccccc
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQH 230 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~ 230 (320)
+|||||||+++|+++|+++|++ ||.|..+.|+.|++++.++|||||+|.+.++|.+|++..-..+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 67 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC
Confidence 6999999999999999999999 999999999999999999999999999999999999754444443
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=3.5e-16 Score=122.29 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEE
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVE 238 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ 238 (320)
|+++|||||||..+|+++|+++|++ ||.|..+.|+.|+.+|.++|||||+|.+.++|.+||+. .-..+.+ +.|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLK 75 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEE
Confidence 4689999999999999999999999 99999999999999999999999999999999999974 2233332 5566
Q ss_pred ecccc
Q psy11409 239 VKPYV 243 (320)
Q Consensus 239 ikpy~ 243 (320)
|....
T Consensus 76 V~~a~ 80 (96)
T 2x1f_A 76 CGYSS 80 (96)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66553
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=3.7e-16 Score=118.29 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=65.8
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEEec
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ik 240 (320)
.+|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+|++. .-..+. .++|.|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEE
Confidence 58999999999999999999999 99999999999999999999999999999999999984 223333 3455665
Q ss_pred cc
Q psy11409 241 PY 242 (320)
Q Consensus 241 py 242 (320)
..
T Consensus 77 ~a 78 (83)
T 3md1_A 77 WA 78 (83)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=125.00 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
....+.+|||||||+++||++|+++|++||+|..+.+.++. .+|++||||||.|.++++|++||+..++
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK--VAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS--SSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC--CCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 45567899999999999999999999999999976666653 4789999999999999999999987654
No 45
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=119.47 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=63.5
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccC
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHG 231 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~ 231 (320)
.||||||||+++|+++|+++|++ ||.|..+.|+.|+.++.++|+|||+|.+.++|.+|++.....+.+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 69 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 69 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCE
Confidence 47999999999999999999999 9999999999999999999999999999999999998755555543
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=121.05 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||+.+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+. .++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEE
Confidence 45689999999999999999999999 99999999999999999999999999999999999964 223333 3567
Q ss_pred Eecccccc
Q psy11409 238 EVKPYVLD 245 (320)
Q Consensus 238 ~ikpy~~~ 245 (320)
.|....++
T Consensus 81 ~V~~a~~~ 88 (99)
T 1whw_A 81 HVLPSTIK 88 (99)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 77776433
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.5e-16 Score=121.97 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
.++.++|||||||+.+|+++|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+. .-..+.+ ++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----KP 86 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----CB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 346689999999999999999999999 99999999999999999999999999999999999985 2233433 45
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|+...
T Consensus 87 l~v~~a~ 93 (105)
T 1x5u_A 87 IRVNKAS 93 (105)
T ss_dssp CEEEETT
T ss_pred EEEEECC
Confidence 6666654
No 48
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=3e-16 Score=124.46 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc-cc-cccCccce
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF-VQ-LQHGEIDK 235 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~-~~-i~~~~~~k 235 (320)
..+.++|||||||..+|+++|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+.-. .. +.. ..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~--~g~ 86 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG--MNR 86 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT--CSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC--CCc
Confidence 345689999999999999999999999 9999999999999999999999999999999999997422 11 211 234
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
.|+|+...
T Consensus 87 ~l~v~~a~ 94 (106)
T 2dgp_A 87 PIQVKPAD 94 (106)
T ss_dssp CCEEEECC
T ss_pred eEEEEECC
Confidence 56666663
No 49
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=124.05 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=68.2
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC---CCceEEEecC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD---EDKCYLCVSS 130 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~---~~~~~vkis~ 130 (320)
.+|||||||+++|+++|+++|++||+|..+...++ ++|||||.|+++++|++||+..+.. +..+.|..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 37999999999999999999999999986655442 7899999999999999999865432 3344444433
Q ss_pred CCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCC
Q psy11409 131 PTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVP 170 (320)
Q Consensus 131 ~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp 170 (320)
+..+... + ..+....+...+||||||+
T Consensus 74 ~~~~~~~------------~-~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSR------------F-DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSC------------C-CSCCCSCCCCSCCCSCCCC
T ss_pred CCCCccc------------C-CCCCccccCCCceecCCCC
Confidence 2111100 0 0111222346789999997
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=1.2e-16 Score=126.57 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=59.9
Q ss_pred CCeEEEcCCCc------cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPR------PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~------~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+++|||||||. ++|+++|+++|++ ||.|.+|.|++|+.|+++||||||+|.+.++|.+||+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 57999999999 9999999999999 99999999999999999999999999999999999974
No 51
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=119.92 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||+.+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999974
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.2e-16 Score=119.16 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+.+ ++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPM 77 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEE
Confidence 35689999999999999999999999 99999999999999999999999999999999999984 2233433 455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 78 ~V~~a 82 (95)
T 2dnz_A 78 RVGHV 82 (95)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 55555
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=122.38 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCC-CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc--CCCceEEEe
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFG-PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV--DEDKCYLCV 128 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG-~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~--~~~~~~vki 128 (320)
+++|||+|||+++||++|+++|++|| +|..+.++++. .++++||||||.|.++++|++||+...+ ..++..|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~--~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK--SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS--SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC--CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 46899999999999999999999999 78876666653 4789999999999999999999987533 233444444
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=123.61 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
..+.++|||+|||+.+|+++|+++|++ ||.|..+.|+.|+.++.+||||||+|.+.++|.+||+.-...+. .++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~----g~~l 88 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIID----GRKA 88 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCC----CEEE
Confidence 345689999999999999999999999 99999999999999999999999999999999999986443343 3455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|+..
T Consensus 89 ~V~~a 93 (116)
T 2cqd_A 89 NVNLA 93 (116)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 55555
No 55
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=3.4e-16 Score=130.98 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=62.6
Q ss_pred ceEEEEeCCHHHHHHHHHhCccCCCceEEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHH
Q psy11409 98 GYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALE 177 (320)
Q Consensus 98 GygFV~F~~eesv~kaL~~~~~~~~~~~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~Teed 177 (320)
-|.|+.|+++..+..||+........- ...+ .+.. +.....+.++|||||||+.+|+++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g-----~~~~---------------~~~~-~~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG-----RGSM---------------SYGR-PPPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp -----------------------------------C---------------CSCC-SCSSGGGCCCEEEECCCSSCHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCC-----CCCC---------------CcCC-CCCCCCCCCEEEEeCCCCCCCHHH
Confidence 467888888888988888765321100 0000 0000 112233568999999999999999
Q ss_pred HHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 178 LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 178 L~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+.
T Consensus 64 L~~~F~~-~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 64 LRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp HHHHHGG-GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred HHHHHHh-cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999974
No 56
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=124.50 Aligned_cols=81 Identities=27% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEe
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEV 239 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~i 239 (320)
+.++|||+|||+.+|+++|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+..-..+. .++|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~----g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSID----GRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEEC----CEEEEE
Confidence 3489999999999999999999999 99999999999999999999999999999999999987444444 357788
Q ss_pred cccccc
Q psy11409 240 KPYVLD 245 (320)
Q Consensus 240 kpy~~~ 245 (320)
+...++
T Consensus 101 ~~a~~~ 106 (116)
T 1x4b_A 101 KRAVAR 106 (116)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 877544
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.4e-16 Score=122.17 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
++.++|||||||+.+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+. .++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEE
Confidence 45789999999999999999999999 99999999999999999999999999999999999974 223343 3566
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
.|....
T Consensus 85 ~V~~a~ 90 (102)
T 2cqb_A 85 RVNLAK 90 (102)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 666553
No 58
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=120.48 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEE-EEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYA-GIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v-~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
+.++|||+|||..+|+++|+++|++ ||.|..+ .|+.|+.++.++|||||+|.+.++|.+||+. .-..+. .+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEE
Confidence 5689999999999999999999999 9999999 9999999999999999999999999999984 222333 3566
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
.|....
T Consensus 79 ~v~~a~ 84 (96)
T 1x5t_A 79 TVSYAF 84 (96)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 666664
No 59
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=6.7e-16 Score=117.37 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|+|||+|.+.++|.+|++.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999964
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9e-16 Score=119.03 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
.++.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+. .++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 86 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 345689999999999999999999999 99999999999999999999999999999999999985 223333 245
Q ss_pred EEecc
Q psy11409 237 VEVKP 241 (320)
Q Consensus 237 v~ikp 241 (320)
|.|..
T Consensus 87 l~v~~ 91 (95)
T 2cqc_A 87 IRVSG 91 (95)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55544
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=120.40 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-ccccccc
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQH 230 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~ 230 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 35689999999999999999999999 99999999999999999999999999999999999984 3334443
No 62
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=121.95 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeE-EEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY-AGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~-v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
....+|||||||+++|+++|+++|++ ||.|.. |.|+.| .++++||||||+|.+.++|.+||+..-..+.+ +.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~g----r~i 86 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGH----RYI 86 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSS----SCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCC----cEE
Confidence 45689999999999999999999999 999998 999999 79999999999999999999999874444443 345
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
+|.+.
T Consensus 87 ~v~~~ 91 (104)
T 1wg5_A 87 EIFKS 91 (104)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55554
No 63
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1e-15 Score=123.47 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||.++|+++|+++|++ ||.|..+.|+.|+.++.+||||||+|.+.++|.+||+. .-..+. .++|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 97 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MKRL 97 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CEEE
Confidence 45689999999999999999999999 99999999999999999999999999999999999965 223333 3456
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
.|....
T Consensus 98 ~V~~a~ 103 (115)
T 2cpz_A 98 KVQLKR 103 (115)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 666553
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.7e-16 Score=122.01 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
.++.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.|+.++|||||+|.+.++|.+||+. .-..+.+ +.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG----RE 84 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----BC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 355789999999999999999999999 99999999999999999999999999999999999984 3333443 34
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|+..
T Consensus 85 l~V~~a 90 (103)
T 2dnm_A 85 LRVQVA 90 (103)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 444444
No 65
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=6.2e-16 Score=125.47 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=64.4
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEEe
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEV 239 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~i 239 (320)
..+|||||||+++|+++|+++|++ ||.|.+|+|+.|+ +.+||||||+|.+.++|.+||+. .-..|.+ ++|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 468999999999999999999999 9999999999995 45899999999999999999975 3334433 46666
Q ss_pred cccc
Q psy11409 240 KPYV 243 (320)
Q Consensus 240 kpy~ 243 (320)
..+.
T Consensus 78 ~~a~ 81 (115)
T 4f25_A 78 GRFK 81 (115)
T ss_dssp EESS
T ss_pred EECC
Confidence 6664
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=118.84 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY--------AGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~--------v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+..+|||||||.++|+++|+++|++ ||.|.. +.|+.|++++++||||||+|.+.++|.+||+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 345689999999999999999999999 999999 99999999999999999999999999999974
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=119.89 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecC-CCCCCcceEEEEEecCHHHHHHHHHhc--ccccccCccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTD-PELKYPKGAGRVAFASQASYIAAISAR--FVQLQHGEID 234 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D-~~tg~pkGfgfVtF~~~esa~kAi~~~--~~~i~~~~~~ 234 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..|.|+.| +.++.++|||||+|.+.++|.+||+.- -..+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---- 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---- 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC----
Confidence 345689999999999999999999999 999999999999 899999999999999999999999863 444543
Q ss_pred eEEEeccc
Q psy11409 235 KRVEVKPY 242 (320)
Q Consensus 235 k~v~ikpy 242 (320)
+.|.|...
T Consensus 87 ~~l~v~~a 94 (107)
T 2cph_A 87 RRLVLEWA 94 (107)
T ss_dssp CBCEEEEC
T ss_pred CEEEEEeC
Confidence 34445444
No 68
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=1.5e-15 Score=122.29 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||||||..+|+++|+++|++ ||.|..|.|+.|+.++.++|||||+|.+.++|.+||+. .-..+.+ +.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 87 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQI 87 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 45689999999999999999999999 99999999999999999999999999999999999974 2233433 455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 88 ~V~~a 92 (115)
T 2dgo_A 88 RTNWA 92 (115)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 55555
No 69
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.9e-15 Score=119.62 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=60.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+ ++.+||||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHH
Confidence 45789999999999999999999999 9999999999997 899999999999999999999974
No 70
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=124.30 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=60.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
-|.++|||+|||+++||++|+++|++||+|..+.+.++. .++++||||||+|++.++|++||+..++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~--~tg~~rG~aFV~f~~~~~A~~Ai~~lng 70 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP--RTRKHLGLARVLFTSTRGAKETVKNLHL 70 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC--CCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 357799999999999999999999999999977766654 4789999999999999999999987765
No 71
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.6e-16 Score=126.53 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCe-eEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGV-CYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V-~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
.+.++|||||||+++|+++|+++|++ ||.| ..|.|++|+ ++++||||||+|.+.++|.+||+..-..|.+ +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g----r~i 86 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNG----REA 86 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETT----EEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCC----eEE
Confidence 45689999999999999999999999 9999 899999998 9999999999999999999999864444443 567
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
+|.+..
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 776664
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=118.09 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+ ++.++|||||+|.+.++|.+||+. .-..+. .++|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 88 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENII 88 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 45689999999999999999999999 9999999999998 999999999999999999999975 223343 2456
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 89 ~v~~a 93 (100)
T 2do4_A 89 KVAIS 93 (100)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66555
No 73
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.7e-16 Score=121.36 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
.++.++|||||||..+|+++|+++|++ ||.|..|.|+.|+.++.++|||||+|.+.++|.+||+. .-..+. .++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 345689999999999999999999999 99999999999999999999999999999999999984 222333 356
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|....
T Consensus 87 l~v~~a~ 93 (103)
T 2cq0_A 87 LNVEWAK 93 (103)
T ss_dssp CEEEESS
T ss_pred EEEEECC
Confidence 6666553
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.5e-16 Score=119.90 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCC---CCCcceEEEEEecCHHHHHHHHHh-cccccccCccc
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPE---LKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEID 234 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~---tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~ 234 (320)
.+.++|||||||+.+|+++|+++|++ ||.|..+.|..|+. |+.++|||||+|.+.++|.+||+. .-..+. .
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 77 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----G 77 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----C
Confidence 35689999999999999999999999 99999999999987 779999999999999999999985 223343 3
Q ss_pred eEEEecccc
Q psy11409 235 KRVEVKPYV 243 (320)
Q Consensus 235 k~v~ikpy~ 243 (320)
++|.|+...
T Consensus 78 ~~l~V~~a~ 86 (98)
T 2cpf_A 78 HKLEVRISE 86 (98)
T ss_dssp EECEEECSS
T ss_pred eEEEEEEcc
Confidence 566777664
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=120.94 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
..+.++|||||||+.+|+++|+++|++ || |..|.|+.|+.|+.++|||||+|.+.++|.+||+..-..|. .++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~----g~~l 85 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLG----DRSL 85 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEET----TEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeEC----CeEE
Confidence 345689999999999999999999999 97 99999999999999999999999999999999943333343 3455
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
.|....
T Consensus 86 ~V~~a~ 91 (103)
T 2dng_A 86 RVDIAE 91 (103)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 666553
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=118.94 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999964
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.1e-15 Score=117.18 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=66.5
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+|+...-..+. .++|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC----CcEEEEE
Confidence 479999999999999999999999 99999999999999999999999999999999999943333333 3466666
Q ss_pred cc
Q psy11409 241 PY 242 (320)
Q Consensus 241 py 242 (320)
+.
T Consensus 81 ~a 82 (89)
T 3ucg_A 81 PK 82 (89)
T ss_dssp ET
T ss_pred Ec
Confidence 55
No 78
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=118.58 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999999999999999999999999999974
No 79
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.1e-15 Score=116.91 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEE
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLC 127 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vk 127 (320)
.+.++|||+|||+++|+++|+++|++||+|..+....+. .+++++|||||+|.++++|++||+...+..++..++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP--NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC--CCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 457799999999999999999999999999976665543 468999999999999999999997654443444333
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=120.88 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHhcccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPEL-KYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~t-g~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||+.+|+++|+++|++ || |..|.|+.|+.+ +.++|||||+|.+.++|.+||+..-..+. .++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~----g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG----NKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEET----TEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeC----CcEE
Confidence 45689999999999999999999999 99 999999999988 99999999999999999999943333343 3566
Q ss_pred Eeccccc
Q psy11409 238 EVKPYVL 244 (320)
Q Consensus 238 ~ikpy~~ 244 (320)
.|+...+
T Consensus 87 ~V~~a~~ 93 (104)
T 1wi8_A 87 RVDVADQ 93 (104)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 6666643
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=130.91 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCC--CeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYG--GVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG--~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..++|||||||+.+|+++|+++|++ || .|..|.|++|+.||++||||||+|.+.++|.+||+. .-..|. .+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEK 128 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 4589999999999999999999999 99 999999999999999999999999999999999986 223343 356
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|+..
T Consensus 129 l~V~~a 134 (156)
T 3n9u_C 129 VDVRPA 134 (156)
T ss_dssp CEEEEC
T ss_pred eEEEEc
Confidence 666655
No 82
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=123.48 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
.+.++|||+|||+++|+++|+++|++ ||. +.|.|++|+ ++++||||||+|.+.++|.+||+..-..|.+ +.|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g----r~i~ 85 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP-LNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQH----RYVE 85 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS-CCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSS----SCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECC----cEEE
Confidence 34589999999999999999999999 995 599999997 9999999999999999999999654444443 3455
Q ss_pred eccc
Q psy11409 239 VKPY 242 (320)
Q Consensus 239 ikpy 242 (320)
|.+.
T Consensus 86 V~~~ 89 (102)
T 1wez_A 86 LFLN 89 (102)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5554
No 83
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=124.76 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
.++.++|||||||..+|+++|+++|++ ||.|..|.|++|+.++.+||||||+|.+.++|.+||+. .-..+. .++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 113 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NKR 113 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 345689999999999999999999999 99999999999999999999999999999999999985 223333 346
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|....
T Consensus 114 l~v~~a~ 120 (139)
T 1u6f_A 114 LKVALAA 120 (139)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 6666553
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.2e-15 Score=122.77 Aligned_cols=105 Identities=12% Similarity=0.175 Sum_probs=77.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
+.++++|||+|||+++|+++|+++|++||.|..+.+.++ +.++|||||.|.+.++|++|++..++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~--------- 70 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-----PETRGTAYVVYEDIFDAKNAVDHLSGF--------- 70 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-----TTTTTCEEEEESSHHHHHHHHHHHTTC---------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCCcEEEEEECCHHHHHHHHHHcCCC---------
Confidence 345679999999999999999999999999997655542 467999999999999999999865542
Q ss_pred CCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccchHHHHHHHHhhhCCC
Q psy11409 130 SPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGG 188 (320)
Q Consensus 130 ~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~ 188 (320)
.+.++.+.|.... .. ... ++++...++++|.++|++ ||-
T Consensus 71 --~~~g~~l~v~~a~-~~------------~~~----~~~~~~~~~~~l~~~~~~-~g~ 109 (115)
T 3lqv_A 71 --NVSNRYLVVLYYN-AN------------RAF----QKMDTKKKEEQLKLLKEK-YGI 109 (115)
T ss_dssp --BSSSCBCEEEECC-HH------------HHT----TTSCHHHHHHHHHHHHHH-HCC
T ss_pred --EECCeEEEEEEec-CC------------hhh----hhhhHhHhHHHHHHHHHH-hCC
Confidence 1112222221100 00 000 678899999999999999 885
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.9e-16 Score=123.63 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
.+.++|||||||+++|+++|+++|++||+|..+.+.++. . +++||||||+|+++++|++||+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~--~-g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL--H-KAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC--T-TSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC--C-CCCccEEEEEECCHHHHHHHHHc
Confidence 346799999999999999999999999999977666653 2 89999999999999999999984
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.8e-15 Score=125.74 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
.++.++|||+|||+.+|+++|+++|++ ||.|..|.|+.|+.++.+||||||+|.+.++|.+||+. .-..|.+ ++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 456789999999999999999999999 99999999999999999999999999999999999984 2233432 45
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|+..
T Consensus 118 l~V~~a 123 (129)
T 2kxn_B 118 IRVDFS 123 (129)
T ss_dssp CEESCC
T ss_pred EEEEEe
Confidence 566555
No 87
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=5.6e-16 Score=153.49 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=61.8
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++.++|||||||+.+|+++|.++|++ ||.|+.|.|+.|+.|+.++|||||+|.+.++|.+||+.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 356689999999999999999999999 99999999999999999999999999999999999975
No 88
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.5e-15 Score=119.30 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=61.4
Q ss_pred CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..++.++|||+|||+.+|+++|+++|++ ||.|..+.|+.|+ ++.++|||||+|.+.++|.+||+.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHH
Confidence 4456789999999999999999999999 9999999999998 999999999999999999999984
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2.4e-15 Score=120.19 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+. .+.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 98 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTI 98 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 45689999999999999999999999 99999999999999999999999999999999999984 223343 2455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 99 ~V~~a 103 (110)
T 1oo0_B 99 QVDWC 103 (110)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 55544
No 90
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=121.68 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=55.6
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeE--EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~--v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
.+|||+|||+++||++|+++|++||.|. .+...++. .+|++||||||.|.++++|++||+..++.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~--~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK--QTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS--SSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC--CCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 4999999999999999999999999754 34444443 57999999999999999999999987653
No 91
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.60 E-value=1.5e-15 Score=135.12 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=60.5
Q ss_pred CCCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 156 MPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 156 ~~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+..|.+||||||||+++|+++|+++|++ ||.|.+|.|++|+.|++++|||||+|.+.++|.+||+.
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 34456789999999999999999999999 99999999999999999999999999999999999975
No 92
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=120.63 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCee--------EEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccc
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVC--------YAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQ 229 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~--------~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~ 229 (320)
.+.++|||+|||..+|+++|+++|++ ||.|. .+.|++|+.++.+||||||+|.+.++|.+||+. .-..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45689999999999999999999999 99999 699999999999999999999999999999984 333343
Q ss_pred cCccceEEEecccc
Q psy11409 230 HGEIDKRVEVKPYV 243 (320)
Q Consensus 230 ~~~~~k~v~ikpy~ 243 (320)
.++|.|....
T Consensus 92 ----g~~l~V~~a~ 101 (113)
T 2cpe_A 92 ----GSKLKVSLAR 101 (113)
T ss_dssp ----TEECEEECSS
T ss_pred ----CCEEEEEECC
Confidence 3456666553
No 93
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=120.58 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+. .-..+.+ ++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~ 97 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RP 97 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 345689999999999999999999999 99999999999999999999999999999999999974 2233433 44
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|+|...
T Consensus 98 l~V~~a 103 (108)
T 2jrs_A 98 MKVGHV 103 (108)
T ss_dssp CEEECS
T ss_pred EEEEEc
Confidence 555544
No 94
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=4e-15 Score=123.06 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.+||||||+|.+.++|.+||+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 345689999999999999999999999 99999999999999999999999999999999999974
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=117.89 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=60.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+..+|||||||+.+|+++|+++|++.||.|..|.|+.|+ ++.+||||||+|.+.++|.+||+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHH
Confidence 4568999999999999999999999559999999999998 999999999999999999999984
No 96
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=2.7e-15 Score=120.67 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=61.7
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEE
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLC 127 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vk 127 (320)
+...+.++|||||||+++|+++|+++|++||+|..+.+.++. .+|+++|||||+|.++++|++||+......++..++
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP--LTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT--TTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC--CCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 345567899999999999999999999999999976665543 468999999999999999999998765444444444
Q ss_pred e
Q psy11409 128 V 128 (320)
Q Consensus 128 i 128 (320)
+
T Consensus 98 V 98 (109)
T 2rs2_A 98 P 98 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=126.76 Aligned_cols=64 Identities=6% Similarity=0.086 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeE--EEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY--AGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~--v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+.+|+++|+++|++ ||.|.. |+|++|+.||++||||||+|.+. +|.+||+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~ 85 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI 85 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 346689999999999999999999999 999977 99999999999999999999999 99999875
No 98
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=119.41 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEe-cCCCCCCcceEEEEEecCHHHHHHHHHhc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGG-VCYAGID-TDPELKYPKGAGRVAFASQASYIAAISAR 224 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~-~D~~tg~pkGfgfVtF~~~esa~kAi~~~ 224 (320)
+.++|||||||+.+|+++|+++|++ ||. |..+.|+ .|+.++.+||||||+|.+.++|.+||+.-
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 4689999999999999999999999 998 9999999 89999999999999999999999999853
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=1.5e-15 Score=113.14 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=53.7
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
+|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||+|.++++|++|++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~a~~~ 60 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK--TTNRHRGFGFVTFESEDIVEKVCEI 60 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS--SSTTSCBEEEEECSCHHHHHHHHSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC--CCCCcCcEEEEEECCHHHHHHHHHC
Confidence 69999999999999999999999999876665543 3689999999999999999999973
No 100
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=7.2e-16 Score=121.61 Aligned_cols=69 Identities=28% Similarity=0.381 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccC
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHG 231 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~ 231 (320)
+.++|||||||+.+|+++|+++|++ ||.|..+.|+.|+ ++.+||||||+|.+.++|.+||+ .-+.+.+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCE
Confidence 3589999999999999999999999 9999999999998 99999999999999999999998 44455544
No 101
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=120.68 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=60.7
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCC-CCCCcceEEEEEecCHHHHHHHHHhccccccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDP-ELKYPKGAGRVAFASQASYIAAISARFVQLQH 230 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~-~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~ 230 (320)
..+.++|||||||+++|+++|+++|++ || |.++.|+.|+ .+|+++|||||+|.+.++|.+||+..-..+.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 345689999999999999999999999 99 9999999998 69999999999999999999999533344443
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=122.16 Aligned_cols=77 Identities=22% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
.++|||||||+.+|+++|+++|++ ||.|..|.|+.|+.++.++|||||+|.+.++|.+||...-..+.+ +.|.|+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g----~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG----VPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETT----EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCC----eEEEEE
Confidence 489999999999999999999999 999999999999999999999999999999999999444444443 466666
Q ss_pred cc
Q psy11409 241 PY 242 (320)
Q Consensus 241 py 242 (320)
..
T Consensus 100 ~a 101 (114)
T 2cq4_A 100 AS 101 (114)
T ss_dssp EH
T ss_pred ec
Confidence 54
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=114.30 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=55.7
Q ss_pred CeEEEcCCCccc------hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPL------KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~------TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++|||||||..+ |+++|+++|++ ||.|..+.|+ +++|.+||||||+|.+.++|.+||+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 689999999999 88999999999 9999999988 46999999999999999999999984
No 104
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.5e-15 Score=128.02 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCC---eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccce
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGG---VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDK 235 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~---V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k 235 (320)
....+|||||||+++|+++|+++|++ ||. |..|.|++|++ |++||||||+|.+.++|.+||+..-..|.+ +
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~g----r 115 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGH----R 115 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSS----S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECC----E
Confidence 34689999999999999999999999 999 89999999986 999999999999999999999843344443 4
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
.|+|.+..
T Consensus 116 ~i~V~~a~ 123 (136)
T 2hgl_A 116 YIEVFKSH 123 (136)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 67777664
No 105
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=114.01 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
....+|||+|||+.+|+++|+++|++ | .|..+.|+.| .+|+++|||||+|.+.++|.+||+..-..+. .+.|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~----gr~i~ 80 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMG----GRYIE 80 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEET----TEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeC----CcEEE
Confidence 34689999999999999999999999 9 9999999999 7999999999999999999999983333443 35677
Q ss_pred eccc
Q psy11409 239 VKPY 242 (320)
Q Consensus 239 ikpy 242 (320)
|...
T Consensus 81 v~~a 84 (91)
T 2dgw_A 81 VFRE 84 (91)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7665
No 106
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=121.91 Aligned_cols=76 Identities=21% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
..+|||||||+++|+++|+++|++ | .|..|.|++|++ |++||||||+|.++++|.+||+..-..|.+ +.|+|.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~g----r~i~V~ 88 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQ----RYVEVS 88 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETT----EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECC----eEEEEE
Confidence 479999999999999999999999 9 899999999974 999999999999999999999654444443 577777
Q ss_pred ccc
Q psy11409 241 PYV 243 (320)
Q Consensus 241 py~ 243 (320)
+..
T Consensus 89 ~a~ 91 (109)
T 2dnn_A 89 PAT 91 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 107
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.4e-15 Score=125.31 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCee--EEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVC--YAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKR 236 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~--~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~ 236 (320)
....+|||||||+++|+++|+++|++ | .|+ .|.|++|++ |++||||||+|.+.++|.+||+.....|.+ +.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~g----R~ 112 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGH----RY 112 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTT----BC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECC----EE
Confidence 44689999999999999999999999 9 677 999999986 999999999999999999999864444443 34
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|+|.+.
T Consensus 113 I~V~~a 118 (126)
T 2hgm_A 113 IEVFKS 118 (126)
T ss_dssp CCCEEE
T ss_pred EEEEEC
Confidence 555554
No 108
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=116.45 Aligned_cols=63 Identities=29% Similarity=0.325 Sum_probs=59.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.++|||+|||+.+|+++|+++|++ ||.|..+.|+.|+. +.+||||||+|.+.++|.+||+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 99999999999974 99999999999999999999984
No 109
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.9e-15 Score=121.12 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+++|+++|+++|++ ||.|..+.|+.|++++.+||||||+|.+.++|.+||+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 345689999999999999999999999 99999999999999999999999999999999999985
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=9.5e-15 Score=119.39 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccce
Q psy11409 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDK 235 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k 235 (320)
..++.++|||||||..+|+++|+++|++ ||.|..+.|..|+ ++.++|||||+|.+.++|.+||+. .-..+.+ +
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~ 104 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG----R 104 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----C
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----c
Confidence 3456689999999999999999999999 9999999999998 999999999999999999999984 3334443 4
Q ss_pred EEEeccc
Q psy11409 236 RVEVKPY 242 (320)
Q Consensus 236 ~v~ikpy 242 (320)
.|.|...
T Consensus 105 ~l~V~~a 111 (124)
T 2kt5_A 105 PMDIQLV 111 (124)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 5555544
No 111
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=116.40 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=57.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+..
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~~ 72 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA--EKQRPRGFGFITFEDEQSVDQAVNMH 72 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT--TTCSCCSEEEEEESSHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCCCCCceEEEEECCHHHHHHHHHhC
Confidence 456899999999999999999999999999976666543 46899999999999999999999843
No 112
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-15 Score=119.43 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..++..++..|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR--QTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS--SSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC--CCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 3457899999999999999999999999999976666543 4689999999999999999999998776444444433
No 113
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=1e-14 Score=112.56 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||+|||+.+|+++|+++|++ ||.|..+.|+.| ++.++|||||+|.+.++|.+||+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 999999999985 899999999999999999999985
No 114
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=114.22 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCC-cceEEEEEecCHHHHHHHHHh-cccccccCccceEEE
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKY-PKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVE 238 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~-pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ 238 (320)
.++|||||||.++|+++|+++|++ ||.|..+.|+.|+.++. ++|+|||+|.+.++|.+|++. .-..+. .+.|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEE
Confidence 479999999999999999999999 99999999999988877 999999999999999999984 333343 24555
Q ss_pred eccc
Q psy11409 239 VKPY 242 (320)
Q Consensus 239 ikpy 242 (320)
|..+
T Consensus 79 v~~a 82 (88)
T 4a8x_A 79 ATAV 82 (88)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5554
No 115
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=6e-15 Score=115.18 Aligned_cols=66 Identities=21% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
|+++|||||||+++|+++|+++|++||.|..+.+.++. .+++++|||||.|.+.++|++|++..++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~Ai~~l~g 66 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP--QTGRSKGYAFIEFRDLESSASAVRNLNG 66 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT--TTCCBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 57899999999999999999999999999976665543 4689999999999999999999987654
No 116
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=112.85 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
-++++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS--DTGRSKGYGFITFSDSECARRALEQLNG 69 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS--SSCCCCSEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC--CCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 357899999999999999999999999999976666553 4689999999999999999999986554
No 117
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=6.1e-15 Score=120.55 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-ccccccc
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQH 230 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~ 230 (320)
.+.++|||+|||..+|+++|.++|++ ||.|..|.|+.|+.++.++|||||+|.+.++|.+||+. .-..|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 34689999999999999999999999 99999999999999999999999999999999999974 3334443
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=117.41 Aligned_cols=63 Identities=27% Similarity=0.392 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+.++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+||+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3589999999999999999999999 99999999999999999999999999999999999974
No 119
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=4.3e-15 Score=115.53 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
.+..+|||||||+++|+++|+++|++ ||.|.+|.|++| +||||||+|.+.++|.++.. ..+.+. .++|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~----g~~v~ 77 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIK----GISVH 77 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccC----CEEEE
Confidence 35689999999999999999999999 999999999997 69999999999999986533 333332 35677
Q ss_pred ecccccc
Q psy11409 239 VKPYVLD 245 (320)
Q Consensus 239 ikpy~~~ 245 (320)
++...++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 7666433
No 120
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=9.6e-15 Score=114.35 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS--LTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT--TTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC--CCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 456799999999999999999999999999976665543 4689999999999999999999987664
No 121
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=1.3e-15 Score=113.19 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=54.7
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||+|+++++|++||+...
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN--KTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC--CCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 69999999999999999999999999876555543 468999999999999999999998643
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=6.8e-15 Score=124.87 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQ 229 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~ 229 (320)
.++.++|||+|||..+|+++|+++|++ ||.|..|.|+.|++++.+||||||+|.+.++|.+||+. .-..|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346789999999999999999999999 99999999999999999999999999999999999985 333443
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=114.81 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||+|||+.+|+++|+++|++ ||.|..|.|+.|+. .++|||||+|.+.++|.+||+. .-..+.+ +.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 84 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG----RK 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 345689999999999999999999999 99999999999964 3999999999999999999974 2233432 45
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|+...
T Consensus 85 l~v~~a~ 91 (103)
T 2cq3_A 85 IEVNNAT 91 (103)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 6666553
No 124
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-15 Score=119.71 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.++|||||||.++|+++|+++|++ ||.|..|.|+.|+ ++.++|||||+|.+.++|.+||+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 9999999999997 999999999999999999999974
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=118.35 Aligned_cols=75 Identities=12% Similarity=-0.051 Sum_probs=59.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE-ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVV-DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v-~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
.+..+|||+|||+++||++|+++|++||.|.. +.+..+ .+++++|||||+|+++++|++||+......++.+|++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~---~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD---FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC---SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC---CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34679999999999999999999999999985 444443 3589999999999999999999987333334333333
No 126
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.9e-15 Score=115.67 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCccchHHHHH----HHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-ccccccCc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELA----MIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-FVQLQHGE 232 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~----~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-~~~i~~~~ 232 (320)
....++|||||||+.+|+++|+ ++|++ ||.|.+|.|++|+++ ||||||+|.+.++|.+||+.- -..+.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~--- 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG--- 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 3456899999999999999999 99999 999999999999876 999999999999999999842 22333
Q ss_pred cceEEEeccc
Q psy11409 233 IDKRVEVKPY 242 (320)
Q Consensus 233 ~~k~v~ikpy 242 (320)
.++|.|...
T Consensus 79 -gr~l~V~~a 87 (96)
T 2dgx_A 79 -SKKILVSLA 87 (96)
T ss_dssp -TEEEEEEEC
T ss_pred -CeEEEEEEc
Confidence 356666655
No 127
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.9e-15 Score=117.04 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=54.0
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCC--CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFG--PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG--~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+|||||||+++|+++|+++|++|| +|..+...++. .+|++||||||+|.++++|++||+..++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~--~~g~~kG~afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR--ANGQSKGFALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT--TTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC--CCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence 4899999999999999999999999 88766555543 4789999999999999999999987665
No 128
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=118.62 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+..++|||+|||+.+|+++|+++|++ ||.|..+.++.|+.++.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 44589999999999999999999999 99999999999999999999999999999999999975
No 129
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=3.5e-15 Score=121.83 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCC---eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccce
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGG---VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDK 235 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~---V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k 235 (320)
....+|||||||+++|+++|+++|++ ||. |..|.|++|++ |++||||||+|.+.++|.+||+..-..|.+ +
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~g----r 88 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGH----R 88 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETT----E
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECC----e
Confidence 34689999999999999999999999 999 89999999986 999999999999999999999854344433 4
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
.|+|.+..
T Consensus 89 ~i~V~~a~ 96 (118)
T 2db1_A 89 YIEVFKSH 96 (118)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 66666553
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-15 Score=112.84 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=56.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
.+|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||.|.++++|++|++..+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 65 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP--LTKRSRGFGFVTFMDQAGVDKVLAQSRHE 65 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC--CSSSCSSEEEECCCCTTHHHHHHHTTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC--CCCCcCceEEEEEcCHHHHHHHHHhCCCc
Confidence 479999999999999999999999999865554442 46899999999999999999999977643
No 131
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=124.24 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCe----eEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccce
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGV----CYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDK 235 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V----~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k 235 (320)
...+|||+|||+++|+++|+++|++ ||.| ..|.|+.| .+|++||||||+|.+.++|.+||+..-..+.+ +
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g----R 95 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGK----R 95 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSS----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC----e
Confidence 4589999999999999999999999 9986 69999999 49999999999999999999999864444443 3
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
.|+|.+..
T Consensus 96 ~i~V~~a~ 103 (123)
T 2dha_A 96 YIELFRST 103 (123)
T ss_dssp EECCEEEC
T ss_pred EEEEEECC
Confidence 66666654
No 132
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=116.96 Aligned_cols=64 Identities=27% Similarity=0.241 Sum_probs=60.3
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||+|||..+|+++|+++|++ ||.|..+.|+.|+ ++.++|||||+|.+.++|.+||+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHH
Confidence 345789999999999999999999999 9999999999997 699999999999999999999984
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=4e-15 Score=121.33 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=66.0
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
.++|||||||..+|+++|+++|++ ||.|..|.|+.|+.++.++|||||+|.+.++|.+||+..-..+.+ +.|.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g----~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG----RTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC----eEEEEE
Confidence 489999999999999999999999 999999999999999999999999999999999999433333432 455555
Q ss_pred cc
Q psy11409 241 PY 242 (320)
Q Consensus 241 py 242 (320)
..
T Consensus 111 ~a 112 (124)
T 2jwn_A 111 PK 112 (124)
T ss_dssp ES
T ss_pred EC
Confidence 44
No 134
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=114.72 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||+|||+.+|+++|+++|++ ||.|..+.|..| ++.++|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 999999999999 899999999999999999999984
No 135
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=1.6e-14 Score=114.32 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. +++++|||||+|.+.++|++||+..+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP---DGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS---SSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 3457899999999999999999999999999977666653 589999999999999999999987654
No 136
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=114.05 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR--VTGQHQGYGFVEFLSEEDADYAIKIMDM 79 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS--SSCSBCSCEEEEESSHHHHHHHHHHSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcCCcEEEEEECCHHHHHHHHHHhCC
Confidence 4557899999999999999999999999999976666543 3689999999999999999999997654
No 137
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=120.10 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCC---eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccce
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGG---VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDK 235 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~---V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k 235 (320)
+...+|||||||+++|+++|+++|++ ||. |..|.|++|+. |++||||||+|.+.++|.+||+..-..+.+ +
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~g----r 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQ----R 82 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSS----S
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCC----e
Confidence 45689999999999999999999999 999 99999999986 999999999999999999999843333433 3
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
.|+|.+..
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 45555553
No 138
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=119.71 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||+++|+++|+++|++ ||.|.+|.|+.| ||||||+|.+.++|.+||+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 999999999987 79999999999999999984
No 139
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=1.3e-15 Score=118.20 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+.++|||+|||+.+|+++|+++|++ ||.|..+.|+.|+.++.+||||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 4589999999999999999999999 99999999999999999999999999999999999984
No 140
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=114.77 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=58.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCC-CCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAES-KSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~-~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.+.++|||+|||+++|+++|+++|++||+|..+.+.++.. ..+++++|||||+|.++++|++||+..+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 34678999999999999999999999999998665555432 11458999999999999999999997654
No 141
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=6.1e-15 Score=126.74 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..|.|+.|+.+|.++|||||+|.+.++|.+||+. .-..|.+ +.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 143 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QT 143 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 345678999999999999999999999 99999999999999999999999999999999999975 2233432 45
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|...
T Consensus 144 l~V~~a 149 (165)
T 1rk8_A 144 IQVDWC 149 (165)
T ss_dssp CEEEES
T ss_pred EEEEEe
Confidence 555554
No 142
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.3e-15 Score=113.87 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=58.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+..+. .+++++|||||.|.++++|++||+..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK--TTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS--SSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 357799999999999999999999999999976655543 4689999999999999999999987654
No 143
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.1e-15 Score=117.50 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+..+|||+|||+.+|+++|+++|++ ||.|..+.|+.|+ ++.+||||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHH
Confidence 35689999999999999999999999 9999999999998 999999999999999999999984
No 144
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=6.2e-15 Score=112.46 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+..+|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||.|.++++|++||+..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM--ATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 46799999999999999999999999999976665543 4689999999999999999999997654
No 145
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-14 Score=114.06 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=59.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||.|.+.++|++||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP--DTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS--SSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 3457899999999999999999999999999977666653 468999999999999999999999775
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=2.2e-15 Score=115.97 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=58.0
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++|||||||..+|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.+ |.+|++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 58999999999999999999999 999999999999999999999999999999 9999975
No 147
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.4e-15 Score=113.87 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEe-cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVD-WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~-~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+-++.+|||+|||+++|+++|+++|++||+|..+ .+.++. .+++++|||||+|+++++|++||+..+.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 70 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP--DTGNSKGYAFINFASFDASDAAIEAMNG 70 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT--TTCSCCSEEEEEBSSHHHHHHHHHTTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC--CCCCcCeEEEEEECCHHHHHHHHHHcCC
Confidence 3467899999999999999999999999999865 555542 4689999999999999999999997654
No 148
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=1.5e-14 Score=116.62 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~l~g 89 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK--QTNLSKCFGFVSYDNPVSAQAAIQSMNG 89 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS--SSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCCcCccEEEEECCHHHHHHHHHHcCC
Confidence 3456899999999999999999999999999876665543 3689999999999999999999987654
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=8.6e-15 Score=126.49 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccccccc
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQH 230 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~ 230 (320)
++.++|||||||+++|+++|+++|++ ||.|.+|.|+.|+.++.++|||||+|.+.++|.+||+..-..+.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECC
Confidence 34689999999999999999999999 999999999999999999999999999999999999874444443
No 150
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-14 Score=113.57 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=61.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+. .+..++..|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL--KTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS--SSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC--CCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 4457899999999999999999999999999976665543 4689999999999999999999985 33333444444
No 151
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-15 Score=123.19 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
....+|||||||+.+|+++|+++|++ ||.|..+.++.|..++++||||||+|.+.++|.+||+..-..|.+ +.|+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g----r~i~ 97 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGN----RFIQ 97 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTT----SCBE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECC----cEEE
Confidence 44589999999999999999999999 999999777777789999999999999999999999844444443 3555
Q ss_pred eccc
Q psy11409 239 VKPY 242 (320)
Q Consensus 239 ikpy 242 (320)
|.+.
T Consensus 98 V~~a 101 (124)
T 1wel_A 98 VHPI 101 (124)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5544
No 152
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=8.1e-15 Score=111.33 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=58.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||+|+++++|++|++..+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 71 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY--ETEKHRGFAFVEFELAEDAAAAIDNMNE 71 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET--TTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC--CCCccccEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999999976555543 4688999999999999999999976554
No 153
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=1.1e-14 Score=110.14 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=56.6
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||.|.++++|++|++..+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g 65 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM--QTGSSRGYGFVSFTSQDDAQNAMDSMQG 65 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT--TTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC--CCCCccceEEEEECCHHHHHHHHHHhcC
Confidence 489999999999999999999999999976665543 4689999999999999999999987553
No 154
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=113.95 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP--HTKAPRGFAFVRFHDRRDAQDAEAAMDG 77 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS--SSCSBCSCEEEEESSSSHHHHHHHHHSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCCCCeEEEEEECCHHHHHHHHHHcCC
Confidence 446799999999999999999999999999976665543 4689999999999999999999997554
No 155
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=112.96 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=59.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+..+. +++++|||||.|.++++|++||+..+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR---AGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---CCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 4557899999999999999999999999999977666643 589999999999999999999987654
No 156
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=113.28 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..|.|+.|+.+ +||||||+|.+.++|.+||+. .-..+. .+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL----GKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC----CCe
Confidence 345689999999999999999999999 999999999999644 799999999999999999984 333343 356
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|+..
T Consensus 85 l~V~~a 90 (103)
T 2cqi_A 85 VKVNWA 90 (103)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666655
No 157
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=115.85 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=60.1
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.+.++++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||.|.++++|++||+..+.
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS--ETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET--TTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC--CCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 345567899999999999999999999999999866555543 4689999999999999999999986654
No 158
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.3e-15 Score=117.96 Aligned_cols=63 Identities=11% Similarity=-0.056 Sum_probs=53.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
+.+..+|||+|||+++||++|+++|++||.|. +.+.++. ++++||||||+|+++++|++||+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~-v~i~~d~---~g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMR-VHIEIGP---DGRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCSE-EEEEESS---SSCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCceE-EEEEECC---CCCEeeEEEEEECCHHHHHHHHHh
Confidence 34567999999999999999999999999764 4444432 589999999999999999999964
No 159
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=115.52 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+......++..|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK--TTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS--SSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 346799999999999999999999999999976666653 4689999999999999999999988222334444444
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.6e-14 Score=114.41 Aligned_cols=68 Identities=21% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||.|.+.++|++||+..+.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR--FTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS--SSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 3456799999999999999999999999999976666553 4689999999999999999999987654
No 161
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=9.3e-15 Score=132.81 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCC--CeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-ccccccc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYG--GVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQH 230 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG--~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~ 230 (320)
...+|||||||+.+|+++|+++|++ || .|..|.|++|+.|+++||||||+|.+.++|.+||+. .-..|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC
Confidence 3578999999999999999999999 99 999999999999999999999999999999999985 2234443
No 162
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.6e-14 Score=112.42 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. ..+++++|||||+|.++++|++||+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM-TGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC-SSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC-CCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 4457899999999999999999999999999976665541 136899999999999999999999876
No 163
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=111.89 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCcEEEcCCCCCC------CHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHY------DHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dv------tEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+++|||||||+++ |+++|+++|++||+|..+.+.+ .+|+++|||||+|+++++|++||+..++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~----~~g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----EDGKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC----BTTBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC----CCCcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 3689999999999 7799999999999998655442 3589999999999999999999987654
No 164
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=110.90 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+..+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK--DTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS--SSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 356799999999999999999999999999976665543 4689999999999999999999987654
No 165
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=113.79 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY--ETEKHRGFAFVEFELAEDAAAAIDNMNE 76 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS--SSCCCSSEEEECCSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecC--CCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999999866555543 4689999999999999999999987554
No 166
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=113.38 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK--TTGQSKGFAFISFHRREDAARAIAGVSG 79 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS--SSCSEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC--CCCceeeEEEEEECCHHHHHHHHHHcCC
Confidence 3457899999999999999999999999999976666543 4689999999999999999999997664
No 167
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=117.75 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=59.9
Q ss_pred CCCCCCcEEEcCCCCC-CCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc-----CCC
Q psy11409 49 LSFPSPPQFPLQGTPH-YDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV-----DED 122 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~d-vtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~-----~~~ 122 (320)
...++.+|||||||++ +||++|+++|++||+|..++++ ++||||||+|+++++|++||+..+. .+.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~--------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM--------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE--------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe--------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3567889999999998 9999999999999999977664 3689999999999999999986532 234
Q ss_pred ceEEEec
Q psy11409 123 KCYLCVS 129 (320)
Q Consensus 123 ~~~vkis 129 (320)
.++|..+
T Consensus 93 ~l~V~~a 99 (112)
T 1x4f_A 93 CVKVDLS 99 (112)
T ss_dssp CCEEEEE
T ss_pred EEEEEEC
Confidence 5555554
No 168
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=119.71 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=56.6
Q ss_pred ccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 45 DILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 45 ~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+......++++|||||||+++||++|+++|++||.|..+.+.+ .||||||+|+++++|++||+..+
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~--------~kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--------GKNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG--------GGTEEEEECSCHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhc
Confidence 3334556788999999999999999999999999999766543 37999999999999999998654
No 169
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=113.63 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=58.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR--ETQRSRGFGFVTFENIDDAKDAMMAMNG 76 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS--SSCSCCSEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 456799999999999999999999999999876665543 4688999999999999999999977654
No 170
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=117.11 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCccchHHHHH---HHHhhhCCCeeEEEEecCCCCC---CcceEEEEEecCHHHHHHHHHh-ccccccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELA---MIMDRLYGGVCYAGIDTDPELK---YPKGAGRVAFASQASYIAAISA-RFVQLQH 230 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~---~~F~~~fG~V~~v~I~~D~~tg---~pkGfgfVtF~~~esa~kAi~~-~~~~i~~ 230 (320)
.....+|||||||+.+|+++|. ++|++ ||.|..+.|+.|+.++ .++|||||+|.+.++|.+||+. .-..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC-
Confidence 3456899999999999999999 99999 9999999999998754 5669999999999999999985 333343
Q ss_pred CccceEEEecccc
Q psy11409 231 GEIDKRVEVKPYV 243 (320)
Q Consensus 231 ~~~~k~v~ikpy~ 243 (320)
.+.|.|....
T Consensus 90 ---gr~l~V~~a~ 99 (111)
T 2cpi_A 90 ---GRTLKASLGT 99 (111)
T ss_dssp ---TEEEEEESCC
T ss_pred ---CEEEEEEecc
Confidence 3577777774
No 171
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-14 Score=112.21 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++ +++++|||||.|.+.++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME----GGRSKGFGFVCFSSPEEATKAVTEMNG 77 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC----SSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCCcCEEEEEEECCHHHHHHHHHHhCC
Confidence 446789999999999999999999999999997666554 478999999999999999999987554
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=3.2e-15 Score=126.42 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
...++|||+|||+++|+++|+++|++ || |+.|.|++|++ +++||||||+|.+.++|.+||+..-..|.+. .|+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR----~i~ 116 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSP-LN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHR----YIE 116 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCS-CC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSC----CCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCE----EEE
Confidence 34589999999999999999999999 99 77999999975 9999999999999999999995433444433 444
Q ss_pred eccc
Q psy11409 239 VKPY 242 (320)
Q Consensus 239 ikpy 242 (320)
|.+.
T Consensus 117 V~~a 120 (139)
T 2hgn_A 117 LFLN 120 (139)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 5444
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=8.8e-15 Score=113.77 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=49.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHH
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLI 114 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL 114 (320)
..+..+|||||||+++||++|+++|++||+|..+.+.+ .+||||||+|+++++|+++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-------~srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-------PFRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-------SCCSEEEEEESCHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-------CCCCEEEEEECCHHHHHHHc
Confidence 34577999999999999999999999999999766544 38999999999999999643
No 174
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=112.72 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeE-EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~-v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.+.++|||||||+++|+++|+++|++||+|. .+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~l~g 74 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR--LTGIPAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS--SSCCEEEEEEEECSCHHHHHHHHHTTTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC--CCCCcCCEEEEEeCCHHHHHHHHHHHcC
Confidence 34578999999999999999999999999998 77666653 4689999999999999999999986654
No 175
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=115.70 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=55.2
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..|.|+.| ||||||+|.+.++|.+||+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 356789999999999999999999999 999999999987 79999999999999999974
No 176
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=112.03 Aligned_cols=68 Identities=18% Similarity=0.047 Sum_probs=58.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE--------ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV--------DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v--------~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+++|+++|+++|++||.|.. +....+. .+++++|||||+|.++++|++||+..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR--ETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT--TTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC--CCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 445779999999999999999999999999986 5555542 4689999999999999999999986553
No 177
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=116.22 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCccc------hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccC
Q psy11409 159 DPRKTVFVGGVPRPL------KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHG 231 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~------TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~ 231 (320)
...++|||||||+.+ |+++|+++|++ ||.|..+.|+ +.+|.+||||||+|.+.++|.+||+. .-..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~-- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD-- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS--
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC--
Confidence 346899999999999 89999999999 9999999999 46999999999999999999999985 222333
Q ss_pred ccce-EEEeccc
Q psy11409 232 EIDK-RVEVKPY 242 (320)
Q Consensus 232 ~~~k-~v~ikpy 242 (320)
.+ .|.|..+
T Consensus 88 --g~~~l~V~~a 97 (105)
T 2nlw_A 88 --KQHTFRVNLF 97 (105)
T ss_dssp --TTCEEEEECS
T ss_pred --CCceEEEEEc
Confidence 23 5666555
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=122.97 Aligned_cols=74 Identities=20% Similarity=0.033 Sum_probs=59.2
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCe----EEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEE
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPL----VVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLC 127 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V----~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vk 127 (320)
+..+|||+||||++||++|+++|++||.| ..+.+.++ .+|++||||||+|+++++|++||+...+..++.+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d---~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY---PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC---TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC---CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 35699999999999999999999999986 33334443 258999999999999999999998744445555554
Q ss_pred e
Q psy11409 128 V 128 (320)
Q Consensus 128 i 128 (320)
|
T Consensus 99 V 99 (123)
T 2dha_A 99 L 99 (123)
T ss_dssp C
T ss_pred E
Confidence 4
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=6.8e-15 Score=123.99 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=60.3
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|||||||+++|+++|+++|++ ||.|.++.|+.|+.+|.++|||||+|.+.++|.+|++.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 579999999999999999999999 99999999999999999999999999999999999985
No 180
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-14 Score=114.18 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=58.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+.+.++. +++++|||||+|+++++|++||+..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR---TSKSRGFAFITFENPADAKNAAKDMNG 70 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST---TTTCCCEEEEECSSHHHHHHHHHHCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 446799999999999999999999999999876665543 689999999999999999999997665
No 181
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=3e-14 Score=114.60 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||.|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM--ATGKSKGYGFVSFFNKWDAENAIQQMGG 79 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC--CCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3457799999999999999999999999999976666553 3689999999999999999999987765
No 182
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9e-15 Score=118.26 Aligned_cols=76 Identities=7% Similarity=-0.144 Sum_probs=60.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCe-EEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPL-VVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V-~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
..+..+|||+|||+++|+++|+++|++||.| ..+.+..+. +++++|||||+|+++++|++||+......++..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~---~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN---NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT---TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC---CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 3456899999999999999999999999999 433344432 589999999999999999999987333344444544
No 183
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=9.4e-15 Score=115.36 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=54.5
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
...+.++|||||||+++|+++|+++|++|| |..+.+.++.. .+|+++|||||+|.++++|++|| ..+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~-~~g~~~g~afV~f~~~~~a~~Ai-~l~ 81 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS-NPERLKGFGYAEFEDLDSLLSAL-SLN 81 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT-TTCCCCSCEEEEECCHHHHHHHH-HTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC-cCCccCeEEEEEECCHHHHHHHH-hcC
Confidence 345678999999999999999999999999 88766655431 36899999999999999999999 554
No 184
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=116.84 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+.+..+|||||||+++||++|+++|++||+|..+++++ .||||||+|+++++|++||+..+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--------~kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--------GKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--------CCCEEEEEECCHHHHHHHHHHhc
Confidence 45578999999999999999999999999999776654 37999999999999999998654
No 185
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=1.6e-14 Score=110.57 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
.++|||+|||+++|+++|+++|++||+|..+....+. .+++++|||||+|.++++|++|+ ..+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~a~-~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK--FSGHPKGFAYIEFSDKESVRTSL-ALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC--SSSSCCEEEEEEESSTHHHHHHG-GGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC--CCCCcceEEEEEECCHHHHHHHH-hcC
Confidence 5699999999999999999999999999976665543 36899999999999999999999 444
No 186
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=111.45 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=59.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+....+. .+++++|||||+|+++++|++||+..+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ--QSRRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS--SSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC--CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3456799999999999999999999999999976665543 4689999999999999999999997654
No 187
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=113.94 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++.+|||||||+++|+++|+++|++||+|..+...++. .+++++|||||+|.++++|++||+..++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR--RTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC--CCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 446799999999999999999999999999977666553 4689999999999999999999987554
No 188
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=8e-15 Score=116.04 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=57.8
Q ss_pred CCcEEEcCCCC------CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTP------HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~------dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+++|||||||+ ++++++|+++|++||+|..+.+.++. .+|++||||||+|.+.++|++||+..+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~--~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE--ATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET--TTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 56999999999 99999999999999999976665553 4689999999999999999999987654
No 189
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-15 Score=119.12 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEe
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEV 239 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~i 239 (320)
+.++|||||||+.+|+++|+++|++ ||.|.. .+++|+.++.+||||||+|.+.++|.+||+..-..+.+ +.|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g----~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFG----NEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTT----BCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECC----cEEEE
Confidence 4689999999999999999999999 999999 88899899999999999999999999999743334442 45555
Q ss_pred ccc
Q psy11409 240 KPY 242 (320)
Q Consensus 240 kpy 242 (320)
...
T Consensus 90 ~~a 92 (101)
T 1fj7_A 90 EKP 92 (101)
T ss_dssp ECC
T ss_pred EEc
Confidence 544
No 190
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=115.67 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=61.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+......++..|+|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP--ASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT--TTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEE
Confidence 35799999999999999999999999999876665543 46899999999999999999999873333344445443
No 191
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=114.63 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=55.6
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
....|+++|||+|||+++||++|+++|++||+|..+... ++||||||+|+++++|++|++..+.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~--------~~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM--------PKKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE--------TTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE--------cCCCEEEEEECCHHHHHHHHHHhcC
Confidence 345678899999999999999999999999999976553 3579999999999999999987654
No 192
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=115.89 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=65.0
Q ss_pred CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccce
Q psy11409 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDK 235 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k 235 (320)
...+.++|||||||..+|+++|+++|++ ||.|..+.|..|+ +.+||||||+|.+.++|.+|++. .-..+. .+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 97 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE----GR 97 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3345689999999999999999999999 9999999999995 35999999999999999999984 222333 24
Q ss_pred EEEeccc
Q psy11409 236 RVEVKPY 242 (320)
Q Consensus 236 ~v~ikpy 242 (320)
+|.|...
T Consensus 98 ~l~V~~a 104 (109)
T 2err_A 98 KIEVNNA 104 (109)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 5555554
No 193
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=117.22 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 106 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR--ETRQSRGYGFVKFQSGSSAQQAIAGLNG 106 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET--TTTEEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC--CCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 34557899999999999999999999999999976666553 3689999999999999999999997665
No 194
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=118.67 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=55.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+++|+++|+++|++ ||.|.+|.|+.| ||||||+|.+.++|.+||+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence 346789999999999999999999999 999999999987 79999999999999999974
No 195
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=115.94 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCCCCCeEEEcCCCc-cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 157 PLDPRKTVFVGGVPR-PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~-~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..++.++|||||||+ .+|+++|+++|++ ||.|.+|.|+.| ||||||+|.+.++|.+||+.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK------INEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH
Confidence 345789999999999 9999999999999 999999999987 59999999999999999985
No 196
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=110.01 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.+|||+|||+++|+++|+++|++||+|..+....+.. ..++++|||||+|.++++|++|++..++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM-HPHLSKGYAYVEFENPDEAEKALKHMDG 69 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-EEEEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC-CCCCCCcEEEEEEecHHHHHHHHHHcCC
Confidence 3467999999999999999999999999999665544431 1234899999999999999999997554
No 197
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=112.94 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=57.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCC-eEEeccc-ccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGP-LVVDWPH-KAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~-V~v~~p~-k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+.+..+|||||||+++|+++|+++|++||. |..+... ++ ..+++++|||||+|.++++|++||+..+
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~--~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA--ADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS--CTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC--CCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 445779999999999999999999999998 9865554 33 2568999999999999999999999764
No 198
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=123.55 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCC--CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFG--PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG--~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+|||||||+++||++|+++|++|| .|..+.++.+. .+|++||||||+|.++++|++||+..+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~--~tg~skGfaFV~f~~~~~A~~Ai~~lng 121 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR--ANGQSKGYAEVVVASENSVHKLLELLPG 121 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT--TTCCEEEEEEEEESCHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 457999999999999999999999999 88877666653 4799999999999999999999998664
No 199
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.5e-15 Score=120.68 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=55.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..+..+|||+|||+++|+++|+++|++||.|..++.+.+. .+|+++|||||+|+++++|++||+ .+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~--~~g~~~G~afV~F~~~~~a~~Al~-~~ 87 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG--PNGKATGEGFVEFRNEADYKAALC-RH 87 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC--TTSSEEEEEEEEBSSSHHHHHHHT-SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC--CCCCCCeEEEEEECCHHHHHHHHH-hC
Confidence 3456899999999999999999999999999753333322 468999999999999999999998 44
No 200
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=3.4e-14 Score=109.54 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=57.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+.+.++ +++++|||||.|.++++|++||+..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~g~~~g~afV~f~~~~~a~~a~~~l~g 70 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME----NGKSKGCGVVKFESPEVAERACRMMNG 70 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES----SSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc----CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 45789999999999999999999999999997655542 578999999999999999999987553
No 201
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=113.33 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCC-CCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSY-FPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~t-g~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++|| |..+.+.++. .+ ++++|||||+|+++++|++|| ..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~--~~~g~~~g~afV~f~~~~~a~~A~-~l~g 78 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP--SNPERLKGFGYAEFEDLDSLLSAL-SLNE 78 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS--SCTTSBCSCEEEEESSHHHHHHHH-GGGT
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC--CCCCCcCeEEEEEECCHHHHHHHH-hcCC
Confidence 34567999999999999999999999999 8866665543 34 899999999999999999999 5443
No 202
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.2e-14 Score=113.07 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..|.++|||||||+.+|+++|+++|++ ||.|..|.|+.+ ||||||+|.+.++|.+||+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 356799999999999999999999999 999999999876 79999999999999999974
No 203
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=115.04 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
..++|||+|||+++|+++|+++|++||.|..+.+..+. .+++++|||||+|.++++|++||.......++..|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR--NSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC--CSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC--CCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEE
Confidence 35799999999999999999999999999977666543 4689999999999999999999933333334444444
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.1e-14 Score=122.12 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=54.0
Q ss_pred CeEEEcCC----CccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecC----H-HH---HHHHHH
Q psy11409 162 KTVFVGGV----PRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFAS----Q-AS---YIAAIS 222 (320)
Q Consensus 162 ~tVFVGnL----p~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~----~-es---a~kAi~ 222 (320)
++|||||| |+.+|+++|+.+|++ ||.|.++.+.+||+||.|+|||||+|.+ . ++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 999999999999998 9999999999999999999999999996 3 32 677766
No 205
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=114.01 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=55.5
Q ss_pred CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...|+++|||||||+++|+++|+++|++ ||.|.+|.|+.+ ||||||+|.+.++|.+||+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMPK------KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH
Confidence 3457899999999999999999999999 999999999864 79999999999999999975
No 206
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=115.78 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=54.5
Q ss_pred CCCCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..|+++|||||||+ ++||++|+++|++||+|..+++++ .||||||+|+++++|++||+..+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--------KINEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--------SSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--------CCCEEEEEECCHHHHHHHHHHHc
Confidence 34788999999999 999999999999999999877653 46999999999999999998755
No 207
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=111.51 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEe
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEV 239 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~i 239 (320)
+.++|||||||+.+|+++|+++|++ ||.|..+.|+.| +||||||+|.+.++|++|+.. .+.+. .++|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~----g~~l~v 72 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIK----GISVHI 72 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEET----TEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeC----CEEEEE
Confidence 4689999999999999999999999 999999999987 699999999999999877544 22332 357777
Q ss_pred cccccc
Q psy11409 240 KPYVLD 245 (320)
Q Consensus 240 kpy~~~ 245 (320)
....++
T Consensus 73 ~~a~~~ 78 (88)
T 1wf0_A 73 SNAEPK 78 (88)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 766433
No 208
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=111.81 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=56.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||.|..+....+ ..+++++|||||+|.++++|++||+..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY--NEKGMPTGEAMVAFESRDEATAAVIDLND 79 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE--CSSSCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE--CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 34578999999999999999999999999974333333 24689999999999999999999987764
No 209
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.8e-14 Score=112.18 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=58.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. +++++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK---DGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999999976665543 489999999999999999999986554
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=1.1e-13 Score=117.16 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=73.6
Q ss_pred CCcchhhHHHHHHhhhhcCCCC-----------------CCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE
Q psy11409 20 LDDASLLDDFLLLLSRALVPNL-----------------GPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV 82 (320)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~p~~-----------------~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v 82 (320)
..+++.+++.|+..+.....+- ..........+..+|||||||+++|+++|+++|++||+|..
T Consensus 20 f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~ 99 (158)
T 2kn4_A 20 AVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 99 (158)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEE
T ss_pred HHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE
Confidence 5677888888877664322210 00001112344689999999999999999999999999997
Q ss_pred ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 83 DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 83 ~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.+.++. .+|+++|||||.|.++++|++||+..+.
T Consensus 100 ~~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~l~g 134 (158)
T 2kn4_A 100 VYIPRDR--YTKESRGFAFVRFHDKRDAEDAMDAMDG 134 (158)
T ss_dssp EECCCCS--SCTTSCCEEEEEESBHHHHHHHHHHSTT
T ss_pred EEEeecC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 6665543 4689999999999999999999987654
No 211
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=116.08 Aligned_cols=72 Identities=8% Similarity=-0.075 Sum_probs=58.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
..+|||+||||++||++|+++|++| .|..+.+.++. .|+++|||||+|+++++|++||+...+..++.+|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~---~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH---VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT---TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC---CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3599999999999999999999999 77755555543 389999999999999999999965444445556655
No 212
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=5.5e-14 Score=113.54 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=59.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.+++++++||+..+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK--QTSLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS--SSSCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 4456899999999999999999999999999976665543 4689999999999999999999997654
No 213
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=1.4e-14 Score=122.10 Aligned_cols=75 Identities=11% Similarity=-0.126 Sum_probs=59.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCC---eEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEE
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGP---LVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLC 127 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~---V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vk 127 (320)
....+||||||||++||++|+++|++||. |..+.+.++. .|++||||||+|+++++|++||+......++..|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~---~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR---EGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS---SSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC---CCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 34679999999999999999999999999 6544455443 28999999999999999999998333334444444
Q ss_pred e
Q psy11409 128 V 128 (320)
Q Consensus 128 i 128 (320)
|
T Consensus 119 V 119 (136)
T 2hgl_A 119 V 119 (136)
T ss_dssp E
T ss_pred E
Confidence 4
No 214
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.4e-14 Score=118.13 Aligned_cols=74 Identities=11% Similarity=-0.079 Sum_probs=59.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCC---eEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGP---LVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~---V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
...+|||+|||+++||++|+++|++||. |..+.+.++. .|++||||||+|+++++|++||+......++..|+|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~---~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR---EGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS---SSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC---CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 4679999999999999999999999999 6644444443 389999999999999999999994333445555555
No 215
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=3.3e-14 Score=113.52 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=59.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.+..+|||||||+++|+++|+++|++||+|..+.+..+. .+++++|||||+|.+.++|++||+..++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~Ai~~l~g 90 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR--RTGFSKGYALVEYETHKQALAAKEALNG 90 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT--TTSSBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC--CCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 3456799999999999999999999999999976665543 4689999999999999999999987654
No 216
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=112.84 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCCCCcEEEcCCCCCC------CHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHY------DHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dv------tEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+++|||||||+++ |+++|+++|++||+|..+.+.+ .+|+++|||||+|.++++|++||+..++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~----~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----EDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC----BTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC----CCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3446899999999999 7899999999999999765543 3589999999999999999999998665
No 217
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.2e-14 Score=110.25 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=56.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++. +.++|||||.|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH----TSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC----CSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC----CCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 4457899999999999999999999999999976665543 34799999999999999999986554
No 218
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=1.1e-14 Score=112.93 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=55.8
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+|||+|||+++|+++|+++|++||.|..+....+. .+++++|||||+|.++++|++||+..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~--~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--EKGMPTGEAMVAFESRDEATAAVIDLND 79 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC--TTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC--CCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 5799999999999999999999999999844444432 4689999999999999999999986543
No 219
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=2.7e-14 Score=112.86 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..+..+|||+|||+++|+++|+++|++|| |..+.+.++. .+++++|||||+|+++++|++|| ..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~A~-~l~ 76 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK--DTDKFKGFCYVEFDEVDSLKEAL-TYD 76 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS--SSCSEEEEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC--CCCccceEEEEEECCHHHHHHHH-hhC
Confidence 44577999999999999999999999998 8766665553 46899999999999999999999 444
No 220
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=2.1e-14 Score=119.54 Aligned_cols=66 Identities=12% Similarity=-0.112 Sum_probs=54.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeE-EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~-v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+||||||||++||++|+++|++||.+. .+.+.++. .|++||||||+|+++++|++||+....
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~---~GrsrGfaFV~F~~~e~A~~Al~~~~~ 106 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDP---EGKITGEAFVQFASQELAEKALGKHKE 106 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCS---SSSSCSEEEEEESSTTHHHHHHTTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECC---CCCCceEEEEEECCHHHHHHHHHHCCC
Confidence 4467999999999999999999999995441 45554443 389999999999999999999986443
No 221
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=4.1e-14 Score=118.51 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++++|||||||+.+|+++|+++|++ ||.|..+.|..|+.+|.++|+|||+|.+.++|.+|++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 3589999999999999999999999 99999999999999999999999999999999999974
No 222
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=110.74 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.++|||+|||+++|+++|+++|++||+|..+.+.++. +++++|||||.|+++++|++||+..+.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR---EGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC---CCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 46799999999999999999999999999976666543 388999999999999999999986553
No 223
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=3e-14 Score=120.49 Aligned_cols=62 Identities=27% Similarity=0.422 Sum_probs=59.3
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCC--CcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELK--YPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg--~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|||||||+++|+++|+++|++ ||.|.++.|+.|+.++ .++|||||+|.+.++|.+|++.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 579999999999999999999999 9999999999999887 8999999999999999999974
No 224
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=117.50 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=58.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE--ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVV--DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v--~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+++||++|+++|++||.|.. +.++++. .+|++||||||+|+++ ++++||...++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~--~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK--QTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS--SSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC--CCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 456789999999999999999999999999964 5565553 4789999999999999 99999988765
No 225
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=112.76 Aligned_cols=62 Identities=19% Similarity=0.080 Sum_probs=54.2
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
...++++|||||||+++||++|+++|++||.|..+++.+ .||||||+|+++++|++|++..+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--------GKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CCCEEEEEECCHHHHHHHHHHhc
Confidence 345788999999999999999999999999999765543 38999999999999999998653
No 226
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=116.19 Aligned_cols=63 Identities=11% Similarity=-0.121 Sum_probs=54.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCC---eEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGP---LVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~---V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
....+|||||||+++|+++|+++|++||. |..+.+.++. .|+++|||||+|+++++|++||+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~---~g~~~G~afV~F~~~~~a~~Al~~ 74 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR---DGKRRGDALIEMESEQDVQKALEK 74 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT---TSTTCSEEEEEBSSHHHHHHHHTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC---CCCEeeEEEEEECCHHHHHHHHHh
Confidence 34679999999999999999999999998 6644444432 289999999999999999999983
No 227
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=9.1e-15 Score=115.24 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=59.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEe
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCV 128 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vki 128 (320)
++++|||||||+++|+++|+++|++||+|..+.+.++. +++++|||||+|+++++|++||+ .....++..+.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR---TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 35799999999999999999999999999976666543 58999999999999999999998 333334444443
No 228
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=111.13 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhcc-CCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRR-FGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~-FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++ ||+|..+.+.++. +++++|||||.|.++++|++||+..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g 73 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ---TGVSKGYGFVKFTDELEQKRALTECQG 73 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT---TCCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC---CCCccceEEEEECCHHHHHHHHHHccC
Confidence 445789999999999999999999999 9999976665543 589999999999999999999997664
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.5e-14 Score=111.26 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.+.++|++||+..++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~--~~g~~~g~afV~f~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR--ETGKPKGYGFCEYQDQETALSAMRNLNG 72 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET--TTTEEEEEEEEECSCHHHHHHHHHHSSS
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 5799999999999999999999999999866655543 3689999999999999999999987664
No 230
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.5e-14 Score=111.06 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=56.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.. +++++|||||+|+++++|++||+..+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-----RRGGPPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-----SSSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-----CCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 34578999999999999999999999999999765533 356899999999999999999977654
No 231
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=108.90 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=57.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++. +.++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----RGSKGFGFVTFENSADADRAREKLHG 77 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT----TTTCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC----CCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4457899999999999999999999999999976665543 24899999999999999999987554
No 232
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=110.10 Aligned_cols=78 Identities=26% Similarity=0.331 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCcc-ceE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEI-DKR 236 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~-~k~ 236 (320)
....+|||+|||+++|+++|+++|++ ||.|..+.|+.| |||||+|.+.++|.+||+. .-..+.+... .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 34689999999999999999999999 999999999998 9999999999999999985 2233443222 257
Q ss_pred EEeccccc
Q psy11409 237 VEVKPYVL 244 (320)
Q Consensus 237 v~ikpy~~ 244 (320)
|+|+...+
T Consensus 85 i~V~~a~~ 92 (108)
T 1x4c_A 85 IRVKVDGP 92 (108)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 78877743
No 233
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.8e-14 Score=112.19 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeE--------EecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLV--------VDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~--------v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||.|. .+.+..+ +.+++++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~--~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD--KETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC--TTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe--CCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 34578999999999999999999999999998 2334333 24689999999999999999999987554
No 234
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=5.1e-14 Score=116.88 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=60.2
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+..+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~tg~~~G~afV~F~~~~~A~~Ai~~lng 110 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ--QSRRSRGFAFVYFENVDDAKEAKERANG 110 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS--SSSCCCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 34567899999999999999999999999999976666553 4689999999999999999999997654
No 235
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-14 Score=109.38 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|.+ .++ .+++++|||||+|.++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~---~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g 75 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKV---PQN---QNGKSKGYAFIEFASFEDAKEALNSCNK 75 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEEC---CBC---SSSCBCSEEEEECSSHHHHHHHHHHTSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEE---EEC---CCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 456789999999999999999999999999953 222 3578999999999999999999997664
No 236
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-14 Score=114.18 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=61.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHH---HHhccCCCeEEecccccCC-CCCCCCcceEEEEeCCHHHHHHHHHhCcc-CCCceE
Q psy11409 51 FPSPPQFPLQGTPHYDHEEIT---ASFRRFGPLVVDWPHKAES-KSYFPPKGYAFLLFQDESSVQQLIDACIV-DEDKCY 125 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~---~~Fs~FG~V~v~~p~k~~~-~~tg~skGygFV~F~~eesv~kaL~~~~~-~~~~~~ 125 (320)
....+|||||||+++|+++|+ ++|++||+|..+.+.++.. ..+++++|||||+|+++++|++||+..+. ..++..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 9999999999765555432 12457889999999999999999997554 234444
Q ss_pred EEec
Q psy11409 126 LCVS 129 (320)
Q Consensus 126 vkis 129 (320)
|++.
T Consensus 93 l~V~ 96 (111)
T 2cpi_A 93 LKAS 96 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 237
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.7e-14 Score=109.70 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=56.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCceEEEec
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVS 129 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~~vkis 129 (320)
.++++|||||||+++|+++|+++|++||+|..+.+.+ .+||||||+|+++++|++|+.. ....++..|+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-------~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-------PFRAFAFVTFADDQIAQSLCGE-DLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS-------SCCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec-------CCCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEE
Confidence 4578999999999999999999999999999765543 2789999999999999876543 222344445543
No 238
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=3.7e-14 Score=115.43 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCC-CeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYG-GVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG-~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...+|||||||+++|+++|+++|++ || .|..+.|..+ .++|||||+|.+.++|.+||+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR----DFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999 99 9999999754 4899999999999999999975
No 239
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=7.9e-14 Score=113.90 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+..+. .++.++|||||+|.++++|++||+..+.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 86 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR--RTGYLKGYTLVEYETYKEAQAAMEGLNG 86 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT--TTSSBCSCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3446799999999999999999999999999976665543 3689999999999999999999987554
No 240
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.5e-14 Score=110.76 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||..+|+++|+++|++ ||.|..+.|..+ +.+||||||+|.+.++|.+||+. .-..+. .++|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 91 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRL 91 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 45689999999999999999999999 999999999765 45899999999999999999964 223333 3466
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 92 ~V~~a 96 (109)
T 1x4a_A 92 RVEFP 96 (109)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 66655
No 241
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=4.2e-14 Score=118.99 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=60.5
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++++|||||||.++|+++|+++|++ ||.|..+.|+.|+.++.++|+|||+|.+.++|.+|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHh
Confidence 4689999999999999999999999 99999999999999999999999999999999999973
No 242
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=1.3e-13 Score=120.45 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...+..+|||+|||+.+|+++|+++|++ ||.|+.|.|..|+ ++.++|||||+|.+.++|.+||+.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHH
Confidence 3455689999999999999999999999 9999999999998 999999999999999999999984
No 243
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=111.22 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..|+++|||+|||+++||++|+++|++||.|..+++.+ .||||||+|+++++|++||+..+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--------~kg~aFVef~~~~~A~~Ai~~l~ 72 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--------FKRQALVEFENIDSAKECVTFAA 72 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--------CCCEEEEEECCHHHHHHHHHHhc
Confidence 35678999999999999999999999999999765543 47999999999999999998653
No 244
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=114.30 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++||+..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY--ETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT--TTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC--CCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 4567899999999999999999999999999976555543 4689999999999999999999987654
No 245
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-15 Score=121.29 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccc
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY--------AGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQ 229 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~--------v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~ 229 (320)
.+.++|||||||..+|+++|+++|++ ||.|.. +.|++|+.++.+||||||+|.+.++|.+||+. .-..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35689999999999999999999999 999999 99999999999999999999999999999974 223333
Q ss_pred cCccceEEEecccc
Q psy11409 230 HGEIDKRVEVKPYV 243 (320)
Q Consensus 230 ~~~~~k~v~ikpy~ 243 (320)
.++|.|....
T Consensus 84 ----g~~l~V~~a~ 93 (116)
T 2lcw_A 84 ----GNPIKVSFAT 93 (116)
Confidence 2455555553
No 246
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=4.8e-14 Score=114.76 Aligned_cols=72 Identities=8% Similarity=-0.094 Sum_probs=57.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCC-CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFG-PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV 128 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG-~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki 128 (320)
....+|||||||+++|+++|+++|++|| +|..+.+.. ++++|||||+|+++++|++||+..+.. .++..|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3456999999999999999999999999 888654422 358999999999999999999876542 33334443
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.4e-14 Score=110.16 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||+|||+.+|+++|+++|++ ||.| .|+.| .++.+||||||+|.+.++|.+||+. .-..+. .+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEE
Confidence 45689999999999999999999999 9987 78888 6999999999999999999999984 223343 3566
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
.|....
T Consensus 84 ~v~~a~ 89 (101)
T 2fc9_A 84 RLELQG 89 (101)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 666653
No 248
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=7e-14 Score=110.90 Aligned_cols=67 Identities=13% Similarity=0.021 Sum_probs=58.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+..+. +++++|||||.|.++++|++||+..+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g 92 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR---SGRSLGTADVHFERKADALKAMKQYNG 92 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3456799999999999999999999999999866555543 589999999999999999999997554
No 249
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.1e-14 Score=109.31 Aligned_cols=79 Identities=29% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccce
Q psy11409 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDK 235 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k 235 (320)
...+.++|||+|||..+|+++|+++|++ |+ .+.|+.|+.++.++|||||+|.+.++|.+||+. .-..|.+ +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 82 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----N 82 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 3456789999999999999999999997 74 678999999999999999999999999999974 3334443 4
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
+|.|....
T Consensus 83 ~l~V~~a~ 90 (102)
T 2fc8_A 83 KVTLDWAK 90 (102)
T ss_dssp ECEEEECC
T ss_pred EEEEEEec
Confidence 55665553
No 250
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=1.6e-13 Score=110.29 Aligned_cols=61 Identities=16% Similarity=0.358 Sum_probs=56.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.++|||||||..+|+++|+++|++ ||.|..+.|+.|. .++|||||+|.+.++|.+|++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999 9999999999875 4599999999999999999984
No 251
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=103.79 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|+.+ ||||||+|.+.++|.+|++.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR------QQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 35689999999999999999999999 999999999975 79999999999999999985
No 252
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=112.07 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 49 LSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 49 ~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+.++|||||||+++|+++|+++|++||+|..+...++. +.++|||||+|.++++|++|++..++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~----~~~kg~afV~f~~~~~A~~Ai~~l~g 91 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----RGSKGFGFVTFENSADADRAREKLHG 91 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT----TBCTTEEEEECCCSHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC----CCCceEEEEEECCHHHHHHHHHHcCC
Confidence 34567899999999999999999999999999865555542 35899999999999999999987554
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-14 Score=115.83 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||||..+|+++|+++|++ ||.|..+.+..+..++.+||||||+|.+.++|.+||+. .-..+.+ +.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~ 96 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KI 96 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cE
Confidence 346789999999999999999999999 99996665555555899999999999999999999975 3333432 34
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|...
T Consensus 97 l~v~~a 102 (115)
T 2cpx_A 97 LVIEFG 102 (115)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 455444
No 254
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=105.76 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=59.8
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-ccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-FVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-~~~i~~~~~~k~v 237 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+.|. ||||||+|.+.++|.+|++.- -..+. .++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH----GVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS----SCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC----CcEE
Confidence 45689999999999999999999999 9999999998 799999999999999999742 22333 3456
Q ss_pred Eecccc
Q psy11409 238 EVKPYV 243 (320)
Q Consensus 238 ~ikpy~ 243 (320)
.|....
T Consensus 73 ~v~~a~ 78 (90)
T 2dnq_A 73 NVEASK 78 (90)
T ss_dssp EEECSS
T ss_pred EEEECC
Confidence 666553
No 255
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.48 E-value=4.6e-14 Score=114.99 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=56.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+.++|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|.++++|++|| ..+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~a~~A~-~l~ 98 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK--FSGHPKGYAYIEFAERNSVDAAV-AMD 98 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC--TTSSCEEEEEEEESSHHHHHHHH-TTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC--CCCCcccEEEEEECCHHHHHHHH-hcC
Confidence 35799999999999999999999999999976665542 46899999999999999999999 443
No 256
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.7e-14 Score=107.35 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc-CCCceEEEe
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV-DEDKCYLCV 128 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~-~~~~~~vki 128 (320)
....+|||+|||+++|+++|+++|++| .|..+.+.++ .+|+++|||||+|+++++|++||+ .+. ..++..|++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN---AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC---TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC---CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 346799999999999999999999999 7876555554 358999999999999999999999 554 234444444
No 257
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=1.7e-13 Score=116.18 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=59.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+..+.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK--MKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3467899999999999999999999999999866555543 4689999999999999999999997654
No 258
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=108.68 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=61.3
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..+.|..+ ||||||+|.+.++|.+||+. .-..+.+ ++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG----KQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT----BC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC----ce
Confidence 345689999999999999999999999 999999999976 79999999999999999964 2233432 45
Q ss_pred EEeccc
Q psy11409 237 VEVKPY 242 (320)
Q Consensus 237 v~ikpy 242 (320)
|.|...
T Consensus 81 l~v~~a 86 (99)
T 2cpj_A 81 LRVRFA 86 (99)
T ss_dssp CEEEES
T ss_pred EEEEEc
Confidence 555555
No 259
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1e-13 Score=122.71 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=62.0
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccccccc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQH 230 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~ 230 (320)
.++|||||||+++|+++|+++|++ ||.|..|+|++|+ ++.+||||||+|.+.++|.+||+.....+.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 479999999999999999999999 9999999999996 6999999999999999999999865445543
No 260
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=107.18 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=54.8
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++.++|||+|||..+|+++|+++|++ ||.|..+.|.++ ||||||+|.+.++|.+|++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG------DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence 346689999999999999999999999 999999999876 79999999999999999984
No 261
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=2.1e-14 Score=121.43 Aligned_cols=63 Identities=13% Similarity=-0.050 Sum_probs=52.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
.....+|||+|||+++||++|+++|++||. ..+.+.++. .+++||||||+|+++++|++||+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi-~~v~i~~d~---~g~srGfaFV~F~~~e~A~~Al~~ 105 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNP-VRVHIEIGP---DGRVTGEADVEFATHEEAVAAMSK 105 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCC-SEEECCCSS---SSCSSCCCEEECSHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEECC---CCCCceEEEEEeCCHHHHHHHHhh
Confidence 345679999999999999999999999994 444554543 389999999999999999999943
No 262
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=114.79 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHH----HHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEIT----ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~----~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||||||+++++++|+ ++|++||+|..+.+.+ ++++||||||+|++.++|++||+..++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-----~~~~rG~aFV~F~~~~~A~~Ai~~lng 94 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-----SDDNSGKAYIVFATQESAQAFVEAFQG 94 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-----CCSSCCCEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-----CCCcCCEEEEEECCHHHHHHHHHHHCC
Confidence 457799999999999999876 7999999998655432 478999999999999999999988765
No 263
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=114.96 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCCCeEEEcCCCccchHHHHH----HHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELA----MIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~----~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+.+|+++|+ ++|++ ||.|..|.|+. ++.+||||||+|.+.++|.+||+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHH
Confidence 4567899999999999999876 69999 99999988753 688999999999999999999975
No 264
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.6e-14 Score=109.91 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=55.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
++|||||||+++|+++|+++|++||+|..+...++. .+++++|||||+|++++ |++|+...+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~g~afV~f~~~~-a~~a~~~l~g 64 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR--ETKKPKGFGFVEMQEES-VSEAIAKLDN 64 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS--SSCCCCEEEEEEECTTH-HHHHHHTSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC--CCCCcceEEEEEECCHH-HHHHHHHhCC
Confidence 379999999999999999999999999876665543 46899999999999999 9999987654
No 265
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.46 E-value=1.1e-13 Score=115.55 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=58.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+.+.++. .+++++|||||+|+++++|++||+..+.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~g~~~G~afV~F~~~~~A~~Ai~~l~g 111 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR--YTKESRGFAFVRFHDKRDAEDAMDAMDG 111 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS--SSSSCCSCCEEECSCHHHHHHHHTTTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 346799999999999999999999999999866555543 4689999999999999999999987654
No 266
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=111.36 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEe-cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVD-WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~-~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||.|..+ ...+. .+++++|||||+|.+.++|++||+..+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM---MTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE---ECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc---CCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 4567899999999999999999999999998522 11111 1578999999999999999999987654
No 267
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=2e-14 Score=113.05 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=55.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+++|+++|+++|++||.|.. ..+.+. .+++++|||||.|+++++|++||+ .+.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~--~~g~~~g~afV~f~~~~~a~~A~~-l~g 79 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV--RTGTNRKFGYVDFESAEDLEKALE-LTG 79 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE--EEETTTTEEEEEESSHHHHHHHHH-GGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC--CCCCcCcEEEEEECCHHHHHHHHh-cCC
Confidence 345679999999999999999999999999976 233322 358999999999999999999998 543
No 268
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=110.95 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=58.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..++.+|||+|||+++|+++|+++|++||+|..+.+.++. +++++|||||+|+++++|++||+..+.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g 98 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---SGRSLGTADVHFERRADALKAMKQYKG 98 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS---SSSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC---CCCEeeEEEEEECCHHHHHHHHHHcCC
Confidence 3456799999999999999999999999999876665542 589999999999999999999986554
No 269
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=107.18 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=58.1
Q ss_pred CCCcEEEcCCCCCCCHHHHH----HHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEE
Q psy11409 52 PSPPQFPLQGTPHYDHEEIT----ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYL 126 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~----~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~v 126 (320)
+..+|||||||+++|+++|+ ++|++||+|..+.+..+.. + ||||||+|+++++|++||+..++. .++..|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~---~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD---Y--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS---T--TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC---C--CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 35699999999999999999 9999999999776665432 2 899999999999999999976643 233444
Q ss_pred Ee
Q psy11409 127 CV 128 (320)
Q Consensus 127 ki 128 (320)
++
T Consensus 83 ~V 84 (96)
T 2dgx_A 83 LV 84 (96)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 270
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=110.16 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+.++. +++++|||||+|.++++|++||+..+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS---SGTSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS---SSCEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999999976666543 589999999999999999999987654
No 271
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.8e-13 Score=107.41 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=60.7
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCcc-ceEEEe
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEI-DKRVEV 239 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~-~k~v~i 239 (320)
+..||||||++.+|+++|+++|.+ ||+|.++.|.. +||||||+|.++++|.+||+. +++.++ .+.|++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~----Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL------NQGIALCKYTTREEANKAQMA----LNNCVLANTTIFA 75 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET------TTTEEEEEESSHHHHHHHHHH----HTTEEETTEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHH----hcCCEECCcEEEE
Confidence 468999999999999999999999 99999999976 699999999999999999985 333333 456777
Q ss_pred ccc
Q psy11409 240 KPY 242 (320)
Q Consensus 240 kpy 242 (320)
+-+
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 655
No 272
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=108.46 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=59.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEEEec
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v~ik 240 (320)
.+|||||||..+|+++|+++|++ ||.|..+.|+.| ++|||||+|.+.++|.+|++. .-..+.+ ++|.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEE
Confidence 48999999999999999999999 999999999999 799999999999999999984 2233443 344555
Q ss_pred cc
Q psy11409 241 PY 242 (320)
Q Consensus 241 py 242 (320)
..
T Consensus 71 ~a 72 (101)
T 2hvz_A 71 LS 72 (101)
T ss_dssp ES
T ss_pred Ec
Confidence 44
No 273
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=1.5e-13 Score=105.83 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhc-ccccccCccceEEE
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISAR-FVQLQHGEIDKRVE 238 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~-~~~i~~~~~~k~v~ 238 (320)
..++|||||||+.+|+++|+++|++ | .|..+.|+ .+||||||+|.+.++|.+|++.- -..+. .++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEE
Confidence 4589999999999999999999999 9 99999995 68999999999999999999842 22232 35666
Q ss_pred eccc
Q psy11409 239 VKPY 242 (320)
Q Consensus 239 ikpy 242 (320)
|...
T Consensus 72 V~~a 75 (88)
T 1wg1_A 72 VQLQ 75 (88)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=2e-13 Score=109.72 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=53.5
Q ss_pred cCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 48 KLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 48 ~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
....+..+|||||||+++|+++|+++|++||+|..+... +|||||+|.+.++|++|++..++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----------kg~afV~f~~~~~A~~Ai~~l~g 87 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----------NGFAFVEFEEAESAAKAIEEVHG 87 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----------TTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----------CCEEEEEECCHHHHHHHHHHcCC
Confidence 445678899999999999999999999999999865442 79999999999999999987554
No 275
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=113.18 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=54.2
Q ss_pred CCCCCeEEE--cCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFV--GGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFV--GnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+|.++||| ||||+.+|+++|+++|++ ||.|..|.|+.+ ||||||+|.+.++|.+|++.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPPN------KPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCTT------CSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence 356789999 889999999999999999 999999998764 79999999999999999975
No 276
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2.2e-13 Score=119.30 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+.++|||+|||.++|+++|+++|++ ||.|..+.|+.|+.++.++|||||+|.+.++|.+|++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 3589999999999999999999999 99999999999999999999999999999999999984
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=104.77 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEe
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEV 239 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~i 239 (320)
..++|||||||+.+|+++|+++|++ ||.|..| +.|+.++. ||||+|.+.++|.+||+..-+.+. .+.|.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~----g~~l~V 76 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLG----GHRLRV 76 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEET----TEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEEC----CEEEEE
Confidence 4579999999999999999999999 9999986 77877776 999999999999999984334444 356666
Q ss_pred cccc
Q psy11409 240 KPYV 243 (320)
Q Consensus 240 kpy~ 243 (320)
++..
T Consensus 77 ~~a~ 80 (94)
T 2e5g_A 77 RPRE 80 (94)
T ss_dssp BCSC
T ss_pred EECC
Confidence 6663
No 278
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=106.13 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++|+.|.+. ++ ..+++++|||||+|+++++|++||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~---~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIV---TD--RETGSSKGFGFVDFNSEEDAKAAKEAMED 76 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEE---EC--SSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEE---ec--CCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 4567899999999999999999999999766642 22 23688999999999999999999987554
No 279
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=3.9e-13 Score=106.29 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=60.4
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||+|||+.+|+++|+++|++ ||.|..+.|+ ||||||+|.+.++|.+||+. .-..+. .+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLE----GEN 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccC----CCE
Confidence 346789999999999999999999999 9999999987 56999999999999999985 333343 346
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|....
T Consensus 75 l~v~~a~ 81 (103)
T 2dgu_A 75 IEIVFAK 81 (103)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 6666553
No 280
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=1.3e-13 Score=125.14 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=57.5
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCC--CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFG--PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG--~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+|||||||+++||++|+++|++|| +|..+.++++. .++++||||||+|+++++|++||+..+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~--~tg~skGfaFV~f~~~~~a~~Ai~~lng 134 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR--ANGQSKGFALVGVGSEASSKKLMDLLPK 134 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT--TTCCEEEEEEEEESCTTHHHHHHTTSTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC--CCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 456899999999999999999999999 89877666653 4799999999999999999999987654
No 281
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=105.32 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=53.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...++|||||||+.+|+++|+++|++ ||.|. +.|+++ .++|||||+|.+.++|.+||+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHH
Confidence 34689999999999999999999999 99997 777765 6899999999999999999975
No 282
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=8.9e-14 Score=108.18 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=55.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|... + .+++++|||||+|.++++|++||+..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~----~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---S----QDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---E----ETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---C----CCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3456799999999999999999999999999854 1 3478999999999999999999997664
No 283
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=103.29 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=52.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+... ||||||+|.++++|++||+..++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----------~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----------KNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----------CCEEEEEECCHHHHHHHHHHhcC
Confidence 456799999999999999999999999999865442 68999999999999999987654
No 284
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=106.40 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
....+|||||||+++|+++|+++|++||.|.+.++ +++++|||||+|.++++|++||+..+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g 78 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLT-------WQGPRRRAFLHYPDSAAAQQAVSCLQG 78 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEE-------EETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEE-------cCCCCcEEEEEECCHHHHHHHHHHhCC
Confidence 34679999999999999999999999999963222 247899999999999999999987654
No 285
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.44 E-value=6.8e-14 Score=108.91 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=56.5
Q ss_pred CCCCeEEEcCCCccchHHHHH----HHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELA----MIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~----~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||..+|+++|+ ++|++ ||.|..+.|.. ++.++|||||+|.+.++|.+|++.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHH
Confidence 467899999999999999999 99999 99999999873 688999999999999999999974
No 286
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=9.3e-14 Score=113.54 Aligned_cols=59 Identities=8% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCCCeEEEcCCCcc-chHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRP-LKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~-~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||++ +|+++|+++|++ ||.|.+|.|+.+ ||||||+|.+.++|.+||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMRM------KSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEETT------TTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEecC------CCEEEEEECCHHHHHHHHHH
Confidence 456789999999998 999999999999 999999999754 79999999999999999984
No 287
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=6.4e-13 Score=106.18 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=53.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+.+.++ |||||+|+++++|++||+..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---------TEEEEEESSHHHHHHHHHHSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---------CEEEEEECCHHHHHHHHHHHCc
Confidence 34679999999999999999999999999997655432 9999999999999999997764
No 288
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=1.4e-13 Score=107.06 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=55.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHH----HHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEIT----ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~----~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++++|||||||+++|+++|+ ++|++||+|..+...+ +++++|||||.|.++++|++|++..++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-----SLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-----HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-----CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 457899999999999999999 9999999999755533 367899999999999999999987554
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.1e-13 Score=106.20 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..++|||||||..+|+++|+++|++ ||.|.++.|. .+||||||+|.+.++|.+||+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999 9999999998 4589999999999999999974
No 290
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.6e-13 Score=104.70 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=52.2
Q ss_pred CCCCCeEEEcCCCc-cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPR-PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~-~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++.++|||||||+ .+|+++|+++|++ ||.|..+.|. ||||||+|.+.++|.+||+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK--------NAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE--------TTEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHH
Confidence 35678999999998 9999999999999 9999999993 89999999999999999985
No 291
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.2e-13 Score=107.81 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||||||..+|+++|+++|++ ||.|..|.|+.| ||||||+|.+.++|.+||+. .-..+. .++|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 91 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVV 91 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 35689999999999999999999999 999999999998 79999999999999999964 223343 2455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 92 ~v~~a 96 (109)
T 1x4g_A 92 KCYWG 96 (109)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 66555
No 292
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=5.9e-13 Score=103.95 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+...+ .+|||||+|+++++|++||+..+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK--------GDSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS--------SSCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC--------CCCEEEEEECCHHHHHHHHHHHCC
Confidence 34568999999999999999999999999999765432 279999999999999999986553
No 293
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-13 Score=107.46 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||||||..+|+++|+++|++ ||.|..+ ..++.++|||||+|.+.++|.+||+. .-..+. .+.|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 83 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSV 83 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 35689999999999999999999999 9988766 46899999999999999999999984 223343 3466
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 84 ~v~~a 88 (96)
T 1fjc_A 84 SLYYT 88 (96)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66655
No 294
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.42 E-value=5e-13 Score=105.13 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCCCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.-++++|||||||+ ++|+++|+++|++||.|..+.+ ++|||||+|+++++|++||+..++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----------~~g~afV~f~~~~~A~~Ai~~l~g 79 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----------KNAFGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----------CSSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 44678999999999 9999999999999999996533 379999999999999999997654
No 295
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.2e-13 Score=113.91 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=56.2
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+||||||||.++|+++|+++|++ ||.|.++.|+.|+ ++.++|+|||+|.+.++|.+|++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~ 60 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQT 60 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999999 9999999999997 688999999999999999999954
No 296
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.42 E-value=2.2e-13 Score=110.43 Aligned_cols=75 Identities=27% Similarity=0.383 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccc-eEE
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEID-KRV 237 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~-k~v 237 (320)
...+|||+|||+++|+++|+++|++ ||.|..|.|+.| |||||+|.+.++|.+||+. .-.+|.+..+. ..|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 3589999999999999999999999 999999999988 9999999999999999984 33445544332 234
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
++++.
T Consensus 87 ~v~~~ 91 (115)
T 3beg_B 87 RVKVD 91 (115)
T ss_dssp EEEEC
T ss_pred EeccC
Confidence 55554
No 297
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3.5e-13 Score=105.63 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=53.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||+|..+.+. ++||||||+|.++++|++||+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~~kg~afV~f~~~~~a~~a~~~l~g 73 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH--------KDKGFGFIRLETRTLAEIAKVELDN 73 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE--------TTTTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe--------cCCCEEEEEECCHHHHHHHHHHhCC
Confidence 456799999999999999999999999999866553 3589999999999999999987654
No 298
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=2.2e-13 Score=103.77 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=51.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccC----C-------CeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRF----G-------PLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~F----G-------~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||||||+++|+++|+++|++| | +|..+... ++||||||+|.++++|++|| ..+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--------~~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--------QDKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--------SSSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec--------CCCcEEEEEcCCHHHHHHHH-hcCC
Confidence 346799999999999999999999999 8 88865443 35899999999999999999 5543
No 299
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.7e-13 Score=101.60 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=52.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
.+.++|||+|||+++|+++|+++|++||+|..+...+ +||||||.|.+.++|++|++..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--------~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--------RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--------GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--------CCCEEEEEECCHHHHHHHHHHh
Confidence 4467999999999999999999999999998655533 5899999999999999999865
No 300
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=103.88 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEE-EEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYA-GIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v-~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
...++|||||||+.+|+++|+++|++ ||.|..+ .|+.|+.++. |||+|.+.++|.+||+. .-..+.+ +.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g----~~ 83 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN----FT 83 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS----CB
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC----cE
Confidence 34589999999999999999999999 9999999 5999987655 99999999999999974 2233432 45
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|+.+.
T Consensus 84 l~V~~a~ 90 (96)
T 2e44_A 84 LKVAYIP 90 (96)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 5555553
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=5.2e-13 Score=105.04 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=52.9
Q ss_pred CCCCCeEEEcCCCc-cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPR-PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~-~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+ .+|+++|+++|++ ||.|..+.| +||||||+|.+.++|.+||+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI--------KNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE--------CSSEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE--------eCCEEEEEECCHHHHHHHHHH
Confidence 34678999999998 9999999999999 999999999 389999999999999999985
No 302
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=111.59 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=53.8
Q ss_pred CCCCCcEEE--cCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFP--LQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFV--GgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..|.++||| ||||+++||++|+++|++||+|..+++. .+||||||+|+++++|++|++..+.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~--------~~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--------PNKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC--------TTCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCC
Confidence 346779999 8899999999999999999999865542 2479999999999999999998765
No 303
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.5e-13 Score=105.33 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCCCCcEEEcCCCC-CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTP-HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~-dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+ ++|+++|+++|++||+|..+.+ ++|||||+|+++++|++||+..++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~g 67 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----------KNAFGFIQFDNPQSVRDAIECESQ 67 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE----------ETTEEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 34577999999999 9999999999999999986544 379999999999999999997554
No 304
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.5e-13 Score=101.81 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=60.5
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||||+.+|+++|+++|++ ||.|..+.|+. |||||+|.+.++|.+||+. .-..+. .++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQ----GKR 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeC----CcE
Confidence 345689999999999999999999999 99999999984 4999999999999999974 223343 356
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|....
T Consensus 74 l~V~~a~ 80 (92)
T 2dgt_A 74 MHVQLST 80 (92)
T ss_dssp EEEEESS
T ss_pred EEEEEcc
Confidence 7776664
No 305
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.41 E-value=3.3e-13 Score=115.85 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+.+..+. .+|.++|||||.|.+.++|++||+.++.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR--RTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC--CCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 345689999999999999999999999999976665543 4689999999999999999999987654
No 306
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=4e-13 Score=102.31 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhC----C-------CeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccccc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLY----G-------GVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQL 228 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~f----G-------~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i 228 (320)
+.++|||||||+.+|+++|+++|++ | | .|.++.|..| ||||||+|.+.++|.+|+...-..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 4589999999999999999999999 9 8 9999999876 7999999999999999994333334
Q ss_pred c
Q psy11409 229 Q 229 (320)
Q Consensus 229 ~ 229 (320)
.
T Consensus 78 ~ 78 (87)
T 2hzc_A 78 Q 78 (87)
T ss_dssp T
T ss_pred C
Confidence 3
No 307
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-12 Score=101.68 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhC--CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccc
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLY--GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEID 234 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~f--G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~ 234 (320)
..+.++|||||||+.+|+++|+++|++ | |.|..+.+. ||||||+|.+.++|.+||+. .-..+. .
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g 78 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD----G 78 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET----T
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC----C
Confidence 345689999999999999999999999 9 999999864 78999999999999999984 223343 3
Q ss_pred eEEEecccc
Q psy11409 235 KRVEVKPYV 243 (320)
Q Consensus 235 k~v~ikpy~ 243 (320)
++|.|....
T Consensus 79 ~~l~v~~a~ 87 (99)
T 2cpd_A 79 SPIEVTLAK 87 (99)
T ss_dssp EEEEEECCC
T ss_pred cEEEEEECC
Confidence 567776663
No 308
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=4.1e-13 Score=118.85 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=57.0
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
.++|||||||+++|+++|+++|++||+|..+.+.++. +++++|||||+|+++++|++||+...+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~~~~kG~aFVeF~~~e~A~~A~~~~~~~ 173 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---HKAFKGSIFVVFDSIESAKKFVETPGQK 173 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT---TCCEEEEEEEEESSHHHHHHHHHCTTCE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC---CCCcccEEEEEECCHHHHHHHHHhCCCe
Confidence 4789999999999999999999999999976665543 4889999999999999999999876544
No 309
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.7e-13 Score=105.77 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+|||||||+++|+++|+++|++||.|..+... +++|||||.|.+.++|++|++..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--------~~~g~afV~f~~~~~A~~Ai~~l~g 85 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--------PEKGCCFIKYDTHEQAAVCIVALAN 85 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--------TTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--------cCCCEEEEEECCHHHHHHHHHHhCC
Confidence 36799999999999999999999999999865442 4789999999999999999987553
No 310
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8e-13 Score=105.51 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=53.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+++|+++|+++|++||+|..+.+.+ .+|||||+|++.++|++||+..+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~--------~~g~afV~f~~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--------EKGYSFVRFSTHESAAHAIVSVNG 83 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC--------CCCEEEEEECCHHHHHHHHHHcCC
Confidence 34577999999999999999999999999998765543 279999999999999999987654
No 311
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=104.32 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCC-eEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGP-LVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~-V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||||||+++|+++|+++|++||. |..++. .++|||||.|+++++|++||+..+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---------LKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---------EETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---------cCCCEEEEEECCHHHHHHHHHHccC
Confidence 45679999999999999999999999999 443322 3589999999999999999987664
No 312
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.40 E-value=6.9e-13 Score=111.70 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=55.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+++|+++|+++|++||+|..+.+.++ ++|||||.|.++++|++||+..+.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g 132 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-------PPGFAFVEFEDPRDAADAVRELDG 132 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-------SCSEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-------CCcEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999999999999999999999997655442 689999999999999999987654
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=5.9e-14 Score=117.40 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=56.6
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEE--EEecC---CCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYA--GIDTD---PELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v--~I~~D---~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+..+|||||||+.+|+++|+++|++ ||.|..+ .++.| ..++.++|||||+|.+.++|.+||+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence 456789999999999999999999999 9999886 22333 35899999999999999999999985
No 314
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=1.5e-12 Score=104.04 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCCCcEEEcCCCCC-CCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPH-YDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~d-vtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||++ +|+++|+++|++||+|..+.+ ++|||||+|+++++|++||+..+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----------HKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----------ETTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 34579999999999 999999999999999986544 579999999999999999977554
No 315
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.38 E-value=5.9e-13 Score=104.46 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=53.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..||||||++.+||++|+++|.+||+|..+.. ..+||||||+|.++++|++|++..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l--------~~~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP--------YLNQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE--------ETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE--------cCCCcEEEEEECCHHHHHHHHHHhcC
Confidence 4779999999999999999999999999997544 23899999999999999999998764
No 316
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=100.57 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+.++|||+|||+++|+++|+++|++||+|..+.+. +|||||+|.++++|++||+..+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----------~~~afV~f~~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----------KDYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----------SSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----------CCEEEEEECCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999999875543 45999999999999999987654
No 317
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=4e-14 Score=114.35 Aligned_cols=67 Identities=18% Similarity=0.049 Sum_probs=57.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEE--------ecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVV--------DWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v--------~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||+|||+++|+++|+++|++||.|.. +.+..+. .+++++|||||+|.++++|++||+..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR--ETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 45789999999999999999999999999986 4454442 4689999999999999999999986554
No 318
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.9e-12 Score=100.32 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccC--CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEE
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRF--GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYL 126 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~F--G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~v 126 (320)
..+.++|||+|||+++|+++|+++|++| |.|..+. .++|||||+|.+.++|++||+..+.. .++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK----------KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE----------ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE----------EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4467899999999999999999999999 8887542 24789999999999999999966542 333444
Q ss_pred Ee
Q psy11409 127 CV 128 (320)
Q Consensus 127 ki 128 (320)
++
T Consensus 82 ~v 83 (99)
T 2cpd_A 82 EV 83 (99)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 319
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.37 E-value=8.4e-13 Score=106.06 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||||||+.+|+++|+++|++ ||.|..+.|. ||||||+|.+.++|.+|++. .-..+. .+.|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 95 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPL 95 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 45689999999999999999999999 9999999998 79999999999999999974 223333 2455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 96 ~V~~a 100 (108)
T 2jvo_A 96 EVVYS 100 (108)
T ss_dssp EEESC
T ss_pred EEEEe
Confidence 55554
No 320
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.4e-12 Score=110.19 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=74.9
Q ss_pred CccCCCCcchhhHHHHHHhhhhcCCCC----CCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCC
Q psy11409 15 YISAGLDDASLLDDFLLLLSRALVPNL----GPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAES 90 (320)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~p~~----~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~ 90 (320)
|+-+-..++..++..+ ..++..+... ..........+..+|||+|||+++|+++|+++|++||+|..+...++.
T Consensus 53 ~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~- 130 (172)
T 2g4b_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS- 130 (172)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT-
T ss_pred EEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC-
Confidence 4444456777778877 5555444321 111111223446899999999999999999999999999976665543
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 91 KSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 91 ~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+|+++|||||.|.++++|++|++..++
T Consensus 131 -~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (172)
T 2g4b_A 131 -ATGLSKGYAFCEYVDINVTDQAIAGLNG 158 (172)
T ss_dssp -TTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred -CCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 3689999999999999999999987554
No 321
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.37 E-value=1.2e-12 Score=103.33 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.++|||+|||+++|+++|+++|++||+|..+.+ .+|||||+|.++++|++||+..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~----------~~~~afV~f~~~~~a~~A~~~l~g 67 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK----------LKDYAFIHFDERDGAVKAMEEMNG 67 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE----------CSSCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE----------ECCEEEEEeCCHHHHHHHHHHHCC
Confidence 4679999999999999999999999999996543 257999999999999999997554
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.37 E-value=1.2e-12 Score=104.64 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=52.3
Q ss_pred CCCCeEEEcCCCcc-chHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRP-LKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~-~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||||+. +|+++|+++|++ ||.|..+.| ++|||||+|.+.++|.+||+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV--------HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE--------ETTEEEEECSSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE--------eCCEEEEEECCHHHHHHHHHH
Confidence 34589999999999 999999999999 999999999 689999999999999999964
No 323
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.1e-13 Score=103.39 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc--cccccCccce
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF--VQLQHGEIDK 235 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~--~~i~~~~~~k 235 (320)
.+.++|||||||+++|+++|+++|++ ||. |..+.+ .++|||||+|.+.++|.+||+.-. ..+.+ +
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHG----K 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETT----E
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECC----E
Confidence 45689999999999999999999999 999 666665 358999999999999999997532 33433 4
Q ss_pred EEEecccc
Q psy11409 236 RVEVKPYV 243 (320)
Q Consensus 236 ~v~ikpy~ 243 (320)
+|.|....
T Consensus 74 ~l~v~~a~ 81 (93)
T 2cqh_A 74 IMEVDYSV 81 (93)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcc
Confidence 56666553
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=113.07 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEec--cccc-CCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDW--PHKA-ESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~--p~k~-~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||||+++|+++|+++|++||.|..+. ++.+ ....+++++|||||.|.+.++|++||+..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 45678999999999999999999999999987431 1111 0013589999999999999999999997654
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.36 E-value=8.5e-13 Score=101.52 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=55.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV 128 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki 128 (320)
.++.+|||||||+++|+++|+++|++| +|..+... +++|||||+|.++++|++|++..+.. .++..+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 357899999999999999999999999 88754331 57899999999999999999976542 23333444
No 326
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=100.21 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKRV 237 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~v 237 (320)
.+.++|||||||+.+|+++|+++|++ ||.|..+.|+. |||||+|.+.++|.+||+. .-..+. .++|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVK----GKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEEC----CcEE
Confidence 45689999999999999999999999 99999999984 4999999999999999984 223333 3455
Q ss_pred Eeccc
Q psy11409 238 EVKPY 242 (320)
Q Consensus 238 ~ikpy 242 (320)
.|...
T Consensus 74 ~v~~a 78 (90)
T 2dnp_A 74 NVELS 78 (90)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 66555
No 327
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.3e-12 Score=105.40 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=52.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++|||+|||+++|+++|+++|++||+|..+.+. +++|||||+|.+.++|++||+..+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~--------~~~g~afV~f~~~~~A~~Ai~~l~g 68 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP--------EGGITAIVEFLEPLEARKAFRHLAY 68 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC--------SSSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe--------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 5699999999999999999999999999865442 3789999999999999999987654
No 328
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.35 E-value=2.4e-12 Score=127.37 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki 128 (320)
..+..+|||||||+++|+++|.++|++||+|..+.++.+. .++.++|||||+|.++++|++||+.++.. .++..|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~--~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK--RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC--CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456799999999999999999999999999977666543 46899999999999999999999887653 34444444
No 329
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1e-12 Score=110.16 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=52.9
Q ss_pred CcEEEcCC----CCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCC-----HHH---HHHHHHhCc
Q psy11409 54 PPQFPLQG----TPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD-----ESS---VQQLIDACI 118 (320)
Q Consensus 54 ~kvFVGgL----p~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~-----ees---v~kaL~~~~ 118 (320)
.+|||||| ||+++|++|+++|++||+|..+....|. .||+|+|||||.|.| .++ |.+|+..|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp--~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP--NSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT--TTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 58999999 9999999999999999999976666654 689999999999996 333 788887543
No 330
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=100.58 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=50.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..++|||||||+++|+++|+++|++||+|..+ +. +. .+++ ||||+|.++++|++||+ .+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~--~~g~---~afV~f~~~~~a~~ai~-l~ 65 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DK--DKGV---FAIVEMGDVGAREAVLS-QS 65 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CS--SSCC---EEEEEESSHHHHHHHHT-CS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cC--CCCc---EEEEEECCHHHHHHHHh-cC
Confidence 46799999999999999999999999999965 22 21 2344 99999999999999998 54
No 331
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=105.84 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|||+|||+.+|+++|+++|++ ||.|..|.|+. +||||||+|.+.++|.+||+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE------GGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS------SSSCEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999999 99999999875 579999999999999999975
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=9.5e-13 Score=106.68 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=51.1
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...+|||+|||+++|+++|+++|++||+|..+.+.++ |||||+|+++++|++||+..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDN 73 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---------SEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---------CEEEEEECCHHHHHHHHHHhCC
Confidence 3679999999999999999999999999997655331 9999999999999999997654
No 333
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=99.30 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=52.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||+|||+++|+++|+++|++||+|..+.+. +|||||+|+++++|++||+..+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----------~~~afV~f~~~~~a~~A~~~l~g 66 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----------KDYAFVHMERAEDAVEAIRGLDN 66 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----------SSEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----------CCEEEEEECCHHHHHHHHHHhCC
Confidence 3456799999999999999999999999999865442 45999999999999999987554
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=7.7e-12 Score=97.70 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=59.3
Q ss_pred CCCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh-cccccccCccceE
Q psy11409 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA-RFVQLQHGEIDKR 236 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~-~~~~i~~~~~~k~ 236 (320)
..+.++|||||| ++|+++|+++|++ ||.|..|.|. .+||||||+|.+.++|.+||+. .-..+. .++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~ 78 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQ 78 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 345689999996 8999999999999 9999999994 5689999999999999999975 223333 356
Q ss_pred EEecccc
Q psy11409 237 VEVKPYV 243 (320)
Q Consensus 237 v~ikpy~ 243 (320)
|.|....
T Consensus 79 l~v~~a~ 85 (97)
T 1x5p_A 79 LKVNIAR 85 (97)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 6666553
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.8e-12 Score=113.22 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=57.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++.+|||+|||+++|+++|+++|++||+|..+.+..+. +++++|||||+|+++++|++||+..+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~g~~kG~afV~F~~~~~A~~Ai~~lng 151 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---SGRSLGTADVHFERRADALKAMKQYKG 151 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT---TSSCSCCEEEEESCHHHHHHHHHHSTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCEeeEEEEEeCCHHHHHHHHHHhCC
Confidence 346799999999999999999999999999876655542 589999999999999999999997664
No 336
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1e-11 Score=97.01 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=55.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC-CCceEEEe
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD-EDKCYLCV 128 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~-~~~~~vki 128 (320)
..+..+|||+|| ++|+++|+++|++||+|..+.+ ++++|||||+|.+.++|++||+..+.. .++..|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i--------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE--------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe--------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345789999995 9999999999999999986544 257899999999999999999876542 23344444
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.30 E-value=1.2e-11 Score=107.38 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=53.6
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
.+|||+|||+++|+++|+++|++||+|..+++.. .+++|||||+|+++++|++|++..+..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~------k~~rgfAFVeF~d~~~A~~Ai~~LnG~ 107 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT------KNNQFQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE------SSSCEEEEEEESCHHHHHHHHHHSTTB
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe------CCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3899999999999999999999999999766543 236899999999999999999988763
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9e-12 Score=96.71 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=52.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEe-cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVD-WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~-~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||||||+++|+++|+++|++||+|..+ .+..+ +..|.|||+|.++++|++||+..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~------~~~~~afV~f~~~~~a~~Ai~~l~g 76 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD------SETAVVNVTYSSKDQARQALDKLNG 76 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS------SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC------CCCCEEEEEECCHHHHHHHHHHhCC
Confidence 346799999999999999999999999999976 34443 2334599999999999999986654
No 339
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.30 E-value=7.6e-13 Score=112.54 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEE
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVE 238 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ 238 (320)
.+.++|||||||+.+|+++|+++|++ ||.|.. .++.|..++.+||||||+|.+.++|.+||+..-..+. .+.|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~----g~~l~ 84 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF----GNEIK 84 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEET----TEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeC----CeEEE
Confidence 45689999999999999999999999 998877 5667778999999999999999999999963333343 35667
Q ss_pred ecccc
Q psy11409 239 VKPYV 243 (320)
Q Consensus 239 ikpy~ 243 (320)
|....
T Consensus 85 v~~~~ 89 (175)
T 1fje_B 85 LEKPK 89 (175)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 76664
No 340
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.29 E-value=4.5e-12 Score=112.96 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=54.6
Q ss_pred CCCeEEEcCCC-ccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 160 PRKTVFVGGVP-RPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 160 ~~~tVFVGnLp-~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
++.+||||||| +.+|+++|+++|++ ||.|.+|.|+.|+ ||||||+|.+.++|.+||+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~ 61 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITH 61 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHH
Confidence 46899999999 89999999999999 9999999999884 89999999999999999974
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.28 E-value=7.1e-12 Score=108.22 Aligned_cols=67 Identities=21% Similarity=0.144 Sum_probs=58.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+..+|||+|||+++|+++|+++|++||+|..+...++. .+++++|||||.|.+.++|++||+..+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g 178 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS--ATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT--TTCSEEEEEEEEESSSSHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC--CCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 456899999999999999999999999999866665543 3689999999999999999999987554
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.28 E-value=1.3e-11 Score=107.15 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=52.9
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+|||||||+.+|+++|+++|++ ||.|..|.|..+ .++|||||+|.+.++|.+|++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHH
T ss_pred EEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHH
Confidence 67999999999999999999999 999999999755 2689999999999999999985
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.27 E-value=1.5e-11 Score=98.87 Aligned_cols=79 Identities=20% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCc-----cchHHHHHHHHhhhCCCeeEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHhcccccccCc
Q psy11409 159 DPRKTVFVGGVPR-----PLKALELAMIMDRLYGGVCYAGIDTDPEL-KYPKGAGRVAFASQASYIAAISARFVQLQHGE 232 (320)
Q Consensus 159 ~~~~tVFVGnLp~-----~~TeedL~~~F~~~fG~V~~v~I~~D~~t-g~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~ 232 (320)
.++++|+|.||.. +-++++|++.|++ ||.|..|.|++|+++ +.++|||||+|.+.++|.+|++. +++..
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~----lnG~~ 80 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVD----LNGRY 80 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHH----HTTCE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHH----HCCCE
Confidence 3678999999973 2378999999999 999999999999765 68999999999999999999975 33444
Q ss_pred c-ceEEEeccc
Q psy11409 233 I-DKRVEVKPY 242 (320)
Q Consensus 233 ~-~k~v~ikpy 242 (320)
+ .+.|.+.-+
T Consensus 81 ~~Gr~i~v~~a 91 (105)
T 2pe8_A 81 FGGRVVKACFY 91 (105)
T ss_dssp ETTEECEEEEC
T ss_pred ECCcEEEEEEc
Confidence 4 245555544
No 344
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=1e-11 Score=113.91 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=56.6
Q ss_pred CCCCCeEEEcCCCccchHHHHH----HHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPRPLKALELA----MIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~~TeedL~----~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+++|+++|+ ++|++ ||.|..|.|+. ++.+||||||+|.+.++|.+||+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHH
Confidence 3567999999999999999966 99999 99999999886 678999999999999999999964
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=97.96 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCCe-EEEcCCCccchHHH----HHHHHhhhC-CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCc
Q psy11409 159 DPRKT-VFVGGVPRPLKALE----LAMIMDRLY-GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGE 232 (320)
Q Consensus 159 ~~~~t-VFVGnLp~~~Teed----L~~~F~~~f-G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~ 232 (320)
.|..| |||+|||+.+++++ |+++|++ | |+|..| |+ |+|||+|.+.++|.+|++. +++.+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~----l~G~~ 70 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSI-------TG---CSAILRFINQDSAERAQKR----MENED 70 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEEC-------CT---TCEEEEESSHHHHHHHHHH----HTTCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEE-------ec---CEEEEEECCHHHHHHHHHH----hcCCc
Confidence 45666 99999999999998 5589999 9 599998 44 9999999999999999975 33333
Q ss_pred c-ceEEEeccc
Q psy11409 233 I-DKRVEVKPY 242 (320)
Q Consensus 233 ~-~k~v~ikpy 242 (320)
+ .+.|+|.=+
T Consensus 71 l~gr~i~v~~A 81 (96)
T 2diu_A 71 VFGNRIIVSFT 81 (96)
T ss_dssp SSSSCCEEESS
T ss_pred cCCceEEEEec
Confidence 3 345555433
No 346
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.25 E-value=1e-11 Score=111.45 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCCCCeEEEcCCCc-cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 158 LDPRKTVFVGGVPR-PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 158 ~~~~~tVFVGnLp~-~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..+.++|||||||+ .+|+++|+++|++ ||.|..|.|+.|+ +|||||+|.+.++|.+||+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~ 91 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSH 91 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHH
Confidence 34678999999999 9999999999999 9999999999996 89999999999999999973
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.25 E-value=1.1e-11 Score=103.79 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=52.0
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA-GRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf-gfVtF~~~esa~kAi~~ 223 (320)
.+||||||++.+|+++|+++|++ ||.|..|.|..++ +|| |||+|.+.++|.+|++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999 9999999998653 788 99999999999999975
No 348
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.25 E-value=1.5e-11 Score=100.91 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=51.1
Q ss_pred CCCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.+.++|||||| ++|+++|+++|++ ||.|..|.|. .+||||||+|.+.++|.+||+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHH
Confidence 45689999996 6999999999999 9999999996 5689999999999999999964
No 349
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.24 E-value=2.3e-11 Score=101.88 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=56.2
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcce-EEEEeCCHHHHHHHHHhCccC---CCceEEEec
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGY-AFLLFQDESSVQQLIDACIVD---EDKCYLCVS 129 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGy-gFV~F~~eesv~kaL~~~~~~---~~~~~vkis 129 (320)
+|||+||++++|+++|+++|++||+|..+++.+ +++|| |||+|++.++|++|++..++. ++...++|.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 899999999999999999999999999765543 24688 999999999999999988764 233445554
No 350
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=8.3e-12 Score=114.26 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=78.0
Q ss_pred CccCCCCcchhhHHHHHHhhhhcCCCCCCCccccCCCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCC
Q psy11409 15 YISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYF 94 (320)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg 94 (320)
|+-+-..++..++..+..+++..... ..=......++.+|||+|||+++|+++|+++|++||+|..+.+..+. +|
T Consensus 60 ~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g 134 (261)
T 3sde_A 60 FGFIRLESRTLAEIAKAELDGTILKS--RPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD---RG 134 (261)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETT--EECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---TS
T ss_pred EEEEEECCHHHHHHHHHHcCCcEECC--ceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC---CC
Confidence 44455677788888888777765542 11112335567899999999999999999999999999876665553 58
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 95 PPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 95 ~skGygFV~F~~eesv~kaL~~~~ 118 (320)
+++|||||.|.+.++|.+||+.++
T Consensus 135 ~~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 135 RATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CcCcEEEEEeCCHHHHHHHHHHhc
Confidence 999999999999999999999874
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.5e-11 Score=112.83 Aligned_cols=58 Identities=28% Similarity=0.356 Sum_probs=53.6
Q ss_pred CCCCeEEEcCCCccc---------hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPL---------KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~---------TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
...+||||||||..+ |+++|+++|++ ||.|++|.|+.+ ||||||+|.+.++|++|+++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVES------KNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHH
Confidence 356899999999998 89999999999 999999999964 89999999999999999875
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=5.3e-11 Score=98.74 Aligned_cols=58 Identities=12% Similarity=-0.068 Sum_probs=50.5
Q ss_pred cEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcce-EEEEeCCHHHHHHHHHhCccC
Q psy11409 55 PQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGY-AFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 55 kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGy-gFV~F~~eesv~kaL~~~~~~ 120 (320)
+|||||||+++|+++|+++|++||.|..+++.+ + .|| |||+|+++++|++|++..++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-------~-~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-------R-NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-------S-SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------C-CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 678999999999999999999999999766643 1 286 999999999999999987653
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=3.4e-11 Score=99.88 Aligned_cols=55 Identities=20% Similarity=0.090 Sum_probs=49.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGA-GRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGf-gfVtF~~~esa~kAi~~ 223 (320)
..|||||||+.+|+++|+++|++ ||.|..|.|.. + .|| |||+|.+.++|.+|++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999 99999999964 2 297 99999999999999975
No 354
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.19 E-value=2.4e-11 Score=105.55 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=54.2
Q ss_pred CCeEEEcCCCc-cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPR-PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~-~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+++|||||||+ .+|+++|+++|++ ||.|..+.|+.|+ +|||||+|.+.++|.+|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHH
Confidence 57999999999 9999999999999 9999999999996 89999999999999999973
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.18 E-value=5e-11 Score=97.77 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=51.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
..+..+|||||| ++|+++|+++|++||+|..+... +++|||||+|++.++|++||+..+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--------~~kg~aFV~f~~~~~A~~Ai~~lng 95 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--------PPRNCAFVTYEKMESADQAVAELNG 95 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--------TTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCC
Confidence 456789999995 79999999999999999854332 5789999999999999999987554
No 356
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=5.2e-11 Score=114.64 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=52.8
Q ss_pred CCCCeEEEcC--CCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGG--VPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGn--Lp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.|.++||||| |++.+|+++|+++|++ ||.|..|.|+. .||||||+|.+.++|.+||++
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP------NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT------TCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHH
Confidence 5678999998 6899999999999999 99999988765 479999999999999999986
No 357
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.2e-10 Score=90.83 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=48.4
Q ss_pred CCCc-EEEcCCCCCCCHHH----HHHHhccC-CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 52 PSPP-QFPLQGTPHYDHEE----ITASFRRF-GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 52 ~~~k-vFVGgLp~dvtEe~----L~~~Fs~F-G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
|+.+ |||+|||+++++++ |+++|++| |+|..+ ++ |||||+|.+.++|++|++..+..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---------tg---G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---------TG---CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---------CT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---------ec---CEEEEEECCHHHHHHHHHHhcCC
Confidence 4556 89999999999988 55899999 599964 23 99999999999999999876653
No 358
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=8.4e-11 Score=113.22 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=55.8
Q ss_pred cCCCCCCcEEEcC--CCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 48 KLSFPSPPQFPLQ--GTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 48 ~~~~~~~kvFVGg--Lp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
-.+.|+++||||| |++++||++|+++|++||+|..++.. ++||||||+|++.++|++||+..++.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~--------~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--------PNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC--------TTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3477889999988 58999999999999999999864431 26799999999999999999988753
No 359
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.11 E-value=1.9e-10 Score=92.26 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=56.1
Q ss_pred CCCCCcEEEcCCCC-----CCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 50 SFPSPPQFPLQGTP-----HYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 50 ~~~~~kvFVGgLp~-----dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+.+++.|+|.||.. +-++++|++.|++||+|..+++.++.. .+++++|||||.|+++++|++|++..++
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~-~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG-APDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS-CCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC-CCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 35678999999962 347899999999999999777766531 2468999999999999999999987664
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.11 E-value=6e-11 Score=108.92 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=53.4
Q ss_pred CCCCcEEEcCCCCCC---------CHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQGTPHY---------DHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgLp~dv---------tEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.+.++|||||||+++ +|++|+++|++||+|..+.+. ++||||||+|.++++|++|+++.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~--------~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV--------ESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE--------GGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE--------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 456899999999998 799999999999999975543 2689999999999999999987654
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=5.2e-11 Score=95.33 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=51.4
Q ss_pred EEcCCCccchHHHHHHHH------------hhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 165 FVGGVPRPLKALELAMIM------------DRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 165 FVGnLp~~~TeedL~~~F------------~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++|||+.+|+++|.++| ++ ||.|..|.|+.|+ ++.+||||||+|.+.++|.+|++.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVID 87 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHH
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHH
Confidence 478999999999988888 98 9999999999996 589999999999999999999975
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5.1e-10 Score=89.94 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=51.4
Q ss_pred CCCCeEEEcCCCccch-----------HHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 159 DPRKTVFVGGVPRPLK-----------ALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 159 ~~~~tVFVGnLp~~~T-----------eedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++++|+|.||....+ +++|+++|++ ||.|..|.| .|+ .++|||||+|.+.++|.+||+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHH
Confidence 4678999999954433 6899999999 999999966 665 3899999999999999999974
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=3.2e-10 Score=90.92 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCCCeEEEcCC--Cccc--------hHHHHHHHHhhhCCCeeEEEEecCCCC--CCcceEEEEEecCHHHHHHHHHhccc
Q psy11409 159 DPRKTVFVGGV--PRPL--------KALELAMIMDRLYGGVCYAGIDTDPEL--KYPKGAGRVAFASQASYIAAISARFV 226 (320)
Q Consensus 159 ~~~~tVFVGnL--p~~~--------TeedL~~~F~~~fG~V~~v~I~~D~~t--g~pkGfgfVtF~~~esa~kAi~~~~~ 226 (320)
.|++.|.+.|+ |.++ +++||++.|++ ||.|.+|.|++|+.+ +.++|+|||+|.+.++|.+|++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~--- 78 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG--- 78 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH---
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH---
Confidence 36678888888 4444 34799999999 999999999999865 47899999999999999999975
Q ss_pred ccccCccc-eEEEeccc
Q psy11409 227 QLQHGEID-KRVEVKPY 242 (320)
Q Consensus 227 ~i~~~~~~-k~v~ikpy 242 (320)
+++..+. +.|.+.-|
T Consensus 79 -lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 79 -LTGRKFANRVVVTKYC 94 (105)
T ss_dssp -HTTCEETTEECEEEEE
T ss_pred -hCCCEeCCCEEEEEEe
Confidence 4444443 44455444
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=8.9e-11 Score=93.95 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=50.5
Q ss_pred EEcCCCCCCCHHHHHHHh------------ccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 57 FPLQGTPHYDHEEITASF------------RRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 57 FVGgLp~dvtEe~L~~~F------------s~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++|||+++|+++|++.| ++||+|..+++.++. +++++|||||.|+++++|++|++..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~---~~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL---GDHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS---SSSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC---CCCccEEEEEEECCHHHHHHHHHHHCC
Confidence 378999999999988887 999999977776643 378999999999999999999987654
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=8.5e-10 Score=90.51 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCcc-----chHHHHHHHHhhhCCCeeEEEEecCCC----CCCcceEEEEEecCHHHHHHHHHhccccccc
Q psy11409 160 PRKTVFVGGVPRP-----LKALELAMIMDRLYGGVCYAGIDTDPE----LKYPKGAGRVAFASQASYIAAISARFVQLQH 230 (320)
Q Consensus 160 ~~~tVFVGnLp~~-----~TeedL~~~F~~~fG~V~~v~I~~D~~----tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~ 230 (320)
|+++|++.|+-.. -.++||++.|++ ||.|.+|.|++|+. ++.++|+|||+|.+.++|.+|++. +++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~----LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA----LNG 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH----HTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH----HCC
Confidence 5789999998432 247899999999 99999999999965 467899999999999999999975 445
Q ss_pred Cccc-eEEEeccc
Q psy11409 231 GEID-KRVEVKPY 242 (320)
Q Consensus 231 ~~~~-k~v~ikpy 242 (320)
..+. +.|.+.-|
T Consensus 94 r~f~GR~i~v~~~ 106 (118)
T 3ue2_A 94 RWFAGRKVVAEVY 106 (118)
T ss_dssp CEETTEECEEEEE
T ss_pred CEECCcEEEEEEc
Confidence 5553 44455544
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=9.3e-10 Score=87.78 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 170 PRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 170 p~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
+..+|+++|+++|++ ||.|..|.|+ +.+||||||+|.+.++|.+||+.
T Consensus 26 ~~~~te~~L~~~F~~-~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQK-YGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CCSCCHHHHHHHHHT-TSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHh-cCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh
Confidence 357899999999999 9999999998 47899999999999999999987
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.3e-09 Score=85.50 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 63 ~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.++||++|+++|++||+|..+.+. +++||||||+|+++++|++||+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-------~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-------SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-------SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-------cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 568999999999999999976554 36899999999999999999987443
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2.5e-09 Score=85.80 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=52.1
Q ss_pred CCCCCcEEEcCCCCCCC-----------HHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 50 SFPSPPQFPLQGTPHYD-----------HEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvt-----------Ee~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..+++.|+|.||....+ +++|+++|++||+|..+++ .+ ..++|||||+|.++++|++||+..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-----~~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-----RHPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-----TCTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-----CCCCEEEEEEECCHHHHHHHHHHcC
Confidence 45688999999954332 6899999999999997654 22 1389999999999999999998876
Q ss_pred c
Q psy11409 119 V 119 (320)
Q Consensus 119 ~ 119 (320)
.
T Consensus 86 g 86 (112)
T 2dit_A 86 G 86 (112)
T ss_dssp T
T ss_pred C
Confidence 4
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.90 E-value=2.9e-09 Score=85.31 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=54.4
Q ss_pred CCCCcEEEcCC--CCCCC--------HHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 51 FPSPPQFPLQG--TPHYD--------HEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 51 ~~~~kvFVGgL--p~dvt--------Ee~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
.|++-|.+.|+ |.++. +++|++.|++||+|..+.+.++....+++++|||||.|+++++|++|++..++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 46778888887 44554 37999999999999977666554212357899999999999999999988764
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.5e-08 Score=83.73 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCCCCCeEEEcCCCcc-chHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecC-HHHHHHHHHhc---cccccc
Q psy11409 157 PLDPRKTVFVGGVPRP-LKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFAS-QASYIAAISAR---FVQLQH 230 (320)
Q Consensus 157 ~~~~~~tVFVGnLp~~-~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~-~esa~kAi~~~---~~~i~~ 230 (320)
...+..-|||+||++. +|.++|+++|++ ||.|.+|.+..|.. .|||.|.+ .++|.+|++.. -++|.+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 4456788999999999 999999999999 99999999999975 49999999 88999998863 344444
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.74 E-value=1.2e-08 Score=83.55 Aligned_cols=68 Identities=15% Similarity=0.001 Sum_probs=54.0
Q ss_pred CCCcEEEcCCC--CCC---CHHHHHHHhccCCCeEEecccccCC--CCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 52 PSPPQFPLQGT--PHY---DHEEITASFRRFGPLVVDWPHKAES--KSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 52 ~~~kvFVGgLp--~dv---tEe~L~~~Fs~FG~V~v~~p~k~~~--~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
|++.|++.|+- .++ -+++|++.|++||+|..+++.++.. ..+++++|||||.|+++++|++|++..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 57789999984 233 3799999999999999766665532 12467899999999999999999998764
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.5e-07 Score=77.74 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=50.6
Q ss_pred CCCcEEEcCCCCC-CCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCC-HHHHHHHHHhCc
Q psy11409 52 PSPPQFPLQGTPH-YDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD-ESSVQQLIDACI 118 (320)
Q Consensus 52 ~~~kvFVGgLp~d-vtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~-eesv~kaL~~~~ 118 (320)
++.-|||+||+++ +++++|+++|++||+|..++..++.. .|||.|.+ +++|++|+...+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--------EEEEEESSCHHHHHHHHHHTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--------EEEEEECCChHHHHHHHHHhh
Confidence 3668999999999 99999999999999999776665432 49999999 889999998753
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.54 E-value=9.1e-08 Score=77.92 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=40.4
Q ss_pred hHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 174 KALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 174 TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.++||++.|++ ||.|.+|.|++|. ++|||||+|.+.++|.+|++.
T Consensus 30 l~edl~~~f~k-fG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 30 IKDDVIEECNK-HGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp HHHHHHHHHTT-TTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHH
Confidence 35689999999 9999999998773 599999999999999999975
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=2.8e-07 Score=72.34 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCCCeEEEcCCC----ccchH----HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccc
Q psy11409 159 DPRKTVFVGGVP----RPLKA----LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQ 229 (320)
Q Consensus 159 ~~~~tVFVGnLp----~~~Te----edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~ 229 (320)
+|..||+|.-.| .++.+ .+|.+.|++ ||.|..++|..|+ +||+|.+.++|.+||+..-.++.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeC
Confidence 466899998887 34444 679999999 9999999999995 89999999999999974333343
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.35 E-value=4.2e-07 Score=73.96 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 67 HEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 67 Ee~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+++|++.|++||+|..+.+.++ .++|||||.|++.++|++|++..++
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~------~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKN------SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTT------CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCEEEEEEecC------CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4689999999999997665442 2699999999999999999988765
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=5e-07 Score=71.37 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCCCCeEEEcCCCcc-----chH----HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccccc
Q psy11409 158 LDPRKTVFVGGVPRP-----LKA----LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQL 228 (320)
Q Consensus 158 ~~~~~tVFVGnLp~~-----~Te----edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i 228 (320)
.+|..||+|.-++.+ +.+ .+|.+.|++ ||.|..|+|..|+ +||+|.+.++|.+||+..-.+|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeee
Confidence 356789999998743 323 569999999 9999999999995 9999999999999997433334
Q ss_pred c
Q psy11409 229 Q 229 (320)
Q Consensus 229 ~ 229 (320)
.
T Consensus 83 ~ 83 (95)
T 1ufw_A 83 K 83 (95)
T ss_dssp T
T ss_pred C
Confidence 3
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.17 E-value=3e-06 Score=75.13 Aligned_cols=65 Identities=20% Similarity=0.060 Sum_probs=50.7
Q ss_pred chHHHHHHHHhhhCCCeeEEEEe----cCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccc-eEEEeccc
Q psy11409 173 LKALELAMIMDRLYGGVCYAGID----TDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEID-KRVEVKPY 242 (320)
Q Consensus 173 ~TeedL~~~F~~~fG~V~~v~I~----~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~-k~v~ikpy 242 (320)
-.+++|.+.|++ ||.|..|.|+ .|.+++.++|++||+|.+.++|.+||+. +++..+. +.|.+.-|
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~----l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA----LNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH----HTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH----hcCceECCeEEEEEEc
Confidence 467899999998 9999999999 4455669999999999999999999875 3344442 34444433
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.4e-05 Score=62.72 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=49.6
Q ss_pred CCCcEEEcCCC----CCCCH----HHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCc
Q psy11409 52 PSPPQFPLQGT----PHYDH----EEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDK 123 (320)
Q Consensus 52 ~~~kvFVGgLp----~dvtE----e~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~ 123 (320)
|..+|+|.-.| .++-+ .+|.+.|++||+|....+.. +.+||+|++.++|.+||+......++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~----------d~~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE----------DKMWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS----------SSEEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec----------CCEEEEECChHHHHHHHhcCCeEeCC
Confidence 45689988876 23434 78999999999998765543 22899999999999999843334455
Q ss_pred eEEEec
Q psy11409 124 CYLCVS 129 (320)
Q Consensus 124 ~~vkis 129 (320)
..++++
T Consensus 76 r~LkV~ 81 (91)
T 2dnr_A 76 RTITIA 81 (91)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556554
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.90 E-value=7.2e-06 Score=72.69 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=45.1
Q ss_pred CCCHHHHHHHhccCCCeEEecccccC--CCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 64 HYDHEEITASFRRFGPLVVDWPHKAE--SKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 64 dvtEe~L~~~Fs~FG~V~v~~p~k~~--~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
+-.+++|++.|++||+|..+.+.++. ...+++++|++||.|+++++|++|++..++
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g 197 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 197 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC
Confidence 44678999999999999865444332 134679999999999999999999998664
No 380
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=0.00011 Score=58.81 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhC----CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccce
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLY----GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDK 235 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~f----G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k 235 (320)
..++|.|-|||..+.++.|.-+|+..- |.|+.+...- +-|.|+|.+.+.+++.++..-|.+.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~---- 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGA---- 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSS----
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCe----
Confidence 468999999999999999999998732 5687776533 678999999999999999988888764
Q ss_pred EEEeccccccccccccccC
Q psy11409 236 RVEVKPYVLDDQMCDECQG 254 (320)
Q Consensus 236 ~v~ikpy~~~~~~c~~c~~ 254 (320)
.+.|.||.+.++-|-.-++
T Consensus 75 ~LsV~P~~~~~~~r~ll~g 93 (104)
T 2dhx_A 75 QLSLRPAPPRAPARLLLQG 93 (104)
T ss_dssp BCEEEECCCCCCCCCCCCS
T ss_pred EEEEEcCCCCCcceEeeec
Confidence 6778999877666554444
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=2.8e-05 Score=61.33 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=50.8
Q ss_pred CCCCcEEEcCCCCC-----CCH----HHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCC
Q psy11409 51 FPSPPQFPLQGTPH-----YDH----EEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDE 121 (320)
Q Consensus 51 ~~~~kvFVGgLp~d-----vtE----e~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~ 121 (320)
-|..+|+|.-++++ +-+ .+|.+.|++||+|.......+ + +||+|.+.++|.+||+....+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d------~----~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG------Q----MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT------E----EEEECSCSHHHHHHHHGGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC------c----EEEEEcChHHHHHHHhcCCeee
Confidence 34679999988754 322 679999999998886544332 1 9999999999999998433345
Q ss_pred CceEEEec
Q psy11409 122 DKCYLCVS 129 (320)
Q Consensus 122 ~~~~vkis 129 (320)
++..++++
T Consensus 83 ~Gr~L~V~ 90 (95)
T 1ufw_A 83 KGRAVKIS 90 (95)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEe
Confidence 66666664
No 382
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.38 E-value=0.00041 Score=54.92 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=50.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
+.+...||+-+.|.++...+|.++|+.||-|.+.|+- ++ -|||+|.+++.|..||+..
T Consensus 12 ~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~I~Wid--DT--------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWID--DT--------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEEE--TT--------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCChhhhhHHHHHHhhccCCEEEEEEc--CC--------eEEEEecCHHHHHHHHHhc
Confidence 3445588888999999999999999999999999994 22 5999999999999999853
No 383
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00031 Score=55.80 Aligned_cols=54 Identities=15% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~ 116 (320)
...||+-+.|.++...+|.++|+.||.|.+.|+-. + -|||+|.+++.|..||+.
T Consensus 5 R~HV~~l~FP~ewKt~Di~~lFs~fggv~I~WidD--T--------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 5 SDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDD--T--------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEEEECCTTCCHHHHHHHTTTSEEEEEEEEET--T--------EEEEEEEEECHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHHhccCCEEEEEEcC--C--------eEEEEecCHHHHHHHHHh
Confidence 44788889999999999999999999999999942 2 599999999999999985
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.0031 Score=50.36 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=63.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhcc-C----CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccCCCce
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRR-F----GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKC 124 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~-F----G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~~~~~ 124 (320)
+-...+|.|-|||.+++++.|.-||+. - |+|....- . . +-|+|+|.+.+.|+++|+...|...+.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~-~--------~-~~AvItF~d~~va~rVL~k~~H~L~~~ 74 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR-L--------G-CGGVLTFREPADAERVLAQADHELHGA 74 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE-E--------T-TEEEEEESSHHHHHHHHTCSCCBSSSS
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE-c--------C-CcEEEEEcChHHHHHHhcCCcceecCe
Confidence 344679999999999999999999987 2 56664211 1 1 568999999999999998756553332
Q ss_pred EEEecCCCccCCCccccccccCCcccccCCCCCCCCCCeEEEcCCCccch
Q psy11409 125 YLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLK 174 (320)
Q Consensus 125 ~vkis~~~~~~K~vqvrPw~~~d~~y~~~~~~~~~~~~tVFVGnLp~~~T 174 (320)
++.|.|+. +.+ ..++++.|||..++
T Consensus 75 ------------~LsV~P~~------------~~~-~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 ------------QLSLRPAP------------PRA-PARLLLQGLPPGTS 99 (104)
T ss_dssp ------------BCEEEECC------------CCC-CCCCCCCSCCCCCC
T ss_pred ------------EEEEEcCC------------CCC-cceEeeecCCCCCC
Confidence 33445542 122 25688888888764
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.08 E-value=0.026 Score=43.91 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=59.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcc--eEEEEEecCHHHHHHHHHh--cccccccCcc--ce
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPK--GAGRVAFASQASYIAAISA--RFVQLQHGEI--DK 235 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pk--GfgfVtF~~~esa~kAi~~--~~~~i~~~~~--~k 235 (320)
.+|-|.+||+.+||+++.+.++. ...+........+.+.++. .-|+|.|.+.+++..-.+. .++.++..+. .-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47999999999999999999999 8899888887665555443 5589999999888776553 3444554433 23
Q ss_pred EEEeccc
Q psy11409 236 RVEVKPY 242 (320)
Q Consensus 236 ~v~ikpy 242 (320)
.||.-||
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 5677777
No 386
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.74 E-value=0.0033 Score=62.48 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhC
Q psy11409 52 PSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 52 ~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~ 117 (320)
..+.|||. .|.++++++|.++|++||+|.....-++ ..-|+.|+|.++++|++++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-------~g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-------FGLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-------SSEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-------CCeEEEEEeCCHHHHHHHHhcc
Confidence 35799998 6999999999999999999996544332 1269999999999999988654
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.74 E-value=0.0054 Score=60.99 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
..++|||. .|..+++.+|.++|++ ||.|.++....|+ .-||.|.|.+.+++.++++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQ-FGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGG-GSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHh-cCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 34899998 7999999999999999 9999999998875 3699999999999999986543
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.034 Score=44.94 Aligned_cols=55 Identities=4% Similarity=-0.020 Sum_probs=50.8
Q ss_pred CCCeEEEcCCCccchHHHHHHHHhhhC-----CCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q psy11409 160 PRKTVFVGGVPRPLKALELAMIMDRLY-----GGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221 (320)
Q Consensus 160 ~~~tVFVGnLp~~~TeedL~~~F~~~f-----G~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi 221 (320)
..++|=+=|||..+++..++.+.++ | |.+..+.+..|- |-|.|.|.+..+|-||.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKML 79 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCC------CceEEEEccchhhHHHH
Confidence 3578999999999999999999999 9 999999999995 78999999999999984
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.49 E-value=0.042 Score=42.71 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=46.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEe--cccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVD--WPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~--~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
.||-|..||+++||+++.+.++...++..- ++.+.... -..-.-|||.|.+.+++....+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~--~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY--PHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST--TCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC--CCcceEEEEEeCCHHHHHHHHHHhC
Confidence 389999999999999999999998876521 22222111 1223669999999999988887644
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.30 E-value=0.046 Score=43.21 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=45.5
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..-||+=+.|..+.-.||.++|+. ||.| .|.-+-|- .|||.|.+++.|..|++.
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~-fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSA-FGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTT-TCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhc-cCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 345776699999999999999999 9965 46666672 899999999999999874
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.95 E-value=0.053 Score=42.94 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=44.7
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
.-||+=+.|..+.-.||.++|+. ||.| .|.-+-| -.|||.|.+++.|..|+++
T Consensus 6 ~HV~~l~FP~ewKt~Di~~lFs~-fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHVTFPKEWKTSDLYQLFSA-FGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEEECCTTCCHHHHHHHTTT-SEEE-EEEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHHhc-cCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence 34666699999999999999999 9944 5666667 3899999999999999875
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.76 E-value=0.3 Score=39.80 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=56.4
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccCccceEEEec
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVK 240 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~~~~k~v~ik 240 (320)
..-|-|-|.|... .+.+-+.|++ ||.|+...... ..-+-.|+|.++.+|++||...-..|.+ ...|=++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g---~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGE---SIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETT---TEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecC---CEEEEEE
Confidence 4779999999995 6777788998 99999888622 2468899999999999999875444432 2456778
Q ss_pred ccccccc
Q psy11409 241 PYVLDDQ 247 (320)
Q Consensus 241 py~~~~~ 247 (320)
|+. |..
T Consensus 93 p~~-d~~ 98 (119)
T 1wwh_A 93 PCI-DKN 98 (119)
T ss_dssp ECC-CHH
T ss_pred ECC-CHH
Confidence 873 443
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.75 E-value=0.088 Score=41.43 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=54.4
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcc--eEEEEEecCHHHHHHHHHh--cccccccCcc--c
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPK--GAGRVAFASQASYIAAISA--RFVQLQHGEI--D 234 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pk--GfgfVtF~~~esa~kAi~~--~~~~i~~~~~--~ 234 (320)
+-+|-|..||+.+||+++.+.++.+. .+.+-.....+.+.++- .-|+|.|.+.+++..-.+. .++.++.... .
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLP-AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCS-SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcC-ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46899999999999999999888843 45544443333333332 4489999999998876653 3444544333 3
Q ss_pred eEEEeccc
Q psy11409 235 KRVEVKPY 242 (320)
Q Consensus 235 k~v~ikpy 242 (320)
-.||.-||
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 45677777
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.41 E-value=0.23 Score=39.07 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCC-CCCCC-cceEEEEeCCHHHHHHHHHhCc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESK-SYFPP-KGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~-~tg~s-kGygFV~F~~eesv~kaL~~~~ 118 (320)
+-||-|..||+.+||+++.+.++..=++ +|..--..+ ..+.+ -.-|||.|.+.+++....+.-.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~--d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH--DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE--EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc--ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 5699999999999999998888775443 443221111 11222 2668999999999988887643
No 395
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.4 Score=38.73 Aligned_cols=71 Identities=6% Similarity=-0.132 Sum_probs=52.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHhccC-----CCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc-CCCce
Q psy11409 51 FPSPPQFPLQGTPHYDHEEITASFRRF-----GPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV-DEDKC 124 (320)
Q Consensus 51 ~~~~kvFVGgLp~dvtEe~L~~~Fs~F-----G~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~-~~~~~ 124 (320)
...++|=+-+||-.+++..|+.+.+++ |.++-.... +.-|-|+|+|.|+..|-+|.-+.++ +.++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~--------pDH~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV--------SDFNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE--------TTTTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe--------cCCCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 346799999999999999999999999 888743332 2346799999999999777644443 33445
Q ss_pred EEEec
Q psy11409 125 YLCVS 129 (320)
Q Consensus 125 ~vkis 129 (320)
.+++.
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 55554
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.63 E-value=0.13 Score=42.61 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCC----------CC-CC-CCcceEEEEeCCHHHHHHHHHhC
Q psy11409 50 SFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAES----------KS-YF-PPKGYAFLLFQDESSVQQLIDAC 117 (320)
Q Consensus 50 ~~~~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~----------~~-tg-~skGygFV~F~~eesv~kaL~~~ 117 (320)
+.....|.|-|-|.+.+ ..+.+.|++||.|....+..... +. .+ ....+..|+|++..+|++||+..
T Consensus 4 ~~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 4 SNGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp ----CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred ccCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 34456788889977665 45667899999999755432210 00 00 13578999999999999999765
Q ss_pred cc
Q psy11409 118 IV 119 (320)
Q Consensus 118 ~~ 119 (320)
..
T Consensus 83 G~ 84 (132)
T 3p3d_A 83 GA 84 (132)
T ss_dssp TC
T ss_pred Ce
Confidence 43
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=91.57 E-value=0.37 Score=39.23 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=46.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCcc
Q psy11409 53 SPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIV 119 (320)
Q Consensus 53 ~~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~ 119 (320)
...|-|-|-|.+. ...+..+|++||+|..... . ...-+..|.|++..+|++||.....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~------~~~NWihI~Y~s~~~A~rAL~kNG~ 81 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--S------NTGNWMHIRYQSKLQARKALSKDGR 81 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--C------SSSSEEEEEESSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--C------CCCCeEEEEeCCHHHHHHHHHhCCe
Confidence 5689999999985 6778889999999995432 1 1346999999999999999976443
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.58 E-value=0.47 Score=39.26 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=51.9
Q ss_pred CCeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecC----------CCCCCc----ceEEEEEecCHHHHHHHHHhccc
Q psy11409 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTD----------PELKYP----KGAGRVAFASQASYIAAISARFV 226 (320)
Q Consensus 161 ~~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D----------~~tg~p----kGfgfVtF~~~esa~kAi~~~~~ 226 (320)
..-|.|-|.|...+ ..+-+.|++ ||.|.+-.-..+ +..++| ..+-.|+|++..+|.+||...-.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 35688889988754 556688999 999877321211 123444 35678999999999999986554
Q ss_pred ccccCccceEEEecccc
Q psy11409 227 QLQHGEIDKRVEVKPYV 243 (320)
Q Consensus 227 ~i~~~~~~k~v~ikpy~ 243 (320)
.+.+ --|=++||-
T Consensus 85 ii~G----~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNG----VLLGVIPYT 97 (132)
T ss_dssp EETT----EECEEEECC
T ss_pred EeCc----EEEEEEECC
Confidence 4543 266788883
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.71 E-value=0.77 Score=45.87 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=47.0
Q ss_pred CcEEEcCCCCCCCHHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCc
Q psy11409 54 PPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACI 118 (320)
Q Consensus 54 ~kvFVGgLp~dvtEe~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~ 118 (320)
..+|+-+.|..+...+|.+.|+.||.|.+.|... -.+||.|.+.++|..+|++..
T Consensus 440 ~~vl~v~f~~~~~~~~i~~~fs~fg~v~V~widd----------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDD----------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEECCTTCCHHHHHHHGGGGCCCEEEECSS----------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEcC----------CeEEEEECCHHHHHHHHHHHH
Confidence 4677777999999999999999999999888832 259999999999999998653
No 400
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=84.87 E-value=0.45 Score=34.73 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=31.1
Q ss_pred cccccccccCcccCCCcccccCCccch-hhhcchhhhhhhhCCCCCCCCcccc
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCC-LQYYCEHCWATIHSKPGREFHKPLV 296 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c-~~y~c~~cw~~~h~~~~~~~h~p~~ 296 (320)
+..-|-+|... |.+-|.. | -.-||..||.-+|-....+.|+..-
T Consensus 7 e~pWC~ICneD------AtlrC~g--CdgDLYC~rC~rE~H~~~d~r~Hk~v~ 51 (67)
T 2d8v_A 7 GLPWCCICNED------ATLRCAG--CDGDLYCARCFREGHDNFDLKEHQTSP 51 (67)
T ss_dssp CCSSCTTTCSC------CCEEETT--TTSEEECSSHHHHHTTTSSTTTCCEEC
T ss_pred CCCeeEEeCCC------CeEEecC--CCCceehHHHHHHHccchhhhccceee
Confidence 34457788763 5565542 2 2579999999999765778998765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.23 E-value=3.7 Score=40.91 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=42.3
Q ss_pred CeEEEcCCCccchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy11409 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223 (320)
Q Consensus 162 ~tVFVGnLp~~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~ 223 (320)
..++|+ +|..+...+|.++|+. ||.| +|..+.| -.|||.|.+.++|..++.+
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~-fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSA-FGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGG-GCCC-EEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHh-cCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 344455 9999999999999998 9964 6766666 3799999999999988864
No 402
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.02 E-value=4.6 Score=31.92 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=42.5
Q ss_pred CCeEEEcCCCccc-hH----HHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q psy11409 161 RKTVFVGGVPRPL-KA----LELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221 (320)
Q Consensus 161 ~~tVFVGnLp~~~-Te----edL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi 221 (320)
..+++|-|||.++ +. +.++++|.. |+++..-.....= + =.+|.|.+.++|.+|=
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSF--R----Rirv~F~~~~~A~~AR 63 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSF--K----RVRINFSNPLSAADAR 63 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTT--T----EEEEECSSTTHHHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcc--e----EEEEEeCChHHHHHHH
Confidence 3689999999877 32 566899998 9998887777662 1 3489999999998883
No 403
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.04 E-value=11 Score=29.80 Aligned_cols=60 Identities=10% Similarity=-0.045 Sum_probs=45.3
Q ss_pred CCcEEEcCCCCCC-C----HHHHHHHhccCCCeEEecccccCCCCCCCCcceEEEEeCCHHHHHHHHHhCccC
Q psy11409 53 SPPQFPLQGTPHY-D----HEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVD 120 (320)
Q Consensus 53 ~~kvFVGgLp~dv-t----Ee~L~~~Fs~FG~V~v~~p~k~~~~~tg~skGygFV~F~~eesv~kaL~~~~~~ 120 (320)
..+|+|-+|+.++ + .+.++++|.+|+++..--+.+ |-.=.-|.|.++++|.+|=...++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--------SFRRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--------SFKRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--------TTTEEEEECSSTTHHHHHHHTSTTS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--------cceEEEEEeCChHHHHHHHHHhccc
Confidence 4589999999766 2 257899999999998533332 3335799999999999888776654
No 404
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=50.66 E-value=4.3 Score=38.21 Aligned_cols=16 Identities=31% Similarity=0.970 Sum_probs=13.4
Q ss_pred hhhcchhhhhhhhCCC
Q psy11409 272 LQYYCEHCWATIHSKP 287 (320)
Q Consensus 272 ~~y~c~~cw~~~h~~~ 287 (320)
.+-||++||+|+-.+.
T Consensus 16 ~~~~~~~~~~~~~~~~ 31 (354)
T 3nmw_A 16 IRAYCETCWEWQEAHE 31 (354)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4679999999998765
No 405
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=44.30 E-value=5 Score=27.71 Aligned_cols=27 Identities=33% Similarity=0.792 Sum_probs=18.8
Q ss_pred cccccccccCcccCCCcccccCCccchhhhcchhhhhhhh
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIH 284 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h 284 (320)
|.=.|-+|... .+-+.-||..||+.+-
T Consensus 10 D~WkC~~C~k~-------------N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 10 DEWQCTECKKF-------------NSPSKRYCFRCWALRK 36 (53)
T ss_dssp CCEECSSSCCE-------------ECSSCCBCTTTCCBCC
T ss_pred ceeeccccccc-------------CCCccchhHHHHHhhc
Confidence 44567777764 3456779999997654
No 406
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=41.51 E-value=5.4 Score=26.93 Aligned_cols=26 Identities=31% Similarity=0.657 Sum_probs=19.2
Q ss_pred cccccccccCcccCCCcccccCCccchhhhcchhhhhhh
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATI 283 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~ 283 (320)
|.=+|-+|... .+-+.-||..||+.+
T Consensus 12 D~WkC~~C~~~-------------N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 12 DYWKCTSCNEM-------------NPPLPSHCNRCWALR 37 (46)
T ss_dssp GCEECTTTCCE-------------ECSSCSSCTTTCCCC
T ss_pred ceEeccccccc-------------CCCccchhhHHHhhc
Confidence 56678888764 345678999999765
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.35 E-value=43 Score=25.20 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.8
Q ss_pred CcceEEEEeCCHHHHHHHHHh
Q psy11409 96 PKGYAFLLFQDESSVQQLIDA 116 (320)
Q Consensus 96 skGygFV~F~~eesv~kaL~~ 116 (320)
-.||.||.++..+++..+|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTT
T ss_pred cCCEEEEEEecchhHHHHHHC
Confidence 679999999999888877743
No 408
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=36.92 E-value=27 Score=25.51 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=31.6
Q ss_pred cccccccccCcccCCCcccccCCccchhhhcchhhhhhhhCCC-CCCCCcc
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKP-GREFHKP 294 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~~~-~~~~h~p 294 (320)
.+-.|+.|.+.+ +..+-=.| +.|.-.||+.|....|... ....|+-
T Consensus 29 ~~v~C~~C~~~~--~~~A~ksC--l~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 29 EKVLCQFCDQDP--AQDAVKTC--VTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCCBCSSCCSSS--CCBCCEEE--TTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CCccCCcCCCCC--CCCCeeEc--cCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 467899997631 12334444 6788999999999889774 4566753
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.94 E-value=7.2 Score=32.43 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=24.2
Q ss_pred ccccccccCcccCCCcccccCCccchhhhcchhhhhhhhC
Q psy11409 246 DQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHS 285 (320)
Q Consensus 246 ~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~ 285 (320)
...|+.|++. +|..=-|+...= ..-|-.|...-|.
T Consensus 97 ~~~C~~Cg~~----GH~a~~C~~~~~-~~~C~~Cg~~GH~ 131 (148)
T 3ts2_A 97 GDRCYNCGGL----DHHAKECKLPPQ-PKKCHFCQSINHM 131 (148)
T ss_dssp SCCCTTTCCS----SCCGGGCCSCCC-CCCCTTTCCSSCC
T ss_pred CCcccEeCCc----cchhhhCCCCCC-CCcccccCCcCCE
Confidence 5679999987 688888885110 2356778877774
No 410
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=30.48 E-value=7.3 Score=34.66 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=55.1
Q ss_pred chHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcccccccC-c--cceEEEecccccccccc
Q psy11409 173 LKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHG-E--IDKRVEVKPYVLDDQMC 249 (320)
Q Consensus 173 ~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i~~~-~--~~k~v~ikpy~~~~~~c 249 (320)
+|+.+|++.|-+ +..+.++ |-+.---+..-|+-..|..+ ..+|+..... + .....++-|.. ...||
T Consensus 90 lTe~qIrk~F~K----aKkLklP-dl~~~dw~~ldyLGW~D~~~-----~R~ylV~~~~~g~lvGi~lr~~~~~-~k~~C 158 (215)
T 2yb5_A 90 PSSSQLEKIFRK----VKKLKRP-DINLIDTKEISYLGWNDNSS-----NRKYIVYKNLDDKFEGIYGEISPNK-VKGFC 158 (215)
T ss_dssp CCHHHHHHHTTT----CSSCCCC-CGGGCCTTSCSSEEEEETTT-----TEEEEEEECTTSCEEEEEEEECSSC-EEEEC
T ss_pred CCHHHHHHHhhh----HHhcCCC-CcccCCcccCceeeeccCCC-----CceEEEEECCCCCEEEEEEEcCCCC-CCccc
Confidence 699999999974 6666777 53222223333445555543 4456665433 2 23444666774 88999
Q ss_pred ccccCc--------ccCCC--------cccccCCcc-chhhh
Q psy11409 250 DECQGV--------RCGGK--------FAPFFCANV-CCLQY 274 (320)
Q Consensus 250 ~~c~~~--------~~~~~--------~~~y~c~~~-~c~~y 274 (320)
..|... ++.|. -+-|.|.++ .|-+|
T Consensus 159 ~lC~~~~~VsLf~a~~~g~g~~g~y~tvG~YIC~D~~~Cn~~ 200 (215)
T 2yb5_A 159 KICNQESDTSLFLNKTKHNKSSGTYTKKGDYICYDSFKCNQN 200 (215)
T ss_dssp TTTCSEEEEEEEEECC--------CCCEEEEEESSHHHHHHH
T ss_pred cccCCCCcEEEEEEecCCCCCCCCCCceEEEEeCCHHHHHHH
Confidence 999851 22222 356999999 99776
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.55 E-value=90 Score=23.51 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=41.3
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCCC-eeEEEEecCCCCCCcceE--EEEEecCHHHHHHH
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYGG-VCYAGIDTDPELKYPKGA--GRVAFASQASYIAA 220 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG~-V~~v~I~~D~~tg~pkGf--gfVtF~~~esa~kA 220 (320)
+-++--++...|..++++.++++||- |..|..+.-+ +|. |+|+.....++...
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-----~~~KKA~V~L~~~~~a~dv 79 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-----RGEKKAYVKLKPEYSASEV 79 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-----TSCEEEEEEECTTSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-----CCceEEEEEcCCCCcHHHH
Confidence 45666678899999999999999994 8888877654 343 89999877766554
No 412
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.14 E-value=25 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=21.7
Q ss_pred cccccccccCcccCCCcccccCCc-cchhhhcchhhhhhhhC
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCAN-VCCLQYYCEHCWATIHS 285 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~-~~c~~y~c~~cw~~~h~ 285 (320)
+...|..|.... ..+- ... ..|--.||..||.....
T Consensus 4 ~~~~C~IC~~~~----~~~~-~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 4 GSSGCKLCLGEY----PVEQ-MTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp SBCCCSSSCCCC----BGGG-EEEETTTTEEEEHHHHHHHHH
T ss_pred CCcCCcccCccc----cccc-ceEcCCCCCcccHHHHHHHHH
Confidence 345688887641 1111 111 14888999999987654
No 413
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=25.20 E-value=7.5 Score=34.74 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=50.2
Q ss_pred cchHHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhccccc-c-cCcc-ceEEEeccccccccc
Q psy11409 172 PLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQL-Q-HGEI-DKRVEVKPYVLDDQM 248 (320)
Q Consensus 172 ~~TeedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~~~i-~-~~~~-~k~v~ikpy~~~~~~ 248 (320)
.+|+.+|++.|-. +..++++ |-+.---+..-|.-..|..+ ..+|+.. . .++. ....++-|. ....|
T Consensus 97 ~lTe~qIrk~F~k----aKkLklP-dl~~~dw~~l~yLGW~D~~~-----~R~YlV~~~~~~~lvGi~lr~~~~-~~k~~ 165 (222)
T 4adn_A 97 LPSPQKLQKVFKK----VKKIKIP-QFEEYDLKVSSFVGWNELAS-----NRKYIIYYDEKKQLKGLYGEISNQ-VVKGF 165 (222)
T ss_dssp CCCHHHHHHHTTT----STTCCCC-CCCHHHHHTCSEEEEEEGGG-----TEEEEEEECTTCCEEEEEEEECSC-CEEEE
T ss_pred CCCHHHHHHHhhh----hhccCCC-CcccCCcccCceEeeecCCC-----CcEEEEEEecCCeEEEEEEecCCC-CcCCc
Confidence 3588888888875 4555555 31110111122555555543 4556666 3 2222 334455565 47899
Q ss_pred cccccCc---------------ccCCCcccccCCcc-chhhh
Q psy11409 249 CDECQGV---------------RCGGKFAPFFCANV-CCLQY 274 (320)
Q Consensus 249 c~~c~~~---------------~~~~~~~~y~c~~~-~c~~y 274 (320)
|..|... +.+-.-+-|.|.+. .|-+|
T Consensus 166 CslC~~~~~VsLf~a~~ag~a~~~y~tvG~YIC~Ds~~Cn~~ 207 (222)
T 4adn_A 166 CTICNKESNVSLFMKKSKTNSDGQYVKKGDYICRDSIHCNKQ 207 (222)
T ss_dssp CTTTCSEEEEEEEEEECCCCTTSCCCEEEEEEESSHHHHHHH
T ss_pred cccCCCCCcEEEEEEecCCCCCCCccccEEEEcCCHHHHhhh
Confidence 9999853 01112356888877 77654
No 414
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.42 E-value=35 Score=25.41 Aligned_cols=35 Identities=26% Similarity=0.711 Sum_probs=24.0
Q ss_pred ccccccccCcccCCCcccccCCccchhh---h-cchhhhhhhh
Q psy11409 246 DQMCDECQGVRCGGKFAPFFCANVCCLQ---Y-YCEHCWATIH 284 (320)
Q Consensus 246 ~~~c~~c~~~~~~~~~~~y~c~~~~c~~---y-~c~~cw~~~h 284 (320)
...|+.|+..+-.| .-|-| ..|.. | +|..|+...+
T Consensus 21 ~~~Cd~C~~~pI~G--~RykC--~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQG--VRWHC--QDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEES--CEEEE--SSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCccee--ceEEC--CcCCCCcceecHHHHHhCcc
Confidence 55799998642122 35777 47887 6 9999997644
No 415
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=24.03 E-value=53 Score=24.44 Aligned_cols=45 Identities=24% Similarity=0.526 Sum_probs=29.5
Q ss_pred cccccccccCcccCCCcccccCCccchhhhcchhhhhhhhCCC-CCCCCc
Q psy11409 245 DDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKP-GREFHK 293 (320)
Q Consensus 245 ~~~~c~~c~~~~~~~~~~~y~c~~~~c~~y~c~~cw~~~h~~~-~~~~h~ 293 (320)
++-.|+.|.+.. ...+.-.| +.|.-.||+.|....|... ....|+
T Consensus 2 ee~~C~~C~~~~--~~~av~~C--~~C~~~~C~~Cl~~~h~~~~~~~~h~ 47 (101)
T 2jun_A 2 EKVLCQFCDQDP--AQDAVKTC--VTCEVSYCDECLKATHPNKKPFTGHR 47 (101)
T ss_dssp CCCBCTTCCSSS--CCBCCEEE--TTTTEEECHHHHHHHSCSCSSSTTCC
T ss_pred CCCCCcCCCCCC--CCCceEEC--CcCChHHhHHHCHHHhccCCccCCCe
Confidence 456799998520 02333334 5689999999999888743 334565
No 416
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=22.22 E-value=70 Score=30.00 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=39.3
Q ss_pred eEEEcCCCccch----HHHHHHHHhhhCCCeeEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhcc
Q psy11409 163 TVFVGGVPRPLK----ALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARF 225 (320)
Q Consensus 163 tVFVGnLp~~~T----eedL~~~F~~~fG~V~~v~I~~D~~tg~pkGfgfVtF~~~esa~kAi~~~~ 225 (320)
--+||||+.-.. ...+.+...+ ||+|..+.+-..+ .|.-.+.+.+..++..++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~k-YG~i~~~~~g~~~---------~vvv~~p~~~k~il~~~~ 72 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKK-YGPIYSVRMGTKT---------TVIVGHHQLAKEVLIKKG 72 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHH-HCSEEEEEETTEE---------EEEECSHHHHHHHHTTTT
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHH-cCCEEEEEeCCCC---------EEEECCHHHHHHHHHhCc
Confidence 457899875432 3567777777 9999888875443 788899999999986543
No 417
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.05 E-value=1.5e+02 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.9
Q ss_pred eEEEcCCCccchHHHHHHHHhhhCC-CeeEEEEecC
Q psy11409 163 TVFVGGVPRPLKALELAMIMDRLYG-GVCYAGIDTD 197 (320)
Q Consensus 163 tVFVGnLp~~~TeedL~~~F~~~fG-~V~~v~I~~D 197 (320)
+.|+--++...|..++++.++.+|| .|..|....=
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~ 63 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV 63 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe
Confidence 4666778999999999999999999 4888876653
No 418
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=20.22 E-value=62 Score=23.76 Aligned_cols=18 Identities=0% Similarity=-0.071 Sum_probs=13.4
Q ss_pred cCCCCC-CCHHHHHHHhcc
Q psy11409 59 LQGTPH-YDHEEITASFRR 76 (320)
Q Consensus 59 GgLp~d-vtEe~L~~~Fs~ 76 (320)
++.|++ +|.++|+++..+
T Consensus 38 ~~~~~~~it~~eL~~fL~~ 56 (74)
T 1ldd_A 38 KDWGYNRITLQQLEGYLNT 56 (74)
T ss_dssp GGGCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHH
Confidence 355676 499999998864
Done!