RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11409
(320 letters)
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 37.4 bits (86), Expect = 3e-04
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+ + +F+GG+ L ++ +G + + DP K +G G V F+S A
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
Query: 219 AAISARFVQLQHGEIDKRVEVKP 241
AA++AR + + VE K
Sbjct: 77 AAMAARPHSID----GRVVEPKR 95
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 35.8 bits (82), Expect = 9e-04
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIA 219
++ ++VGG+ + L +G + I D E + +G V F A
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 220 AISARFVQLQHGEID-KRVEVK 240
AI + E+ + + V
Sbjct: 63 AIDN----MNESELFGRTIRVN 80
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 35.0 bits (80), Expect = 0.001
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIA 219
P T+++ + +K EL + ++ +G V F +S
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 220 AISARFVQLQHGEID-KRVEVK 240
A+ + +Q K + ++
Sbjct: 62 ALRS----MQGFPFYDKPMRIQ 79
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 36.1 bits (82), Expect = 0.003
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+ + +F+GG+ L ++ +G + + DP K +G G V +A+
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 219 AAISAR-FVQLQHGEIDKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCE 277
AA++AR KR + + + GG L+ Y E
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGG---IKEDTEEHHLRDYFE 119
Query: 278 HCWATIHSKPGREFHKPLVKEGAY 301
+ + + A+
Sbjct: 120 QYGKIEVIEIMTDRGSGKKRGFAF 143
Score = 28.4 bits (62), Expect = 0.88
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLID 115
+ + F ++G ++ + +G+AF+ F D SV +++
Sbjct: 107 EDTEEHHLRDYFEQYGK--IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 33.9 bits (77), Expect = 0.003
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
DP + V G+ +L + + YG + I D + + +G V F +
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 65
Query: 219 AAISARFVQLQHGEID-KRVEV 239
A E+D +R+ V
Sbjct: 66 EAKER----ANGMELDGRRIRV 83
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 34.2 bits (78), Expect = 0.004
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 156 MPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQA 215
+P + + +++ +P + A E+ I + YG + +G V +
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQ---IRVGNTPETRGTAYVVYEDIF 57
Query: 216 SYIAAISARFVQLQHGEID-KRVEVKPY 242
A L + + + V Y
Sbjct: 58 DAKNACDH----LSGFNVCNRYLVVLYY 81
Score = 29.6 bits (66), Expect = 0.20
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
EE+ F ++GP+ + +G A+++++D + D
Sbjct: 17 YKITAEEMYDIFGKYGPIRQIRV-----GNTPETRGTAYVVYEDIFDAKNACDH 65
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 33.5 bits (76), Expect = 0.005
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+ + +F+GG+ L ++ + DP K +G G V +A+
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDC-VVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 219 AAISARFVQLQHGEIDKRVEVK 240
AA++AR ++ + VE K
Sbjct: 63 AAMNARPHKVD----GRVVEPK 80
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 32.8 bits (74), Expect = 0.009
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221
K +FVGG+ + L ++ YG + I TD +G V F S +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
Query: 222 SARFVQLQHGEIDKRVEVK 240
++ + EV+
Sbjct: 62 IQKYHTVN----GHNCEVR 76
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 32.5 bits (73), Expect = 0.018
Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+ + +P + +++ ++ A G V F ++
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR 64
Query: 219 AAISARFVQLQHGEI 233
+ +L E
Sbjct: 65 KSERLHRKKLNGREA 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.9 bits (72), Expect = 0.018
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+ V G+P +L + + D + + KG G V F + +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ-VKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 219 AAISARFVQLQHGEIDKRVEVKP 241
+S R H + + K
Sbjct: 65 KVMSQR-----HMIDGRWCDCKL 82
Score = 27.2 bits (60), Expect = 0.83
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
+++ F FG +++ K KG+ F+ F + + +++
Sbjct: 18 WKTTEQDLKEYFSTFGEVLMVQVKK--DLKTGHSKGFGFVRFTEYETQVKVMSQ 69
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 31.5 bits (71), Expect = 0.022
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 164 VFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223
+FVGG+ ++ +G V + D + +G + F + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 224 RFVQLQHGEID-KRVEVK 240
+ + + + E+K
Sbjct: 61 K-----YHNVGLSKCEIK 73
Score = 28.8 bits (64), Expect = 0.17
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
P E+I F FG V+ +G+ F+ F++E V+++++
Sbjct: 9 PDTPEEKIREYFGGFGE--VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 31.8 bits (72), Expect = 0.025
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELK-YPKGAGRVAFASQASY 217
+ V +P E+ + +G + + +G G V F ++
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 218 IAAISARFVQLQHGEI--DKRVEVK 240
A +A L H +R+ ++
Sbjct: 65 KKAFNA----LCHSTHLYGRRLVLE 85
Score = 29.5 bits (66), Expect = 0.15
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
+ EI F FG L K + +G+ F+ F + ++ +A
Sbjct: 18 FQANQREIRELFSTFGELKTVRLPK-KMTGTGAHRGFGFVDFITKQDAKKAFNA 70
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 31.1 bits (70), Expect = 0.036
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
+++ F ++G + + K P+G AF+ + Q+ I A
Sbjct: 16 RTITDDQLDTIFGKYGS--IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Score = 31.1 bits (70), Expect = 0.037
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 163 TVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAIS 222
++V +PR + +L I + YG + I D P+G V + + AIS
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 223 ARFVQLQHGEID---KRVEVK 240
A L + + + + V+
Sbjct: 67 A----LNNVIPEGGSQPLSVR 83
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 31.5 bits (71), Expect = 0.036
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAA 220
+TVF + ++ +L G V I +D + KG V F S A
Sbjct: 18 ARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA 76
Query: 221 ISARFVQLQHGEIDKRVEVKP 241
I +L + V+
Sbjct: 77 IGLTGQRLL----GVPIIVQA 93
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 30.9 bits (69), Expect = 0.044
Identities = 17/91 (18%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 156 MPLDPR--KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFAS 213
+P D KTVF+ + + L ++ + +G + Y + P+ ++ KG F +
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMT 59
Query: 214 QASYIAAISARFVQLQHGEID---KRVEVKP 241
Q + ++A ++ + G + ++++V
Sbjct: 60 QEAAQKCLAAASLEAEGGGLKLDGRQLKVDL 90
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 30.0 bits (67), Expect = 0.071
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 164 VFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISA 223
+F+GG+ +L + +G V + DP +G G V F S +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSK-FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 224 RFVQLQHGEIDKRVEVK 240
+ +L K ++ K
Sbjct: 61 KEHKLN----GKVIDPK 73
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 30.3 bits (68), Expect = 0.081
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASY 217
L T++VG + ++ + + G + + D K G V + S+A
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 62
Query: 218 IAAISARFVQLQHGEIDKRV 237
A+ + +D R+
Sbjct: 63 ENAMRY----INGTRLDDRI 78
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.1 bits (67), Expect = 0.11
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 157 PLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQAS 216
P +P K +++ + + +L + R + I +G + F ++
Sbjct: 14 PGEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMTGRMRGQAFITFPNKEI 72
Query: 217 YIAAISARFVQLQHGEID-KRVEVK 240
A+ + ++ K + ++
Sbjct: 73 AWQALHL----VNGYKLYGKILVIE 93
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 28.1 bits (62), Expect = 0.41
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+ TV+VGG+ + L + + G V + D +G G V F S+
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 65
Query: 219 AAISARFVQLQHGEID-KRVEVK 240
AI + ++ K + V
Sbjct: 66 YAIKI----MDMIKLYGKPIRVN 84
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 28.1 bits (62), Expect = 0.42
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
EEI + V+D A + +G+AF+ ++ +
Sbjct: 11 KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 64
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.8 bits (61), Expect = 0.63
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 154 ASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFAS 213
+ +P P T F+G +P + + + KG G F
Sbjct: 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRG-LNISAVRLPREPSNPERLKGFGYAEFED 66
Query: 214 QASYIAAISARFVQLQHGEIDKRVEVKP 241
S ++A+S L +KR+ V
Sbjct: 67 LDSLLSALSLNEESLG----NKRIRVDV 90
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 27.3 bits (60), Expect = 0.69
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
+T++VG + R + + + + + G + T+ P V F
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTSNDPY--CFVEFYEHRDAA 62
Query: 219 AAISARFVQLQHGEID-KRVEVK 240
AA++A + +I K V+V
Sbjct: 63 AALAA----MNGRKILGKEVKVN 81
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 27.3 bits (60), Expect = 0.70
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 158 LDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASY 217
+ K ++V + + + + G +K + V F+++
Sbjct: 5 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE-------RVKKIRDYAFVHFSNREDA 57
Query: 218 IAAISARFVQLQHGEID-KRVEVK 240
+ A+ A L +D +EV
Sbjct: 58 VEAMKA----LNGKVLDGSPIEVT 77
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 27.3 bits (60), Expect = 0.73
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 63 PHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
E + F +FG + +G+ F+ F D++ V +++
Sbjct: 10 WQTTQEGLREYFGQFGEVK--ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 27.1 bits (60), Expect = 1.1
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 66 DHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDA 116
++ A F ++G + KG+AF+ + +E + + +
Sbjct: 29 KKSDVEAIFSKYGKI----------VGCSVHKGFAFVQYVNERNARAAVAG 69
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.0 bits (59), Expect = 1.1
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 162 KTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAI 221
++VFVG +P +L I + V + + PKG G + Q + ++A+
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET-GKPKGYGFCEYQDQETALSAM 67
Query: 222 SARFVQLQHGEID-KRVEVKP 241
L E + + V
Sbjct: 68 RN----LNGREFSGRALRVDN 84
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 28.3 bits (62), Expect = 1.1
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 171 RPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQH 230
L+ +IMD + A P L G G AS + ++ RF+ L+
Sbjct: 150 PQLRGAYGTVIMDSRHPDTLLAARSGSP-LVIGLGMGENFIASDQLALLPVTRRFIFLEE 208
Query: 231 GEIDKRVEVKP 241
G+I E+
Sbjct: 209 GDI---AEITR 216
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 26.5 bits (58), Expect = 1.2
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 238 EVKPYVLDDQMCDECQGVRCGGKFAPFFCANVC--CLQYYCEHCWATIHSKPGREFHKPL 295
+ P D ++C C+ +F + C C Q +C C A P K +
Sbjct: 5 DTAPNWADGRVCHRCR-----VEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEV 59
Query: 296 -VKEGAYDSLQ 305
V +G + +LQ
Sbjct: 60 RVCDGCFAALQ 70
>d1yrea1 d.108.1.1 (A:11-193) Hypothetical protein PA3270
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 183
Score = 27.9 bits (61), Expect = 1.4
Identities = 17/168 (10%), Positives = 43/168 (25%), Gaps = 25/168 (14%)
Query: 132 TIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCY 191
T++ +++ P D ++ + ++ G RP + ++ G
Sbjct: 4 TLQRGALRLEPLVEADIPELVSL-AEANREALQYMDGPTRP--DWYRQSLAEQREGRALP 60
Query: 192 AGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDE 251
+ +L G FA + E+ LD
Sbjct: 61 LAVRLGVQL-----VGTTRFA----------------EFLPALPACEIGWTWLDQAQHGS 99
Query: 252 CQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHKPLVKEG 299
N+ ++ + + ++ + +EG
Sbjct: 100 GLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAID-KLGAQREG 146
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 26.5 bits (58), Expect = 1.4
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
D T+ V + + +L + +G + + D KG ++F +
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 64
Query: 219 AAISARFVQLQHGEID-KRVEVK 240
AI+ + D + V+
Sbjct: 65 RAIAG----VSGFGYDHLILNVE 83
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 26.5 bits (58), Expect = 1.8
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 155 SMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQ 214
S + +T+ + + EL + + I + KG + F S+
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFED------ALEIRLVSQDGKSKGIAYIEFKSE 63
Query: 215 ASYIAAISARFVQLQHGEID-KRVEVK 240
A + Q EID + V +
Sbjct: 64 ADAEKNLEE----KQGAEIDGRSVSLY 86
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 26.2 bits (57), Expect = 2.0
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 161 RKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAA 220
++V++ G P ++ ++ + T K KG+ V F S S
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKF 63
Query: 221 ISARFVQLQHGEIDKRVEVKP 241
+ + + + + +
Sbjct: 64 VETPGQKYK----ETDLLILF 80
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 25.9 bits (56), Expect = 2.7
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 154 ASMPLDPRKTVFVGGVPRPLKALELAMIMDRL--YGGVCYAGIDTDPELK---YPKGAGR 208
AS+ + + VFV G+ + L E+ + +G + I+ P +
Sbjct: 1 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAY 60
Query: 209 VAFASQASYIAAISARFVQLQHGEIDKRV 237
V + + AI + + +D R
Sbjct: 61 VTYIRSEDALRAIQC----VNNVVVDGRT 85
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase
{Ralstonia metallidurans [TaxId: 119219]}
Length = 174
Score = 26.6 bits (59), Expect = 2.8
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 12/46 (26%)
Query: 271 CLQYYCEHCWATIHSKPGREFH--------KPLVKEGAYDSLQTRT 308
++YC+ C +H E PL + Y S R
Sbjct: 120 GFEWYCDACGHLVHRV---EVQLKSIVTDLPPLFES-FYASEDKRR 161
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.5 bits (55), Expect = 3.8
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 160 PRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIA 219
P T+ + +P + +L ++ G V + + + S +
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-----QKDRKMALIQMGSVEEAVQ 63
Query: 220 AI 221
A+
Sbjct: 64 AL 65
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.5 bits (55), Expect = 3.8
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 155 SMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQ 214
+ V V G+ + +L + G + K V F +
Sbjct: 9 HHKVSVSPVVHVRGLCESVVEADLVEAL-------EKFGTICYVMMMPFKRQALVEFENI 61
Query: 215 ASYIAAISA 223
S ++
Sbjct: 62 DSAKECVTF 70
>d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus
subtilis [TaxId: 1423]}
Length = 180
Score = 26.3 bits (56), Expect = 4.0
Identities = 13/157 (8%), Positives = 32/157 (20%), Gaps = 27/157 (17%)
Query: 138 VQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTD 197
+ IR + DA+ + + + R ++ P A + +
Sbjct: 11 ITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDW----------- 59
Query: 198 PELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDECQGVRC 257
+ Y L G + + + ++ + +
Sbjct: 60 ----------------RRQYADLNGIEAGLLYDGSLCGMISLHNLDQVNRKAEIGYWIAK 103
Query: 258 GGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHKP 294
+ A L Y
Sbjct: 104 EFEGKGIITAACRKLITYAFEELELNRVAICAAVGNE 140
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 54
Score = 24.5 bits (53), Expect = 4.2
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 248 MCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHKP 294
+C+E +RC G C YC C+ H + H+
Sbjct: 6 ICNEDATLRCAG----------CDGDLYCARCFREGHDNFDLKEHQT 42
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 25.9 bits (57), Expect = 4.6
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 271 CLQYYCEHCWATIHSKPGREFH--------KPLVKEGAYDSLQTRT 308
+++YC HC +H E K + + + ++ RT
Sbjct: 121 KIRWYCSHCRQVVHES---ELQMLDLGTQVKEAILD-FENDVEKRT 162
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 25.6 bits (55), Expect = 5.7
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 159 DPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYI 218
D + + V +P + ++L + +R YG + I D E + +G G V F S +S
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQ 98
Query: 219 AAISARFVQLQHGEID-KRVEVK 240
AI+ L I KR++V
Sbjct: 99 QAIAG----LNGFNILNKRLKVA 117
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 24.5 bits (53), Expect = 7.4
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 233 IDKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCANVC---CLQ 273
+ V++D+MCD C+ F C V CL+
Sbjct: 2 SSGSSGPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLR 45
>d2uuyb1 g.8.1.3 (B:24-74) Tryptase inhibitor {Brown ear tick
(Rhipicephalus appendiculatus) [TaxId: 34631]}
Length = 51
Score = 23.4 bits (50), Expect = 8.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 257 CGGKFAPFFCANVCCLQYYCEHCWATIHSKPG 288
C +F ++C CC Y E C+ +S+ G
Sbjct: 15 CKARFTRYYCMGNCCKVY--EGCYTGGYSRMG 44
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 25.6 bits (55), Expect = 8.6
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 239 VKPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHK 293
V + +++ G GKF P ++ + + + H++ + +
Sbjct: 152 VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVS-HARAVKLYKD 205
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 164
Score = 25.1 bits (53), Expect = 8.9
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 129 SSPTIKDKPVQIRPWKLTDADFVLD 153
S PT++ + + +RP + D D
Sbjct: 1 SIPTLRTERLTLRPLAMADFPAYRD 25
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.0 bits (51), Expect = 9.2
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 244 LDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATI 283
+DDQ C C+ + C CE C +
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLL 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.439
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,232,806
Number of extensions: 60278
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 55
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)