BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1141
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DZV|A Chain A, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
pdb|3DZV|B Chain B, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
Length = 273
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 102 YGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTG----------NIILQNGVA 151
+GR DG PL Q + ++++AL ++ FP L TG I+LQNGV
Sbjct: 135 HGRGVDGSPLDQSEEAIEELIQALRQQTQK-FPQTVFLATGIQDVLVSQEQVIVLQNGVP 193
Query: 152 RL 153
L
Sbjct: 194 EL 195
>pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|B Chain B, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|C Chain C, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|D Chain D, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
Length = 446
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 46 FLALQHPYI-YPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGR 104
FL LQ Y+ P++DL + A RD +P S+ L +K H D K
Sbjct: 140 FLDLQARYLNVPLVDL--LGGAVRDE------VPFSAY-----LFFKYAQHVDSPYKPDN 186
Query: 105 RSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIILQNGVARLSGLENALMGYT 164
+ L Q+ +++EA F L G + ++ VA + L+ A GY
Sbjct: 187 WGEALNEQQIVAQAARMIEAYGF-------KSIKLKAGTLPPEHEVACIKALKKAFPGYP 239
Query: 165 SRIQP 169
RI P
Sbjct: 240 LRIDP 244
>pdb|2HK0|A Chain A, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Absence Of Substrate
pdb|2HK0|B Chain B, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Absence Of Substrate
pdb|2HK0|C Chain C, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Absence Of Substrate
pdb|2HK0|D Chain D, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Absence Of Substrate
pdb|2HK1|A Chain A, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Presence Of D-Fructose
pdb|2HK1|B Chain B, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Presence Of D-Fructose
pdb|2HK1|C Chain C, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Presence Of D-Fructose
pdb|2HK1|D Chain D, Crystal Structure Of D-Psicose 3-Epimerase (Dpease) In The
Presence Of D-Fructose
Length = 309
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 82 KGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILE 123
+G K IY S W ++W+ K+G + +V +LG I+E
Sbjct: 18 QGHXKHGIYYSYWEHEWSAKFGPY-----IEKVAKLGFDIIE 54
>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
Length = 649
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 16 KTERLLTLTPRSIQCVINNDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNIL 75
KT L T RSIQ ++ + S+ + +MD FL ++D+ F + A ++ L
Sbjct: 391 KTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLV-------TLIDISFAVNEAAEKKIKSL 443
Query: 76 -----VIPLSSKGSLKDLIYKSCWHNDWADKY 102
I + K S +I+ + + W ++Y
Sbjct: 444 QYLGSYIARAKKLSRTQIIFVASYLTSWLNRY 475
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 55 YPVLDLEFVEDAARDRAYNILVI-PLSSKGSLKDLIYKSC 93
YP+ D E V+ A R+ +NI V +S SL D+ + +C
Sbjct: 63 YPMTDAERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNC 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,528,549
Number of Sequences: 62578
Number of extensions: 210689
Number of successful extensions: 444
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)