RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1141
(189 letters)
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 45.3 bits (108), Expect = 3e-06
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 24/107 (22%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
L HP I + D + LV+ GSLKDL+
Sbjct: 48 LNHPNIVKLYG------VFEDENHLYLVMEYCEGGSLKDLLK-------------ENEGK 88
Query: 109 LPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIILQNGVARL 153
L ++ R+ QILE L +L G H L NI+L + ++
Sbjct: 89 LSEDEILRILLQILEGLEYLHSNGI---IHRDLKPENILLDSDNGKV 132
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 44.5 bits (106), Expect = 8e-06
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 31 VINNDSETRKSIM---DLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKD 87
+ + E +++ + +LQHP I E E+ NI + S GSL
Sbjct: 35 LSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEE---KNTLNIF-LEYVSGGSLSS 90
Query: 88 LIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNII 145
L+ K+G+ LP +++ RQILE L +L G H + NI+
Sbjct: 91 LL----------KKFGK----LPEPVIRKYTRQILEGLAYLHSNGI---VHRDIKGANIL 133
Query: 146 L-QNGVARLS 154
+ +GV +L+
Sbjct: 134 VDSDGVVKLA 143
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 39.1 bits (92), Expect = 6e-04
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 26/115 (22%)
Query: 43 MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKY 102
+ + L+HP I + D+ ED LV+ G L DL+
Sbjct: 48 IKILKKLKHPNIVRLYDVFEDED------KLYLVMEYCEGGDLFDLL------------- 88
Query: 103 GRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGVARLS 154
++ L + + RQIL AL +L +G H L NI+L ++G +L+
Sbjct: 89 -KKRGRLSEDEARFYLRQILSALEYLHSKGI---VHRDLKPENILLDEDGHVKLA 139
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 38.0 bits (89), Expect = 0.001
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
L HP I ++D A D+ + LV+ G L D + R
Sbjct: 55 LSHPNIVRLID------AFEDKDHLYLVMEYCEGGDLFDYL--------------SRGGP 94
Query: 109 LPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGVARLS 154
L + +++ QIL L +L G H L NI+L +NGV +++
Sbjct: 95 LSEDEAKKIALQILRGLEYLHSNGI---IHRDLKPENILLDENGVVKIA 140
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 37.2 bits (87), Expect = 0.002
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 31 VINNDSETRKSIM---DLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKD 87
+ E KSIM DL L+HP I + +E + I ++ + GSL+
Sbjct: 35 LEKIKEEALKSIMQEIDLLKNLKHPNIVKYIG--SIET---SDSLYI-ILEYAENGSLRQ 88
Query: 88 LIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERG 132
+I ++ P S V Q+L+ L +L E+G
Sbjct: 89 II--------------KKFGPFPESLVAVYVYQVLQGLAYLHEQG 119
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 32.1 bits (73), Expect = 0.13
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
Query: 102 YGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLH----TGNIILQNGVARLSGLE 157
Y RS LPL Q + R++LEAL +L RG +H T NI L E
Sbjct: 175 YVDRSGPLPLEQAITIQRRLLEALAYLHGRGI-----IHRDVKTENIFLDEP-------E 222
Query: 158 NALMG 162
NA++G
Sbjct: 223 NAVLG 227
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 32.0 bits (73), Expect = 0.17
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 119 RQILEALVFLKERGFPPCCHLHTGNIILQNGVARLSGLENAL 160
R + E L CCH GN L V L +
Sbjct: 1235 RLLAEVYAELVAENGVACCHHTCGNPALDEWVLGLVSVPGVP 1276
>gnl|CDD|107291 cd06296, PBP1_CatR_like, Ligand-binding domain of a LacI-like
transcriptional regulator, CatR which is involved in
catechol degradation. This group includes the
ligand-binding domain of a LacI-like transcriptional
regulator, CatR which is involved in catechol
degradation. This group belongs to the the LacI-GalR
family repressors that are composed of two functional
domains: an N-terminal HTH (helix-turn-helix) domain,
which is responsible for the DNA-binding specificity,
and a C-terminal ligand-binding domain, which is
homologous to the sugar-binding domain of ABC-type
transport systems that contain the type I periplasmic
binding protein-like fold. As also observed in the
periplasmic binding proteins, the C-terminal domain of
the bacterial transcription repressor undergoes a
conformational change upon ligand binding which in turn
changes the DNA binding affinity of the repressor.
Length = 270
Score = 30.7 bits (70), Expect = 0.37
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 45 LFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKY-G 103
+F L P+ VL VE+AA Y++++ + S W ++
Sbjct: 5 VFPDLDSPWASEVL--RGVEEAAAAAGYDVVLSESGRRTS---------PERQWVERLSA 53
Query: 104 RRSDGLPLSQVQRLGRQILEALVFLKERGFP 134
RR+DG+ + L A L+ G P
Sbjct: 54 RRTDGV-ILVTPELTSAQRAA---LRRTGIP 80
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 31.0 bits (70), Expect = 0.37
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 45 LFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGR 104
L L HP + +LD+ V LV+P + +D G
Sbjct: 213 LLRRLSHPAVLALLDVRVVG------GLTCLVLPK--------------YRSDLYTYLGA 252
Query: 105 RSDGLPLSQVQRLGRQILEALVFLKERG 132
R L L+QV + RQ+L A+ ++ G
Sbjct: 253 RLRPLGLAQVTAVARQLLSAIDYIHGEG 280
>gnl|CDD|217950 pfam04187, DUF399, Protein of unknown function, DUF399. No
function is known for any member of this family.
Length = 213
Score = 29.5 bits (67), Expect = 0.86
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 85 LKDLIYKSCWHNDWAD-----KYGRRSD------GLPLSQVQRLGRQILEALVFLKERGF 133
L+ L ++ W NDW+ ++ R + LP S V+ + R+ LE+L ER
Sbjct: 74 LEALDWQKGWPNDWSLYRPLVEFAREARLPLIAANLPRSIVRAVAREGLESL-PEAERAR 132
Query: 134 PP 135
P
Sbjct: 133 LP 134
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 29.5 bits (67), Expect = 0.92
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 23/85 (27%)
Query: 75 LVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFP 134
+V+ S GSLKDL+ KS L SQ+ + +++L+ L +L G
Sbjct: 74 IVMEFCSGGSLKDLL-KSTNQ------------TLTESQIAYVCKELLKGLEYLHSNGI- 119
Query: 135 PCCHLH----TGNIIL-QNGVARLS 154
+H NI+L +G +L
Sbjct: 120 ----IHRDIKAANILLTSDGEVKLI 140
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 29.3 bits (66), Expect = 1.0
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 36/136 (26%)
Query: 30 CVINNDSETRKSI------MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKG 83
+ ++ ++++ + L LQHP I L E ED I + L G
Sbjct: 34 SLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDN-----LYIF-LELVPGG 87
Query: 84 SLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHT-- 141
SL L+ ++ P ++ RQIL L +L +R +H
Sbjct: 88 SLAKLL--------------KKYGSFPEPVIRLYTRQILLGLEYLHDRNT-----VHRDI 128
Query: 142 --GNIILQ-NGVARLS 154
NI++ NGV +L+
Sbjct: 129 KGANILVDTNGVVKLA 144
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 28.6 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 35 DSETRKSIMDLFLALQHPYIYPVL----DLEFVEDAARDRAYNI 74
DSET K +M+L L ++ D E E A DR +
Sbjct: 172 DSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYA--DRIIEL 213
>gnl|CDD|219125 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus. This
family represents the C-terminus of D-glucuronyl
C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases
catalyze the conversion of D-glucuronic acid (GlcUA) to
L-iduronic acid (IdceA) units during the biosynthesis
of glycosaminoglycans.
Length = 189
Score = 28.1 bits (63), Expect = 2.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 65 DAARDRAYNILVIPLSSKGSLKDLIYKSCW 94
DAA +A N ++P+ G L + K W
Sbjct: 53 DAA-KKALNSFLVPVEKGGVLDTFMDKYPW 81
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 28.0 bits (63), Expect = 2.8
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 48 ALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSD 107
A QHPY+ +LD V P GS L+ + D ++
Sbjct: 55 ACQHPYVVKLLD----------------VFP---HGSGFVLVMEYMPS-DLSEVLRDEER 94
Query: 108 GLPLSQVQRLGRQILEALVFLKERG 132
LP +QV+ R +L+ + ++ G
Sbjct: 95 PLPEAQVKSYMRMLLKGVAYMHANG 119
>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain,
repeat 2. MyoX, a MyTH-FERM myosin, is a molecular
motor that has crucial functions in the transport
and/or tethering of integrins in the actin-based
extensions known as filopodia, microtubule binding, and
in netrin-mediated axon guidance. It functions as a
dimer. MyoX walks on bundles of actin, rather than
single filaments, unlike the other unconventional
myosins. MyoX is present in organisms ranging from
humans to choanoflagellates, but not in Drosophila and
Caenorhabditis elegans.MyoX consists of a N-terminal
motor/head region, a neck made of 3 IQ motifs, and a
tail consisting of a coiled-coil domain, a PEST region,
3 PH domains, a myosin tail homology 4 (MyTH4), and a
FERM domain at its very C-terminus. The first PH domain
in the MyoX tail is a split-PH domain, interupted by
the second PH domain such that PH 1a and PH 1b flanks
PH 2. The third PH domain (PH 3) follows the PH 1b
domain. This cd contains the second PH repeat. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from
other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 111
Score = 27.0 bits (60), Expect = 2.9
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 5 KHWFVVKDSSVK-------TERLL-TLTPRSIQCVINND-SETRKSI 42
WFV++D+ +K + L T+ RS + +++N E I
Sbjct: 30 SRWFVLRDTVLKYYENDQEGAKALGTIDIRSAKEIVDNTPKENGFDI 76
>gnl|CDD|222785 PHA00368, PHA00368, internal virion protein D.
Length = 1315
Score = 28.2 bits (63), Expect = 3.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 40 KSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNI 74
K+ +D FL H + E VE A D+AY I
Sbjct: 702 KARVDEFLKELHGIDVKEVTPEMVEKYAMDKAYGI 736
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 27.8 bits (62), Expect = 3.6
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 25/115 (21%)
Query: 43 MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKY 102
+D+ +HP I + + F E+ ++I G+L ++ +
Sbjct: 53 IDILSECKHPNIVGLYEAYFYENKL------WILIEFCDGGALDSIM----------LEL 96
Query: 103 GRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGVARLS 154
R GL Q++ + RQ+LEAL FL H L GNI+L +G +L+
Sbjct: 97 ER---GLTEPQIRYVCRQMLEALNFLHSHKV---IHRDLKAGNILLTLDGDVKLA 145
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 27.7 bits (62), Expect = 4.0
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 6/27 (22%)
Query: 150 VARLSGLE-----NALMGYTSRIQPMI 171
+ARL LE NALMG+T R+Q I
Sbjct: 135 IARLDALEATFGQNALMGHT-RMQAAI 160
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spindle pole
body (SPB) functions as the microtubule-organising
centre in yeast. Members of this family are spindle pole
body (SBP) components such as Spc97 and Spc98 that form
a complex with gamma-tubulin. This family of proteins
includes the grip motif 1 and grip moti 2.
Length = 528
Score = 27.5 bits (61), Expect = 5.1
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 97 DWADKYGRRSDGLPLSQVQRLGRQILEA---LVFLKERGFPPCCHLHT 141
W ++Y R D LP + L R+ILE L FL+E CC H
Sbjct: 209 YWEERYTLREDMLPSFLPKELARKILEIGKSLNFLRE-----CCKSHP 251
>gnl|CDD|220453 pfam09875, DUF2102, Uncharacterized protein conserved in archaea
(DUF2102). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 104
Score = 25.7 bits (57), Expect = 7.6
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 126 VFLKERGFPP 135
+F+K+RGFPP
Sbjct: 59 IFIKDRGFPP 68
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 26.7 bits (60), Expect = 7.9
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 11/38 (28%)
Query: 108 GLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNII 145
L + ++ + Q+L L + H+ I+
Sbjct: 94 PLSPNLIKSIMYQLLRGL-----------AYCHSHRIL 120
>gnl|CDD|185082 PRK15128, PRK15128, 23S rRNA m(5)C1962 methyltransferase;
Provisional.
Length = 396
Score = 26.7 bits (59), Expect = 8.1
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 69 DRAYNILVIPLSSKG---------SLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGR 119
DR N LV+ L S G S +Y C D +D R+ +G+ L+Q G
Sbjct: 118 DRFGNFLVLQLLSAGAEYQRAALISALQTLYPECAIYDRSDVAVRKKEGMELTQGPVTG- 176
Query: 120 QILEALVFLKERG 132
++ AL+ ++E G
Sbjct: 177 ELPPALLPIEEHG 189
>gnl|CDD|236472 PRK09347, folE, GTP cyclohydrolase I; Provisional.
Length = 188
Score = 26.3 bits (59), Expect = 8.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 100 DKYGRRSDGLPLSQVQ-RLGRQILEALVF-LKERG 132
D + RR P QVQ RL QI +AL L RG
Sbjct: 111 DFFARR----P--QVQERLTAQIADALQEILGPRG 139
>gnl|CDD|149795 pfam08849, DUF1819, Putative inner membrane protein (DUF1819).
These proteins are functionally uncharacterized. Several
are annotated as putative inner membrane proteins.
Length = 191
Score = 26.1 bits (58), Expect = 9.2
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 19 RLLTLTPRSIQCVINNDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYN 73
RL TL ++ + E K ++ + + +F+ + R+R
Sbjct: 63 RLETLDEEELRLLAEGSREEAKQLLWAAACRHYRLVA-----DFMVEVVRERFRQ 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,526,498
Number of extensions: 880749
Number of successful extensions: 830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 31
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)