RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1141
(189 letters)
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 44.6 bits (106), Expect = 4e-06
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 27/135 (20%)
Query: 30 CVINNDSETRKSI------MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKG 83
C + + T+ ++ LQHP I V + E + + +LV L + G
Sbjct: 57 CELQDRKLTKSERQRFKEEAEMLKGLQHPNI--VRFYDSWESTVKGKKCIVLVTELMTSG 114
Query: 84 SLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHT 141
+LK + ++ + + ++ RQIL+ L FL R PP H L
Sbjct: 115 TLKTYL----------KRFKV----MKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKC 159
Query: 142 GNIILQ--NGVARLS 154
NI + G ++
Sbjct: 160 DNIFITGPTGSVKIG 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 9e-04
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 41/146 (28%)
Query: 49 LQHPY-IYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIY-KSCWHNDWADKYGRRS 106
L+ Y Y VL + ++ +A + L + ++ + +W +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAE------TLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 107 DG---------LPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIILQNGVARLSGLE 157
D PL V Q+ +V K GF P G + + L G
Sbjct: 227 DKDYLLSIPISCPLIGVI----QLAHYVVTAKLLGFTP------GEL-----RSYLKGA- 270
Query: 158 NALMGYTSRIQPMICKSHHVIADSTS 183
T Q ++ + IA++ S
Sbjct: 271 ------TGHSQGLV--TAVAIAETDS 288
Score = 37.7 bits (87), Expect = 0.002
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 28/105 (26%)
Query: 70 RAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLP---LSQVQRLGRQILEALV 126
AY +P S I + N+ +G+P LS + L ++ ++ V
Sbjct: 312 EAYPNTSLPPS--------ILEDSLENN---------EGVPSPMLS-ISNLTQEQVQDYV 353
Query: 127 FLKERGFPPCCHLHTGNIILQNGVAR---LSGLENALMGYTSRIQ 168
P + I L NG A+ +SG +L G ++
Sbjct: 354 NKTNSHLPAGKQVE---ISLVNG-AKNLVVSGPPQSLYGLNLTLR 394
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 37.1 bits (86), Expect = 0.002
Identities = 26/130 (20%), Positives = 39/130 (30%), Gaps = 40/130 (30%)
Query: 48 ALQHPYIYPVLDLEFVEDAARD---RAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGR 104
+ HP I + + FVE R Y +V+ SLK
Sbjct: 135 EVVHPSIVQIFN--FVEHTDRHGDPVGY--IVMEYVGGQSLKRSK--------------- 175
Query: 105 RSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHT----GNIILQN--------GVAR 152
LP+++ +IL AL +L G ++ NI+L G
Sbjct: 176 -GQKLPVAEAIAYLLEILPALSYLHSIGL-----VYNDLKPENIMLTEEQLKLIDLGAVS 229
Query: 153 LSGLENALMG 162
L G
Sbjct: 230 RINSFGYLYG 239
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 35.8 bits (83), Expect = 0.005
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 108 GLPLSQVQRLGRQILEALVFLKERGFPPCCHL-HTG----NIILQNGVARLSGLENALMG 162
G + ++ +IL+AL +L++ L HT NI+L + S + +
Sbjct: 133 GFHIEDIKLYCIEILKALNYLRK------MSLTHTDLKPENILLDDPYFEKSLITVRRVT 186
Query: 163 YTSRIQPMICKSHHV 177
+IQ KS +
Sbjct: 187 DGKKIQIYRTKSTGI 201
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 35.7 bits (83), Expect = 0.006
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 108 GLPLSQVQRLGRQILEALVFLKE 130
L ++++ QI +++ FL
Sbjct: 114 PFRLDHIRKMAYQICKSVNFLHS 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.007
Identities = 33/203 (16%), Positives = 64/203 (31%), Gaps = 52/203 (25%)
Query: 7 WFVVKDSSVKTERLLT-LTPRSIQCVINNDSETRKSIMDLFLALQHPYIYPVLDLEFVED 65
WF V S V ++ L S V E+ SI ++L L+ + + +
Sbjct: 396 WFDVIKSDV--MVVVNKLHKYS--LVEKQPKESTISIPSIYLELKV----KLENEYALHR 447
Query: 66 AARDRAYNILVIPLSSKGSLKDLIYKSCWHN---DWADKY-----GRRSDGLPLSQVQRL 117
+ D YNI + + D+Y G + + L
Sbjct: 448 SIVDH-YNIP--------------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 118 GRQILEALVFLKER----GFPPCCHLHTGNIILQ---------NGVARLSGLENALMGYT 164
R + FL+++ N + Q + + L NA++ +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 165 SRIQPMICKSHHVIADSTSTDII 187
+I+ + S + TD++
Sbjct: 553 PKIEENLICSKY-------TDLL 568
Score = 29.4 bits (65), Expect = 0.89
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 68/211 (32%)
Query: 5 KHWFVVKDSSVKTERLLTLTPRSIQCVINNDSETRKSIMDLFLALQHPYIY--------- 55
H + KD+ T RL +++ E + ++ L + + ++
Sbjct: 52 DHIIMSKDAVSGTLRLFW-------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 56 PVLDLEFVEDAARDRAYNILVIPLSSKGS-------------LKDL-------IY----- 90
P + + RDR YN + +K + L +L I
Sbjct: 105 PSMMTRMYIEQ-RDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 91 -KSCWHND----------------WADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGF 133
K+ D W + S L +Q+L QI +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 134 PPCCHLHTGNIILQNGVARL---SGLENALM 161
+H+ +Q + RL EN L+
Sbjct: 222 NIKLRIHS----IQAELRRLLKSKPYENCLL 248
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 35.0 bits (81), Expect = 0.009
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 108 GLPLSQVQRLGRQILEALVFLKERGFPPCCHL-HTG----NIILQNGVARLSGLENALMG 162
PL V+ + Q+ AL FL E L HT NI+ N E+
Sbjct: 119 PYPLPHVRHMAYQLCHALRFLHE------NQLTHTDLKPENILFVNSEFETLYNEHKSCE 172
Query: 163 YTSRIQPMI 171
S I
Sbjct: 173 EKSVKNTSI 181
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 34.7 bits (79), Expect = 0.016
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 16/103 (15%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
L HP + ++ +L + G L+ + + G
Sbjct: 69 LNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQF-----------ENCCG 117
Query: 109 LPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIILQNG 149
L ++ L I AL +L E H L NI+LQ G
Sbjct: 118 LKEGPIRTLLSDISSALRYLHENRI---IHRDLKPENIVLQPG 157
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 33.9 bits (78), Expect = 0.021
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 108 GLPLSQVQRLGRQILEALVFLKERG 132
G L V++ IL+ L L +
Sbjct: 196 GFSLPLVRKFAHSILQCLDALHKNR 220
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 34.0 bits (78), Expect = 0.021
Identities = 16/109 (14%), Positives = 27/109 (24%), Gaps = 28/109 (25%)
Query: 48 ALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSD 107
+ P + VLD V R +V GSL+++
Sbjct: 87 RIDKPGVARVLD--VVHT--RAGGL--VVAEWIRGGSLQEVA----------------DT 124
Query: 108 GLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGVARL 153
R + + A G H + + +G L
Sbjct: 125 SPSPVGAIRAMQSLAAAADAAHRAGVA---LSIDHPSRVRVSIDGDVVL 170
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 33.5 bits (76), Expect = 0.032
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 15/125 (12%)
Query: 34 NDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSC 93
++ + F ++ P ++ + D + + + +L+
Sbjct: 142 KQAKVHLRFIFPFDLVKDPQKKKMIRV--RLDERDMWVLSRFFLYPRMQSNLQTFG---- 195
Query: 94 WHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGV 150
+ + L +L Q++ L L G H L +I+L Q G
Sbjct: 196 ---EVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGL---VHTYLRPVDIVLDQRGG 249
Query: 151 ARLSG 155
L+G
Sbjct: 250 VFLTG 254
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 33.1 bits (76), Expect = 0.044
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 108 GLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTG----NIILQN 148
G+ L+ ++ +Q+ AL+FL P +H NI+L N
Sbjct: 153 GVSLNLTRKFAQQMCTALLFLAT---PELSIIHCDLKPENILLCN 194
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 32.8 bits (75), Expect = 0.050
Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 20/90 (22%)
Query: 43 MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKY 102
+ L P I P+ NI + L GSL LI +
Sbjct: 101 LVACAGLSSPRIVPLYGAVREGP-----WVNI-FMELLEGGSLGQLI----------KQM 144
Query: 103 GRRSDGLPLSQVQRLGRQILEALVFLKERG 132
G LP + Q LE L +L R
Sbjct: 145 GC----LPEDRALYYLGQALEGLEYLHTRR 170
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 32.4 bits (74), Expect = 0.079
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 72 YNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKER 131
Y LV+P + SL+ + D + L V ++ ++L+AL FL E
Sbjct: 132 YRFLVLPSLGR-SLQSAL----------DVSPKHV--LSERSVLQVACRLLDALEFLHEN 178
Query: 132 GF 133
+
Sbjct: 179 EY 180
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 31.6 bits (72), Expect = 0.12
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 108 GLPLSQVQRLGRQILEALVFL 128
G+PL V+++ +Q+L L ++
Sbjct: 127 GIPLIYVKQISKQLLLGLDYM 147
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 31.4 bits (71), Expect = 0.14
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 88 LIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIILQ 147
++++ H+ GLPL V+++ +Q+L+ L +L + + NI+L
Sbjct: 122 MVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS 181
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural
genomics consortium, TBSG domain, signal transduction;
HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB:
3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A*
3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Length = 311
Score = 31.1 bits (71), Expect = 0.16
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 16/78 (20%)
Query: 48 ALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSD 107
AL HP I V D E A Y +V+ +L+D++ G
Sbjct: 68 ALNHPAIVAVYDTGEAETPAGPLPY--IVMEYVDGVTLRDIV----------HTEGP--- 112
Query: 108 GLPLSQVQRLGRQILEAL 125
+ + + +AL
Sbjct: 113 -MTPKRAIEVIADACQAL 129
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 30.5 bits (69), Expect = 0.33
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 68 RDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVF 127
++Y +++ L+ + Y++ +R V +L +IL+ L +
Sbjct: 122 NGKSYRFMIMDRFGS-DLQKI-YEAN---------AKR---FSRKTVLQLSLRILDILEY 167
Query: 128 LKERGF 133
+ E +
Sbjct: 168 IHEHEY 173
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 29.7 bits (67), Expect = 0.46
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 68 RDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVF 127
+ R+Y +V+ L+ + + G S V +LG ++L+ L +
Sbjct: 122 KGRSYRFMVMERLGI-DLQKIS----------GQNGT----FKKSTVLQLGIRMLDVLEY 166
Query: 128 LKERGF 133
+ E +
Sbjct: 167 IHENEY 172
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 29.2 bits (66), Expect = 0.70
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 20/88 (22%)
Query: 83 GSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLH-- 140
GSL D I + R ++++ L Q+ L ++ +H
Sbjct: 96 GSLADAI----------SENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSL-----VHMD 140
Query: 141 --TGNIIL-QNGVARLSGLENALMGYTS 165
NI + + + + E + S
Sbjct: 141 IKPSNIFISRTSIPNAASEEGDEDDWAS 168
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 29.3 bits (66), Expect = 0.79
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 30/127 (23%)
Query: 34 NDSETRKSI--MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYK 91
+ E +S + + ++HP I +++ E + + I V+ G L I
Sbjct: 63 SSKEREESRREVAVLANMKHPNI-----VQYRESFEENGSLYI-VMDYCEGGDLFKRINA 116
Query: 92 SCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLH----TGNIIL- 146
++ Q+ QI AL + +R LH + NI L
Sbjct: 117 ------------QKGVLFQEDQILDWFVQICLALKHVHDRKI-----LHRDIKSQNIFLT 159
Query: 147 QNGVARL 153
++G +L
Sbjct: 160 KDGTVQL 166
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 0.89
Identities = 4/19 (21%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 172 CKSH--HVIADSTSTDIIC 188
CK + ++ + D++C
Sbjct: 27 CKVYPPKIVERFSEGDVVC 45
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 29.2 bits (65), Expect = 0.91
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 18/116 (15%)
Query: 43 MDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKY 102
DL Q + D + + + +L+ + +
Sbjct: 149 FDLVKDPQKKKMI-----RVRLDERDMWVLSRFFLYPRMQSNLQTFG-------EVLLSH 196
Query: 103 GRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGVARLSG 155
L +L Q++ L L G H L +I+L Q G L+G
Sbjct: 197 SSTHKSLVHHARLQLTLQVIRLLASLHHYGL---VHTYLRPVDIVLDQRGGVFLTG 249
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 29.0 bits (65), Expect = 1.0
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 51 HPYIYPVLDLEFVEDAARDR-AYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGL 109
HP I + D L++ KG L + + K L
Sbjct: 85 HPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKM-----------ESRGPL 133
Query: 110 PLSQVQRLGRQILEALVFLKERGFPPCCH--LHTGNIIL-QNGVARL 153
V ++ Q A+ + + PP H L N++L G +L
Sbjct: 134 SCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKL 179
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 28.5 bits (64), Expect = 1.1
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 68 RDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVF 127
++ +N+LVI L SL+DL+ D GR+ + V +Q+L +
Sbjct: 76 QEGLHNVLVIDLLGP-SLEDLL----------DLCGRK---FSVKTVAMAAKQMLARVQS 121
Query: 128 LKERGF 133
+ E+
Sbjct: 122 IHEKSL 127
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 28.4 bits (64), Expect = 1.5
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 29/127 (22%)
Query: 35 DSETRKSIM---DLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYK 91
D++ R + DL L HP + +++ D NI V+ L+ G L +I
Sbjct: 72 DAKARADCIKEIDLLKQLNHPNV-----IKYYASFIEDNELNI-VLELADAGDLSRMI-- 123
Query: 92 SCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLH----TGNIIL- 146
+ ++ +P V + Q+ AL + R +H N+ +
Sbjct: 124 --------KHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRV-----MHRDIKPANVFIT 170
Query: 147 QNGVARL 153
GV +L
Sbjct: 171 ATGVVKL 177
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 28.1 bits (63), Expect = 2.0
Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 31 VINNDSETRKSI---MDLFLALQHPYI------YPVLDLEFVEDAARDRAYNI-LVIPLS 80
I + E +I + L +L H Y+ + A + + + +
Sbjct: 38 KIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYC 97
Query: 81 SKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH-- 138
G+L DLI+ + + RL RQILEAL ++ +G H
Sbjct: 98 ENGTLYDLIHS-------------ENLNQQRDEYWRLFRQILEALSYIHSQGI---IHRD 141
Query: 139 LHTGNIIL-QNGVARLS--GL 156
L NI + ++ ++ GL
Sbjct: 142 LKPMNIFIDESRNVKIGDFGL 162
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 27.7 bits (62), Expect = 2.0
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 68 RDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVF 127
YN +V+ L SL+DL + C R L V + Q++ + +
Sbjct: 75 PCGKYNAMVLELLGP-SLEDL-FDLC---------DRT---FSLKTVLMIAIQLISRMEY 120
Query: 128 LKERGF 133
+ +
Sbjct: 121 VHSKNL 126
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 28.0 bits (63), Expect = 2.1
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 20/78 (25%)
Query: 48 ALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSD 107
LQ P++ P+ D F E + Y + + L + L ++ RR
Sbjct: 90 RLQEPHVVPIHD--FGEID--GQLY--VDMRLINGVDLAAML--------------RRQG 129
Query: 108 GLPLSQVQRLGRQILEAL 125
L + + RQI AL
Sbjct: 130 PLAPPRAVAIVRQIGSAL 147
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel,
structural genomics, joint for structural genomics,
JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Length = 301
Score = 27.7 bits (61), Expect = 2.2
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 79 LSSKGSLKDLIYKSCWHNDWADKYGRRSD--GLPLSQVQRLGRQILEALVFLKERGFPPC 136
L + + ++ + + +D D + + + + + G
Sbjct: 99 LKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVA 158
Query: 137 CHLHTGNII 145
H H G I
Sbjct: 159 YHHHMGTGI 167
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 27.2 bits (61), Expect = 2.8
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 48 ALQHPYIYPVLDLEFVEDAARDRAYNILVIPL 79
+ P I + E A+ + ++ +
Sbjct: 159 DIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM 190
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 27.5 bits (61), Expect = 2.9
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 22/65 (33%)
Query: 81 SKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLH 140
K +LKD + + + QI EA+ LH
Sbjct: 144 RKENLKDWM-----------NRRCSLEDREHGVCLHIFIQIAEAV-----------EFLH 181
Query: 141 TGNII 145
+ ++
Sbjct: 182 SKGLM 186
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 26.9 bits (60), Expect = 3.9
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 68 RDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVF 127
+ YN++V+ L SL+DL + C R+ L V L Q++ + +
Sbjct: 75 AEGDYNVMVMELLGP-SLEDL-FNFC---------SRK---FSLKTVLLLADQMISRIEY 120
Query: 128 LKERGF 133
+ + F
Sbjct: 121 IHSKNF 126
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus
subsp}
Length = 294
Score = 26.8 bits (60), Expect = 4.5
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 48 ALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSD 107
L H I ++D E+ D Y LV+ +L + I + +G
Sbjct: 67 QLSHQNIVSMID--VDEE--DDCYY--LVMEYIEGPTLSEYI----------ESHGP--- 107
Query: 108 GLPLSQVQRLGRQILEAL 125
L + QIL+ +
Sbjct: 108 -LSVDTAINFTNQILDGI 124
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 26.5 bits (59), Expect = 5.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 36 SETRKSIMDLFLALQHPYIYPVL 58
S TRK++M + YP
Sbjct: 85 SHTRKAVMPVVERADALLCYPTP 107
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 26.3 bits (58), Expect = 6.1
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 21/92 (22%)
Query: 81 SKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCH-- 138
L + K + + + + +LEA+ + + G H
Sbjct: 138 GNIDLNSWLKK----------KKS----IDPWERKSYWKNMLEAVHTIHQHGI---VHSD 180
Query: 139 LHTGNIILQNGVARLS--GLENALMGYTSRIQ 168
L N ++ +G+ +L G+ N + T+ +
Sbjct: 181 LKPANFLIVDGMLKLIDFGIANQMQPDTTSVV 212
>3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint
center for structural genomics, JCSG; HET: MSE; 1.85A
{Parabacteroides distasonis atcc 8503}
Length = 393
Score = 26.0 bits (56), Expect = 8.9
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 56 PVLDLEFVEDAARDRAYNILVIP-----LSSKGSLKDLIYKSCWHNDWADKYGRRSDGLP 110
D + V D +R YN + I ++ K L+ + DW P
Sbjct: 35 GYEDWDQVLDELSERGYNAIRIDAYPHLIAENPMKKWLLKEVWNQQDWGSPDMNEVQVQP 94
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 26.0 bits (58), Expect = 9.0
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 11/42 (26%)
Query: 104 RRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNII 145
+GL VQ+ QI+ + F CH H NII
Sbjct: 116 LFPNGLDYQVVQKYLFQIINGIGF---------CHSH--NII 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,907,355
Number of extensions: 166053
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 52
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)