RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1141
(189 letters)
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 50.9 bits (121), Expect = 1e-08
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%)
Query: 31 VINNDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIY 90
++ + + R+ + + A Q P+I ++D E+ R ++V+ G L I
Sbjct: 44 MLQDCPKARREVELHWRASQCPHIVRIVD--VYENLYAGRKCLLIVMECLDGGELFSRIQ 101
Query: 91 KSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIIL---- 146
R + + + I EA+ +L + N++
Sbjct: 102 D------------RGDQAFTEREASEIMKSIGEAIQYLHSINI-AHRDVKPENLLYTSKR 148
Query: 147 QNGVARLSGLENALMGYTSRIQPMICKSHHVIA 179
N + +L+ A + C + + +A
Sbjct: 149 PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA 181
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 43.6 bits (102), Expect = 4e-06
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 31 VINNDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIY 90
+ D + + + L H I + + +D Y LV L Y
Sbjct: 52 KVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV-----------LDY 100
Query: 91 KSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGF 133
A Y R LP+ V+ Q+ +L ++ G
Sbjct: 101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 143
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 277
Score = 37.8 bits (87), Expect = 4e-04
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 31 VINNDSETRKSIMDLFLA-------LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKG 83
V+ D S F L HP I V D E A Y +V+
Sbjct: 39 VLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY--IVMEYVDGV 96
Query: 84 SLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGN 143
+L+D++ + + + +AL F + G + N
Sbjct: 97 TLRDIV--------------HTEGPMTPKRAIEVIADACQALNFSHQNGI-IHRDVKPAN 141
Query: 144 IIL 146
I++
Sbjct: 142 IMI 144
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 35.4 bits (81), Expect = 0.002
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 22/100 (22%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
++P I LD + +V+ + GSL D++ ++C
Sbjct: 74 NKNPNIVNYLD------SYLVGDELWVVMEYLAGGSLTDVVTETCM-------------- 113
Query: 109 LPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIILQN 148
Q+ + R+ L+AL FL + + NI+L
Sbjct: 114 -DEGQIAAVCRECLQALEFLHSNQV-IHRDIKSDNILLGM 151
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 35.4 bits (81), Expect = 0.002
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 21/107 (19%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
PYI A + + GSL ++ +++
Sbjct: 61 CNSPYIVGFYG------AFYSDGEISICMEHMDGGSLDQVL--------------KKAGR 100
Query: 109 LPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIIL-QNGVARLS 154
+P + ++ +++ L +L+E+ + NI++ G +L
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLC 147
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 276
Score = 33.4 bits (76), Expect = 0.010
Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 30/141 (21%)
Query: 15 VKTERLLTLTPRSIQCVINNDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNI 74
VK + TP+ +Q N + + +H I +L + +
Sbjct: 35 VKMLNVTAPTPQQLQAFKNE--------VGVLRKTRHVNI--LLFMGYSTAPQL-----A 79
Query: 75 LVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDGLPLSQVQRLGRQILEALVFLKERGFP 134
+V SL ++ + ++ + RQ + + +L +
Sbjct: 80 IVTQWCEGSSLYHHLHI-------------IETKFEMIKLIDIARQTAQGMDYLHAKSI- 125
Query: 135 PCCHLHTGNIIL-QNGVARLS 154
L + NI L ++ ++
Sbjct: 126 IHRDLKSNNIFLHEDLTVKIG 146
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 32.4 bits (73), Expect = 0.021
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
L +PYI ++ + A +LV+ ++ G L +
Sbjct: 66 LDNPYIVRLIG--VCQAEAL-----MLVMEMAGGGPLHKFLVGKREE------------- 105
Query: 109 LPLSQVQRLGRQILEALVFLKERGFPPCCHLHTGNIIL-QNGVARLS 154
+P+S V L Q+ + +L+E+ F L N++L A++S
Sbjct: 106 IPVSNVAELLHQVSMGMKYLEEKNF-VHRDLAARNVLLVNRHYAKIS 151
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 29.8 bits (66), Expect = 0.17
Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 27/150 (18%)
Query: 49 LQHPYIYPVLDLEFVEDAARDRAYNILVIPLSSKGSLKDLIYKSCWHNDWADKYGRRSDG 108
++H + +LD+ ++ D LV+P G+ + K +
Sbjct: 74 MRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLMK--------------HEK 117
Query: 109 LPLSQVQRLGRQILEALVFLKERGFP-----PCCHLHTGNIILQNGVARLSGLENALMGY 163
L ++Q L Q+L+ L ++ G P + L+ L+ ++ M
Sbjct: 118 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM-- 175
Query: 164 TSRIQPMICKSHHVIA----DSTSTDIICF 189
T + ++ VI + + DI
Sbjct: 176 TGYVVTRWYRAPEVILNWMRYTQTVDIWSV 205
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 72
Score = 25.8 bits (57), Expect = 1.0
Identities = 8/24 (33%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 140 HTGNII-LQNGVARLSGLENALMG 162
+TG ++ + +G+AR+ GL+ + G
Sbjct: 4 NTGTVLQVGDGIARIHGLDEVMAG 27
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 75
Score = 25.0 bits (55), Expect = 2.3
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 141 TGNII-LQNGVARLSGLENALMG 162
G +I + +G+AR GL+N + G
Sbjct: 8 VGTVIQVGDGIARAHGLDNVMSG 30
>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1
{Cow (Bos taurus) [TaxId: 9913]}
Length = 71
Score = 24.3 bits (53), Expect = 3.7
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 141 TGNII-LQNGVARLSGLENALMG 162
TG ++ + +G+AR+ GL N
Sbjct: 5 TGRVLSIGDGIARVHGLRNVQAE 27
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 24.5 bits (53), Expect = 7.8
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 6/53 (11%)
Query: 90 YKSCWHNDWADKYGRRSDGLPL-----SQVQRLGRQILEALV-FLKERGFPPC 136
+ +DW P S + L ++L + P C
Sbjct: 74 IEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWSLLSAPSC 126
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 24.0 bits (52), Expect = 8.8
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 18 ERLLTLTPRS-IQCVINNDSETRKSIMDLFLALQHPYIYPVLDLEFVEDAARDRAYNILV 76
E L L P ++ V N SE + + Q P+ V D R +
Sbjct: 2 EYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFR--------VCDHKRTIRKGLTA 53
Query: 77 IPLSSKGSLKDLIYKSC 93
+ ++L+ K+
Sbjct: 54 ------ATRQELLAKAL 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.427
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,395
Number of extensions: 31324
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 16
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)