BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11412
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein
From Sulfolobus Tokodaii, St0059
Length = 462
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 24/149 (16%)
Query: 1 FYRQSDGTYKADKVIDIPAKQVQG-----YPGGDKVPAMVTDILISLDDRYLYTSNWMHG 55
FY DG + A+KVI+IPA+ ++G VP +VTDI ISLDD++LY S W G
Sbjct: 286 FYE--DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343
Query: 56 DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 115
++RQYDI + PVL G++ LGG D P G + TG+ QM
Sbjct: 344 EVRQYDISNPFKPVLTGKVKLGGIFHR------ADHP-----------AGHKLTGAPQML 386
Query: 116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVK 144
++S DG+R+YV++SL+S WD + YP+ +K
Sbjct: 387 EISRDGRRVYVTNSLYSTWDNQFYPEGLK 415
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 17/108 (15%)
Query: 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 240
+VTDI ISLDD++LY S W G++RQYDI + PVL G++ LGG D P
Sbjct: 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR------ADHP- 374
Query: 241 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD 288
G + TG+ QM ++S DG+R+YV++SL+S WD + YP+
Sbjct: 375 ----------AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE 412
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 99 DPVIIKGRRFTGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVK-----TDAAFGSD 152
+P+ KG TGS ++ + GK ++V S +PW+KE+ LVK D AF +
Sbjct: 43 EPLAYKGLE-TGSREVVSHVIKQGKIVFVLCSALNPWNKEMGDHLVKHGDGVKDIAFEVE 101
Query: 153 EIMEFIQRNEMRSMPL--------SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHG 202
+ +Q+ R + G K+ D +L ++ YT ++ G
Sbjct: 102 DCEHIVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLVEKINYTGRFLPG 159
>pdb|1VLR|A Chain A, Crystal Structure Of Mrna Decapping Enzyme (Dcps) From Mus
Musculus At 1.83 A Resolution
pdb|1VLR|B Chain B, Crystal Structure Of Mrna Decapping Enzyme (Dcps) From Mus
Musculus At 1.83 A Resolution
Length = 350
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 74 IFLGGKIQSDSGVTVIDDPE--LDKQPDPVIIKGRRFTGSSQM-FQLSLDGKRIYVSSSL 130
IFL GK+ DSG T +D L+K P V + TGS ++ Q S D IY + +L
Sbjct: 73 IFLHGKVNEDSGDTHGEDAVVILEKTPFQVEHVAQLLTGSPELKLQFSND---IYSTYNL 129
Query: 131 FSP 133
F P
Sbjct: 130 FPP 132
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 221 IFLGGKIQSDSGVTVIDDPE--LDKQPDPVIIKGRRFTGSSQM-FQLSLDGKRIYVSSSL 277
IFL GK+ DSG T +D L+K P V + TGS ++ Q S D IY + +L
Sbjct: 73 IFLHGKVNEDSGDTHGEDAVVILEKTPFQVEHVAQLLTGSPELKLQFSND---IYSTYNL 129
Query: 278 FSP 280
F P
Sbjct: 130 FPP 132
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 99 DPVIIKGRRFTGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVK-----TDAAFGSD 152
+P+ +G TGS ++ + GK ++V SS +PW+KE+ LVK D AF +
Sbjct: 36 EPLAYRGLE-TGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVE 94
Query: 153 EIMEFIQRNEMRSMPL--------SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHG 202
+ +Q+ R + G K+ D +L ++ Y ++ G
Sbjct: 95 DCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPG 152
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 246 DPVIIKGRRFTGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLV 290
+P+ +G TGS ++ + GK ++V SS +PW+KE+ LV
Sbjct: 36 EPLAYRGLE-TGSREVVSHVIKQGKIVFVLSSALNPWNKEMGDHLV 80
>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
(Abft-2) From Porphyromonas Gingivalis. Northeast
Structural Genomics Consortium Target Pgr26
Length = 439
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 98 PDPVI--IKGRRFTG-SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEI 154
PD V+ ++G + G ++MF DG + + + K ++P+ V T FGS E+
Sbjct: 221 PDAVLRALEGHKDLGIHTEMFT---DGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKEL 277
Query: 155 MEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIR-QYDIRDTA 213
+F+ N + YP + +I +DR + ++ + D+ Q
Sbjct: 278 YDFVNNNPVIEC---------YPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIG 328
Query: 214 HPVLV---GQI-FLGGKIQSDSGVTVIDDPELDKQ 244
+ GQ+ FL G +S G++++ P K+
Sbjct: 329 YEQFSGSGGQVDFLRGAKRSKGGISIMAFPSTAKK 363
>pdb|3FWL|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
Pbp1b From Escherichia Coli
Length = 751
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 102 IIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDK--EIYPDLVKTDAAFGSDEIMEFIQ 159
+ GR G+S + Q + K +++SS S W K E Y L+ DA + D I+E
Sbjct: 203 LTAGRTVQGASTLTQQLV--KNLFLSSER-SYWRKANEAYXALI-XDARYSKDRILELYX 258
Query: 160 R---------NEMRSMPLSSLGSWKYPARSMVTD 184
NE+R PL+SL + P + D
Sbjct: 259 NEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLD 292
>pdb|3VMA|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
Pbp1b From Escherichia Coli
Length = 768
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 102 IIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDK--EIYPDLVKTDAAFGSDEIMEFIQ 159
+ GR G+S + Q + K +++SS S W K E Y L+ DA + D I+E
Sbjct: 220 LTAGRTVQGASTLTQQLV--KNLFLSSER-SYWRKANEAYMALI-MDARYSKDRILELYM 275
Query: 160 R---------NEMRSMPLSSLGSWKYPARSMVTD 184
NE+R PL+SL + P + D
Sbjct: 276 NEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLD 309
>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
Length = 374
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 83 DSGVTVIDDPE-----LDKQPDPV-IIKGRRFTGSSQMFQLSLDGKRIYVSS-------S 129
D G + DP+ L DP+ ++ R GS+Q L++ G I VSS +
Sbjct: 203 DKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGV-IQVSSQTEGDLSA 261
Query: 130 LFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS 169
F+P + PD+ K D D + F+++ E P++
Sbjct: 262 EFTPLSVTVVPDVTKGDWQPLIDALPNFVEQAEQAPKPIT 301
>pdb|1ZUA|X Chain X, Crystal Structure Of Akr1b10 Complexed With Nadp+ And
Tolrestat
Length = 317
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 157 FIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD-------RYLYTSNWMHGDIRQYDI 209
F++ + MP+ LG+WK P + + +++D Y+Y + G+ Q I
Sbjct: 5 FVELSTKAKMPIVGLGTWKSPLGKVKEAVKVAIDAGYRHIDCAYVYQNEHEVGEAIQEKI 64
Query: 210 RDTA 213
++ A
Sbjct: 65 QEKA 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,473,774
Number of Sequences: 62578
Number of extensions: 403193
Number of successful extensions: 942
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 13
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)