Query psy11412
Match_columns 290
No_of_seqs 166 out of 1367
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 17:47:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ece_A 462AA long hypothetical 100.0 4E-31 1.4E-35 253.5 17.3 217 12-288 166-412 (462)
2 3scy_A Hypothetical bacterial 99.8 3.2E-19 1.1E-23 163.4 24.0 159 33-276 155-325 (361)
3 3hfq_A Uncharacterized protein 99.8 2.8E-19 9.7E-24 162.7 22.0 164 34-276 142-305 (347)
4 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-18 8.1E-23 159.2 21.0 174 32-276 144-329 (365)
5 1nir_A Nitrite reductase; hemo 99.8 6.1E-18 2.1E-22 166.2 19.9 184 11-282 160-352 (543)
6 3c75_H MADH, methylamine dehyd 99.8 1.4E-18 4.7E-23 166.6 10.9 96 10-136 99-204 (426)
7 3u4y_A Uncharacterized protein 99.7 7.3E-17 2.5E-21 145.0 19.2 173 11-276 63-240 (331)
8 2mad_H Methylamine dehydrogena 99.7 1.1E-16 3.7E-21 150.4 20.3 95 11-136 48-152 (373)
9 1mda_H Methylamine dehydrogena 99.7 5.2E-18 1.8E-22 159.7 11.1 89 11-130 47-144 (368)
10 3u4y_A Uncharacterized protein 99.7 7.4E-17 2.5E-21 145.0 17.6 180 11-276 109-292 (331)
11 2oiz_A Aromatic amine dehydrog 99.7 3E-17 1E-21 152.8 14.9 87 12-130 33-128 (361)
12 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-16 4.8E-21 157.7 18.8 177 11-276 178-361 (567)
13 1ri6_A Putative isomerase YBHE 99.7 4.2E-16 1.4E-20 139.5 19.7 166 32-276 128-296 (343)
14 3hfq_A Uncharacterized protein 99.7 6.8E-16 2.3E-20 140.2 21.3 174 32-276 85-259 (347)
15 1fwx_A Nitrous oxide reductase 99.7 5E-17 1.7E-21 160.5 14.1 213 11-280 176-411 (595)
16 2oiz_A Aromatic amine dehydrog 99.7 4.9E-17 1.7E-21 151.4 13.3 106 110-270 254-361 (361)
17 1fwx_A Nitrous oxide reductase 99.7 1.3E-16 4.4E-21 157.6 14.8 190 11-279 113-352 (595)
18 3vgz_A Uncharacterized protein 99.7 7.6E-16 2.6E-20 138.9 18.7 168 12-277 166-334 (353)
19 1nir_A Nitrite reductase; hemo 99.7 4.9E-16 1.7E-20 152.7 18.0 212 10-276 200-440 (543)
20 1ri6_A Putative isomerase YBHE 99.7 2.4E-15 8.3E-20 134.5 19.0 159 31-276 36-197 (343)
21 1jof_A Carboxy-CIS,CIS-muconat 99.7 6.4E-16 2.2E-20 142.7 14.9 169 34-276 41-212 (365)
22 1l0q_A Surface layer protein; 99.7 9.2E-15 3.1E-19 134.2 20.2 164 12-276 14-177 (391)
23 3sjl_D Methylamine dehydrogena 99.6 1.5E-15 5.1E-20 143.7 14.9 138 38-225 38-180 (386)
24 3scy_A Hypothetical bacterial 99.6 1.5E-14 5E-19 132.3 20.7 168 32-276 49-230 (361)
25 1l0q_A Surface layer protein; 99.6 1.6E-14 5.6E-19 132.5 20.5 165 11-276 97-263 (391)
26 1pby_B Quinohemoprotein amine 99.6 8.7E-15 3E-19 130.5 17.4 209 12-282 13-266 (337)
27 3vgz_A Uncharacterized protein 99.6 9.2E-15 3.1E-19 131.7 17.7 159 31-276 39-204 (353)
28 3sjl_D Methylamine dehydrogena 99.6 8.5E-16 2.9E-20 145.4 11.2 215 11-276 60-299 (386)
29 2mad_H Methylamine dehydrogena 99.6 1.3E-14 4.5E-19 136.1 18.4 137 38-225 26-168 (373)
30 3dsm_A Uncharacterized protein 99.6 8.4E-15 2.9E-19 134.1 16.3 174 11-281 65-249 (328)
31 2iwa_A Glutamine cyclotransfer 99.6 6.5E-15 2.2E-19 132.7 15.0 187 10-285 44-231 (266)
32 2ece_A 462AA long hypothetical 99.6 1.8E-15 6.2E-20 145.2 11.5 122 2-141 286-412 (462)
33 1qks_A Cytochrome CD1 nitrite 99.6 3.5E-14 1.2E-18 140.5 19.4 202 11-277 219-460 (567)
34 3c75_H MADH, methylamine dehyd 99.6 8.2E-15 2.8E-19 140.4 13.7 134 42-225 82-220 (426)
35 3bws_A Protein LP49; two-domai 99.6 1.8E-13 6.3E-18 127.2 20.5 164 12-276 236-420 (433)
36 1jmx_B Amine dehydrogenase; ox 99.6 1.4E-13 4.9E-18 123.4 17.5 150 12-211 23-175 (349)
37 3dsm_A Uncharacterized protein 99.5 4.2E-14 1.4E-18 129.4 13.5 171 12-275 107-285 (328)
38 1pby_B Quinohemoprotein amine 99.5 1.5E-13 5.1E-18 122.5 16.5 58 181-276 242-299 (337)
39 1mda_H Methylamine dehydrogena 99.5 5.7E-14 2E-18 132.1 11.2 181 11-225 97-357 (368)
40 3bws_A Protein LP49; two-domai 99.5 9.7E-13 3.3E-17 122.3 18.7 172 12-276 193-364 (433)
41 4h5i_A Guanine nucleotide-exch 99.5 5.7E-13 2E-17 123.4 14.0 180 12-282 159-340 (365)
42 3nol_A Glutamine cyclotransfer 99.4 2E-12 7E-17 115.9 15.4 185 11-285 66-250 (262)
43 3ow8_A WD repeat-containing pr 99.4 1.4E-11 4.7E-16 112.0 19.0 152 33-282 165-318 (321)
44 3mbr_X Glutamine cyclotransfer 99.4 6.4E-12 2.2E-16 111.6 15.9 186 11-285 44-229 (243)
45 1npe_A Nidogen, entactin; glyc 99.4 1.3E-11 4.5E-16 108.8 17.5 148 34-276 37-186 (267)
46 3nok_A Glutaminyl cyclase; bet 99.4 2.1E-12 7E-17 116.0 12.3 189 6-285 71-260 (268)
47 1jmx_B Amine dehydrogenase; ox 99.4 2.3E-12 8E-17 115.4 12.5 159 36-282 3-172 (349)
48 4h5i_A Guanine nucleotide-exch 99.4 1.7E-11 5.8E-16 113.4 17.4 159 33-283 134-298 (365)
49 4gqb_B Methylosome protein 50; 99.4 4.5E-11 1.5E-15 110.2 19.8 187 33-284 83-288 (344)
50 2iwa_A Glutamine cyclotransfer 99.4 3.2E-11 1.1E-15 108.6 17.8 146 34-276 22-169 (266)
51 3fm0_A Protein CIAO1; WDR39,SG 99.4 3.3E-11 1.1E-15 110.1 17.9 159 34-282 18-178 (345)
52 1nr0_A Actin interacting prote 99.3 1.7E-11 6E-16 120.8 16.1 160 33-285 449-611 (611)
53 1gxr_A ESG1, transducin-like e 99.3 1.3E-10 4.5E-15 103.0 19.4 162 12-276 165-326 (337)
54 3fm0_A Protein CIAO1; WDR39,SG 99.3 7.1E-11 2.4E-15 107.9 17.8 159 33-282 62-222 (345)
55 3ow8_A WD repeat-containing pr 99.3 1.1E-10 3.9E-15 105.9 18.9 152 34-283 82-235 (321)
56 2ynn_A Coatomer subunit beta'; 99.3 1E-10 3.6E-15 104.8 18.0 152 34-282 15-169 (304)
57 1npe_A Nidogen, entactin; glyc 99.3 1.9E-10 6.5E-15 101.3 18.9 119 33-210 79-197 (267)
58 1gxr_A ESG1, transducin-like e 99.3 6.6E-10 2.3E-14 98.4 22.4 148 32-276 97-244 (337)
59 2ymu_A WD-40 repeat protein; u 99.3 1E-10 3.4E-15 112.7 17.5 149 33-282 427-577 (577)
60 1got_B GT-beta; complex (GTP-b 99.3 1.9E-10 6.6E-15 104.6 18.5 148 33-276 185-332 (340)
61 1nr0_A Actin interacting prote 99.3 2.6E-10 8.8E-15 112.4 20.7 184 34-282 149-352 (611)
62 2vdu_B TRNA (guanine-N(7)-)-me 99.3 1.5E-10 5.2E-15 109.2 17.4 159 33-282 103-268 (450)
63 3ei3_B DNA damage-binding prot 99.3 6.5E-10 2.2E-14 101.7 21.1 184 33-282 164-379 (383)
64 2ojh_A Uncharacterized protein 99.3 1.9E-10 6.6E-15 99.5 16.5 171 10-276 22-192 (297)
65 3vl1_A 26S proteasome regulato 99.2 6.5E-10 2.2E-14 102.5 20.6 197 13-283 81-320 (420)
66 4ery_A WD repeat-containing pr 99.2 4.3E-10 1.5E-14 100.2 18.5 151 34-282 25-177 (312)
67 4g56_B MGC81050 protein; prote 99.2 3E-10 1E-14 104.5 17.9 183 33-282 140-340 (357)
68 3g4e_A Regucalcin; six bladed 99.2 2.6E-10 8.9E-15 102.2 16.9 112 110-276 149-261 (297)
69 2xzm_R RACK1; ribosome, transl 99.2 5.2E-10 1.8E-14 101.7 18.7 183 34-283 23-242 (343)
70 3dwl_C Actin-related protein 2 99.2 2.5E-10 8.4E-15 104.0 16.2 186 32-276 55-271 (377)
71 2aq5_A Coronin-1A; WD40 repeat 99.2 5E-11 1.7E-15 110.5 11.6 144 12-211 156-299 (402)
72 1k8k_C P40, ARP2/3 complex 41 99.2 9.5E-10 3.3E-14 99.2 19.8 159 34-282 10-170 (372)
73 1erj_A Transcriptional repress 99.2 5.9E-10 2E-14 103.6 18.7 157 34-282 125-284 (393)
74 3zwl_B Eukaryotic translation 99.2 1.8E-09 6.1E-14 96.7 21.3 187 13-282 57-246 (369)
75 3tc9_A Hypothetical hydrolase; 99.2 1.4E-10 4.7E-15 110.7 14.7 151 34-276 138-289 (430)
76 3frx_A Guanine nucleotide-bind 99.2 2.1E-09 7.1E-14 97.0 21.7 172 34-276 67-257 (319)
77 3lrv_A PRE-mRNA-splicing facto 99.2 5.8E-10 2E-14 101.3 17.5 116 33-211 126-244 (343)
78 2ynn_A Coatomer subunit beta'; 99.2 1.8E-09 6.2E-14 96.6 20.3 183 34-284 57-258 (304)
79 2j04_A TAU60, YPL007P, hypothe 99.2 8.2E-10 2.8E-14 109.0 19.3 179 32-276 85-287 (588)
80 3mmy_A MRNA export factor; mRN 99.2 7.8E-10 2.7E-14 99.0 17.5 117 32-211 39-160 (368)
81 1k8k_C P40, ARP2/3 complex 41 99.2 1E-09 3.5E-14 99.0 18.3 153 32-276 96-264 (372)
82 4g56_B MGC81050 protein; prote 99.2 3E-10 1E-14 104.6 15.0 160 33-282 43-210 (357)
83 1ijq_A LDL receptor, low-densi 99.2 1.4E-09 4.6E-14 99.2 19.2 170 13-276 13-183 (316)
84 1erj_A Transcriptional repress 99.2 7.1E-10 2.4E-14 103.0 17.3 167 34-282 66-235 (393)
85 4ery_A WD repeat-containing pr 99.2 2.5E-09 8.6E-14 95.2 20.3 146 34-276 67-212 (312)
86 3mmy_A MRNA export factor; mRN 99.2 1.5E-09 5.3E-14 97.1 18.9 62 32-129 86-149 (368)
87 4gqb_B Methylosome protein 50; 99.2 2.7E-10 9.1E-15 105.0 14.1 165 12-274 151-317 (344)
88 2ymu_A WD-40 repeat protein; u 99.2 7.4E-10 2.5E-14 106.6 17.7 150 33-283 386-537 (577)
89 1vyh_C Platelet-activating fac 99.2 9.4E-10 3.2E-14 103.0 17.9 151 34-282 110-262 (410)
90 2hqs_A Protein TOLB; TOLB, PAL 99.2 8.8E-10 3E-14 103.8 17.6 166 11-276 204-373 (415)
91 3zwl_B Eukaryotic translation 99.2 2.6E-09 9E-14 95.6 19.9 177 12-276 98-279 (369)
92 2xyi_A Probable histone-bindin 99.2 2.3E-10 7.9E-15 107.6 13.5 122 33-211 232-353 (430)
93 3fvz_A Peptidyl-glycine alpha- 99.2 1.5E-09 5E-14 98.7 18.2 72 180-276 143-215 (329)
94 1q7f_A NHL, brain tumor CG1071 99.2 1.3E-09 4.4E-14 96.0 17.2 148 33-276 121-269 (286)
95 3fvz_A Peptidyl-glycine alpha- 99.2 3.7E-10 1.3E-14 102.7 14.1 160 34-276 144-310 (329)
96 3frx_A Guanine nucleotide-bind 99.2 2.1E-09 7.3E-14 96.9 18.8 183 34-282 19-224 (319)
97 3iz6_a 40S ribosomal protein R 99.2 1.6E-09 5.4E-14 100.2 18.0 163 34-282 207-372 (380)
98 2ecf_A Dipeptidyl peptidase IV 99.1 6E-10 2.1E-14 111.1 16.1 138 32-211 36-181 (741)
99 2hes_X YDR267CP; beta-propelle 99.1 2.1E-09 7.3E-14 97.4 18.3 159 34-282 60-227 (330)
100 2xzm_R RACK1; ribosome, transl 99.1 2.4E-09 8.3E-14 97.3 18.7 176 34-282 78-282 (343)
101 2p4o_A Hypothetical protein; p 99.1 1.4E-09 4.9E-14 98.0 16.8 183 31-276 70-277 (306)
102 2pbi_B Guanine nucleotide-bind 99.1 2E-09 7E-14 98.7 18.0 147 34-276 198-346 (354)
103 2hqs_A Protein TOLB; TOLB, PAL 99.1 3.2E-09 1.1E-13 100.0 19.6 167 11-276 160-330 (415)
104 4e54_B DNA damage-binding prot 99.1 8.6E-10 2.9E-14 103.7 15.2 187 34-282 121-324 (435)
105 2aq5_A Coronin-1A; WD40 repeat 99.1 2.2E-09 7.5E-14 99.3 17.7 151 33-274 82-238 (402)
106 2ojh_A Uncharacterized protein 99.1 2.2E-09 7.4E-14 92.8 16.5 152 34-276 130-291 (297)
107 2hes_X YDR267CP; beta-propelle 99.1 4.3E-09 1.5E-13 95.4 19.1 159 34-282 16-181 (330)
108 3vl1_A 26S proteasome regulato 99.1 3.5E-09 1.2E-13 97.5 18.3 219 12-276 163-408 (420)
109 3dwl_C Actin-related protein 2 99.1 1.5E-10 5.3E-15 105.3 8.9 160 34-282 13-174 (377)
110 2qe8_A Uncharacterized protein 99.1 9.1E-10 3.1E-14 100.9 14.0 181 33-276 120-310 (343)
111 3tc9_A Hypothetical hydrolase; 99.1 4.2E-09 1.4E-13 100.4 19.1 138 10-210 159-300 (430)
112 1r5m_A SIR4-interacting protei 99.1 4.2E-09 1.4E-13 96.1 18.3 190 33-282 46-275 (425)
113 2vdu_B TRNA (guanine-N(7)-)-me 99.1 3.2E-09 1.1E-13 100.1 17.6 146 33-223 196-353 (450)
114 2oaj_A Protein SNI1; WD40 repe 99.1 3E-09 1E-13 110.3 18.9 176 33-283 18-240 (902)
115 4gq1_A NUP37; propeller, trans 99.1 4.9E-09 1.7E-13 97.5 18.5 90 181-276 256-379 (393)
116 4e54_B DNA damage-binding prot 99.1 2.1E-09 7.3E-14 101.0 16.0 138 13-211 190-327 (435)
117 1sq9_A Antiviral protein SKI8; 99.1 3.3E-09 1.1E-13 96.9 16.7 140 32-222 186-330 (397)
118 2pm7_B Protein transport prote 99.1 2.5E-08 8.6E-13 88.8 22.1 191 33-283 54-283 (297)
119 3iz6_a 40S ribosomal protein R 99.1 2.8E-09 9.5E-14 98.5 16.3 188 34-283 68-278 (380)
120 1r5m_A SIR4-interacting protei 99.1 4E-09 1.4E-13 96.2 17.2 132 13-211 230-361 (425)
121 2p4o_A Hypothetical protein; p 99.1 7.3E-09 2.5E-13 93.3 18.5 62 30-129 29-90 (306)
122 2pbi_B Guanine nucleotide-bind 99.1 3.6E-09 1.2E-13 97.0 16.7 153 34-282 156-312 (354)
123 3hrp_A Uncharacterized protein 99.1 2.5E-09 8.6E-14 101.1 16.0 142 12-210 154-297 (409)
124 3v65_B Low-density lipoprotein 99.1 4.3E-09 1.5E-13 98.7 17.3 150 32-276 115-265 (386)
125 3ei3_B DNA damage-binding prot 99.1 7.2E-09 2.5E-13 94.7 18.3 175 13-282 99-279 (383)
126 2pm9_A Protein WEB1, protein t 99.1 6.7E-10 2.3E-14 101.9 11.3 119 32-212 214-338 (416)
127 1vyh_C Platelet-activating fac 99.1 8.3E-09 2.8E-13 96.5 18.8 153 33-283 193-367 (410)
128 1rwi_B Serine/threonine-protei 99.1 2E-09 6.9E-14 93.5 13.5 145 33-276 108-252 (270)
129 1got_B GT-beta; complex (GTP-b 99.1 8E-09 2.7E-13 93.9 18.1 153 34-282 99-254 (340)
130 4aez_A CDC20, WD repeat-contai 99.1 9E-09 3.1E-13 95.4 18.5 158 32-282 217-377 (401)
131 2oaj_A Protein SNI1; WD40 repe 99.1 1.2E-09 4.2E-14 113.2 13.8 73 180-282 576-658 (902)
132 2pm9_A Protein WEB1, protein t 99.0 1.6E-08 5.3E-13 92.7 19.7 186 12-283 47-247 (416)
133 3f3f_A Nucleoporin SEH1; struc 99.0 1.3E-08 4.4E-13 89.6 18.4 122 33-212 12-144 (351)
134 3v64_C Agrin; beta propeller, 99.0 7.8E-09 2.7E-13 95.7 17.8 149 33-276 73-222 (349)
135 3g4e_A Regucalcin; six bladed 99.0 9.3E-09 3.2E-13 92.0 17.6 128 31-210 52-179 (297)
136 3mkq_A Coatomer beta'-subunit; 99.0 6.5E-09 2.2E-13 104.1 18.3 147 33-276 14-161 (814)
137 3i2n_A WD repeat-containing pr 99.0 1.5E-08 5E-13 90.6 18.7 119 34-212 166-292 (357)
138 2pm7_B Protein transport prote 99.0 1.7E-08 5.8E-13 89.9 18.8 118 34-211 11-132 (297)
139 3dw8_B Serine/threonine-protei 99.0 1.1E-07 3.8E-12 88.0 25.0 101 180-282 178-312 (447)
140 3jrp_A Fusion protein of prote 99.0 1.9E-08 6.6E-13 90.4 19.1 158 32-276 101-276 (379)
141 3jrp_A Fusion protein of prote 99.0 2.5E-08 8.6E-13 89.6 19.8 119 33-211 12-134 (379)
142 3gre_A Serine/threonine-protei 99.0 7.7E-09 2.6E-13 96.2 16.8 169 33-283 64-243 (437)
143 4aez_A CDC20, WD repeat-contai 99.0 2.3E-08 7.7E-13 92.7 19.8 191 13-275 116-322 (401)
144 1rwi_B Serine/threonine-protei 99.0 4.5E-09 1.5E-13 91.3 14.2 111 34-209 25-136 (270)
145 3dm0_A Maltose-binding peripla 99.0 1.5E-08 5.2E-13 100.9 19.3 154 34-282 432-589 (694)
146 4aow_A Guanine nucleotide-bind 99.0 6.7E-08 2.3E-12 85.8 21.4 184 34-282 40-243 (340)
147 3bg1_A Protein SEC13 homolog; 99.0 1.1E-08 3.9E-13 92.0 16.6 185 33-282 14-244 (316)
148 3k26_A Polycomb protein EED; W 99.0 2.3E-08 8E-13 89.4 18.5 118 33-211 70-192 (366)
149 3kya_A Putative phosphatase; s 99.0 2.6E-09 8.9E-14 103.9 13.0 130 34-210 140-277 (496)
150 3p5b_L Low density lipoprotein 99.0 2E-08 7E-13 94.7 18.9 154 32-276 111-265 (400)
151 3hrp_A Uncharacterized protein 99.0 1E-08 3.5E-13 96.9 16.4 153 34-276 132-286 (409)
152 1q7f_A NHL, brain tumor CG1071 99.0 1.4E-08 4.9E-13 89.2 16.3 147 33-275 77-224 (286)
153 3i2n_A WD repeat-containing pr 99.0 3.4E-08 1.2E-12 88.2 18.6 176 33-276 19-232 (357)
154 1ijq_A LDL receptor, low-densi 99.0 1.9E-08 6.7E-13 91.5 17.2 117 33-210 77-194 (316)
155 2dg1_A DRP35, lactonase; beta 99.0 4.7E-08 1.6E-12 87.6 19.5 118 110-276 182-299 (333)
156 4gga_A P55CDC, cell division c 99.0 9.5E-08 3.3E-12 89.1 21.8 209 34-282 149-392 (420)
157 3dr2_A Exported gluconolactona 99.0 1E-07 3.5E-12 85.4 21.2 190 32-276 85-296 (305)
158 3dw8_B Serine/threonine-protei 99.0 4.9E-08 1.7E-12 90.4 19.7 129 34-211 179-315 (447)
159 2z3z_A Dipeptidyl aminopeptida 99.0 4.1E-09 1.4E-13 104.6 13.1 61 183-277 313-376 (706)
160 1yfq_A Cell cycle arrest prote 99.0 2.6E-08 8.8E-13 88.8 17.0 180 33-276 12-214 (342)
161 3k26_A Polycomb protein EED; W 99.0 1.7E-08 6E-13 90.2 15.9 158 34-282 20-189 (366)
162 1pgu_A Actin interacting prote 99.0 2.6E-08 8.8E-13 95.9 18.1 160 33-282 64-235 (615)
163 2ecf_A Dipeptidyl peptidase IV 99.0 2E-09 6.9E-14 107.3 10.6 59 35-129 111-171 (741)
164 3f3f_A Nucleoporin SEH1; struc 99.0 3.2E-08 1.1E-12 87.0 17.3 65 33-129 58-132 (351)
165 4a0p_A LRP6, LRP-6, low-densit 98.9 4.1E-08 1.4E-12 98.1 19.6 165 13-276 18-185 (628)
166 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 2.3E-08 8E-13 88.5 15.6 62 180-276 226-287 (314)
167 2qe8_A Uncharacterized protein 98.9 1.1E-08 3.8E-13 93.6 13.9 31 180-210 120-153 (343)
168 2j04_A TAU60, YPL007P, hypothe 98.9 6.8E-09 2.3E-13 102.5 13.2 143 31-211 14-160 (588)
169 3sfz_A APAF-1, apoptotic pepti 98.9 2.2E-08 7.4E-13 105.5 17.9 152 33-282 616-771 (1249)
170 3m0c_C LDL receptor, low-densi 98.9 4.6E-08 1.6E-12 100.2 19.6 154 32-276 423-577 (791)
171 3e5z_A Putative gluconolactona 98.9 5E-08 1.7E-12 86.4 17.5 191 32-276 68-276 (296)
172 1sq9_A Antiviral protein SKI8; 98.9 2.9E-08 1E-12 90.5 16.0 180 33-282 122-319 (397)
173 3sov_A LRP-6, low-density lipo 98.9 4.7E-08 1.6E-12 89.5 17.2 149 34-276 36-185 (318)
174 2w18_A PALB2, fancn, partner a 98.9 2.7E-08 9.2E-13 92.7 15.6 58 190-282 294-354 (356)
175 1yfq_A Cell cycle arrest prote 98.9 5.3E-08 1.8E-12 86.7 17.1 157 30-276 148-312 (342)
176 1n7d_A LDL receptor, low-densi 98.9 1.6E-09 5.6E-14 109.5 7.6 170 13-276 389-559 (699)
177 3jro_A Fusion protein of prote 98.9 1.2E-07 4E-12 96.0 20.9 191 33-283 54-283 (753)
178 3sfz_A APAF-1, apoptotic pepti 98.9 1.7E-08 5.9E-13 106.2 15.3 131 13-211 1028-1158(1249)
179 3lrv_A PRE-mRNA-splicing facto 98.9 5.9E-08 2E-12 87.9 16.9 141 13-211 152-292 (343)
180 3dm0_A Maltose-binding peripla 98.9 1.3E-08 4.4E-13 101.4 13.5 154 33-282 473-629 (694)
181 4a11_B DNA excision repair pro 98.9 1.7E-07 5.8E-12 85.0 20.0 199 32-282 43-273 (408)
182 3v64_C Agrin; beta propeller, 98.9 5.2E-08 1.8E-12 90.1 16.6 117 34-210 117-233 (349)
183 2ghs_A AGR_C_1268P; regucalcin 98.9 7.8E-08 2.7E-12 87.4 17.3 112 110-276 179-291 (326)
184 1xfd_A DIP, dipeptidyl aminope 98.9 5.6E-09 1.9E-13 103.6 10.0 127 33-211 17-143 (723)
185 1pgu_A Actin interacting prote 98.9 5.5E-08 1.9E-12 93.5 16.7 119 32-208 18-148 (615)
186 3p5b_L Low density lipoprotein 98.9 9.6E-08 3.3E-12 90.1 17.9 117 33-210 159-276 (400)
187 4aow_A Guanine nucleotide-bind 98.9 7.9E-08 2.7E-12 85.4 16.2 140 13-211 198-337 (340)
188 4a11_B DNA excision repair pro 98.9 1.4E-07 4.8E-12 85.6 18.2 210 13-284 125-364 (408)
189 4hw6_A Hypothetical protein, I 98.9 3.4E-08 1.2E-12 94.3 14.6 150 34-276 140-292 (433)
190 3mkq_A Coatomer beta'-subunit; 98.8 9.2E-08 3.1E-12 95.7 17.9 166 13-276 38-206 (814)
191 2z3z_A Dipeptidyl aminopeptida 98.8 8.9E-08 3E-12 94.9 17.6 54 11-64 236-293 (706)
192 3s94_A LRP-6, low-density lipo 98.8 1.1E-07 3.9E-12 94.8 18.2 151 32-276 39-190 (619)
193 1xfd_A DIP, dipeptidyl aminope 98.8 5.5E-08 1.9E-12 96.4 15.5 54 11-64 229-289 (723)
194 3e5z_A Putative gluconolactona 98.8 1E-07 3.5E-12 84.4 15.7 36 181-223 219-254 (296)
195 3v65_B Low-density lipoprotein 98.8 4.7E-08 1.6E-12 91.6 14.2 117 34-210 160-276 (386)
196 2ism_A Putative oxidoreductase 98.8 6.5E-08 2.2E-12 89.6 14.5 63 34-129 32-97 (352)
197 3bg1_A Protein SEC13 homolog; 98.8 4.9E-08 1.7E-12 87.8 13.3 71 180-282 213-290 (316)
198 2xyi_A Probable histone-bindin 98.8 1.1E-07 3.8E-12 89.1 16.0 167 32-282 128-306 (430)
199 3pe7_A Oligogalacturonate lyas 98.8 9.9E-09 3.4E-13 93.6 8.5 50 11-63 169-224 (388)
200 2qc5_A Streptogramin B lactona 98.8 1.6E-07 5.6E-12 81.9 16.0 145 32-276 145-290 (300)
201 3m0c_C LDL receptor, low-densi 98.8 1.3E-07 4.4E-12 96.9 17.6 117 33-210 471-588 (791)
202 2oit_A Nucleoporin 214KDA; NH2 98.8 7.8E-08 2.7E-12 91.4 14.9 123 31-210 91-222 (434)
203 3azo_A Aminopeptidase; POP fam 98.8 6E-08 2E-12 95.4 14.5 66 181-276 189-261 (662)
204 2j04_B YDR362CP, TAU91; beta p 98.8 6.1E-08 2.1E-12 94.7 13.9 148 33-276 267-417 (524)
205 3sov_A LRP-6, low-density lipo 98.8 2.2E-07 7.6E-12 85.0 16.8 117 34-210 80-196 (318)
206 3qqz_A Putative uncharacterize 98.8 9.1E-07 3.1E-11 78.9 19.8 123 33-208 27-150 (255)
207 3gre_A Serine/threonine-protei 98.8 4.6E-08 1.6E-12 90.9 11.8 141 32-222 111-253 (437)
208 2dg1_A DRP35, lactonase; beta 98.8 5.9E-07 2E-11 80.4 18.7 30 34-64 46-75 (333)
209 3dr2_A Exported gluconolactona 98.7 4.7E-07 1.6E-11 81.0 17.6 59 34-129 46-104 (305)
210 3nol_A Glutamine cyclotransfer 98.7 1.1E-07 3.7E-12 85.1 13.1 120 34-224 44-165 (262)
211 2fp8_A Strictosidine synthase; 98.7 2E-07 6.7E-12 84.2 15.1 132 33-211 80-216 (322)
212 3vu4_A KMHSV2; beta-propeller 98.7 6.1E-07 2.1E-11 82.1 18.6 70 180-282 196-268 (355)
213 3jro_A Fusion protein of prote 98.7 1.7E-07 5.7E-12 94.9 16.0 119 33-211 10-132 (753)
214 1z68_A Fibroblast activation p 98.7 2.2E-08 7.6E-13 99.6 9.4 122 35-211 18-139 (719)
215 2qc5_A Streptogramin B lactona 98.7 2.6E-07 8.8E-12 80.7 15.1 112 33-209 104-216 (300)
216 2z2n_A Virginiamycin B lyase; 98.7 2.7E-07 9.1E-12 80.5 15.2 144 32-275 98-242 (299)
217 1k32_A Tricorn protease; prote 98.7 1E-07 3.5E-12 99.6 14.5 143 34-276 339-491 (1045)
218 3odt_A Protein DOA1; ubiquitin 98.7 1.1E-06 3.9E-11 76.7 18.9 111 34-208 20-130 (313)
219 4hw6_A Hypothetical protein, I 98.7 5.3E-07 1.8E-11 86.0 17.8 139 11-210 163-303 (433)
220 3sre_A PON1, serum paraoxonase 98.7 1.2E-06 4.2E-11 81.6 19.8 133 33-211 112-252 (355)
221 3o4h_A Acylamino-acid-releasin 98.7 5.3E-08 1.8E-12 94.7 10.9 113 35-210 112-226 (582)
222 3nok_A Glutaminyl cyclase; bet 98.7 9.7E-08 3.3E-12 85.6 11.6 120 34-225 56-175 (268)
223 3odt_A Protein DOA1; ubiquitin 98.7 6.1E-07 2.1E-11 78.4 16.6 149 33-282 143-293 (313)
224 3o4h_A Acylamino-acid-releasin 98.7 7.6E-08 2.6E-12 93.6 11.3 30 34-63 23-52 (582)
225 3a9g_A Putative uncharacterize 98.7 4.1E-07 1.4E-11 84.4 15.2 63 34-129 30-95 (354)
226 3kya_A Putative phosphatase; s 98.7 1.1E-06 3.8E-11 85.4 18.6 154 10-210 162-340 (496)
227 2oit_A Nucleoporin 214KDA; NH2 98.6 2.8E-07 9.6E-12 87.5 13.7 173 34-283 38-221 (434)
228 2z2n_A Virginiamycin B lyase; 98.6 1.3E-06 4.6E-11 76.0 17.1 113 32-209 140-253 (299)
229 1n7d_A LDL receptor, low-densi 98.6 4.2E-08 1.4E-12 99.2 7.9 117 34-210 454-570 (699)
230 4ggc_A P55CDC, cell division c 98.6 1E-06 3.5E-11 77.3 16.0 159 33-282 151-312 (318)
231 2g8s_A Glucose/sorbosone dehyd 98.6 4.6E-07 1.6E-11 83.9 14.3 66 34-129 19-88 (353)
232 3amr_A 3-phytase; beta-propell 98.6 1.1E-06 3.9E-11 81.6 16.4 172 33-270 128-311 (355)
233 4ggc_A P55CDC, cell division c 98.6 7.6E-06 2.6E-10 71.7 21.0 192 13-275 48-259 (318)
234 3vu4_A KMHSV2; beta-propeller 98.6 1.3E-06 4.3E-11 80.0 16.0 128 33-211 196-336 (355)
235 3pe7_A Oligogalacturonate lyas 98.6 5.9E-07 2E-11 81.7 13.4 54 6-64 57-111 (388)
236 3s94_A LRP-6, low-density lipo 98.6 1.3E-06 4.5E-11 87.0 16.9 117 33-210 84-201 (619)
237 3azo_A Aminopeptidase; POP fam 98.6 6.5E-07 2.2E-11 88.0 14.3 31 34-64 131-170 (662)
238 1z68_A Fibroblast activation p 98.6 4E-07 1.4E-11 90.5 12.8 50 10-64 90-139 (719)
239 3v7d_B Cell division control p 98.6 3.8E-06 1.3E-10 78.5 18.7 174 39-282 127-338 (464)
240 2j04_B YDR362CP, TAU91; beta p 98.6 1.4E-06 4.7E-11 85.1 16.2 126 33-211 208-342 (524)
241 4a0p_A LRP6, LRP-6, low-densit 98.6 2.2E-06 7.7E-11 85.5 18.0 115 34-210 81-196 (628)
242 3amr_A 3-phytase; beta-propell 98.5 1.7E-06 5.8E-11 80.5 15.3 185 12-284 52-262 (355)
243 1k32_A Tricorn protease; prote 98.5 4.4E-07 1.5E-11 94.8 12.5 143 34-276 297-440 (1045)
244 4a5s_A Dipeptidyl peptidase 4 98.5 4.3E-07 1.5E-11 91.4 11.9 123 35-211 19-141 (740)
245 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 1.1E-06 3.8E-11 77.5 13.2 123 33-211 172-299 (314)
246 3v7d_B Cell division control p 98.5 2.3E-06 7.7E-11 80.0 15.9 108 38-211 274-381 (464)
247 3mbr_X Glutamine cyclotransfer 98.5 1.5E-06 5E-11 77.0 13.5 122 33-225 21-144 (243)
248 4a5s_A Dipeptidyl peptidase 4 98.5 2E-06 6.9E-11 86.5 16.2 47 13-64 95-141 (740)
249 4gga_A P55CDC, cell division c 98.5 2.2E-06 7.4E-11 79.8 14.6 118 32-211 276-395 (420)
250 2xdw_A Prolyl endopeptidase; a 98.5 4.8E-06 1.6E-10 83.2 17.9 61 34-129 126-190 (710)
251 3c5m_A Oligogalacturonate lyas 98.5 1.3E-06 4.4E-11 79.3 12.3 50 11-63 169-224 (396)
252 2fp8_A Strictosidine synthase; 98.4 1.8E-06 6.3E-11 77.7 12.8 29 34-63 20-48 (322)
253 2ghs_A AGR_C_1268P; regucalcin 98.4 9.8E-06 3.4E-10 73.4 17.2 31 34-64 50-80 (326)
254 3sbq_A Nitrous-oxide reductase 98.4 9.8E-06 3.3E-10 79.3 17.5 207 13-280 220-458 (638)
255 2w18_A PALB2, fancn, partner a 98.4 7.2E-06 2.5E-10 76.3 15.6 126 34-275 113-245 (356)
256 3sre_A PON1, serum paraoxonase 98.4 4.1E-05 1.4E-09 71.3 20.4 19 258-276 222-240 (355)
257 4gq1_A NUP37; propeller, trans 98.4 3.4E-06 1.2E-10 78.2 12.7 116 37-211 94-218 (393)
258 3sbq_A Nitrous-oxide reductase 98.3 9.2E-06 3.1E-10 79.5 15.3 96 12-133 300-400 (638)
259 1cru_A Protein (soluble quinop 98.3 1.5E-05 5.2E-10 76.4 16.7 69 34-129 28-99 (454)
260 2gop_A Trilobed protease; beta 98.3 6.1E-06 2.1E-10 73.9 12.8 19 111-129 60-78 (347)
261 2gop_A Trilobed protease; beta 98.3 1.1E-05 3.7E-10 72.3 13.7 60 33-128 59-122 (347)
262 2ism_A Putative oxidoreductase 98.2 7.2E-06 2.5E-10 75.8 11.3 75 110-210 31-113 (352)
263 2ovr_B FBW7, F-BOX/WD repeat p 98.2 4.8E-05 1.7E-09 70.8 17.0 64 181-276 364-427 (445)
264 3c5m_A Oligogalacturonate lyas 98.2 1.9E-06 6.6E-11 78.1 6.3 48 13-64 63-111 (396)
265 3das_A Putative oxidoreductase 98.1 5.1E-05 1.8E-09 70.4 14.6 65 34-127 33-100 (347)
266 2g8s_A Glucose/sorbosone dehyd 98.0 2E-05 6.8E-10 72.8 9.6 79 110-210 18-106 (353)
267 3a9g_A Putative uncharacterize 98.0 0.00023 7.7E-09 65.8 16.6 30 180-210 259-295 (354)
268 1yr2_A Prolyl oligopeptidase; 98.0 0.00019 6.3E-09 72.2 16.4 31 181-211 269-303 (741)
269 3no2_A Uncharacterized protein 97.9 0.00032 1.1E-08 62.2 15.8 181 10-275 15-203 (276)
270 3qqz_A Putative uncharacterize 97.8 0.0002 6.7E-09 63.7 12.6 114 110-276 27-140 (255)
271 2bkl_A Prolyl endopeptidase; m 97.8 0.0003 1E-08 70.0 15.3 31 34-64 122-156 (695)
272 3iuj_A Prolyl endopeptidase; h 97.8 0.00081 2.8E-08 67.1 18.0 31 182-212 236-269 (693)
273 1p22_A F-BOX/WD-repeat protein 97.8 0.00085 2.9E-08 62.3 17.0 28 181-211 298-325 (435)
274 3q6k_A 43.2 kDa salivary prote 97.8 0.003 1E-07 59.2 20.3 178 34-277 153-344 (381)
275 1p22_A F-BOX/WD-repeat protein 97.8 0.0012 4E-08 61.3 17.5 164 39-277 138-315 (435)
276 2xdw_A Prolyl endopeptidase; a 97.7 0.00031 1.1E-08 70.1 13.8 54 7-64 148-217 (710)
277 3no2_A Uncharacterized protein 97.7 0.0018 6.2E-08 57.3 16.9 168 34-276 78-261 (276)
278 2ovr_B FBW7, F-BOX/WD repeat p 97.6 0.003 1E-07 58.5 18.1 93 181-283 241-346 (445)
279 2bkl_A Prolyl endopeptidase; m 97.6 0.00069 2.4E-08 67.4 13.9 29 183-211 171-211 (695)
280 2wg3_C Hedgehog-interacting pr 97.5 0.0013 4.6E-08 63.1 14.5 28 34-62 15-43 (463)
281 3das_A Putative oxidoreductase 97.5 0.00079 2.7E-08 62.4 12.0 31 180-210 80-115 (347)
282 2p9w_A MAL S 1 allergenic prot 97.5 0.0017 5.7E-08 59.8 13.7 30 181-211 186-215 (334)
283 2xe4_A Oligopeptidase B; hydro 97.4 0.0021 7.2E-08 65.0 14.9 30 182-211 273-304 (751)
284 1cru_A Protein (soluble quinop 97.4 0.00088 3E-08 64.1 10.9 31 180-210 77-122 (454)
285 2p9w_A MAL S 1 allergenic prot 97.3 0.0034 1.2E-07 57.7 13.0 30 34-63 14-43 (334)
286 2wg3_C Hedgehog-interacting pr 97.0 0.0053 1.8E-07 58.9 11.6 20 110-129 14-34 (463)
287 3iuj_A Prolyl endopeptidase; h 96.9 0.012 4E-07 58.7 14.1 53 7-64 152-217 (693)
288 1xip_A Nucleoporin NUP159; bet 96.9 0.016 5.5E-07 54.3 13.9 32 30-66 86-117 (388)
289 1xip_A Nucleoporin NUP159; bet 96.8 0.0041 1.4E-07 58.4 9.0 29 34-64 39-67 (388)
290 1yr2_A Prolyl oligopeptidase; 96.6 0.028 9.5E-07 56.2 14.4 31 34-64 269-303 (741)
291 1kb0_A Quinohemoprotein alcoho 96.5 0.018 6E-07 57.6 11.9 38 184-225 481-518 (677)
292 3s25_A Hypothetical 7-bladed b 96.4 0.015 5.1E-07 52.5 9.7 26 185-210 150-175 (302)
293 2ad6_A Methanol dehydrogenase 95.6 0.15 5.2E-06 49.7 13.7 35 187-225 471-505 (571)
294 3s25_A Hypothetical 7-bladed b 95.6 0.12 4.3E-06 46.3 12.0 25 186-210 229-254 (302)
295 1kb0_A Quinohemoprotein alcoho 95.2 0.23 8E-06 49.4 13.4 35 185-223 318-355 (677)
296 2xe4_A Oligopeptidase B; hydro 95.2 0.081 2.8E-06 53.3 10.1 16 260-275 274-289 (751)
297 4a9v_A PHOX; hydrolase, beta-p 94.5 0.083 2.8E-06 52.0 7.8 19 258-276 532-550 (592)
298 4a9v_A PHOX; hydrolase, beta-p 93.7 0.21 7.2E-06 49.1 8.7 21 109-129 530-550 (592)
299 1yiq_A Quinohemoprotein alcoho 92.5 1.8 6.1E-05 43.1 13.9 35 186-224 481-515 (689)
300 2ad6_A Methanol dehydrogenase 92.1 5.3 0.00018 38.7 16.4 17 260-276 389-405 (571)
301 3zwu_A Alkaline phosphatase PH 90.2 0.89 3E-05 44.8 8.7 19 109-127 530-548 (592)
302 3zwu_A Alkaline phosphatase PH 89.7 0.86 2.9E-05 44.9 8.1 19 258-276 532-550 (592)
303 1tl2_A L10, protein (tachylect 89.6 4.3 0.00015 35.2 11.5 25 34-61 42-66 (236)
304 1kv9_A Type II quinohemoprotei 88.8 2.2 7.7E-05 42.1 10.6 37 185-225 463-499 (668)
305 3pbp_A Nucleoporin NUP82; beta 86.7 22 0.00074 33.7 17.2 171 33-275 21-198 (452)
306 2hz6_A Endoplasmic reticulum t 86.1 0.27 9.2E-06 44.9 1.8 21 43-64 8-28 (369)
307 3hxj_A Pyrrolo-quinoline quino 86.1 5.1 0.00017 34.3 10.2 27 35-63 139-165 (330)
308 3q6k_A 43.2 kDa salivary prote 85.8 2.8 9.7E-05 38.9 8.7 77 180-275 152-242 (381)
309 1tl2_A L10, protein (tachylect 85.0 2.4 8.1E-05 36.8 7.1 18 259-276 137-154 (236)
310 1kv9_A Type II quinohemoprotei 82.8 24 0.0008 34.7 14.4 17 259-275 383-399 (668)
311 1flg_A Protein (quinoprotein e 82.5 18 0.0006 35.1 13.2 33 189-225 495-527 (582)
312 3q7m_A Lipoprotein YFGL, BAMB; 82.0 5.6 0.00019 35.2 8.8 29 191-223 318-346 (376)
313 1w6s_A Methanol dehydrogenase 79.9 47 0.0016 32.3 15.9 18 258-275 394-411 (599)
314 1w6s_A Methanol dehydrogenase 79.6 37 0.0013 33.1 14.4 34 187-224 480-513 (599)
315 1k3i_A Galactose oxidase precu 72.6 59 0.002 31.4 13.8 27 184-210 291-322 (656)
316 2xbg_A YCF48-like protein; pho 67.7 62 0.0021 28.2 13.5 18 111-128 164-181 (327)
317 3hxj_A Pyrrolo-quinoline quino 65.5 60 0.0021 27.2 12.2 21 184-208 181-201 (330)
318 1yiq_A Quinohemoprotein alcoho 47.1 33 0.0011 33.8 6.7 61 10-77 455-515 (689)
319 3q7m_A Lipoprotein YFGL, BAMB; 39.5 1.8E+02 0.0063 25.0 10.6 21 43-64 52-72 (376)
320 1k3i_A Galactose oxidase precu 39.0 1.8E+02 0.0062 27.9 10.5 30 181-210 244-273 (656)
321 2hz6_A Endoplasmic reticulum t 28.6 47 0.0016 29.5 4.1 21 190-211 8-28 (369)
322 3pbp_A Nucleoporin NUP82; beta 28.1 1.8E+02 0.0061 27.4 7.9 62 183-276 24-85 (452)
323 3al9_A Plexin-A2; beta-propell 22.5 3.3E+02 0.011 26.0 8.9 83 182-280 20-105 (539)
324 3tvt_B PINS, partner of inscut 21.6 24 0.00082 22.0 0.4 12 260-271 31-42 (50)
325 1flg_A Protein (quinoprotein e 20.7 1.1E+02 0.0037 29.4 5.2 31 43-77 496-526 (582)
No 1
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.97 E-value=4e-31 Score=253.53 Aligned_cols=217 Identities=29% Similarity=0.496 Sum_probs=159.1
Q ss_pred EEEEecCCCccCCCCCCCCCC----CceEEEEEcCCCCEEEEEeCC------------------CCeEEEEEcCCCCCce
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVP----AMVTDILISLDDRYLYTSNWM------------------HGDIRQYDIRDTAHPV 69 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~----~~p~~va~SpDGr~Lyva~~~------------------~g~V~v~dv~d~~~~~ 69 (290)
--++|..+.+++... +++ ..++.+-++||++++|+++++ +++|.+||+.. .+
T Consensus 166 v~vlD~~T~~v~~~~---~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k 239 (462)
T 2ece_A 166 ILMLDHYSFEPLGKW---EIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RK 239 (462)
T ss_dssp EEEECTTTCCEEEEC---CSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TE
T ss_pred EEEEECCCCeEEEEE---ccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---Cc
Confidence 456777777888776 443 245568889999999999864 79999999965 36
Q ss_pred eeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE--ccCCCEEEEEcC-----CCCCcceeecccc
Q psy11412 70 LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL--SLDGKRIYVSSS-----LFSPWDKEIYPDL 142 (290)
Q Consensus 70 ~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf--sPdG~~lYv~ne-----l~~~~d~~~~~~~ 142 (290)
+++++.+|. .|.+|+||.| ||+|+++||++| +.+++.++.+.
T Consensus 240 ~~~tI~vg~-----------------------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d-- 288 (462)
T 2ece_A 240 RIHSLTLGE-----------------------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE-- 288 (462)
T ss_dssp EEEEEESCT-----------------------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--
T ss_pred EeeEEecCC-----------------------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec--
Confidence 666666641 1368999988 999999999999 98888776663
Q ss_pred cCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE
Q psy11412 143 VKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI 221 (290)
Q Consensus 143 ~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i 221 (290)
++ .+...+++++........+|.... + .. .++.+++|++|||||+||+|||++|+|++|||++++++++++++
T Consensus 289 --~g-~~~~~~vIdi~~~~v~~~lp~~~~-~--f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I 362 (462)
T 2ece_A 289 --DG-KWNAEKVIEIPAEPLEGNLPEILK-P--FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV 362 (462)
T ss_dssp --TT-EEEEEEEEEECCEECCSSCCGGGG-G--GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred --CC-ceeEEEEEeCCCcccccccccccc-c--cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence 22 344444444322221111111000 0 00 02467899999999999999999999999999888889999999
Q ss_pred eeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCcccCCC
Q psy11412 222 FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD 288 (290)
Q Consensus 222 ~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~~~~ 288 (290)
++||.+.+ .+++ +|.++.++|++|+|||||++|||||++|++||+||||+
T Consensus 363 ~tGG~~~~--------------~~~~---~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~ 412 (462)
T 2ece_A 363 KLGGIFHR--------------ADHP---AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE 412 (462)
T ss_dssp ECBTTTTC--------------BCCT---TSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTT
T ss_pred EeCCeecc--------------cccc---ccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCC
Confidence 99984310 1111 44555568999999999999999999999999999997
No 2
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.2e-19 Score=163.44 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC------ceee---eEEeecccccCCCceEEecCCCCcCCCCccee
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH------PVLV---GQIFLGGKIQSDSGVTVIDDPELDKQPDPVII 103 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~------~~~~---~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (290)
.++++++|||||++||+++.+++.|.+|++..... .... .....
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------- 207 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--------------------------- 207 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---------------------------
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec---------------------------
Confidence 36789999999999999999999999999975331 2111 11111
Q ss_pred eccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCce
Q psy11412 104 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMV 182 (290)
Q Consensus 104 ~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~ 182 (290)
..+.+|++++|||||++||++++..+.+.++... .+ .+. .+..++. .+. ...+
T Consensus 208 ---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~----~g-~~~-----------~~~~~~~-------~~~~~~~~ 261 (361)
T 3scy_A 208 ---APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA----DG-MLD-----------EIQTVAA-------DTVNAQGS 261 (361)
T ss_dssp ---CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE----TT-EEE-----------EEEEEES-------CSSCCCCE
T ss_pred ---CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec----CC-ceE-----------EeEEEec-------CCCCCCCc
Confidence 1246899999999999999998744433222111 11 111 0111010 111 2357
Q ss_pred eEEEEccCCCEEEEEeCC-CCcEEEEEec-CCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412 183 TDILISLDDRYLYTSNWM-HGDIRQYDIR-DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 260 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~-~~~V~v~Dv~-d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~ 260 (290)
.+|+|||||++||+++++ +++|.+|++. ..+..+.+..++.|. .|+
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~--------------------------------~~~ 309 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGI--------------------------------HPR 309 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSS--------------------------------CCC
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCC--------------------------------CCc
Confidence 899999999999999998 8999999995 234455666666633 799
Q ss_pred eEEEccCCCEEEEEcC
Q psy11412 261 MFQLSLDGKRIYVSSS 276 (290)
Q Consensus 261 ~~a~sPDG~~L~Van~ 276 (290)
.++|||||++||++|+
T Consensus 310 ~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 310 NFIITPNGKYLLVACR 325 (361)
T ss_dssp EEEECTTSCEEEEEET
T ss_pred eEEECCCCCEEEEEEC
Confidence 9999999999999985
No 3
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2.8e-19 Score=162.68 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.++.++++|||+ ||+++.+++.|.+|++...+....+..+.. ..+.+|+
T Consensus 142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~------------------------------~~g~~p~ 190 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM------------------------------EAGFGPR 190 (347)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEEC------------------------------CTTCCEE
T ss_pred CceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc------------------------------CCCCCCc
Confidence 688999999999 999999899999999974333333322111 1236899
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+++|+|||++||++++..+.+.++.+.. ..+.+..+. .+...+. + ......+.+++|||||++
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~---~~g~~~~~~--------~~~~~~~----~--~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDT---QTGAFTQLG--------IVKTIPA----D--YTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEET---TTTEEEEEE--------EEESSCT----T--CCSCCEEEEEEECTTSCE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecC---CCCceEEee--------eeeecCC----C--CCCCCcceeEEECCCCCE
Confidence 9999999999999887544433322210 011111111 1111111 0 011246888999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
||++++.+++|.+||+...+..+.+..++.++. .|+.++|||||++||+
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-------------------------------~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-------------------------------FPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-------------------------------CCCEEEECTTSSEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-------------------------------CcCeEEECCCCCEEEE
Confidence 999998899999999964344566776666441 6999999999999999
Q ss_pred EcC
Q psy11412 274 SSS 276 (290)
Q Consensus 274 an~ 276 (290)
++.
T Consensus 303 ~~~ 305 (347)
T 3hfq_A 303 VNQ 305 (347)
T ss_dssp EET
T ss_pred EEc
Confidence 986
No 4
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=2.4e-18 Score=159.17 Aligned_cols=174 Identities=10% Similarity=0.106 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|++++|||||++||+++.++++|.+|++...+....+..+... ..+.+
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----------------------------~~g~~ 194 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-----------------------------DPGDH 194 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-----------------------------STTCC
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC-----------------------------CCCCC
Confidence 3579999999999999999988899999999622333333322110 01368
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcc--ccCCCCceeEEE-Ec
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSW--KYPARSMVTDIL-IS 188 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~--~~~~~~~~~~i~-~S 188 (290)
|++++|||||++||++++..+.+.++.+.. +.+ .+.. . .+.+..++.. ..+. .++....+.+++ ||
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~--~~g-~~~~-~------~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDP--ATH-MPVY-T------HHSFPLIPPG-IPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECT--TTC-CEEE-E------EEEEESSCTT-CCCBCTTTSSBSEEEEEEEEC
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeC--CCC-cEEE-c------cceEEcCCCC-cCCcccccccccccccEEEEC
Confidence 999999999999999998655544432211 112 1110 0 0011111111 0000 000001578899 99
Q ss_pred cCCCEEEEEeCCCC-----cEEEEEecCCCCceEee-EEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412 189 LDDRYLYTSNWMHG-----DIRQYDIRDTAHPVLVG-QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 262 (290)
Q Consensus 189 pDGr~Lyvs~r~~~-----~V~v~Dv~d~~~~~~v~-~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 262 (290)
|||++||+++++++ +|.+|++...+....+. .++..+ ..|+.+
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------------------------------~~~~~~ 312 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------------------------------SGGHSN 312 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------------------------------CCTTCC
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------------------------------CCcccc
Confidence 99999999998776 89999996333333222 132212 268899
Q ss_pred EEcc---CCCEEEEEcC
Q psy11412 263 QLSL---DGKRIYVSSS 276 (290)
Q Consensus 263 a~sP---DG~~L~Van~ 276 (290)
+||| ||++||++|+
T Consensus 313 a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDD 329 (365)
T ss_dssp CEEECTTCTTEEEEECS
T ss_pred eecCCCcCCCEEEEEEc
Confidence 9999 8999999986
No 5
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.78 E-value=6.1e-18 Score=166.23 Aligned_cols=184 Identities=13% Similarity=0.053 Sum_probs=125.9
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
.-.++|....++...+ +++..++.++|||||++||+++.+ ++|.+||+.. ...+.+.++..|
T Consensus 160 ~V~v~D~~t~~~~~~i---~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~-~t~~~~~~i~~g------------- 221 (543)
T 1nir_A 160 QIALVDGDSKKIVKVI---DTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWA-KEPTKVAEIKIG------------- 221 (543)
T ss_dssp EEEEEETTTCCEEEEE---ECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTS-SSCEEEEEEECC-------------
T ss_pred eEEEEECCCceEEEEE---ecCcccceEEECCCCCEEEEECCC-CeEEEEECcC-CCCcEEEEEecC-------------
Confidence 3567888888777655 555568999999999999999985 9999999931 235555555433
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEcc----CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSL----DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM 166 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsP----dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 166 (290)
.+|++++||| ||++||++|+..+++.+ +|..+ .+.+..+
T Consensus 222 -------------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v---------------~D~~t---~~~~~~i 264 (543)
T 1nir_A 222 -------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAI---------------MDGET---LEPKQIV 264 (543)
T ss_dssp -------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEE---------------EETTT---CCEEEEE
T ss_pred -------------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEE---------------Eeccc---cccceee
Confidence 6899999999 99999999974443322 22211 1111111
Q ss_pred CccccCcc--ccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCC
Q psy11412 167 PLSSLGSW--KYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ 244 (290)
Q Consensus 167 p~~~~~~~--~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~ 244 (290)
+....... .....+.+.+|++||||+++|+++.++++|.+||+.+.... .+.+++.+.
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-~~~~i~~~~------------------- 324 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-TVTSIGAAP------------------- 324 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-EEEEEECCS-------------------
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-eeEEeccCc-------------------
Confidence 11000000 00011357889999999999999999999999999754322 234454433
Q ss_pred CCcceeecccccCCcceEEEccCCCEEEEEcC---CCCCCC
Q psy11412 245 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS---LFSPWD 282 (290)
Q Consensus 245 ~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~---~~~~~~ 282 (290)
.|++++|+|||++|||+|+ ....||
T Consensus 325 -------------~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 325 -------------FLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp -------------SCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred -------------CccCceECCCCCEEEEEecCCCeEEEEE
Confidence 7999999999999999975 445555
No 6
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.76 E-value=1.4e-18 Score=166.60 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=74.3
Q ss_pred eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeecccc
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKI 80 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~ 80 (290)
..--|||..+.++...+ +++..| ++++||||++|||+|. .++.|.+||..+ .+++..+.+++..
T Consensus 99 ~~VsVID~~t~~vv~~I---~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t---~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMT---DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT---FLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEE---ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC---CcEEEEEECCCcc
Confidence 67789999999999877 888899 9999999999999985 367899998754 5667777664210
Q ss_pred cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC-CCCcce
Q psy11412 81 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL-FSPWDK 136 (290)
Q Consensus 81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel-~~~~d~ 136 (290)
....+..|++++|||||++|||+|+. .+.+.+
T Consensus 172 ------------------------r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsV 204 (426)
T 3c75_H 172 ------------------------RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGV 204 (426)
T ss_dssp ------------------------CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEE
T ss_pred ------------------------ccccCCCcceEEEcCCCCEEEEEecCCCCeEEE
Confidence 00013579999999999999999974 444444
No 7
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.75 E-value=7.3e-17 Score=145.01 Aligned_cols=173 Identities=11% Similarity=0.121 Sum_probs=113.8
Q ss_pred EEEEEecCCCcc-CCCCCCCCCCCceEE-EEEcCCCCEEEEEeCCCC--eEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412 11 ADKVIDIPAKQV-QGYPGGDKVPAMVTD-ILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 86 (290)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~v~~~p~~-va~SpDGr~Lyva~~~~g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~ 86 (290)
.-.++|+...++ .... .....|.+ ++++|||++||+++..++ .|.+||+.. .+.+..+..
T Consensus 63 ~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~~---------- 126 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAI---QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIPI---------- 126 (331)
T ss_dssp EEEEEECSSSSCEEEEE---EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEEC----------
T ss_pred eEEEEECCCCceeEEec---ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEEC----------
Confidence 345677776665 3332 34567888 999999999995544334 999999864 333433322
Q ss_pred EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCC-cceeecccccCCCceeecceeeeeeecccccc
Q psy11412 87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP-WDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS 165 (290)
Q Consensus 87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~-~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 165 (290)
+..|++++|+|||++||+++..... +.++.... ++ .+ .+.. ..
T Consensus 127 ----------------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~---~g-~~-----~~~~----~~- 170 (331)
T 3u4y_A 127 ----------------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA---DG-VL-----FDTG----QE- 170 (331)
T ss_dssp ----------------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT---TC-CE-----EEEE----EE-
T ss_pred ----------------------CCCccceEECCCCCEEEEEecCCCceEEEEEECC---CC-cE-----eecC----Cc-
Confidence 2578999999999999998763222 22211110 11 11 1100 00
Q ss_pred cCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCC
Q psy11412 166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP 245 (290)
Q Consensus 166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~ 245 (290)
.++.+..+.+++|||||++||+++..++.|.+||+.+......+..++.+.
T Consensus 171 ---------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-------------------- 221 (331)
T 3u4y_A 171 ---------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN-------------------- 221 (331)
T ss_dssp ---------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS--------------------
T ss_pred ---------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC--------------------
Confidence 011234578899999999999999889999999986422222255555443
Q ss_pred CcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 246 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 246 ~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.|..++|+|||++||+++.
T Consensus 222 ------------~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 222 ------------LPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp ------------CCCCEEECTTSSEEEEECS
T ss_pred ------------CCceEEECCCCCEEEEEEc
Confidence 6899999999999999976
No 8
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.74 E-value=1.1e-16 Score=150.42 Aligned_cols=95 Identities=8% Similarity=-0.074 Sum_probs=68.9
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQ 81 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~ 81 (290)
.--|||..+.++...+ +++..| ++++||||++||++|. .++.|.+||... .+.++.+.+++..
T Consensus 48 ~v~v~D~~t~~~~~~i---~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---~~~~~~i~~~~~~- 119 (373)
T 2mad_H 48 QQWVLDAGSGSILGHV---NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELPDAP- 119 (373)
T ss_pred EEEEEECCCCeEEEEe---cCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC---CcEEEEEECCCcc-
Confidence 4478888888887655 677778 9999999999999984 367899999753 5566666554100
Q ss_pred CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC-CCCcce
Q psy11412 82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL-FSPWDK 136 (290)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel-~~~~d~ 136 (290)
....+..|++++||||||+||++|+. .+.+.+
T Consensus 120 -----------------------~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~v 152 (373)
T 2mad_H 120 -----------------------RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL 152 (373)
T ss_pred -----------------------ccccCCCccceEECCCCCEEEEEecCCCCeEEE
Confidence 00013579999999999999999864 343433
No 9
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.74 E-value=5.2e-18 Score=159.70 Aligned_cols=89 Identities=6% Similarity=-0.138 Sum_probs=70.7
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQ 81 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~ 81 (290)
.--|||..+.++...+ +++..| ++++||||++|||+|. .+++|.+||... .+++.++.+++..
T Consensus 47 ~vsvID~~t~~v~~~i---~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T---~~vv~~I~v~~~~- 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHS---LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADIELPDAP- 118 (368)
T ss_dssp EEEEEETTTTEEEEEE---EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEEEETTSC-
T ss_pred eEEEEECCCCeEEEEE---eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CCEEEEEECCCcc-
Confidence 5569999999999887 888899 9999999999999984 368999999754 5667777665210
Q ss_pred CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC
Q psy11412 82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 130 (290)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel 130 (290)
....+..|++++||||||+|||+|+.
T Consensus 119 -----------------------~~~~g~~P~~ia~SpDGk~lyVan~~ 144 (368)
T 1mda_H 119 -----------------------RFSVGPRVHIIGNCASSACLLFFLFG 144 (368)
T ss_dssp -----------------------SCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred -----------------------ccccCCCcceEEEcCCCCEEEEEccC
Confidence 00013579999999999999999975
No 10
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=7.4e-17 Score=145.01 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=118.4
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe-EEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 89 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~-V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~ 89 (290)
.-.++|+...++.... +....|++++++|||++||+++..++. |.+|++...+..........
T Consensus 109 ~i~v~d~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~------------- 172 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTI---PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI------------- 172 (331)
T ss_dssp EEEEEETTTTEEEEEE---ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-------------
T ss_pred cEEEEECCCCCeEEEE---ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-------------
Confidence 5667888877766554 567789999999999999999887788 99999975332211110000
Q ss_pred cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc---cccc
Q psy11412 90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE---MRSM 166 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~---i~~~ 166 (290)
..+.+|++++|+|||++||+++...+ .+.+++..+ .+. +..
T Consensus 173 -----------------~~~~~~~~~~~spdg~~l~v~~~~~~---------------~v~v~d~~~---~~~~~~~~~- 216 (331)
T 3u4y_A 173 -----------------SGGTRPFNITFTPDGNFAFVANLIGN---------------SIGILETQN---PENITLLNA- 216 (331)
T ss_dssp -----------------CSSSSEEEEEECTTSSEEEEEETTTT---------------EEEEEECSS---TTSCEEEEE-
T ss_pred -----------------cCCCCccceEECCCCCEEEEEeCCCC---------------eEEEEECCC---Ccccceeee-
Confidence 12367999999999999999886322 233333221 111 111
Q ss_pred CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412 167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD 246 (290)
Q Consensus 167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~ 246 (290)
++.+..+.+++|||||++||+++++++.|.+||+.+ +..+.+..+..+-.+ .+.
T Consensus 217 ---------~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~----------------~~~ 270 (331)
T 3u4y_A 217 ---------VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLI----------------DPR 270 (331)
T ss_dssp ---------EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCC----------------CCG
T ss_pred ---------ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC-Cceeeeccccccccc----------------CCC
Confidence 112345678999999999999998889999999853 233335544433100 000
Q ss_pred cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
. ......++|+|||++||+++.
T Consensus 271 ------~--~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 271 ------P--LFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp ------G--GTTCCCEEECTTSSEEEEEET
T ss_pred ------C--cccccceEECCCCCEEEEecC
Confidence 0 012355899999999999976
No 11
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=3e-17 Score=152.77 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=64.5
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQS 82 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~ 82 (290)
-.++|..+.++...+ +++..| +++|||||++||+++. .+++|.+||... .+.++++.++..
T Consensus 33 v~v~D~~t~~~~~~i---~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t---~~~~~~i~~~~~--- 102 (361)
T 2oiz_A 33 VHVYDYTNGKFLGMV---PTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK---LTFEKEISLPPK--- 102 (361)
T ss_dssp EEEEETTTCCEEEEE---ECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT---CCEEEEEEECTT---
T ss_pred EEEEECCCCeEEEEe---cCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC---CcEEEEEEcCcc---
Confidence 457787777776654 667788 9999999999999984 256799999753 556666655310
Q ss_pred CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCC
Q psy11412 83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 130 (290)
Q Consensus 83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel 130 (290)
....|..|++++|||||++||++|+.
T Consensus 103 ----------------------~~~~g~~p~~i~~spdg~~l~v~n~~ 128 (361)
T 2oiz_A 103 ----------------------RVQGLNYDGLFRQTTDGKFIVLQNAS 128 (361)
T ss_dssp ----------------------BCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred ----------------------ccccCCCcceEEECCCCCEEEEECCC
Confidence 00113679999999999999999864
No 12
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.4e-16 Score=157.74 Aligned_cols=177 Identities=15% Similarity=0.093 Sum_probs=126.2
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
.-.|||..+.++...+ +++..|++++|||||++||+++. +|.|.+||+.. ...+.+.++.+|
T Consensus 178 ~V~viD~~t~~v~~~i---~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~-~t~~~v~~i~~G------------- 239 (567)
T 1qks_A 178 QIALIDGSTYEIKTVL---DTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWM-KEPTTVAEIKIG------------- 239 (567)
T ss_dssp EEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTS-SSCCEEEEEECC-------------
T ss_pred eEEEEECCCCeEEEEE---eCCCCccceEECCCCCEEEEEcC-CCeEEEEECCC-CCCcEeEEEecC-------------
Confidence 4578999988888776 67888999999999999999985 78999999852 234556655554
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEc----cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLS----LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM 166 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafs----PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 166 (290)
.+|++++|| |||++|||+|++.+.+.++ |..+ .+.+..+
T Consensus 240 -------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi---------------D~~t---~~~~~~i 282 (567)
T 1qks_A 240 -------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM---------------DGET---LEPKKIQ 282 (567)
T ss_dssp -------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE---------------ETTT---CCEEEEE
T ss_pred -------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEE---------------ECCC---CcEEEEE
Confidence 689999999 7999999999865544332 2111 1122222
Q ss_pred Cccc--cCccc-cCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCC
Q psy11412 167 PLSS--LGSWK-YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDK 243 (290)
Q Consensus 167 p~~~--~~~~~-~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~ 243 (290)
+... +.+.. .+ ...+++|.+|+++..++++....+.|.++|..+... ..+..+..+.
T Consensus 283 ~~~~~~~~~~~~~p-~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-~~v~~i~~~~------------------ 342 (567)
T 1qks_A 283 STRGMTYDEQEYHP-EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEISAER------------------ 342 (567)
T ss_dssp ECCEECTTTCCEES-CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEEEECCS------------------
T ss_pred eccccccccccccC-CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-ceeeeeeccc------------------
Confidence 2110 00000 01 125678999999999999998899999999876432 2344454433
Q ss_pred CCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 244 QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 244 ~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.|+++.|+|||++|||||.
T Consensus 343 --------------~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 343 --------------FLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp --------------SEEEEEECTTSCEEEEEEG
T ss_pred --------------cccCceECCCCCEEEEEeC
Confidence 7899999999999999985
No 13
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.72 E-value=4.2e-16 Score=139.49 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeee--EEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~--~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
...+..++++|||++||+++..++.|.+||+...+...... .... ..+
T Consensus 128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------------------~~~ 177 (343)
T 1ri6_A 128 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------------------------VEG 177 (343)
T ss_dssp CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------------------------STT
T ss_pred CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc------------------------------CCC
Confidence 34688899999999999999778999999997533333222 1111 123
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|++++|+|||++||+++...+.+.++.... ..+.+.... .+..++.. ......+.+++|||
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~---~~g~~~~~~--------~~~~~~~~------~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKD---PHGNIECVQ--------TLDMMPEN------FSDTRWAADIHITP 240 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEESSC---TTSCCEEEE--------EEECSCTT------CCSCCCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEEecC---CCCcEEEEe--------eccccCcc------ccccCCccceEECC
Confidence 68999999999999999876433332221110 011111000 11111110 01123577899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG 268 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG 268 (290)
||++||++++.++.|.+||+.. .+..+.+..++.++ .|..++|+|||
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~s~dg 288 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--------------------------------QPRGFNVDHSG 288 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--------------------------------SCCCEEECTTS
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--------------------------------ccceEEECCCC
Confidence 9999999998899999999963 23345566665544 58899999999
Q ss_pred CEEEEEcC
Q psy11412 269 KRIYVSSS 276 (290)
Q Consensus 269 ~~L~Van~ 276 (290)
++||+++.
T Consensus 289 ~~l~~~~~ 296 (343)
T 1ri6_A 289 KYLIAAGQ 296 (343)
T ss_dssp SEEEEECT
T ss_pred CEEEEecC
Confidence 99999985
No 14
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.72 E-value=6.8e-16 Score=140.24 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|++++|||||++||++++.+++|.+|++...+....+..+...+. . +. ....+..
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~----------------p~-----~~~~~~~ 142 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH-G----------------PR-----PEQDGSH 142 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC-C----------------SS-----TTCSSCC
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC-C----------------CC-----ccccCCC
Confidence 457899999999999999998889999999965455555544332210 0 00 0001246
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
++.++|+|||+ +|+++...+ .+.++++.. ...+..... . ..+.+..+.+++|||||
T Consensus 143 ~~~~~~spdg~-l~v~~~~~~---------------~v~~~~~~~---~g~~~~~~~--~---~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDLGSD---------------KVYVYNVSD---AGQLSEQSV--L---TMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTT---------------EEEEEEECT---TSCEEEEEE--E---ECCTTCCEEEEEECTTS
T ss_pred ceEEEECCCCc-EEEEeCCCC---------------EEEEEEECC---CCcEEEeee--E---EcCCCCCCceEEECCCC
Confidence 88899999999 888875322 222222210 000000000 0 11123467889999999
Q ss_pred CEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
++||+++..++.|.+|++.. .+....+..+..... +......|+.++|||||++
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-------------------------~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-------------------------DYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-------------------------TCCSCCEEEEEEECTTSCE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-------------------------CCCCCCcceeEEECCCCCE
Confidence 99999998899999999963 222223333322110 0000125899999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
|||++.
T Consensus 254 l~v~~~ 259 (347)
T 3hfq_A 254 LYVSNR 259 (347)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999875
No 15
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.71 E-value=5e-17 Score=160.46 Aligned_cols=213 Identities=11% Similarity=0.077 Sum_probs=136.2
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC--------------CeEEEEEcCCCCCceeeeEEee
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH--------------GDIRQYDIRDTAHPVLVGQIFL 76 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~--------------g~V~v~dv~d~~~~~~~~~i~~ 76 (290)
.--+||..+.+|...+ +|++.|.++++||||+++|++++.+ +.|.++|+.... + .+..
T Consensus 176 ~vtvID~~t~~v~~qI---~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--~---~v~~ 247 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQV---LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--K---AIAA 247 (595)
T ss_dssp EEEEEETTTTEEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH--H---HHHH
T ss_pred eEEEEECCCCeEEEEE---EeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee--E---eccC
Confidence 4568899999988877 8888999999999999999999987 457777753210 0 0111
Q ss_pred cccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeeccccc--CCCceeeccee
Q psy11412 77 GGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV--KTDAAFGSDEI 154 (290)
Q Consensus 77 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~--~~g~~~~~~~~ 154 (290)
|. ....+.+.|++-.+..... .....+.+..|+++.||||||++||++++.+.+.++.+.... -++ .+ +.
T Consensus 248 Gk-~~~i~~V~VID~~~~~~~~---~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l---~~ 319 (595)
T 1fwx_A 248 GD-YQELNGVKVVDGRKEASSL---FTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA---DP 319 (595)
T ss_dssp TC-SEEETTEEEEECSGGGCCS---SEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC---CG
T ss_pred CC-eeEECcEEEEeCcccCCce---eEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc---Cc
Confidence 10 0001347777755421111 012234457899999999999999999977666554332100 000 00 00
Q ss_pred eeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC-------CCceEeeEEeeCcee
Q psy11412 155 MEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT-------AHPVLVGQIFLGGKI 227 (290)
Q Consensus 155 ~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~-------~~~~~v~~i~~Gg~~ 227 (290)
. ...+. ..+.+..|.+++|+||| ++|++++.+++|.+||+... .....+.+++++-+.
T Consensus 320 ~----~~v~~----------~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 320 R----SAVVA----------EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp G----GGEEE----------CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred c----cceEE----------EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 0 00011 12234679999999999 99999999999999999541 113567888776410
Q ss_pred cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCC
Q psy11412 228 QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP 280 (290)
Q Consensus 228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~ 280 (290)
|.. ....+++++||||+||++|.+.+.
T Consensus 385 ------------------------Gh~--~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 385 ------------------------GHL--KTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp ------------------------EEE--EETTTTSTTCCSSEEEEEESCCTT
T ss_pred ------------------------ccc--eeccceEeCCCCCEEEEcCCCCcc
Confidence 000 013456789999999999996543
No 16
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=4.9e-17 Score=151.35 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCceEEEEccCCCEEEEEcCCCCC-cceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSP-WDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS 188 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~-~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S 188 (290)
.++++++|+|||+++||++++.+. .+. . .....+.++|. ...+.+.+++ .+. +.+|+||
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~---~---~~~~~v~viD~---~t~~~v~~i~----------~~~-p~~ia~s 313 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTH---K---FPAAEIWVMDT---KTKQRVARIP----------GRD-ALSMTID 313 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCT---T---CCCSEEEEEET---TTTEEEEEEE----------CTT-CCEEEEE
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccc---c---CCCceEEEEEC---CCCcEEEEEe----------cCC-eeEEEEC
Confidence 456779999999999998762211 000 0 01123333333 2334444322 234 7899999
Q ss_pred cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE-eeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412 189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI-FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 267 (290)
Q Consensus 189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i-~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD 267 (290)
|||++||++|+ ++|++||... ..++.++++ .+|. +|+.|+|+||
T Consensus 314 pdg~~l~v~n~--~~v~v~D~~t-~~l~~~~~i~~~G~--------------------------------~P~~~~~~p~ 358 (361)
T 2oiz_A 314 QQRNLMLTLDG--GNVNVYDISQ-PEPKLLRTIEGAAE--------------------------------ASLQVQFHPV 358 (361)
T ss_dssp TTTTEEEEECS--SCEEEEECSS-SSCEEEEEETTSCS--------------------------------SEEEEEECCC
T ss_pred CCCCEEEEeCC--CeEEEEECCC-CcceeeEEeccCCC--------------------------------CcEEEEecCC
Confidence 99999999995 8999999853 223788886 4444 8999999999
Q ss_pred CCE
Q psy11412 268 GKR 270 (290)
Q Consensus 268 G~~ 270 (290)
|++
T Consensus 359 G~~ 361 (361)
T 2oiz_A 359 GGT 361 (361)
T ss_dssp SCC
T ss_pred CCC
Confidence 974
No 17
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.70 E-value=1.3e-16 Score=157.55 Aligned_cols=190 Identities=11% Similarity=0.045 Sum_probs=127.8
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEE-c-CCCCEEEEEe-----------------CCCCeEEEEEcCCCCCceee
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILI-S-LDDRYLYTSN-----------------WMHGDIRQYDIRDTAHPVLV 71 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~-S-pDGr~Lyva~-----------------~~~g~V~v~dv~d~~~~~~~ 71 (290)
+-.+||+...++...+ .++....|+++++ + ||+++||+++ ...+.|.++|.+ ..+++
T Consensus 113 rVavIdl~t~~~~~ii-~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~---t~~v~ 188 (595)
T 1fwx_A 113 RVARVRCDVMKCDAIL-EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD---KWEVA 188 (595)
T ss_dssp EEEEEETTTTEEEEEE-ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT---TTEEE
T ss_pred EEEEEECCCceEeeEE-eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC---CCeEE
Confidence 4578888888876644 3366778999998 6 9999999995 445689999875 46777
Q ss_pred eEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCc--------------cee
Q psy11412 72 GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPW--------------DKE 137 (290)
Q Consensus 72 ~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~--------------d~~ 137 (290)
.++.++ ..|+++++||||+++|++++..+.. .++
T Consensus 189 ~qI~Vg--------------------------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~ 236 (595)
T 1fwx_A 189 WQVLVS--------------------------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF 236 (595)
T ss_dssp EEEEES--------------------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred EEEEeC--------------------------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEe
Confidence 777775 3689999999999999999744221 111
Q ss_pred eccc---ccCCCce--eecceeeeeee--ccc-ccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEe
Q psy11412 138 IYPD---LVKTDAA--FGSDEIMEFIQ--RNE-MRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDI 209 (290)
Q Consensus 138 ~~~~---~~~~g~~--~~~~~~~~~~~--~~~-i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv 209 (290)
..+. ..++|.. +.-+.++|... .+. ++. +|.+..|.+|.+|||||++|+++.++++|+++|+
T Consensus 237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~----------Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 237 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY----------IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp EHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE----------EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred eccceeEeccCCCeeEECcEEEEeCcccCCceeEEE----------EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 1110 0111211 11133344322 111 222 3334567889999999999999999999999999
Q ss_pred cCCC---------CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCC
Q psy11412 210 RDTA---------HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFS 279 (290)
Q Consensus 210 ~d~~---------~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~ 279 (290)
.... ....+.++++| .+|++++|+||| ++|++|.+-|
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v~vG--------------------------------~gP~h~aF~~dG-~aY~t~~lds 352 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEPELG--------------------------------LGPLHTAFDGRG-NAYTSLFLDS 352 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECCBCC--------------------------------SCEEEEEECTTS-EEEEEETTTT
T ss_pred cccccccccccCcccceEEEcCCC--------------------------------CCcceEEECCCC-eEEEEEecCC
Confidence 6310 00133444443 389999999999 9999987543
No 18
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.70 E-value=7.6e-16 Score=138.86 Aligned_cols=168 Identities=18% Similarity=0.174 Sum_probs=117.0
Q ss_pred EEEEecCCCccCCCCCCCC-CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 12 DKVIDIPAKQVQGYPGGDK-VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~-v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
-.++|+...++.... + ....|.+++++|||++||+++. ++.|.+||..+ .+.+..+..+..
T Consensus 166 i~~~d~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~---~~~~~~~~~~~~----------- 227 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAI---QNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTAD---NKILSRKKLLDD----------- 227 (353)
T ss_dssp EEEEETTTTEEEEEE---CCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTT---TEEEEEEECCCS-----------
T ss_pred EEEEcCCCCceEEEe---cCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCC---CeEEEEEEcCCC-----------
Confidence 556777777666554 3 3446899999999999999986 78999999865 344444433210
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
.....+..++|+|||+++|+++...+ .+..++..+ .+.+..++
T Consensus 228 ----------------~~~~~~~~~~~s~dg~~l~~~~~~~~---------------~v~~~d~~~---~~~~~~~~--- 270 (353)
T 3vgz_A 228 ----------------GKEHFFINISLDTARQRAFITDSKAA---------------EVLVVDTRN---GNILAKVA--- 270 (353)
T ss_dssp ----------------SSCCCEEEEEEETTTTEEEEEESSSS---------------EEEEEETTT---CCEEEEEE---
T ss_pred ----------------CCCcccceEEECCCCCEEEEEeCCCC---------------EEEEEECCC---CcEEEEEE---
Confidence 00135778999999999999876322 232233211 11111111
Q ss_pred cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412 171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII 250 (290)
Q Consensus 171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~ 250 (290)
. ..+.+++|||||++||++++.++.|.+||+.+ .+.+..++.+.
T Consensus 271 -------~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~------------------------- 314 (353)
T 3vgz_A 271 -------A-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPT------------------------- 314 (353)
T ss_dssp -------C-SSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCS-------------------------
T ss_pred -------c-CCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCC-------------------------
Confidence 1 12356999999999999998899999999853 56667666655
Q ss_pred ecccccCCcceEEEccCCCEEEEEcCC
Q psy11412 251 KGRRFTGSSQMFQLSLDGKRIYVSSSL 277 (290)
Q Consensus 251 ~~~~~~~~P~~~a~sPDG~~L~Van~~ 277 (290)
.|..++|+|||++||+++..
T Consensus 315 -------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 315 -------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -------EEEEEEECTTSCEEEEEEEC
T ss_pred -------CCCeEEEcCCCCEEEEEEcc
Confidence 68999999999999999873
No 19
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.69 E-value=4.9e-16 Score=152.68 Aligned_cols=212 Identities=13% Similarity=0.093 Sum_probs=134.2
Q ss_pred eEEEEEec--CCCccCCCCCCCCCCCceEEEEEcC----CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCC
Q psy11412 10 KADKVIDI--PAKQVQGYPGGDKVPAMVTDILISL----DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD 83 (290)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~v~~~p~~va~Sp----DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~ 83 (290)
..-.++|+ ...++...+ +++..|++++||| ||++||++++.+++|.+||..+ .+.+..+.+.+.....
T Consensus 200 ~~V~v~D~~~~t~~~~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 200 ARIDMIDLWAKEPTKVAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDT 273 (543)
T ss_dssp SEEEEEETTSSSCEEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECSSS
T ss_pred CeEEEEECcCCCCcEEEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccCcccCc
Confidence 44678888 666666555 5677899999999 9999999998889999999754 4555555442100000
Q ss_pred CceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc
Q psy11412 84 SGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM 163 (290)
Q Consensus 84 ~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i 163 (290)
. ....+..+.+++|||+++.+|+++.. .+.+..++..+ .+.+
T Consensus 274 -------------~-------~~~~~~~v~~i~~s~~~~~~~vs~~~---------------~g~i~vvd~~~---~~~l 315 (543)
T 1nir_A 274 -------------Q-------TYHPEPRVAAIIASHEHPEFIVNVKE---------------TGKVLLVNYKD---IDNL 315 (543)
T ss_dssp -------------C-------CEESCCCEEEEEECSSSSEEEEEETT---------------TTEEEEEECTT---SSSC
T ss_pred -------------c-------ccccCCceEEEEECCCCCEEEEEECC---------------CCeEEEEEecC---CCcc
Confidence 0 00012367889999999999998762 22333344322 1111
Q ss_pred cccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC----------------cee
Q psy11412 164 RSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG----------------GKI 227 (290)
Q Consensus 164 ~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G----------------g~~ 227 (290)
.. . .++.+..+.+++||||||+||+++..+++|.+||+.+ .+++..+++| +.+
T Consensus 316 ~~---~-----~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~ph~g~g~~~~~p~~g~~ 384 (543)
T 1nir_A 316 TV---T-----SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVHPKYGPV 384 (543)
T ss_dssp EE---E-----EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSBCCTTCEEEEETTTEEE
T ss_pred ee---E-----EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCCCCCCCCcccCCCCCccE
Confidence 10 0 0112345678999999999999998899999999853 4555555543 111
Q ss_pred -----cCCCceEEecCCCCCCCCC-cceeecccc-cCCcceEEEccCCCEEEEEcC
Q psy11412 228 -----QSDSGVTVIDDPELDKQPD-PVIIKGRRF-TGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 228 -----~~~~~v~~~~~~~~~~~~~-~~~~~~~~~-~~~P~~~a~sPDG~~L~Van~ 276 (290)
..+++|+||+......... -..+.-... ++++..++|+|||++|||++.
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 1357788888654110000 111111221 246789999999999999974
No 20
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=2.4e-15 Score=134.49 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=105.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d-~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
....|..+++||||++||+++..++.|.+|++.. .+..+.+..+..+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------------------------- 83 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-------------------------------- 83 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--------------------------------
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--------------------------------
Confidence 3446888999999999999998779999999962 2333343332221
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|.+++|+|||++||+++.. ++.+.+++..+-.....+.. +.....+..++|||
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~---------------~~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~ 138 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYN---------------AGNVSVTRLEDGLPVGVVDV----------VEGLDGCHSANISP 138 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETT---------------TTEEEEEEEETTEEEEEEEE----------ECCCTTBCCCEECT
T ss_pred CCCcEEEEcCCCCEEEEEecC---------------CCeEEEEECCCCcccccccc----------ccCCCCceEEEECC
Confidence 378999999999999998762 22333343310000111111 11223467799999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEee--EEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 267 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~--~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD 267 (290)
||++||+++..++.|.+||+...+....+. .+.... +..|+.++|+||
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~pd 188 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE------------------------------GAGPRHMVFHPN 188 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST------------------------------TCCEEEEEECTT
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC------------------------------CCCcceEEECCC
Confidence 999999999788999999996433333222 221111 126899999999
Q ss_pred CCEEEEEcC
Q psy11412 268 GKRIYVSSS 276 (290)
Q Consensus 268 G~~L~Van~ 276 (290)
|++||+++.
T Consensus 189 g~~l~~~~~ 197 (343)
T 1ri6_A 189 EQYAYCVNE 197 (343)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEEeC
Confidence 999999874
No 21
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=6.4e-16 Score=142.75 Aligned_cols=169 Identities=9% Similarity=0.184 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.++++||||++||+++.+ +|.+|++...+....+..... ++.|.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~--------------------------------~g~~~ 86 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPI--------------------------------GGHPR 86 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEEC--------------------------------CSSGG
T ss_pred CCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeec--------------------------------CCCCc
Confidence 68899999999999999974 999999962222221111101 12478
Q ss_pred EEEEccCCCE--EEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc-cccCccccCccccCCCCceeEEEEccC
Q psy11412 114 MFQLSLDGKR--IYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM-RSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 114 ~vafsPdG~~--lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i-~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
+++|+|||++ +|+++. .....+..... ..++.+.++++.. ...+ ..+. .+.......+.+++||||
T Consensus 87 ~~~~spdg~~l~~~~~~~--~~~~~~~~~~~-~~~g~v~v~~~~~---~g~~~~~~~-----~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQ--PPYAVYANPFY-KFAGYGNVFSVSE---TGKLEKNVQ-----NYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp GGCTTSCCEEEEEEECSS--TTCCEEEEEES-SSCCEEEEEEECT---TCCEEEEEE-----EEECCTTCCEEEEEECTT
T ss_pred cEEECCCCCEEEEEEecC--Ccceeccceee-cCCceEEEEccCC---CCcCcceEe-----eEEeCCCCcceEEEECCC
Confidence 8999999996 455441 00000000000 0011222222210 0000 0000 000012246788999999
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
|++||++++++++|.+||+...+....+..+.... -+.+|++++|||||++
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-----------------------------~g~~p~~~~~spdg~~ 206 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-----------------------------PGDHPRWVAMHPTGNY 206 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-----------------------------TTCCEEEEEECTTSSE
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-----------------------------CCCCCCEeEECCCCCE
Confidence 99999999889999999996223333344443210 0127999999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||+++.
T Consensus 207 l~v~~~ 212 (365)
T 1jof_A 207 LYALME 212 (365)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999986
No 22
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.65 E-value=9.2e-15 Score=134.23 Aligned_cols=164 Identities=20% Similarity=0.275 Sum_probs=115.5
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
-++.|+...+..... .....+.+++++|||++||+++..+++|++||+.+ .+.+..+..+
T Consensus 14 v~v~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~~-------------- 73 (391)
T 1l0q_A 14 ISVIDVTSNKVTATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG-------------- 73 (391)
T ss_dssp EEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS--------------
T ss_pred EEEEECCCCeEEEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC---CeEEEEEECC--------------
Confidence 567777776665544 44557899999999999998887789999999864 3444333222
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
..+..++|+|||++||+++.. .+.+.+++... .+.+..
T Consensus 74 ------------------~~v~~~~~spdg~~l~~~~~~---------------~~~v~v~d~~~---~~~~~~------ 111 (391)
T 1l0q_A 74 ------------------SSPQGVAVSPDGKQVYVTNMA---------------SSTLSVIDTTS---NTVAGT------ 111 (391)
T ss_dssp ------------------SSEEEEEECTTSSEEEEEETT---------------TTEEEEEETTT---TEEEEE------
T ss_pred ------------------CCccceEECCCCCEEEEEECC---------------CCEEEEEECCC---CeEEEE------
Confidence 478899999999999988752 12333333321 111111
Q ss_pred CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
+..+..+..++|+|||++||+++..++.|.+||+.. .+.+..+..+.
T Consensus 112 ----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~-------------------------- 158 (391)
T 1l0q_A 112 ----VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT---KAVINTVSVGR-------------------------- 158 (391)
T ss_dssp ----EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECCS--------------------------
T ss_pred ----EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEecCC--------------------------
Confidence 112235678999999999998887899999999853 34555444433
Q ss_pred cccccCCcceEEEccCCCEEEEEcC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.|..++|+|||++||+++.
T Consensus 159 ------~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 159 ------SPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp ------SEEEEEECTTSSEEEEEET
T ss_pred ------CcceEEECCCCCEEEEEeC
Confidence 6899999999999988854
No 23
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.65 E-value=1.5e-15 Score=143.67 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=90.3
Q ss_pred EEEcCCCCEEEEEeCC----CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 38 ILISLDDRYLYTSNWM----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 38 va~SpDGr~Lyva~~~----~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..|||++|||+|.. +++|.++|.. ..+++.++.+| ..|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---t~~v~~~I~vG--------------------------------~~P- 81 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE---AGRVIGMIDGG--------------------------------FLP- 81 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT---TTEEEEEEEEC--------------------------------SSC-
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC---CCeEEEEEECC--------------------------------CCC-
Confidence 3567999999999986 7899999975 36777777765 467
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
|++|||||++|||+|...+.... .+..+.+.++|. ...+.+.+++... +-....+..|.+++||||||+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~------G~~~~~VsviD~---~t~~v~~~I~v~~--g~r~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIAR------GERTDYVEVFDP---VTLLPTADIELPD--APRFLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTE------EEEEEEEEEECT---TTCCEEEEEEETT--CCCCCBSCCGGGEEECTTSSE
T ss_pred cEEECCCCCEEEEEccccccccc------CCCCCEEEEEEC---CCCeEEEEEECCC--ccccccCCCCceEEEcCCCCE
Confidence 49999999999999852100000 000122333333 2233344332210 000001236788999999999
Q ss_pred EEEEeCC-CCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 194 LYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 194 Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
||++|+. +++|+|+|+.. .+.+++|++++
T Consensus 151 lyVan~~~~~~VsVID~~t---~~vv~tI~v~g 180 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEG---KAFKRMLDVPD 180 (386)
T ss_dssp EEEEECSSSCEEEEEETTT---TEEEEEEECCS
T ss_pred EEEEEcCCCCeEEEEECCC---CcEEEEEECCC
Confidence 9999975 78999999853 67888887654
No 24
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.64 E-value=1.5e-14 Score=132.31 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=102.7
Q ss_pred CCceEEEEEcCCCCEEEEEeC---CCCeEEEEEcCCC-CCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412 32 PAMVTDILISLDDRYLYTSNW---MHGDIRQYDIRDT-AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR 107 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~---~~g~V~v~dv~d~-~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 107 (290)
...|..++|||||++||+++. ..+.|.+|++... +..+.+.....+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------------------ 98 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------------------ 98 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------------------
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------------------
Confidence 346888999999999999987 3589999999653 333444332221
Q ss_pred cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecc-eeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412 108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSD-EIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL 186 (290)
Q Consensus 108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~ 186 (290)
+..|.++++ ||++||+++...+.+.++.... ++ .+..+ .... ....+... .......+..++
T Consensus 99 -~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~---~g-~~~~~~~~~~--------~~g~~~~~--~~~~~~~~~~~~ 161 (361)
T 3scy_A 99 -GADPCYLTT--NGKNIVTANYSGGSITVFPIGQ---DG-ALLPASDVIE--------FKGSGPDK--ERQTMPHLHCVR 161 (361)
T ss_dssp -SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT---TS-CBCSCSEEEE--------CCCCCSCT--TTCSSCCEEEEE
T ss_pred -CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC---CC-cCcccceeEE--------ccCCCCCc--cccCCCcceEEE
Confidence 257889998 9999999986333322221110 11 11000 0000 00000000 000123567899
Q ss_pred EccCCCEEEEEeCCCCcEEEEEecCCCC------ceEe---eEEeeCceecCCCceEEecCCCCCCCCCcceeecccccC
Q psy11412 187 ISLDDRYLYTSNWMHGDIRQYDIRDTAH------PVLV---GQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 257 (290)
Q Consensus 187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~------~~~v---~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (290)
|||||++||+++.+++.|.+|++..... .... ..+.... +.
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------~~ 211 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP------------------------------GS 211 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT------------------------------TC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC------------------------------CC
Confidence 9999999999998899999999964321 2111 1111110 23
Q ss_pred CcceEEEccCCCEEEEEcC
Q psy11412 258 SSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 258 ~P~~~a~sPDG~~L~Van~ 276 (290)
+|++++|+|||++||+++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp CEEEEEECTTSSEEEEEET
T ss_pred CCeEEEEcCCCCEEEEEcC
Confidence 7999999999999999985
No 25
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.64 E-value=1.6e-14 Score=132.54 Aligned_cols=165 Identities=17% Similarity=0.256 Sum_probs=116.7
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
.-.++|+...+..... .....+.+++++|||++||+++..++.|.+||+.. .+.+..+..
T Consensus 97 ~v~v~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~-------------- 156 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTV---KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT---KAVINTVSV-------------- 156 (391)
T ss_dssp EEEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEEC--------------
T ss_pred EEEEEECCCCeEEEEE---eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEec--------------
Confidence 4567788877765554 45567899999999999998888899999999864 333333222
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
+..|..++|+|||++||+++.. ++.+.+++... .+.+..
T Consensus 157 ------------------~~~~~~~~~~~dg~~l~~~~~~---------------~~~v~~~d~~~---~~~~~~----- 195 (391)
T 1l0q_A 157 ------------------GRSPKGIAVTPDGTKVYVANFD---------------SMSISVIDTVT---NSVIDT----- 195 (391)
T ss_dssp ------------------CSSEEEEEECTTSSEEEEEETT---------------TTEEEEEETTT---TEEEEE-----
T ss_pred ------------------CCCcceEEECCCCCEEEEEeCC---------------CCEEEEEECCC---CeEEEE-----
Confidence 2578899999999999988762 22333333321 111111
Q ss_pred cCccccCCCCceeEEEEccCCCEEEEEeC--CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412 171 LGSWKYPARSMVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV 248 (290)
Q Consensus 171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~ 248 (290)
+.....+..++|+|||++||+++. .++.|.+||+.. .+.+..++.+.
T Consensus 196 -----~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~----------------------- 244 (391)
T 1l0q_A 196 -----VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGP----------------------- 244 (391)
T ss_dssp -----EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCS-----------------------
T ss_pred -----EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---CeEEEEEecCC-----------------------
Confidence 112245678999999999999986 678999999853 35555554433
Q ss_pred eeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 249 IIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 249 ~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.|..++|+|||++||+++.
T Consensus 245 ---------~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 245 ---------DPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp ---------SEEEEEECTTSSEEEEEET
T ss_pred ---------CccEEEEccCCCEEEEEcC
Confidence 6889999999999998853
No 26
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.63 E-value=8.7e-15 Score=130.53 Aligned_cols=209 Identities=16% Similarity=0.101 Sum_probs=121.8
Q ss_pred EEEEecCCCccCCCCCCCCCCC---ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPA---MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV 88 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~---~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v 88 (290)
-.++|+...++.... +++. .|.++++||||++||+++..++.|.+||+.+. +.+..+..+.. .
T Consensus 13 v~~~d~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~---~----- 78 (337)
T 1pby_B 13 LVVIDTEKMAVDKVI---TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTP---E----- 78 (337)
T ss_dssp EEEEETTTTEEEEEE---ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBT---T-----
T ss_pred EEEEECCCCcEEEEE---EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCc---c-----
Confidence 457788777766554 4555 68999999999999999988899999998652 33333333210 0
Q ss_pred ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCC---CCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412 89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF---SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS 165 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~---~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 165 (290)
..+..|.+++|+|||++||+++... ..+.. ...+.+.+++... .+.+..
T Consensus 79 ------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~-------~~~~~i~v~d~~~---~~~~~~ 130 (337)
T 1pby_B 79 ------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFE-------VQPTRVALYDAET---LSRRKA 130 (337)
T ss_dssp ------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEE-------ECCCEEEEEETTT---TEEEEE
T ss_pred ------------------cccccccceEECCCCCEEEEEeccccccccccc-------ccCceEEEEECCC---CcEEEE
Confidence 0013688899999999999985210 00000 0012333333321 111111
Q ss_pred cCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc-----eecCCC---------
Q psy11412 166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG-----KIQSDS--------- 231 (290)
Q Consensus 166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg-----~~~~~~--------- 231 (290)
++.+..+.+++|||||++||++ ++.|.+||+.. .+.+..++.+. .+.+++
T Consensus 131 ----------~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 194 (337)
T 1pby_B 131 ----------FEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEA---GTLVEDKPIQSWEAETYAQPDVLAVWNQHES 194 (337)
T ss_dssp ----------EECCSSCCCEEECTTSSCEEEE---SSSEEEEETTT---TEEEEEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred ----------EeCCCCcceeEECCCCCEEEEe---CCeEEEEECCC---CcEeeeeeccccCCCceeCCCccEEeeeccC
Confidence 1112345679999999999998 46899999853 34444444432 111111
Q ss_pred -------------------------ceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCC
Q psy11412 232 -------------------------GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWD 282 (290)
Q Consensus 232 -------------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~ 282 (290)
.|.++|....... .+.-......|..++|+|||++||+++..+..||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d 266 (337)
T 1pby_B 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD 266 (337)
T ss_dssp TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEECTTSSEEEEEESEEEEEE
T ss_pred CCceeeeeeccccccccccccccccceEEEeCCCCCce----EeecCCCCCceeeEEECCCCCEEEEeCCeEEEEE
Confidence 2456665432110 0000011235778999999999998866555554
No 27
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.63 E-value=9.2e-15 Score=131.72 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=104.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC------CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412 31 VPAMVTDILISLDDRYLYTSNWM------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 104 (290)
Q Consensus 31 v~~~p~~va~SpDGr~Lyva~~~------~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (290)
+...|.++++||||++||+++.. +++|.+||..+ .+.+..+..+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~--------------------------- 88 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIHND--------------------------- 88 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEEES---------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEecC---------------------------
Confidence 45679999999999999999875 67899999764 3344444332
Q ss_pred ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412 105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD 184 (290)
Q Consensus 105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~ 184 (290)
..|.+++|+|||+++|+++...+ .+..++..+ .+.+..++......-....+..+.+
T Consensus 89 -----~~~~~~~~s~dg~~l~v~~~~~~---------------~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 89 -----LKPFGATINNTTQTLWFGNTVNS---------------AVTAIDAKT---GEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp -----SCCCSEEEETTTTEEEEEETTTT---------------EEEEEETTT---CCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred -----CCcceEEECCCCCEEEEEecCCC---------------EEEEEeCCC---CeeEEEEecCCCccccccCCCCCce
Confidence 46888999999999999887332 222222211 1111111110000000001124788
Q ss_pred EEEccCCCEEEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412 185 ILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 263 (290)
Q Consensus 185 i~~SpDGr~Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a 263 (290)
+++||||++||+++++ ++.|.+||+.. .+.+..++..+ ..|..++
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~-------------------------------~~~~~~~ 191 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGN---IKLKTAIQNTG-------------------------------KMSTGLA 191 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTT---TEEEEEECCCC-------------------------------TTCCCCE
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCC---CceEEEecCCC-------------------------------CccceEE
Confidence 9999999999999854 67899999853 45555554222 1588999
Q ss_pred EccCCCEEEEEcC
Q psy11412 264 LSLDGKRIYVSSS 276 (290)
Q Consensus 264 ~sPDG~~L~Van~ 276 (290)
|+|||++||+++.
T Consensus 192 ~s~dg~~l~~~~~ 204 (353)
T 3vgz_A 192 LDSEGKRLYTTNA 204 (353)
T ss_dssp EETTTTEEEEECT
T ss_pred ECCCCCEEEEEcC
Confidence 9999999999976
No 28
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=8.5e-16 Score=145.37 Aligned_cols=215 Identities=16% Similarity=0.069 Sum_probs=126.3
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC---------CCCeEEEEEcCCCCCceeeeEEeeccccc
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW---------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQ 81 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~---------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~ 81 (290)
.--|||..+.++...+ +++..|+ +++||||++||++|. .++.|.+||... .+.++.+.++...
T Consensus 60 ~V~ViD~~t~~v~~~I---~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---~~v~~~I~v~~g~- 131 (386)
T 3sjl_D 60 QQFVIDGEAGRVIGMI---DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---LLPTADIELPDAP- 131 (386)
T ss_dssp EEEEEETTTTEEEEEE---EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC-
T ss_pred EEEEEECCCCeEEEEE---ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---CeEEEEEECCCcc-
Confidence 5668999999988876 7888896 999999999999983 257899999754 5667777665200
Q ss_pred CCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc
Q psy11412 82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN 161 (290)
Q Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (290)
....|..|++++|||||++|||+|+.. .+.+.++|+. ..+
T Consensus 132 -----------------------r~~~g~~P~~~a~spDGk~lyVan~~~--------------~~~VsVID~~---t~~ 171 (386)
T 3sjl_D 132 -----------------------RFLVGTYPWMTSLTPDGKTLLFYQFSP--------------APAVGVVDLE---GKA 171 (386)
T ss_dssp -----------------------CCCBSCCGGGEEECTTSSEEEEEECSS--------------SCEEEEEETT---TTE
T ss_pred -----------------------ccccCCCCceEEEcCCCCEEEEEEcCC--------------CCeEEEEECC---CCc
Confidence 001246899999999999999998621 1233333332 233
Q ss_pred cccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEE--ecCCCC-ceE--eeEEeeCce---ecCCCce
Q psy11412 162 EMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYD--IRDTAH-PVL--VGQIFLGGK---IQSDSGV 233 (290)
Q Consensus 162 ~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~D--v~d~~~-~~~--v~~i~~Gg~---~~~~~~v 233 (290)
.+.+++.....+ ..|.+.. .-+++++||+++|+.....+.+..-. +.++.. +.. .......|+ ++.+++|
T Consensus 172 vv~tI~v~g~~~-~~P~g~~-~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V 249 (386)
T 3sjl_D 172 FKRMLDVPDCYH-IFPTAPD-TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI 249 (386)
T ss_dssp EEEEEECCSEEE-EEEEETT-EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred EEEEEECCCcce-eecCCCc-eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEE
Confidence 444333210000 1111111 12589999999999986556662210 111111 111 111112332 2556778
Q ss_pred EEecCCCCCC-CCCcc-------eeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 234 TVIDDPELDK-QPDPV-------IIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 234 ~~~~~~~~~~-~~~~~-------~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
+++|..+... .-.+. ...|++. ++.+.++++||+++|||++.
T Consensus 250 ~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 250 HQIDLSSGDAKFLPAVEALTEAERADGWRP-GGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp EEEECTTSSCEECCCEESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEE
T ss_pred EEEECCCCcceeecceeccccccccccccC-CCcceeeECCCCCeEEEEec
Confidence 9998754321 00100 0122222 23456999999999999863
No 29
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=1.3e-14 Score=136.14 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=85.9
Q ss_pred EEEcCCCCEEEEEeC-CCC---eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 38 ILISLDDRYLYTSNW-MHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 38 va~SpDGr~Lyva~~-~~g---~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
+..+||++++|++|. +.+ +|.+||..+ .+++..+..| ..|
T Consensus 26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t---~~~~~~i~~g--------------------------------~~p- 69 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGS---GSILGHVNGG--------------------------------FLP- 69 (373)
T ss_pred ccCCCCCCEEEEeCCcccCCccEEEEEECCC---CeEEEEecCC--------------------------------CCC-
Confidence 456799999999997 555 889999754 4455554443 578
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+++|||||++|||+|++....... ..++.+..+|... .+.+..++.... . ....+..|.+++||||||+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg------~~~~~v~viD~~t---~~~~~~i~~~~~-~-~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKG------KRTDYVEVFDPVT---FLPIADIELPDA-P-RFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred CeEECCCCCEEEEEeccccccccC------CCCCeEEEEECCC---CcEEEEEECCCc-c-ccccCCCccceEECCCCCE
Confidence 999999999999998642211000 0122333344322 223333221100 0 0001245778999999999
Q ss_pred EEEEeCC-CCcEEEEEecCCCCceEeeE-EeeCc
Q psy11412 194 LYTSNWM-HGDIRQYDIRDTAHPVLVGQ-IFLGG 225 (290)
Q Consensus 194 Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~-i~~Gg 225 (290)
||++|+. +++|.++| .. .+.+.+ +++++
T Consensus 139 l~v~n~~~~~~v~viD-~t---~~~~~~~i~~~~ 168 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QG---GSSDDQLLSSPT 168 (373)
T ss_pred EEEEecCCCCeEEEEE-CC---CCEEeEEcCCCc
Confidence 9999976 68899998 53 456677 66643
No 30
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=8.4e-15 Score=134.07 Aligned_cols=174 Identities=13% Similarity=0.008 Sum_probs=115.1
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
.-.++|..+.++...+ +....|+++++++|| +||+++..++.|.+||..+ .++...+.++...
T Consensus 65 ~v~viD~~t~~~~~~i---~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g~~~---------- 127 (328)
T 3dsm_A 65 VIFAIDINTFKEVGRI---TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT---YEITGYIECPDMD---------- 127 (328)
T ss_dssp EEEEEETTTCCEEEEE---ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT---TEEEEEEECTTCC----------
T ss_pred EEEEEECcccEEEEEc---CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC---CeEEEEEEcCCcc----------
Confidence 3467888877776655 455689999999998 8999995588999999754 4555555554100
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcC-CCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-LFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS 169 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~ne-l~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~ 169 (290)
.....|.+|++ ++++|||++. ..+ .+.++|..+ .+.+..+
T Consensus 128 ----------------~~~~~p~~i~~--~~~~lyv~~~~~~~---------------~v~viD~~t---~~~~~~i--- 168 (328)
T 3dsm_A 128 ----------------MESGSTEQMVQ--YGKYVYVNCWSYQN---------------RILKIDTET---DKVVDEL--- 168 (328)
T ss_dssp ----------------TTTCBCCCEEE--ETTEEEEEECTTCC---------------EEEEEETTT---TEEEEEE---
T ss_pred ----------------ccCCCcceEEE--ECCEEEEEcCCCCC---------------EEEEEECCC---CeEEEEE---
Confidence 00137889999 7889999874 122 333333221 1112211
Q ss_pred ccCccccCCCCceeEEEEccCCCEEEEEeCCC----------CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCC
Q psy11412 170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMH----------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 239 (290)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~----------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~ 239 (290)
+.+..|.+|+++|||+ +|++++++ +.|.+||.. ..+++.++.++.
T Consensus 169 -------~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~---t~~v~~~~~~~~-------------- 223 (328)
T 3dsm_A 169 -------TIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAE---TFTVEKQFKFKL-------------- 223 (328)
T ss_dssp -------ECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETT---TTEEEEEEECCT--------------
T ss_pred -------EcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECC---CCeEEEEEecCC--------------
Confidence 1223467899999998 56666565 789999864 345666665532
Q ss_pred CCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCCCCCC
Q psy11412 240 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPW 281 (290)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~ 281 (290)
+.+|+.++|+|||++||++|+....+
T Consensus 224 ----------------g~~p~~la~~~d~~~lyv~~~~v~~~ 249 (328)
T 3dsm_A 224 ----------------GDWPSEVQLNGTRDTLYWINNDIWRM 249 (328)
T ss_dssp ----------------TCCCEEEEECTTSCEEEEESSSEEEE
T ss_pred ----------------CCCceeEEEecCCCEEEEEccEEEEE
Confidence 12799999999999999999743333
No 31
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.62 E-value=6.5e-15 Score=132.74 Aligned_cols=187 Identities=17% Similarity=0.193 Sum_probs=123.5
Q ss_pred eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 89 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~ 89 (290)
..-.+||+++.++.... +++..+....++.+|++||++++.++.|.+||..+ .++++++..+
T Consensus 44 s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t---~~v~~~i~~g------------ 105 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT---LSNIKNFTHQ------------ 105 (266)
T ss_dssp CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT---TEEEEEEECC------------
T ss_pred CEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC---CcEEEEEECC------------
Confidence 35678999999998876 67776665556667899999999999999999753 5666665442
Q ss_pred cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412 90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS 169 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~ 169 (290)
.|.++.+++||++||+++. .+ .+..+|..+ .+.++.++.+
T Consensus 106 ---------------------~~~g~glt~Dg~~l~vs~g-s~---------------~l~viD~~t---~~v~~~I~Vg 145 (266)
T 2iwa_A 106 ---------------------MKDGWGLATDGKILYGSDG-TS---------------ILYEIDPHT---FKLIKKHNVK 145 (266)
T ss_dssp ---------------------SSSCCEEEECSSSEEEECS-SS---------------EEEEECTTT---CCEEEEEECE
T ss_pred ---------------------CCCeEEEEECCCEEEEECC-CC---------------eEEEEECCC---CcEEEEEEEC
Confidence 2445678899999999874 22 232233222 2223332221
Q ss_pred ccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412 170 SLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV 248 (290)
Q Consensus 170 ~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~ 248 (290)
.. +.+ ..+.++.+. || .||++++..+.|+++|.. +.+.++.|++++.....
T Consensus 146 ~~-----~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~---tg~V~~~I~~~g~~~~~------------------ 197 (266)
T 2iwa_A 146 YN-----GHRVIRLNELEYI-NG-EVWANIWQTDCIARISAK---DGTLLGWILLPNLRKKL------------------ 197 (266)
T ss_dssp ET-----TEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETT---TCCEEEEEECHHHHHHH------------------
T ss_pred CC-----CcccccceeEEEE-CC-EEEEecCCCCeEEEEECC---CCcEEEEEECCCccccc------------------
Confidence 10 001 246678888 77 799999999999999875 46788999886420000
Q ss_pred eeecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412 249 IIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI 285 (290)
Q Consensus 249 ~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~ 285 (290)
...+......|++++|+|||++|||+|. .|.+.|
T Consensus 198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk---~~~~v~ 231 (266)
T 2iwa_A 198 IDEGFRDIDVLNGIAWDQENKRIFVTGK---LWPKLF 231 (266)
T ss_dssp HHTTCTTCCCEEEEEEETTTTEEEEEET---TCSEEE
T ss_pred ccccccccCceEEEEEcCCCCEEEEECC---CCCeEE
Confidence 0000000136899999999999999986 565544
No 32
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.61 E-value=1.8e-15 Score=145.16 Aligned_cols=122 Identities=47% Similarity=0.906 Sum_probs=95.3
Q ss_pred eecCCCceeEEEEEecCCCccCCCCCCCC-----CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEee
Q psy11412 2 YRQSDGTYKADKVIDIPAKQVQGYPGGDK-----VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL 76 (290)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~ 76 (290)
+++ +|+|++.++||+++.++...+...+ ++..|.+|.+|||||+|||+|++.|.|++||+.+++++++++.+.+
T Consensus 286 ~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 286 FYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp EEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred Eec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 444 4999999999999988776431111 2468999999999999999999999999999988788999999999
Q ss_pred cccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeeccc
Q psy11412 77 GGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD 141 (290)
Q Consensus 77 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~ 141 (290)
||.+... .++ .+.+...+||+|++|||||+|||+|+|-+.||..+|++
T Consensus 365 GG~~~~~--------------~~~---~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~ 412 (462)
T 2ece_A 365 GGIFHRA--------------DHP---AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE 412 (462)
T ss_dssp BTTTTCB--------------CCT---TSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTT
T ss_pred CCeeccc--------------ccc---ccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCC
Confidence 8532110 000 01111248999999999999999999999999888876
No 33
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.60 E-value=3.5e-14 Score=140.51 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=127.0
Q ss_pred EEEEEecC--CCccCCCCCCCCCCCceEEEEEc----CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccc----
Q psy11412 11 ADKVIDIP--AKQVQGYPGGDKVPAMVTDILIS----LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI---- 80 (290)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~~v~~~p~~va~S----pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~---- 80 (290)
.-.+||+. ..++...+ +++..|++++|| |||++|||+|+..++|.+||..+ .+.+..+.+++..
T Consensus 219 ~V~viD~~~~t~~~v~~i---~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 219 KVNMIDLWMKEPTTVAEI---KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp EEEEEETTSSSCCEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTC
T ss_pred eEEEEECCCCCCcEeEEE---ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---CcEEEEEeccccccccc
Confidence 35678885 55666554 678899999999 79999999999999999999643 5556656554210
Q ss_pred --cC----------------------CCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcce
Q psy11412 81 --QS----------------------DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDK 136 (290)
Q Consensus 81 --~~----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~ 136 (290)
.+ .+.+++++..... ...+.....+..|+++.|+||||++|+++...+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn---- 364 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEISAERFLHDGGLDGSHRYFITAANARN---- 364 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT----
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeeeccccccCceECCCCCEEEEEeCCCC----
Confidence 00 1222232211100 001112233568899999999999999987332
Q ss_pred eecccccCCCceeecceeeeeeecccccccCc-cccCccccCCCCceeEEEEccCCCEEEEEe-CCCCcEEEEEecCCCC
Q psy11412 137 EIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL-SSLGSWKYPARSMVTDILISLDDRYLYTSN-WMHGDIRQYDIRDTAH 214 (290)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~-~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~-r~~~~V~v~Dv~d~~~ 214 (290)
.+.++|..+ .+.+..++. + ..|.+..... .++||++.+|+++ -++++|++||.....+
T Consensus 365 -----------~V~ViD~~t---~kl~~~i~vgg-----~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 365 -----------KLVVIDTKE---GKLVAIEDTGG-----QTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp -----------EEEEEETTT---TEEEEEEECSS-----SSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred -----------eEEEEECCC---CcEEEEEeccC-----cCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 333333322 223333222 1 1122211112 2699988888765 4678999999854222
Q ss_pred ----ceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcCC
Q psy11412 215 ----PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 277 (290)
Q Consensus 215 ----~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~ 277 (290)
.+.++++++++. ++-.+.++|||++|||+|.+
T Consensus 425 ~~~~~kvv~~i~~~g~-------------------------------g~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 425 PDNAWKILDSFPALGG-------------------------------GSLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp TTTBTSEEEEEECSCS-------------------------------CCCCEECCTTCSEEEEECTT
T ss_pred ccccCEEEEEEecCCC-------------------------------CCEEEEeCCCCCeEEEecCC
Confidence 567888877551 56779999999999999864
No 34
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=8.2e-15 Score=140.36 Aligned_cols=134 Identities=12% Similarity=0.040 Sum_probs=88.9
Q ss_pred CCCCEEEEEeCCC----CeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412 42 LDDRYLYTSNWMH----GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL 117 (290)
Q Consensus 42 pDGr~Lyva~~~~----g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf 117 (290)
||++++||+|.+. ++|.++|..+ .+++.++.+| ..| +|+|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~vG--------------------------------~~P-gia~ 125 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDGG--------------------------------FLP-HPVA 125 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC--------------------------------SSC-EEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEECC--------------------------------CCC-ceEE
Confidence 7999999999865 7999999754 6778877775 478 9999
Q ss_pred ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412 118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS 197 (290)
Q Consensus 118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs 197 (290)
||||++|||+|...+.... ...++.+.++|.. ..+.+.+++.... . ....+..|.+++||||||+||++
T Consensus 126 SpDgk~lyVan~~~~~~~~------G~~~~~VsviD~~---t~~vv~~I~v~g~-~-r~~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 126 AEDGSFFAQASTVFERIAR------GKRTDYVEVFDPV---TFLPIADIELPDA-P-RFLVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CTTSSCEEEEEEEEEETTE------EEEEEEEEEECTT---TCCEEEEEEETTC-C-CCCBSCCGGGSEECTTSSEEEEE
T ss_pred CCCCCEEEEEecccccccc------CCCCCEEEEEECC---CCcEEEEEECCCc-c-ccccCCCcceEEEcCCCCEEEEE
Confidence 9999999999842100000 0011233333332 2333333321100 0 00012357789999999999999
Q ss_pred eCC-CCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 198 NWM-HGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 198 ~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
|+. +++|+++|+. ..+.+++|++++
T Consensus 195 n~~~~~~VsVID~~---t~kvv~~I~v~g 220 (426)
T 3c75_H 195 QFSPAPAVGVVDLE---GKTFDRMLDVPD 220 (426)
T ss_dssp ECSSSCEEEEEETT---TTEEEEEEECCS
T ss_pred ecCCCCeEEEEECC---CCeEEEEEEcCC
Confidence 986 7899999885 367888998865
No 35
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.57 E-value=1.8e-13 Score=127.21 Aligned_cols=164 Identities=21% Similarity=0.243 Sum_probs=112.7
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeC-------CCCeEEEEEcCCCCCceeeeEEeecccccCCC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNW-------MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS 84 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~-------~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~ 84 (290)
-.++|+...+..... .....+.+++++|||++|++++. .+|.|.+||+.+. +.+..+...
T Consensus 236 i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~~~~~------- 302 (433)
T 3bws_A 236 ISVIDRKTKLEIRKT---DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDTIGPP------- 302 (433)
T ss_dssp EEEEETTTTEEEEEC---CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEEEEEE-------
T ss_pred EEEEECCCCcEEEEe---cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEeeccCC-------
Confidence 456777766655544 45567999999999999999985 4679999998652 333322111
Q ss_pred ceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccc
Q psy11412 85 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMR 164 (290)
Q Consensus 85 ~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 164 (290)
..+++++|+|+|+++|+++... +.+.+++... .+.+.
T Consensus 303 -------------------------~~~~~~~~~~~g~~l~~~~~~~---------------~~v~v~d~~~---~~~~~ 339 (433)
T 3bws_A 303 -------------------------GNKRHIVSGNTENKIYVSDMCC---------------SKIEVYDLKE---KKVQK 339 (433)
T ss_dssp -------------------------ECEEEEEECSSTTEEEEEETTT---------------TEEEEEETTT---TEEEE
T ss_pred -------------------------CCcceEEECCCCCEEEEEecCC---------------CEEEEEECCC---CcEEE
Confidence 3688999999999999986522 2333333221 11111
Q ss_pred ccCccccCccccCCCCceeEEEEccCCCEEEEEeCCC--------------CcEEEEEecCCCCceEeeEEeeCceecCC
Q psy11412 165 SMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH--------------GDIRQYDIRDTAHPVLVGQIFLGGKIQSD 230 (290)
Q Consensus 165 ~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~--------------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~ 230 (290)
. ++....+..++++|||++||+++..+ +.|.+||+.+ .+.+..+..+.
T Consensus 340 ~----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~~~----- 401 (433)
T 3bws_A 340 S----------IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEAGN----- 401 (433)
T ss_dssp E----------EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEECSS-----
T ss_pred E----------ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecCCC-----
Confidence 1 11224577899999999999998653 4899999853 45555554433
Q ss_pred CceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 231 SGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.|..++|+|||++|++++.
T Consensus 402 ---------------------------~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 402 ---------------------------QPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp ---------------------------SEEEEEECTTSCEEEEEET
T ss_pred ---------------------------CCceEEEcCCCCEEEEEEC
Confidence 6899999999999999864
No 36
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.55 E-value=1.4e-13 Score=123.40 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=88.9
Q ss_pred EEEEecCCCccCCCCCCCCCCC--ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPA--MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 89 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~--~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~ 89 (290)
-.++|+...++.... +++. .|.+++++|||+++|+++..++.|.+||+.+ .+.+..+..++.
T Consensus 23 v~~~d~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~~~~~~~~~~~~---------- 86 (349)
T 1jmx_B 23 LHVVDVASDTVYKSC---VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSV---------- 86 (349)
T ss_dssp EEEEETTTTEEEEEE---ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCS----------
T ss_pred EEEEECCCCcEEEEE---ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC---CcEEEEEEcccc----------
Confidence 457787777665544 4555 6899999999999999998889999999864 344433333210
Q ss_pred cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCC-CcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412 90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFS-PWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL 168 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~-~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~ 168 (290)
+ ...+..|.+++|+|||++||++++... ..+. +. ...+.+.+++..+ .+....+.
T Consensus 87 --------~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~--~~---~~~~~i~~~d~~~---~~~~~~~~- 142 (349)
T 1jmx_B 87 --------P-------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDH--YV---VKPPRLEVFSTAD---GLEAKPVR- 142 (349)
T ss_dssp --------T-------TEEEECSSCEEECTTSSEEEEEEEEEEECSSC--EE---ECCCEEEEEEGGG---GGGBCCSE-
T ss_pred --------c-------ccccccccceEECCCCCEEEEEcccccccccc--cc---cCCCeEEEEECCC---ccccceee-
Confidence 0 000135788999999999999874100 0000 00 0112333333321 11111100
Q ss_pred cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
....+..+..++|||||+ ||+++ +.|.+||+.+
T Consensus 143 ------~~~~~~~~~~~~~s~dg~-l~~~~---~~i~~~d~~~ 175 (349)
T 1jmx_B 143 ------TFPMPRQVYLMRAADDGS-LYVAG---PDIYKMDVKT 175 (349)
T ss_dssp ------EEECCSSCCCEEECTTSC-EEEES---SSEEEECTTT
T ss_pred ------eccCCCcccceeECCCCc-EEEcc---CcEEEEeCCC
Confidence 011123466789999999 88864 3499998753
No 37
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=4.2e-14 Score=129.39 Aligned_cols=171 Identities=12% Similarity=0.178 Sum_probs=107.8
Q ss_pred EEEEecCCCccCCCCCCCCCCC------ceEEEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCCceeeeEEeecccccCCC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPA------MVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS 84 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~------~p~~va~SpDGr~Lyva~~~-~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~ 84 (290)
-.++|....++.... +++. .|+++++ ++++||+++++ +++|.+||..+ .+++..+..+
T Consensus 107 v~~iD~~t~~~~~~i---~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t---~~~~~~i~~g------- 171 (328)
T 3dsm_A 107 IFIINPKTYEITGYI---ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET---DKVVDELTIG------- 171 (328)
T ss_dssp EEEEETTTTEEEEEE---ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT---TEEEEEEECS-------
T ss_pred EEEEECCCCeEEEEE---EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC---CeEEEEEEcC-------
Confidence 457788877776655 5666 8999999 78899999984 89999999864 3445444333
Q ss_pred ceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccc
Q psy11412 85 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM 163 (290)
Q Consensus 85 ~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i 163 (290)
..|++++++|||+ +|+++... .... +. .+.+.+.+++..+ .+..
T Consensus 172 -------------------------~~p~~i~~~~dG~-l~v~~~~~~~~~~---~~---~~~~~v~~id~~t---~~v~ 216 (328)
T 3dsm_A 172 -------------------------IQPTSLVMDKYNK-MWTITDGGYEGSP---YG---YEAPSLYRIDAET---FTVE 216 (328)
T ss_dssp -------------------------SCBCCCEECTTSE-EEEEBCCBCTTCS---SC---BCCCEEEEEETTT---TEEE
T ss_pred -------------------------CCccceEEcCCCC-EEEEECCCccCCc---cc---cCCceEEEEECCC---CeEE
Confidence 5788999999998 55554311 0000 00 0012333333221 1111
Q ss_pred cccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCC
Q psy11412 164 RSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDK 243 (290)
Q Consensus 164 ~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~ 243 (290)
..+ .++.+..|.+|+|||||++||+++. .|.+||+... .......++.+
T Consensus 217 ~~~--------~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~-~~~~~~~~~~~------------------- 265 (328)
T 3dsm_A 217 KQF--------KFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEAD-RVPVRPFLEFR------------------- 265 (328)
T ss_dssp EEE--------ECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCS-SCCSSCSBCCC-------------------
T ss_pred EEE--------ecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCC-ceeeeeeecCC-------------------
Confidence 111 1222346889999999999999985 8999987431 11000111111
Q ss_pred CCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412 244 QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS 275 (290)
Q Consensus 244 ~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van 275 (290)
+..|++|+++|++++|||+|
T Consensus 266 ------------~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 266 ------------DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ------------SSCEEEEEECTTTCCEEEEE
T ss_pred ------------CCceEEEEEcCCCCeEEEEc
Confidence 13799999999999999998
No 38
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.54 E-value=1.5e-13 Score=122.45 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=46.6
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 260 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~ 260 (290)
.+.+++|||||++||++ ++.|.+||+.. .+.+..+..+. .|.
T Consensus 242 ~~~~~~~s~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~--------------------------------~~~ 283 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA---YNVLESFDLEK---NASIKRVPLPH--------------------------------SYY 283 (337)
T ss_dssp CEEEEEECTTSSEEEEE---ESEEEEEETTT---TEEEEEEECSS--------------------------------CCC
T ss_pred ceeeEEECCCCCEEEEe---CCeEEEEECCC---CcCcceecCCC--------------------------------cee
Confidence 46679999999999998 47899999853 45566655444 689
Q ss_pred eEEEccCCCEEEEEcC
Q psy11412 261 MFQLSLDGKRIYVSSS 276 (290)
Q Consensus 261 ~~a~sPDG~~L~Van~ 276 (290)
.++|+|||++||+++.
T Consensus 284 ~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGA 299 (337)
T ss_dssp EEEECTTSCEEEEESB
T ss_pred eEEECCCCCEEEEEcC
Confidence 9999999999999854
No 39
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.51 E-value=5.7e-14 Score=132.06 Aligned_cols=181 Identities=10% Similarity=-0.122 Sum_probs=107.9
Q ss_pred EEEEEecCCCccCCCCCCCCCC--------CceEEEEEcCCCCEEEEEeCC-CCeEEE--EEcCCCCCceeeeEEeeccc
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVP--------AMVTDILISLDDRYLYTSNWM-HGDIRQ--YDIRDTAHPVLVGQIFLGGK 79 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~--------~~p~~va~SpDGr~Lyva~~~-~g~V~v--~dv~d~~~~~~~~~i~~g~~ 79 (290)
.-.|||+...++...+ +++ ..|++++|||||++|||+|++ ++.|.+ +|..+ +.++.+++.
T Consensus 97 ~VsviD~~T~~vv~~I---~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t------v~~i~v~~~ 167 (368)
T 1mda_H 97 YVEVFDPVTFLPIADI---ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD------DQLTKSASC 167 (368)
T ss_dssp EEEEECTTTCCEEEEE---EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE------EEEEECSSC
T ss_pred EEEEEECCCCCEEEEE---ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh------ceEEECCCc
Confidence 4578899998888876 554 479999999999999999986 567888 77643 222222210
Q ss_pred -------------ccCCCceEEecCCC-----CcC------------CC--------------Ccc-----------eee
Q psy11412 80 -------------IQSDSGVTVIDDPE-----LDK------------QP--------------DPV-----------IIK 104 (290)
Q Consensus 80 -------------~~~~~~~~v~~~~~-----~~~------------~~--------------~~~-----------~~~ 104 (290)
..+.+.+.+++... ... .| ... +..
T Consensus 168 ~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~ 247 (368)
T 1mda_H 168 FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247 (368)
T ss_dssp CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC
T ss_pred eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEE
Confidence 01122333332211 000 00 000 000
Q ss_pred cc--------ccCCCceE---EEEccCCCEEEEEcC-C-CCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 105 GR--------RFTGSSQM---FQLSLDGKRIYVSSS-L-FSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 105 ~~--------~~g~gPr~---vafsPdG~~lYv~ne-l-~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
.. ..+..|.+ ++|+|||++|||+++ . .... ...+.+. ++|....+.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~---------~~~~~~~---ViD~~t~~vv~~i~v--- 312 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL---------AAAENTS---SVTASVGQTSGPISN--- 312 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT---------SCEEEEE---EEESSSCCEEECCEE---
T ss_pred EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc---------ccCCCEE---EEECCCCeEEEEEEC---
Confidence 00 01112333 899999999999754 1 1000 0001222 334333445554332
Q ss_pred CccccCCCCceeEEEEccCCCEEEEEeC-CCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 172 GSWKYPARSMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r-~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
+..|.+|+|+|||++||++|+ .+|+|+|||+. +.+.+.+|++|+
T Consensus 313 -------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~---t~kvv~~I~vg~ 357 (368)
T 1mda_H 313 -------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA---SDQDQSSVELDK 357 (368)
T ss_dssp -------EEEECEEEECCSSSCEEEEEETTTTEEEEEESS---SCEEEEECCCCS
T ss_pred -------CCCcceEEECCCCCEEEEEccCCCCeEEEEECC---CCcEEEEEECCC
Confidence 235788999999999999998 69999999985 478899998887
No 40
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.50 E-value=9.7e-13 Score=122.31 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=113.3
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
-++.|+...+..... ..-...+..++++|||++||+++..++.|.+||+.. .+.+..+..
T Consensus 193 v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~--------------- 252 (433)
T 3bws_A 193 VHVFDLKTLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDK--------------- 252 (433)
T ss_dssp EEEEETTTCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCC---------------
T ss_pred EEEEECCCceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecC---------------
Confidence 456666655544332 012447899999999999999998889999999864 233322211
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
+..+..++|+|+|+++|+++...+.+. ..++.+..++..+ .+.+..
T Consensus 253 -----------------~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~~dg~i~~~d~~~---~~~~~~------ 298 (433)
T 3bws_A 253 -----------------IGLPRGLLLSKDGKELYIAQFSASNQE--------SGGGRLGIYSMDK---EKLIDT------ 298 (433)
T ss_dssp -----------------CSEEEEEEECTTSSEEEEEEEESCTTC--------SCCEEEEEEETTT---TEEEEE------
T ss_pred -----------------CCCceEEEEcCCCCEEEEEECCCCccc--------cCCCeEEEEECCC---CcEEee------
Confidence 146889999999999999864211110 0012333333221 111111
Q ss_pred CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
+.....+..++|+|||++||+++..++.|.+||+.. .+.+..++.+.
T Consensus 299 ----~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~~-------------------------- 345 (433)
T 3bws_A 299 ----IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPVFD-------------------------- 345 (433)
T ss_dssp ----EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEECSS--------------------------
T ss_pred ----ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecCCC--------------------------
Confidence 001134678999999999999987899999999853 44555554333
Q ss_pred cccccCCcceEEEccCCCEEEEEcC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.|..++|+|||++||+++.
T Consensus 346 ------~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 346 ------KPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp ------SEEEEEECTTSSEEEEEEC
T ss_pred ------CCCeEEEcCCCCEEEEEec
Confidence 6899999999999999976
No 41
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.46 E-value=5.7e-13 Score=123.43 Aligned_cols=180 Identities=10% Similarity=0.009 Sum_probs=107.9
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
-++.|++..+....+ .-.+.+.+++|||||++|+++. ++.+.+|+..+.. ........+
T Consensus 159 i~iwd~~~~~~~~~~---~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~--~~~~~~~~~-------------- 217 (365)
T 4h5i_A 159 MRIIDPSDLTEKFEI---ETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGS--CIARKTDFD-------------- 217 (365)
T ss_dssp EEEEETTTTEEEEEE---ECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCC--EEEEECCCC--------------
T ss_pred EEEeECCCCcEEEEe---CCCCceEEEEEccCCceEEecc--ceeEEEEEeccCc--ceeeeecCC--------------
Confidence 355566655544433 2344578999999999998775 4678888875522 111111111
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
.....+.++|+|||+++++++..... +..+..++...... ..... ...
T Consensus 218 ----------------~~~~v~~v~fspdg~~l~~~s~d~~~------------~~~i~~~~~~~~~~-~~~~~---~~~ 265 (365)
T 4h5i_A 218 ----------------KNWSLSKINFIADDTVLIAASLKKGK------------GIVLTKISIKSGNT-SVLRS---KQV 265 (365)
T ss_dssp ----------------TTEEEEEEEEEETTEEEEEEEESSSC------------CEEEEEEEEETTEE-EEEEE---EEE
T ss_pred ----------------CCCCEEEEEEcCCCCEEEEEecCCcc------------eeEEeeccccccee-cceee---eee
Confidence 01356789999999999987652110 00111122211000 00000 000
Q ss_pred CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
.+ .......++|||||++|+++. .+++|.+||+.+ .+.+.++..|..
T Consensus 266 ~~----~~~~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~---~~~~~~~~~gH~------------------------- 312 (365)
T 4h5i_A 266 TN----RFKGITSMDVDMKGELAVLAS-NDNSIALVKLKD---LSMSKIFKQAHS------------------------- 312 (365)
T ss_dssp ES----SCSCEEEEEECTTSCEEEEEE-TTSCEEEEETTT---TEEEEEETTSSS-------------------------
T ss_pred cC----CCCCeEeEEECCCCCceEEEc-CCCEEEEEECCC---CcEEEEecCccc-------------------------
Confidence 00 123567899999999999888 689999999854 455555543431
Q ss_pred cccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
+....++|||||++|+.++. +...|+
T Consensus 313 -----~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 313 -----FAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp -----SCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred -----CCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 25789999999999999865 666665
No 42
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.44 E-value=2e-12 Score=115.85 Aligned_cols=185 Identities=13% Similarity=0.137 Sum_probs=121.6
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
.-.++|+.++++.... +++..+.+..++++|.+||++++.++.+.+||..+ .++++++..+
T Consensus 66 ~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t---~~~~~ti~~~------------- 126 (262)
T 3nol_A 66 SIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN---LRQVRSFNYD------------- 126 (262)
T ss_dssp EEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT---CCEEEEEECS-------------
T ss_pred eEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc---CcEEEEEECC-------------
Confidence 5678899999998877 67777766667778999999999999999999754 5666665443
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
+.+..+++||++||++++ .+ .+..+|..+ .+.+.+++...
T Consensus 127 ---------------------~eG~glt~dg~~L~~SdG-s~---------------~i~~iDp~T---~~v~~~I~V~~ 166 (262)
T 3nol_A 127 ---------------------GEGWGLTHNDQYLIMSDG-TP---------------VLRFLDPES---LTPVRTITVTA 166 (262)
T ss_dssp ---------------------SCCCCEEECSSCEEECCS-SS---------------EEEEECTTT---CSEEEEEECEE
T ss_pred ---------------------CCceEEecCCCEEEEECC-CC---------------eEEEEcCCC---CeEEEEEEecc
Confidence 123556689999999875 22 222222221 22222222210
Q ss_pred cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412 171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII 250 (290)
Q Consensus 171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~ 250 (290)
.+ .+ -..+.++.+. || .||+++|..+.|.++|. .+.+.++.|.+.+..+....
T Consensus 167 -~g--~~-~~~lNELe~~-~G-~lyan~w~~~~I~vIDp---~tG~V~~~Id~~~L~~~~~~------------------ 219 (262)
T 3nol_A 167 -HG--EE-LPELNELEWV-DG-EIFANVWQTNKIVRIDP---ETGKVTGIIDLNGILAEAGP------------------ 219 (262)
T ss_dssp -TT--EE-CCCEEEEEEE-TT-EEEEEETTSSEEEEECT---TTCBEEEEEECTTGGGGSCS------------------
T ss_pred -CC--cc-ccccceeEEE-CC-EEEEEEccCCeEEEEEC---CCCcEEEEEECCcCcccccc------------------
Confidence 00 00 0233456655 77 69999999999998865 45788899988763211000
Q ss_pred ecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412 251 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI 285 (290)
Q Consensus 251 ~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~ 285 (290)
....++-|+++|++|++++|||++. .|.+.|
T Consensus 220 -~~~~~~vlNGIA~dp~~~~lfVTGK---~Wp~~~ 250 (262)
T 3nol_A 220 -LPSPIDVLNGIAWDKEHHRLFVTGK---LWPKVF 250 (262)
T ss_dssp -CCSSCCCEEEEEEETTTTEEEEEET---TCSEEE
T ss_pred -ccCcCCceEEEEEcCCCCEEEEECC---CCCceE
Confidence 0011236899999999999999974 777765
No 43
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.41 E-value=1.4e-11 Score=111.97 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++++|||++|++++. +|.|++||+.+ .+.+..+... ....
T Consensus 165 ~~v~~~~~spdg~~lasg~~-dg~i~iwd~~~---~~~~~~~~~h-------------------------------~~~v 209 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAI-DGIINIFDIAT---GKLLHTLEGH-------------------------------AMPI 209 (321)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSCEEEEETTT---TEEEEEECCC-------------------------------SSCC
T ss_pred ceEEEEEECCCCCEEEEEcC-CCeEEEEECCC---CcEEEEEccc-------------------------------CCce
Confidence 35788999999999998875 78999999865 3333322111 1356
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
+.++|+|||++|++++. ++ .+.+++... ...+.. ..+ ....+..++|+|||+
T Consensus 210 ~~l~~spd~~~l~s~s~---------------dg-~i~iwd~~~---~~~~~~-----~~~----h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASD---------------DG-YIKIYDVQH---ANLAGT-----LSG----HASWVLNVAFCPDDT 261 (321)
T ss_dssp CEEEECTTSCEEEEECT---------------TS-CEEEEETTT---CCEEEE-----ECC----CSSCEEEEEECTTSS
T ss_pred eEEEEcCCCCEEEEEcC---------------CC-eEEEEECCC---cceeEE-----EcC----CCCceEEEEECCCCC
Confidence 78999999999988765 22 333344321 111111 001 124577899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .+++|.+||+.. .+.+.++. +. .+....++|+|||++|+
T Consensus 262 ~l~s~s-~D~~v~iwd~~~---~~~~~~~~-~h------------------------------~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 262 HFVSSS-SDKSVKVWDVGT---RTCVHTFF-DH------------------------------QDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp EEEEEE-TTSCEEEEETTT---TEEEEEEC-CC------------------------------SSCEEEEEECTTSSEEE
T ss_pred EEEEEe-CCCcEEEEeCCC---CEEEEEEc-CC------------------------------CCcEEEEEECCCCCEEE
Confidence 999888 689999999853 34444331 11 12578899999999999
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
++.. ...-||
T Consensus 307 s~~~d~~i~vwd 318 (321)
T 3ow8_A 307 SVGDDQEIHIYD 318 (321)
T ss_dssp EEETTCCEEEEE
T ss_pred EEeCCCeEEEEe
Confidence 8865 455565
No 44
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.40 E-value=6.4e-12 Score=111.56 Aligned_cols=186 Identities=15% Similarity=0.214 Sum_probs=122.1
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
.-.++|+.++++.... +++..+.+..++++|.+||+.++.++.+.+||..+ .++++++..+
T Consensus 44 ~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t---l~~~~ti~~~------------- 104 (243)
T 3mbr_X 44 SVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT---LTPRARFRYP------------- 104 (243)
T ss_dssp EEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT---TEEEEEEECS-------------
T ss_pred eEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc---CcEEEEEeCC-------------
Confidence 5678999999998877 78887877777778999999999999999999754 6777766543
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
. .+..+++||++||+++. .+. +..+|..+ .+.+++++...
T Consensus 105 -------------------~--~Gwglt~dg~~L~vSdg-s~~---------------l~~iDp~t---~~~~~~I~V~~ 144 (243)
T 3mbr_X 105 -------------------G--EGWALTSDDSHLYMSDG-TAV---------------IRKLDPDT---LQQVGSIKVTA 144 (243)
T ss_dssp -------------------S--CCCEEEECSSCEEEECS-SSE---------------EEEECTTT---CCEEEEEECEE
T ss_pred -------------------C--CceEEeeCCCEEEEECC-CCe---------------EEEEeCCC---CeEEEEEEEcc
Confidence 1 22455689999999885 222 22222222 12222222110
Q ss_pred cCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCccee
Q psy11412 171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII 250 (290)
Q Consensus 171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~ 250 (290)
.+ .+. ....++... || .||+.+|.++.|.++|. .+.+.++.+.+++..+....+
T Consensus 145 -~g--~~~-~~lNeLe~~-~G-~lyanvw~s~~I~vIDp---~tG~V~~~idl~~l~~~~~~~----------------- 198 (243)
T 3mbr_X 145 -GG--RPL-DNLNELEWV-NG-ELLANVWLTSRIARIDP---ASGKVVAWIDLQALVPDADAL----------------- 198 (243)
T ss_dssp -TT--EEC-CCEEEEEEE-TT-EEEEEETTTTEEEEECT---TTCBEEEEEECGGGSTTTTSC-----------------
T ss_pred -CC--ccc-ccceeeEEe-CC-EEEEEECCCCeEEEEEC---CCCCEEEEEECCcCccccccc-----------------
Confidence 00 000 123344433 56 59999999999998865 457889999987632111000
Q ss_pred ecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412 251 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI 285 (290)
Q Consensus 251 ~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~ 285 (290)
+...++-|++||++|++++|||++ +.|.+.|
T Consensus 199 -~~~~~~vlNGIA~d~~~~~lfVTG---K~wp~~~ 229 (243)
T 3mbr_X 199 -TDSTNDVLNGIAFDAEHDRLFVTG---KRWPMLY 229 (243)
T ss_dssp -CCTTSSCEEEEEEETTTTEEEEEE---TTCSEEE
T ss_pred -cCCcCCceEEEEEcCCCCEEEEEC---CCCCcEE
Confidence 001123689999999999999996 4777765
No 45
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.39 E-value=1.3e-11 Score=108.82 Aligned_cols=148 Identities=11% Similarity=0.161 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|+++++++++++||+++...+.|.+++... .....+ ...+ ...|+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~---~~~~------------------------------~~~p~ 82 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTI---IRQD------------------------------LGSPE 82 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEE---ECTT------------------------------CCCEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEE---EECC------------------------------CCCcc
Confidence 6899999999999999999999999999853 222111 0000 15899
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+++++|+++.||+++...+.+.++.. ++... ..+. + .....|.+|+++|++++
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~-----~g~~~-----------~~~~--~---------~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKM-----DGTQR-----------RVLF--D---------TGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE--C---------SSCSSEEEEEEETTTTE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEc-----CCCCE-----------EEEE--E---------CCCCCccEEEEeeCCCE
Confidence 99999999999999874332222111 11000 0000 0 01146789999999999
Q ss_pred EEEEeCC--CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 194 LYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 194 Lyvs~r~--~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
||+++++ .+.|.+++++ ....+.+. ..+ ...|++++++|||++|
T Consensus 136 lyv~~~~~~~~~I~~~~~d-g~~~~~~~---~~~------------------------------~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMD-GTNRRILA---QDN------------------------------LGLPNGLTFDAFSSQL 181 (267)
T ss_dssp EEEEECCSSSCEEEEEETT-SCCCEEEE---CTT------------------------------CSCEEEEEEETTTTEE
T ss_pred EEEEECCCCCcEEEEEecC-CCCcEEEE---ECC------------------------------CCCCcEEEEcCCCCEE
Confidence 9999977 5788888873 22222211 011 0269999999999999
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
|+++.
T Consensus 182 yv~d~ 186 (267)
T 1npe_A 182 CWVDA 186 (267)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99986
No 46
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.39 E-value=2.1e-12 Score=116.04 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=121.2
Q ss_pred CCceeEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCc
Q psy11412 6 DGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG 85 (290)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~ 85 (290)
.|.+..-.++|+.++++.... ++..+.+..++++|++||++++.++.+.+||..+ .++++++..+
T Consensus 71 tG~~g~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T---l~~~~ti~~~-------- 135 (268)
T 3nok_A 71 TGHQGTLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP---PQRERTTRYS-------- 135 (268)
T ss_dssp ETTTTEEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTT---TEEEEEEECS--------
T ss_pred cCCCCEEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCc---CcEEEEEeCC--------
Confidence 355555788999999988764 5555555556678999999999999999999754 6777666443
Q ss_pred eEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412 86 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS 165 (290)
Q Consensus 86 ~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 165 (290)
+.+..+++||++||+++. .+. +..+|..+ .+.+++
T Consensus 136 --------------------------~eGwGLt~Dg~~L~vSdG-s~~---------------l~~iDp~T---~~v~~~ 170 (268)
T 3nok_A 136 --------------------------GEGWGLCYWNGKLVRSDG-GTM---------------LTFHEPDG---FALVGA 170 (268)
T ss_dssp --------------------------SCCCCEEEETTEEEEECS-SSE---------------EEEECTTT---CCEEEE
T ss_pred --------------------------CceeEEecCCCEEEEECC-CCE---------------EEEEcCCC---CeEEEE
Confidence 122455689999999875 222 22222221 122222
Q ss_pred cCccccCccccCCC-CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCC
Q psy11412 166 MPLSSLGSWKYPAR-SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ 244 (290)
Q Consensus 166 ~p~~~~~~~~~~~~-~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~ 244 (290)
++... .+ .+ ....++.+. || .||+++|..+.|.++|. .+.+.++.|.+++..+...+ .
T Consensus 171 I~V~~-~g----~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp---~TG~V~~~Idl~~L~~~~~~-----------~ 229 (268)
T 3nok_A 171 VQVKL-RG----QPVELINELECA-NG-VIYANIWHSSDVLEIDP---ATGTVVGVIDASALTRAVAG-----------Q 229 (268)
T ss_dssp EECEE-TT----EECCCEEEEEEE-TT-EEEEEETTCSEEEEECT---TTCBEEEEEECHHHHHHHTT-----------T
T ss_pred EEeCC-CC----cccccccccEEe-CC-EEEEEECCCCeEEEEeC---CCCcEEEEEECCCCcccccc-----------c
Confidence 22110 00 01 234556655 78 69999999999998865 45788899988752110000 0
Q ss_pred CCcceeecccccCCcceEEEccCCCEEEEEcCCCCCCCccc
Q psy11412 245 PDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEI 285 (290)
Q Consensus 245 ~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~~~~~~~~~~ 285 (290)
....++-|++||++|++++|||++ +.|.+.|
T Consensus 230 -------~~~~~~vlNGIA~dp~~~rlfVTG---K~Wp~~~ 260 (268)
T 3nok_A 230 -------VTNPEAVLNGIAVEPGSGRIFMTG---KLWPRLF 260 (268)
T ss_dssp -------CCCTTCCEEEEEECTTTCCEEEEE---TTCSEEE
T ss_pred -------ccCcCCceEEEEEcCCCCEEEEeC---CCCCceE
Confidence 001123689999999999999986 4777765
No 47
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.39 E-value=2.3e-12 Score=115.43 Aligned_cols=159 Identities=13% Similarity=0.135 Sum_probs=91.8
Q ss_pred EEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEE
Q psy11412 36 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 115 (290)
Q Consensus 36 ~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~v 115 (290)
.+++++++++. |+++..+++|.+||+.+ .+.+..+..+. ...|+++
T Consensus 3 ~g~~~~~~~~~-~v~~~~~~~v~~~d~~~---~~~~~~~~~~~------------------------------~~~~~~~ 48 (349)
T 1jmx_B 3 TGPALKAGHEY-MIVTNYPNNLHVVDVAS---DTVYKSCVMPD------------------------------KFGPGTA 48 (349)
T ss_dssp -CCCCCTTCEE-EEEEETTTEEEEEETTT---TEEEEEEECSS------------------------------CCSSCEE
T ss_pred ccccccCCCEE-EEEeCCCCeEEEEECCC---CcEEEEEecCC------------------------------CCCCcee
Confidence 34567776654 55655689999999864 34444443320 0268899
Q ss_pred EEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEE
Q psy11412 116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLY 195 (290)
Q Consensus 116 afsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Ly 195 (290)
+|+|||+++|+++...+ .+..++..+ .+.+..+....... ..+..+.+++|||||++||
T Consensus 49 ~~s~dg~~~~v~~~~~~---------------~i~~~d~~t---~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~ 107 (349)
T 1jmx_B 49 MMAPDNRTAYVLNNHYG---------------DIYGIDLDT---CKNTFHANLSSVPG---EVGRSMYSFAISPDGKEVY 107 (349)
T ss_dssp EECTTSSEEEEEETTTT---------------EEEEEETTT---TEEEEEEESCCSTT---EEEECSSCEEECTTSSEEE
T ss_pred EECCCCCEEEEEeCCCC---------------cEEEEeCCC---CcEEEEEEcccccc---cccccccceEECCCCCEEE
Confidence 99999999999875222 222222211 11111111000000 0012356799999999999
Q ss_pred EEeCC-----------CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412 196 TSNWM-----------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL 264 (290)
Q Consensus 196 vs~r~-----------~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~ 264 (290)
+++.. .+.|.+||+......+.+..... ...+..++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~ 155 (349)
T 1jmx_B 108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--------------------------------PRQVYLMRA 155 (349)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--------------------------------CSSCCCEEE
T ss_pred EEcccccccccccccCCCeEEEEECCCccccceeeeccC--------------------------------CCcccceeE
Confidence 99844 57999999853111111111111 015778999
Q ss_pred ccCCCEEEEEcCCCCCCC
Q psy11412 265 SLDGKRIYVSSSLFSPWD 282 (290)
Q Consensus 265 sPDG~~L~Van~~~~~~~ 282 (290)
+|||+ ||+++..+..||
T Consensus 156 s~dg~-l~~~~~~i~~~d 172 (349)
T 1jmx_B 156 ADDGS-LYVAGPDIYKMD 172 (349)
T ss_dssp CTTSC-EEEESSSEEEEC
T ss_pred CCCCc-EEEccCcEEEEe
Confidence 99999 888766444444
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.37 E-value=1.7e-11 Score=113.44 Aligned_cols=159 Identities=12% Similarity=0.099 Sum_probs=95.5
Q ss_pred CceEEEEEcCCCCEEEEEeC-CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 33 AMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~-~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.++..++|||||++|+++.. .+++|++||+.+ .+.+..+..+ ..
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---~~~~~~~~~~--------------------------------~~ 178 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---LTEKFEIETR--------------------------------GE 178 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTT---TEEEEEEECS--------------------------------SC
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---CcEEEEeCCC--------------------------------Cc
Confidence 46788999999999987653 478999999865 3344333221 35
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
+..++|||||++|+.++. + .+..++..+ .+.+.... . .........++|||||
T Consensus 179 V~~v~fspdg~~l~s~s~----------------~-~~~~~~~~~---~~~~~~~~---~----~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITG----------------S-SLEVISTVT---GSCIARKT---D----FDKNWSLSKINFIADD 231 (365)
T ss_dssp CCEEEECTTSSEEEEECS----------------S-CEEEEETTT---CCEEEEEC---C----CCTTEEEEEEEEEETT
T ss_pred eEEEEEccCCceEEeccc----------------e-eEEEEEecc---Ccceeeee---c----CCCCCCEEEEEEcCCC
Confidence 778999999999988654 1 111122111 00010000 0 0012356789999999
Q ss_pred CEEEEEeCCCC---cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412 192 RYLYTSNWMHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG 268 (290)
Q Consensus 192 r~Lyvs~r~~~---~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG 268 (290)
++|+++....+ .+..|++... ...........+. ......++|||||
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~-~~~~~~~~~~~~~-----------------------------~~~V~~~~~Spdg 281 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSG-NTSVLRSKQVTNR-----------------------------FKGITSMDVDMKG 281 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETT-EEEEEEEEEEESS-----------------------------CSCEEEEEECTTS
T ss_pred CEEEEEecCCcceeEEeecccccc-eecceeeeeecCC-----------------------------CCCeEeEEECCCC
Confidence 99998763322 5777877432 1111111111110 0146889999999
Q ss_pred CEEEEEcC--CCCCCCc
Q psy11412 269 KRIYVSSS--LFSPWDK 283 (290)
Q Consensus 269 ~~L~Van~--~~~~~~~ 283 (290)
++|++++. ...-||-
T Consensus 282 ~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKL 298 (365)
T ss_dssp CEEEEEETTSCEEEEET
T ss_pred CceEEEcCCCEEEEEEC
Confidence 99999866 5555653
No 49
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.36 E-value=4.5e-11 Score=110.15 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=110.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|+||++ |+++. .+|+|++||+.+............++ ....
T Consensus 83 ~~v~~~~~s~d~~-l~~~s-~dg~v~lWd~~~~~~~~~~~~~~~~H------------------------------~~~V 130 (344)
T 4gqb_B 83 AGVADLTWVGERG-ILVAS-DSGAVELWELDENETLIVSKFCKYEH------------------------------DDIV 130 (344)
T ss_dssp SCEEEEEEETTTE-EEEEE-TTSEEEEEEECTTSSCEEEEEEEECC------------------------------SSCE
T ss_pred CCEEEEEEeCCCe-EEEEE-CCCEEEEEeccCCCceeEeeccccCC------------------------------CCCE
Confidence 3578999999975 55555 48999999997644333332222221 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+|||++|+..+. ++ .+.++++.. .+.+..+. + ....+..++|+|||+
T Consensus 131 ~~v~~spdg~~l~sgs~---------------d~-~i~iwd~~~---~~~~~~~~-----~----h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 131 STVSVLSSGTQAVSGSK---------------DI-CIKVWDLAQ---QVVLSSYR-----A----HAAQVTCVAASPHKD 182 (344)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEECSSCT
T ss_pred EEEEECCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEEc-----C----cCCceEEEEecCCCC
Confidence 88999999999998765 22 343344322 12222110 1 124577899999997
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEe---------eEE---eeCcee----cCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLV---------GQI---FLGGKI----QSDSGVTVIDDPELDKQPDPVIIKGRRFT 256 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v---------~~i---~~Gg~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (290)
.++++.-.+++|.+||+........+ ..+ +.++.+ ..|++|++||..... +. ..+.+..
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--~~-~~~~~h~-- 257 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--CV-LSSAVHS-- 257 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CC-EEEECCS--
T ss_pred CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--EE-EEEcCCC--
Confidence 65554437899999999643221111 111 112221 467889999875421 11 1233322
Q ss_pred CCcceEEEccCCC-EEEEEcC--CCCCCCcc
Q psy11412 257 GSSQMFQLSLDGK-RIYVSSS--LFSPWDKE 284 (290)
Q Consensus 257 ~~P~~~a~sPDG~-~L~Van~--~~~~~~~~ 284 (290)
+....++|+|||+ +|+.++. .+.-||..
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred CCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 3578999999996 4665543 56667643
No 50
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.36 E-value=3.2e-11 Score=108.57 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=96.7
Q ss_pred ceEEEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 34 MVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~--~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.|++++++||| +||+++. ++++|+++|... .+++..+.++ ..
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t---g~v~~~i~l~--------------------------------~~ 65 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQT---GKVENIHKMD--------------------------------DS 65 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTT---CCEEEEEECC--------------------------------TT
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCC---CCEEEEEecC--------------------------------CC
Confidence 68999999995 8999973 478999999864 4555555543 23
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
+....+.++|++||++++..+ .+.++|..+ .+.+.+++. + .+.++.+++||
T Consensus 66 ~fgeGi~~~g~~lyv~t~~~~---------------~v~viD~~t---~~v~~~i~~----------g-~~~g~glt~Dg 116 (266)
T 2iwa_A 66 YFGEGLTLLNEKLYQVVWLKN---------------IGFIYDRRT---LSNIKNFTH----------Q-MKDGWGLATDG 116 (266)
T ss_dssp CCEEEEEEETTEEEEEETTCS---------------EEEEEETTT---TEEEEEEEC----------C-SSSCCEEEECS
T ss_pred cceEEEEEeCCEEEEEEecCC---------------EEEEEECCC---CcEEEEEEC----------C-CCCeEEEEECC
Confidence 333344456889999987332 333333322 223333222 1 12336689999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
++||+|+ ++++|+++|. ++.+.+.++++|.. ..|. ..|+.+.+. || +|
T Consensus 117 ~~l~vs~-gs~~l~viD~---~t~~v~~~I~Vg~~----------------~~p~----------~~~nele~~-dg-~l 164 (266)
T 2iwa_A 117 KILYGSD-GTSILYEIDP---HTFKLIKKHNVKYN----------------GHRV----------IRLNELEYI-NG-EV 164 (266)
T ss_dssp SSEEEEC-SSSEEEEECT---TTCCEEEEEECEET----------------TEEC----------CCEEEEEEE-TT-EE
T ss_pred CEEEEEC-CCCeEEEEEC---CCCcEEEEEEECCC----------------Cccc----------ccceeEEEE-CC-EE
Confidence 9999999 8999999865 35678888888751 0011 158889998 66 89
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
||++.
T Consensus 165 yvn~~ 169 (266)
T 2iwa_A 165 WANIW 169 (266)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 98864
No 51
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.35 E-value=3.3e-11 Score=110.12 Aligned_cols=159 Identities=9% Similarity=-0.029 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
....++|||||++|++++. +++|++||+... .......+..++ ....+
T Consensus 18 ~v~~l~~sp~g~~las~~~-D~~i~iw~~~~~-~~~~~~~~~~~h------------------------------~~~v~ 65 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG-DRRIRIWGTEGD-SWICKSVLSEGH------------------------------QRTVR 65 (345)
T ss_dssp CEEEEEECTTSSCEEEEET-TSCEEEEEEETT-EEEEEEEECSSC------------------------------SSCEE
T ss_pred cEEEEEECCCCCEEEEEcC-CCeEEEEEcCCC-cceeeeeecccc------------------------------CCcEE
Confidence 4678999999999988775 899999998652 111111111111 14678
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|||||++|+.++. ++ .+.+++..... ...+.. ..+ ....+..++|+|||++
T Consensus 66 ~~~~sp~g~~l~s~s~---------------D~-~v~iw~~~~~~-~~~~~~-----~~~----h~~~v~~v~~sp~~~~ 119 (345)
T 3fm0_A 66 KVAWSPCGNYLASASF---------------DA-TTCIWKKNQDD-FECVTT-----LEG----HENEVKSVAWAPSGNL 119 (345)
T ss_dssp EEEECTTSSEEEEEET---------------TS-CEEEEEECCC--EEEEEE-----ECC----CSSCEEEEEECTTSSE
T ss_pred EEEECCCCCEEEEEEC---------------CC-cEEEEEccCCC-eEEEEE-----ccC----CCCCceEEEEeCCCCE
Confidence 8999999999998765 22 23334332100 000111 011 1245788999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .+++|.+||+........+..+. +. .+....++|+|+|++|++
T Consensus 120 l~s~s-~D~~v~iwd~~~~~~~~~~~~~~-~h------------------------------~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 120 LATCS-RDKSVWVWEVDEEDEYECVSVLN-SH------------------------------TQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEEEE-TTSCEEEEEECTTSCEEEEEEEC-CC------------------------------CSCEEEEEECSSSSCEEE
T ss_pred EEEEE-CCCeEEEEECCCCCCeEEEEEec-Cc------------------------------CCCeEEEEECCCCCEEEE
Confidence 99888 68999999996533222222221 11 014688999999999998
Q ss_pred EcC--CCCCCC
Q psy11412 274 SSS--LFSPWD 282 (290)
Q Consensus 274 an~--~~~~~~ 282 (290)
++. ...-|+
T Consensus 168 ~s~d~~i~~w~ 178 (345)
T 3fm0_A 168 ASYDDTVKLYR 178 (345)
T ss_dssp EETTSCEEEEE
T ss_pred EeCCCcEEEEE
Confidence 865 444454
No 52
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.34 E-value=1.7e-11 Score=120.81 Aligned_cols=160 Identities=11% Similarity=0.104 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|||||++|++++. +++|++||+... ....+.. .++ ...+
T Consensus 449 ~~v~~va~spdg~~lasgs~-D~~v~lwd~~~~-~~~~~~~--~~h------------------------------~~~v 494 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQ-DSKVHVYKLSGA-SVSEVKT--IVH------------------------------PAEI 494 (611)
T ss_dssp SCEEEEEECTTSCEEEEEET-TSEEEEEEEETT-EEEEEEE--EEC------------------------------SSCE
T ss_pred CCceEEEEeCCCCEEEEeCC-CCeEEEEEccCC-ceeeeec--cCC------------------------------CCce
Confidence 35678999999999998875 889999998642 2222221 111 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpDG 191 (290)
..++|||||++|++++. ++ .+..+++.+ ...+.... . +. ....+..++|||||
T Consensus 495 ~~v~fspdg~~las~s~---------------d~-~v~~w~~~~---~~~~~~~~-----~--~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQ---------------SR-KVIPYSVAN---NFELAHTN-----S--WTFHTAKVACVSWSPDN 548 (611)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-CEEEEEGGG---TTEESCCC-----C--CCCCSSCEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEcC---------------CC-CEEEEEcCC---CCceeeee-----e--eeecccceeEEEECCCC
Confidence 88999999999998765 22 333344321 01111000 0 01 12467889999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
++|+++. .+++|.+||+..+.... +. +..|.. .+....++|+|||+ |
T Consensus 549 ~~lasgs-~D~~v~lW~~~~~~~~~-~~-~~~~h~-----------------------------~~~v~~v~fs~d~~-l 595 (611)
T 1nr0_A 549 VRLATGS-LDNSVIVWNMNKPSDHP-II-IKGAHA-----------------------------MSSVNSVIWLNETT-I 595 (611)
T ss_dssp SEEEEEE-TTSCEEEEETTCTTSCC-EE-ETTSST-----------------------------TSCEEEEEEEETTE-E
T ss_pred CEEEEEE-CCCcEEEEECCCccccc-ch-hhccCc-----------------------------ccCeeEEEEcCCCE-E
Confidence 9999888 68999999996532211 01 111110 02578899999999 7
Q ss_pred EEEcC--CCCCCCccc
Q psy11412 272 YVSSS--LFSPWDKEI 285 (290)
Q Consensus 272 ~Van~--~~~~~~~~~ 285 (290)
+.+.. .+.-|+-.|
T Consensus 596 ~s~~~D~~i~lW~~~~ 611 (611)
T 1nr0_A 596 VSAGQDSNIKFWNVPF 611 (611)
T ss_dssp EEEETTSCEEEEECCC
T ss_pred EEecCCCCEEEEeccC
Confidence 77754 666776543
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.32 E-value=1.3e-10 Score=103.00 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=104.6
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
-.+.|+...+..... ..-...+..++++|||++|++++. +|.|.+||+... +.+.....
T Consensus 165 v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~---~~~~~~~~--------------- 223 (337)
T 1gxr_A 165 IAVWDLHNQTLVRQF--QGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREG---RQLQQHDF--------------- 223 (337)
T ss_dssp EEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEEEC---------------
T ss_pred EEEEeCCCCceeeee--ecccCceEEEEECCCCCEEEEEec-CCcEEEEECCCC---ceEeeecC---------------
Confidence 345666655443332 012346889999999999998875 889999998652 33322211
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
...+..++|+|+|+++++.++ ++ .+..++... ..... .
T Consensus 224 -----------------~~~v~~~~~s~~~~~l~~~~~---------------~~-~i~~~~~~~---~~~~~------~ 261 (337)
T 1gxr_A 224 -----------------TSQIFSLGYCPTGEWLAVGME---------------SS-NVEVLHVNK---PDKYQ------L 261 (337)
T ss_dssp -----------------SSCEEEEEECTTSSEEEEEET---------------TS-CEEEEETTS---SCEEE------E
T ss_pred -----------------CCceEEEEECCCCCEEEEEcC---------------CC-cEEEEECCC---CCeEE------E
Confidence 145788999999999998765 12 232233221 11100 0
Q ss_pred CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
......+..++|+|||++|+++. .++.|.+||+... +.+......
T Consensus 262 ----~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~---~~~~~~~~~--------------------------- 306 (337)
T 1gxr_A 262 ----HLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYG---ASIFQSKES--------------------------- 306 (337)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECS---------------------------
T ss_pred ----cCCccceeEEEECCCCCEEEEec-CCCcEEEEECCCC---eEEEEecCC---------------------------
Confidence 00124577899999999999888 6899999998542 222221111
Q ss_pred cccccCCcceEEEccCCCEEEEEcC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
+.+..++|+|||++|++++.
T Consensus 307 -----~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 307 -----SSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp -----SCEEEEEECTTSCEEEEEET
T ss_pred -----CcEEEEEECCCCCEEEEecC
Confidence 25788999999999999865
No 54
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.32 E-value=7.1e-11 Score=107.91 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=101.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|+|||++|++++. +++|.+|++... ..+.+..+. ++ ....
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~-D~~v~iw~~~~~-~~~~~~~~~-~h------------------------------~~~v 108 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASF-DATTCIWKKNQD-DFECVTTLE-GH------------------------------ENEV 108 (345)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSCEEEEEECCC--EEEEEEEC-CC------------------------------SSCE
T ss_pred CcEEEEEECCCCCEEEEEEC-CCcEEEEEccCC-CeEEEEEcc-CC------------------------------CCCc
Confidence 35789999999999998875 889999998642 223332221 11 1457
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+|+|++|+.++. ++ .+.++++........+.. ..+ .......++++|||+
T Consensus 109 ~~v~~sp~~~~l~s~s~---------------D~-~v~iwd~~~~~~~~~~~~-----~~~----h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSR---------------DK-SVWVWEVDEEDEYECVSV-----LNS----HTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-CEEEEEECTTSCEEEEEE-----ECC----CCSCEEEEEECSSSS
T ss_pred eEEEEeCCCCEEEEEEC---------------CC-eEEEEECCCCCCeEEEEE-----ecC----cCCCeEEEEECCCCC
Confidence 88999999999998765 22 333344322000000110 000 123567899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .+++|.+||+... ....+..+ .|. .+....++|+|||++|+
T Consensus 164 ~l~s~s-~d~~i~~w~~~~~-~~~~~~~~-~~h------------------------------~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 164 LLASAS-YDDTVKLYREEED-DWVCCATL-EGH------------------------------ESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp CEEEEE-TTSCEEEEEEETT-EEEEEEEE-CCC------------------------------SSCEEEEEECTTSSEEE
T ss_pred EEEEEe-CCCcEEEEEecCC-CEEEEEEe-cCC------------------------------CCceEEEEECCCCCEEE
Confidence 999888 6889999998531 11112221 111 12578899999999999
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
++.. ...-|+
T Consensus 211 s~s~D~~v~iW~ 222 (345)
T 3fm0_A 211 SCSDDRTVRIWR 222 (345)
T ss_dssp EEETTSCEEEEE
T ss_pred EEeCCCeEEEec
Confidence 9865 556665
No 55
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.31 E-value=1.1e-10 Score=105.90 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++++|++.+++++.. +++|++||+.+ .+.+..+..+ .....
T Consensus 82 ~v~~~~~~~~~~~l~s~s~-D~~i~lWd~~~---~~~~~~~~~~-------------------------------~~~~~ 126 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSL-DAHIRLWDLEN---GKQIKSIDAG-------------------------------PVDAW 126 (321)
T ss_dssp CEEEEEECSSSSEEEEEET-TSEEEEEETTT---TEEEEEEECC-------------------------------TTCCC
T ss_pred CEEEEEECCCCCEEEEEeC-CCcEEEEECCC---CCEEEEEeCC-------------------------------CccEE
Confidence 5788999999999988775 89999999965 3333333222 02456
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|||++|++.+. ++ .+.+++... ......+. ........++|||||++
T Consensus 127 ~~~~spdg~~l~~g~~---------------dg-~v~i~~~~~---~~~~~~~~---------~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTH---------------VG-KVNIFGVES---GKKEYSLD---------TRGKFILSIAYSPDGKY 178 (321)
T ss_dssp CEEECTTSSEEEEECT---------------TS-EEEEEETTT---CSEEEEEE---------CSSSCEEEEEECTTSSE
T ss_pred EEEECCCCCEEEEEcC---------------CC-cEEEEEcCC---CceeEEec---------CCCceEEEEEECCCCCE
Confidence 6999999999998654 12 232233211 11111000 01235678999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .++.|.+||+.. .+.+..+. +. ....+.++|+|||++|++
T Consensus 179 lasg~-~dg~i~iwd~~~---~~~~~~~~-~h------------------------------~~~v~~l~~spd~~~l~s 223 (321)
T 3ow8_A 179 LASGA-IDGIINIFDIAT---GKLLHTLE-GH------------------------------AMPIRSLTFSPDSQLLVT 223 (321)
T ss_dssp EEEEE-TTSCEEEEETTT---TEEEEEEC-CC------------------------------SSCCCEEEECTTSCEEEE
T ss_pred EEEEc-CCCeEEEEECCC---CcEEEEEc-cc------------------------------CCceeEEEEcCCCCEEEE
Confidence 99888 689999999853 34444332 11 014688999999999999
Q ss_pred EcC--CCCCCCc
Q psy11412 274 SSS--LFSPWDK 283 (290)
Q Consensus 274 an~--~~~~~~~ 283 (290)
++. .+.-||-
T Consensus 224 ~s~dg~i~iwd~ 235 (321)
T 3ow8_A 224 ASDDGYIKIYDV 235 (321)
T ss_dssp ECTTSCEEEEET
T ss_pred EcCCCeEEEEEC
Confidence 875 4555653
No 56
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.31 E-value=1e-10 Score=104.76 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+.+++|+|||++|+++.. +|+|++||+.. ...+..+... ....+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~-dg~v~lWd~~~---~~~~~~~~~~-------------------------------~~~v~ 59 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY-SGRVELWNYET---QVEVRSIQVT-------------------------------ETPVR 59 (304)
T ss_dssp CEEEEEECSSSSEEEEEET-TSEEEEEETTT---TEEEEEEECC-------------------------------SSCEE
T ss_pred ceEEEEECCCCCEEEEEcC-CCcEEEEECCC---CceeEEeecc-------------------------------CCcEE
Confidence 5789999999999998875 89999999865 2333332221 13567
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|+|++|++++. + +.+.+++... .+.+..+ .+ .......|+|+|||++
T Consensus 60 ~~~~~~~~~~l~s~s~---------------d-~~i~vwd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSD---------------D-FRIRVFNYNT---GEKVVDF-----EA----HPDYIRSIAVHPTKPY 111 (304)
T ss_dssp EEEEEGGGTEEEEEET---------------T-SEEEEEETTT---CCEEEEE-----EC----CSSCEEEEEECSSSSE
T ss_pred EEEEeCCCCEEEEECC---------------C-CEEEEEECCC---CcEEEEE-----eC----CCCcEEEEEEcCCCCE
Confidence 8999999999998765 2 2333344322 1111110 01 1245778999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc-CCCEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRIY 272 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP-DG~~L~ 272 (290)
|+++. .+++|.+||+... ......+ .+.. +....++|+| |+++|+
T Consensus 112 l~sgs-~D~~v~lWd~~~~--~~~~~~~-~~h~------------------------------~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 112 VLSGS-DDLTVKLWNWENN--WALEQTF-EGHE------------------------------HFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEEEE-TTSCEEEEEGGGT--TEEEEEE-CCCC------------------------------SCEEEEEECTTCTTEEE
T ss_pred EEEEC-CCCeEEEEECCCC--cchhhhh-cccC------------------------------CcEEEEEECCCCCCEEE
Confidence 99888 6899999999642 1222211 1220 1467889998 677887
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
+++. ...-||
T Consensus 158 sgs~D~~v~iwd 169 (304)
T 2ynn_A 158 SGCLDRTVKVWS 169 (304)
T ss_dssp EEETTSEEEEEE
T ss_pred EEeCCCeEEEEE
Confidence 7754 444554
No 57
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.30 E-value=1.9e-10 Score=101.30 Aligned_cols=119 Identities=6% Similarity=-0.043 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|++++++|++++||+++...+.|.+++.+. ...+.+. ..+ ...|
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~--~~~-------------------------------~~~P 124 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRRVLF--DTG-------------------------------LVNP 124 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE--CSS-------------------------------CSSE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEEEEE--ECC-------------------------------CCCc
Confidence 48999999999999999999999999999853 2222110 000 1579
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++++++|++++||+++.... ...+..++. +....+.+.. .....|.+|+++|||+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~-------------~~~I~~~~~-dg~~~~~~~~-----------~~~~~P~gia~d~~~~ 179 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRD-------------NPKIETSHM-DGTNRRILAQ-----------DNLGLPNGLTFDAFSS 179 (267)
T ss_dssp EEEEEETTTTEEEEEECCSS-------------SCEEEEEET-TSCCCEEEEC-----------TTCSCEEEEEEETTTT
T ss_pred cEEEEeeCCCEEEEEECCCC-------------CcEEEEEec-CCCCcEEEEE-----------CCCCCCcEEEEcCCCC
Confidence 99999999999999986310 111111111 0000000100 0114688999999999
Q ss_pred EEEEEeCCCCcEEEEEec
Q psy11412 193 YLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~ 210 (290)
+||+++++.+.|.++|..
T Consensus 180 ~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 180 QLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCEEEEEecC
Confidence 999999999999999874
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.29 E-value=6.6e-10 Score=98.44 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=98.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...+..++++|||++|++++. +|.|.+||+... .......+... ...
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~~~~~~~~~-------------------------------~~~ 143 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGE-ASTLSIWDLAAP-TPRIKAELTSS-------------------------------APA 143 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEES-SSEEEEEECCCC---EEEEEEECS-------------------------------SSC
T ss_pred CCcEEEEEEcCCCCEEEEEcC-CCcEEEEECCCC-CcceeeecccC-------------------------------CCc
Confidence 346889999999999998875 789999999763 22222221111 135
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
...++|+|+++++++.++ ++ .+..++... .+.+..+. . .......++++|||
T Consensus 144 i~~~~~~~~~~~l~~~~~---------------dg-~v~~~d~~~---~~~~~~~~-----~----~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCS---------------DG-NIAVWDLHN---QTLVRQFQ-----G----HTDGASCIDISNDG 195 (337)
T ss_dssp EEEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEECTTS
T ss_pred eEEEEECCCCCEEEEEeC---------------CC-cEEEEeCCC---Cceeeeee-----c----ccCceEEEEECCCC
Confidence 678999999999998765 12 233333321 11111110 0 12356789999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
++|+++. .++.|.+||+.. .+.+..+...+ .+..++|+|||++|
T Consensus 196 ~~l~~~~-~dg~i~~~d~~~---~~~~~~~~~~~--------------------------------~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 196 TKLWTGG-LDNTVRSWDLRE---GRQLQQHDFTS--------------------------------QIFSLGYCPTGEWL 239 (337)
T ss_dssp SEEEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CEEEEEECTTSSEE
T ss_pred CEEEEEe-cCCcEEEEECCC---CceEeeecCCC--------------------------------ceEEEEECCCCCEE
Confidence 9999988 688999999854 34444333222 57889999999999
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
++++.
T Consensus 240 ~~~~~ 244 (337)
T 1gxr_A 240 AVGME 244 (337)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 99864
No 59
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.28 E-value=1e-10 Score=112.68 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++|+||+++|+++.. +++|.+||... +.+..+. ++ ...+
T Consensus 427 ~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~~~----~~~~~~~-~~------------------------------~~~v 470 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASASD-DKTVKLWNRNG----QLLQTLT-GH------------------------------SSSV 470 (577)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSEEEEEETTS----CEEEEEE-CC------------------------------SSCE
T ss_pred CCeEEEEECCCCCEEEEEcC-CCEEEEEECCC----CEEEEEc-CC------------------------------CCCE
Confidence 35778999999999988775 88999999742 2222221 11 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+|||++|++++. + +.+.+++.. .+.+..+. + ....+..|+|||||+
T Consensus 471 ~~~~~spd~~~las~~~---------------d-~~i~iw~~~----~~~~~~~~-----~----h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASD---------------D-KTVKLWNRN----GQLLQTLT-----G----HSSSVRGVAFSPDGQ 521 (577)
T ss_dssp EEEEECTTSCEEEEEET---------------T-SEEEEEETT----SCEEEEEE-----C----CSSCEEEEEECTTSS
T ss_pred EEEEEcCCCCEEEEEeC---------------C-CEEEEEcCC----CCEEEEEe-----C----CCCCEEEEEEcCCCC
Confidence 88999999999998765 1 233333321 11111100 1 124577899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .++.|.+||.. .+.+..+. |. .+....++|+|||++|+
T Consensus 522 ~l~s~~-~dg~v~lwd~~----~~~~~~~~-~h------------------------------~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 522 TIASAS-DDKTVKLWNRN----GQLLQTLT-GH------------------------------SSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp CEEEEE-TTSEEEEECTT----SCEEEEEE-CC------------------------------SSCEEEEEECTTSSCEE
T ss_pred EEEEEE-CcCEEEEEeCC----CCEEEEEc-CC------------------------------CCCEEEEEEcCCCCEEE
Confidence 999888 68899999963 23343332 22 12578899999999999
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
++.. .+..||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 8864 444453
No 60
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.28 E-value=1.9e-10 Score=104.64 Aligned_cols=148 Identities=13% Similarity=0.149 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
+.+..++++|||++|++++. +++|++||+... ..+..+. ++ ...+
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~-d~~v~~wd~~~~---~~~~~~~-~h------------------------------~~~v 229 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGAC-DASAKLWDVREG---MCRQTFT-GH------------------------------ESDI 229 (340)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSCEEEEETTTC---SEEEEEC-CC------------------------------SSCE
T ss_pred CceEEEEECCCCCEEEEEeC-CCcEEEEECCCC---eeEEEEc-CC------------------------------cCCE
Confidence 35789999999999987775 899999999653 2222211 10 1457
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+|+|++|++++. ++ .+.+++... .+.+..... .. .......++|||||+
T Consensus 230 ~~v~~~p~~~~l~s~s~---------------d~-~v~iwd~~~---~~~~~~~~~---~~----~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 230 NAICFFPNGNAFATGSD---------------DA-TCRLFDLRA---DQELMTYSH---DN----IICGITSVSFSKSGR 283 (340)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEECC---TT----CCSCEEEEEECTTSS
T ss_pred EEEEEcCCCCEEEEEcC---------------CC-cEEEEECCC---CcEEEEEcc---CC----cccceEEEEECCCCC
Confidence 88999999999998765 22 333344321 111111000 00 012467899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .++.|.+||+.. ...+..+. |. .+....++|+|||++|+
T Consensus 284 ~l~~g~-~d~~i~vwd~~~---~~~~~~~~-~h------------------------------~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 284 LLLAGY-DDFNCNVWDALK---ADRAGVLA-GH------------------------------DNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EEEEEE-TTSEEEEEETTT---CCEEEEEE-CC------------------------------SSCEEEEEECTTSSCEE
T ss_pred EEEEEC-CCCeEEEEEccc---CcEeeEee-cC------------------------------CCcEEEEEEcCCCCEEE
Confidence 999988 789999999854 23333321 22 02468899999999999
Q ss_pred EEcC
Q psy11412 273 VSSS 276 (290)
Q Consensus 273 Van~ 276 (290)
.++.
T Consensus 329 s~s~ 332 (340)
T 1got_B 329 TGSW 332 (340)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8864
No 61
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.28 E-value=2.6e-10 Score=112.42 Aligned_cols=184 Identities=10% Similarity=0.124 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLDDRY-LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpDGr~-Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.+..++|+||+++ |+++. .+++|++||... .+.+..+ .++ ...+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s-~D~~v~lwd~~~---~~~~~~l-~~H------------------------------~~~V 193 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGS-DDNTVAIFEGPP---FKFKSTF-GEH------------------------------TKFV 193 (611)
T ss_dssp CEEEEEECSSSSCEEEEEE-TTSCEEEEETTT---BEEEEEE-CCC------------------------------SSCE
T ss_pred CceEEEECCCCCeEEEEEe-CCCeEEEEECCC---CeEeeee-ccc------------------------------cCce
Confidence 6789999999985 55554 589999999753 2333322 111 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|||||++|+.++. ++ .+.+++..+ .+.+..+....... ......+..++|||||+
T Consensus 194 ~~v~fspdg~~las~s~---------------D~-~i~lwd~~~---g~~~~~~~~~~~~~--~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGG---------------DG-TIVLYNGVD---GTKTGVFEDDSLKN--VAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---CCEEEECBCTTSSS--CSSSSCEEEEEECTTSS
T ss_pred EEEEECCCCCEEEEEEC---------------CC-cEEEEECCC---CcEeeeeccccccc--cccCCCEEEEEECCCCC
Confidence 88999999999988765 22 333343321 11111110000000 01224678899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc--------------e---ecCCCceEEecCCCCCCCCCcceeecccc
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG--------------K---IQSDSGVTVIDDPELDKQPDPVIIKGRRF 255 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg--------------~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (290)
+|+++. .+++|.+||+.. .+.+.++..+. . ...++++.+++..... + ...+.|..
T Consensus 253 ~l~s~s-~D~~v~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~--~-~~~~~gh~- 324 (611)
T 1nr0_A 253 KIASAS-ADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS--I-DQVRYGHN- 324 (611)
T ss_dssp EEEEEE-TTSEEEEEETTT---TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE--E-EEEECCCS-
T ss_pred EEEEEe-CCCeEEEEeCCC---CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC--c-ceEEcCCC-
Confidence 999888 689999999854 34444443221 1 1457778888754311 0 01112221
Q ss_pred cCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 256 TGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 256 ~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
+....++|+|||++|++++. ...-||
T Consensus 325 -~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 325 -KAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -CCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 34789999999999999965 555565
No 62
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.5e-10 Score=109.21 Aligned_cols=159 Identities=13% Similarity=0.175 Sum_probs=99.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIR--DTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~--d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
..+.+++|+|||++|++++..+|+|.+||+. ... .+..+.... ...
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~-----------------------------~~~ 150 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN---VLKLRKRFC-----------------------------FSK 150 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS---CEEEEEEEE-----------------------------CSS
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc---eeeeeeccc-----------------------------CCC
Confidence 3688999999999986666568999999997 422 222221100 014
Q ss_pred CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
.+..++|+|+|++|++++. ++ .+..+++.+. ..... +.....+ ....+..++|+||
T Consensus 151 ~v~~~~~sp~~~~l~~~~~---------------~g-~v~~~~~~~~---~~~~~-~~~~~~~----h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADK---------------FG-DVYSIDINSI---PEEKF-TQEPILG----HVSMLTDVHLIKD 206 (450)
T ss_dssp CEEEEEECTTSSEEEEEET---------------TS-EEEEEETTSC---CCSSC-CCCCSEE----CSSCEEEEEEEEC
T ss_pred CceEEEEcCCCCEEEEEeC---------------CC-cEEEEecCCc---ccccc-cceeeec----ccCceEEEEEcCC
Confidence 6789999999999998865 12 2222322210 00000 0000000 1245778999999
Q ss_pred ---CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412 191 ---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 267 (290)
Q Consensus 191 ---Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD 267 (290)
|++|+++. .+++|.+||+... ..+..+..+. .+.+..++|+ |
T Consensus 207 ~~~~~~l~s~~-~d~~i~vwd~~~~---~~~~~~~~~h------------------------------~~~v~~~~~s-d 251 (450)
T 2vdu_B 207 SDGHQFIITSD-RDEHIKISHYPQC---FIVDKWLFGH------------------------------KHFVSSICCG-K 251 (450)
T ss_dssp TTSCEEEEEEE-TTSCEEEEEESCT---TCEEEECCCC------------------------------SSCEEEEEEC-S
T ss_pred CCCCcEEEEEc-CCCcEEEEECCCC---ceeeeeecCC------------------------------CCceEEEEEC-C
Confidence 99999888 5789999999542 2233222222 1257899999 9
Q ss_pred CCEEEEEcC--CCCCCC
Q psy11412 268 GKRIYVSSS--LFSPWD 282 (290)
Q Consensus 268 G~~L~Van~--~~~~~~ 282 (290)
|++|++++. .+.-||
T Consensus 252 ~~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWD 268 (450)
T ss_dssp TTEEEEEESSSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 999999875 444554
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.26 E-value=6.5e-10 Score=101.73 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=109.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++++||+++|++++. ++.|.+||++. +.+..+... ....
T Consensus 164 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~----~~~~~~~~h-------------------------------~~~v 207 (383)
T 3ei3_B 164 YWYCCVDVSVSRQMLATGDS-TGRLLLLGLDG----HEIFKEKLH-------------------------------KAKV 207 (383)
T ss_dssp CCEEEEEEETTTTEEEEEET-TSEEEEEETTS----CEEEEEECS-------------------------------SSCE
T ss_pred CCeEEEEECCCCCEEEEECC-CCCEEEEECCC----CEEEEeccC-------------------------------CCcE
Confidence 45889999999999998875 79999999832 222222111 1467
Q ss_pred eEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc-cccccCccccCccccCCCCceeEEEEcc-
Q psy11412 113 QMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN-EMRSMPLSSLGSWKYPARSMVTDILISL- 189 (290)
Q Consensus 113 r~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~~~~~~~i~~Sp- 189 (290)
..++|+|+++ .|++++. ++.+.+++........ .+.. +........++|+|
T Consensus 208 ~~~~~~~~~~~~l~s~~~----------------d~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~ 261 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSV----------------DATVKLWDLRNIKDKNSYIAE----------MPHEKPVNAAYFNPT 261 (383)
T ss_dssp EEEEECSSCTTEEEEEET----------------TSEEEEEEGGGCCSTTCEEEE----------EECSSCEEEEEECTT
T ss_pred EEEEECCCCCCEEEEEeC----------------CCEEEEEeCCCCCcccceEEE----------ecCCCceEEEEEcCC
Confidence 8899999999 6776554 1233334432210000 1110 11224577899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe----------------eCce----e--------cCCCceEEecCCCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF----------------LGGK----I--------QSDSGVTVIDDPEL 241 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~----------------~Gg~----~--------~~~~~v~~~~~~~~ 241 (290)
||++|+++. .++.|.+||+.+......+..-. .+.. + ..+++|.+|+....
T Consensus 262 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 262 DSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG 340 (383)
T ss_dssp TSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred CCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence 999999888 68999999996432222211000 0000 0 25788999997542
Q ss_pred CCCCCcceeecccccCCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412 242 DKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-LFSPWD 282 (290)
Q Consensus 242 ~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~-~~~~~~ 282 (290)
.. ...+.+....+....++|+|||++|++++. .+.-|+
T Consensus 341 ~~---~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~ 379 (383)
T 3ei3_B 341 GL---VHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWN 379 (383)
T ss_dssp CE---EEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEE
T ss_pred ce---eeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEe
Confidence 10 112222222233566799999999998854 333443
No 64
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.26 E-value=1.9e-10 Score=99.47 Aligned_cols=171 Identities=18% Similarity=0.115 Sum_probs=100.7
Q ss_pred eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 89 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~ 89 (290)
..-.+.|+..++..... .....+..+++||||++|+++. ++.|.+||+...+....+. .+.
T Consensus 22 ~~i~~~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~---~~~----------- 82 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVW---QTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVD---TGF----------- 82 (297)
T ss_dssp EEEEEEETTTTEEEEEE---EESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECC---CTT-----------
T ss_pred eeEEEEeCCCCceeeec---cCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEec---ccc-----------
Confidence 44566777776655433 2355788999999999998875 5799999996512222211 110
Q ss_pred cCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc
Q psy11412 90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS 169 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~ 169 (290)
....+..++|||||++|+++..... ....+..++... .....
T Consensus 83 ------------------~~~~~~~~~~spdg~~l~~~~~~~~------------~~~~l~~~~~~~----~~~~~---- 124 (297)
T 2ojh_A 83 ------------------ATICNNDHGISPDGALYAISDKVEF------------GKSAIYLLPSTG----GTPRL---- 124 (297)
T ss_dssp ------------------CCCBCSCCEECTTSSEEEEEECTTT------------SSCEEEEEETTC----CCCEE----
T ss_pred ------------------ccccccceEECCCCCEEEEEEeCCC------------CcceEEEEECCC----CceEE----
Confidence 0134667999999999998763110 001111111100 00110
Q ss_pred ccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412 170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI 249 (290)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~ 249 (290)
+........+++||||++|+++...++.+.+|++..... .. ..+.. .
T Consensus 125 ------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~-~~~~~-~------------------------ 171 (297)
T 2ojh_A 125 ------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VE-TRLTH-G------------------------ 171 (297)
T ss_dssp ------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CE-EECCC-S------------------------
T ss_pred ------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cc-eEccc-C------------------------
Confidence 111223667899999999885554678889998742211 11 11111 1
Q ss_pred eecccccCCcceEEEccCCCEEEEEcC
Q psy11412 250 IKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 250 ~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
...+..+.|+|||++|+++..
T Consensus 172 ------~~~~~~~~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 172 ------EGRNDGPDYSPDGRWIYFNSS 192 (297)
T ss_dssp ------SSCEEEEEECTTSSEEEEEEC
T ss_pred ------CCccccceECCCCCEEEEEec
Confidence 125788999999999887753
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.25 E-value=6.5e-10 Score=102.49 Aligned_cols=197 Identities=16% Similarity=0.174 Sum_probs=118.2
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++.++...+..... .........+++|||++|++++. +|.|.+||+.. .+....+ .++
T Consensus 81 ~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~-~~h-------------- 138 (420)
T 3vl1_A 81 FLFNTIIRDGSKML---KRADYTAVDTAKLQMRRFILGTT-EGDIKVLDSNF---NLQREID-QAH-------------- 138 (420)
T ss_dssp EEEECCSEETTTTS---CSCCEEEEEEECSSSCEEEEEET-TSCEEEECTTS---CEEEEET-TSS--------------
T ss_pred EEEEecccceeeEE---ecCCceEEEEEecCCCEEEEEEC-CCCEEEEeCCC---cceeeec-ccc--------------
Confidence 45566655544433 22334556679999999988875 78999999864 2222111 110
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
......++|+|+|++|++++. ++ .+.++++.. .+.+..+ .
T Consensus 139 ----------------~~~v~~~~~~~~~~~l~s~s~---------------d~-~i~iwd~~~---~~~~~~~-----~ 178 (420)
T 3vl1_A 139 ----------------VSEITKLKFFPSGEALISSSQ---------------DM-QLKIWSVKD---GSNPRTL-----I 178 (420)
T ss_dssp ----------------SSCEEEEEECTTSSEEEEEET---------------TS-EEEEEETTT---CCCCEEE-----E
T ss_pred ----------------cCccEEEEECCCCCEEEEEeC---------------CC-eEEEEeCCC---CcCceEE-----c
Confidence 146788999999999998765 22 344444322 1111110 0
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee-----------------------------
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL----------------------------- 223 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~----------------------------- 223 (290)
+ .......++|+|||++|+++. .++.|.+||+.. .+.+..+..
T Consensus 179 ~----h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 179 G----HRATVTDIAIIDRGRNVLSAS-LDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp C----CSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred C----CCCcEEEEEEcCCCCEEEEEc-CCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 0 124577899999999999888 688999999854 222222211
Q ss_pred --------Ccee---cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC-EEEEEcC--CCCCCCc
Q psy11412 224 --------GGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK-RIYVSSS--LFSPWDK 283 (290)
Q Consensus 224 --------Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~-~L~Van~--~~~~~~~ 283 (290)
|..+ ..++.|.+||...... . ..+.. ...+....++|+|+|+ +|++++. .+.-||-
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ--T-IQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCE--E-EEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCce--e-EEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 1011 4677899998654210 0 00100 1123578999999999 8888765 4455553
No 66
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.24 E-value=4.3e-10 Score=100.17 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|+++.. +|.|++|++.+. +....+. ++ .....
T Consensus 25 ~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~---~~~~~~~-~h------------------------------~~~v~ 69 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYDG---KFEKTIS-GH------------------------------KLGIS 69 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-TSCEEEEETTTC---CEEEEEC-CC------------------------------SSCEE
T ss_pred cEEEEEECCCCCEEEEeeC-CCeEEEEeCCCc---ccchhhc-cC------------------------------CCceE
Confidence 5789999999999988875 889999998653 2222211 11 14678
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|+|++|++++. + +.+.+++... .+.+..+. + .......++|+|||++
T Consensus 70 ~~~~~~~~~~l~s~~~---------------d-~~i~vwd~~~---~~~~~~~~-----~----~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 70 DVAWSSDSNLLVSASD---------------D-KTLKIWDVSS---GKCLKTLK-----G----HSNYVFCCNFNPQSNL 121 (312)
T ss_dssp EEEECTTSSEEEEEET---------------T-SEEEEEETTT---CCEEEEEE-----C----CSSCEEEEEECSSSSE
T ss_pred EEEEcCCCCEEEEECC---------------C-CEEEEEECCC---CcEEEEEc-----C----CCCCEEEEEEcCCCCE
Confidence 8999999999998765 2 2333344322 11111100 0 1235677999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .++.|.+||+.. .+.+..+.... +....++|+|+|++|++
T Consensus 122 l~s~~-~d~~i~iwd~~~---~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 122 IVSGS-FDESVRIWDVKT---GKCLKTLPAHS-------------------------------DPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EEEEE-TTSCEEEEETTT---CCEEEEECCCS-------------------------------SCEEEEEECTTSSEEEE
T ss_pred EEEEe-CCCcEEEEECCC---CEEEEEecCCC-------------------------------CcEEEEEEcCCCCEEEE
Confidence 99888 688999999853 23333332111 13578999999999998
Q ss_pred EcC--CCCCCC
Q psy11412 274 SSS--LFSPWD 282 (290)
Q Consensus 274 an~--~~~~~~ 282 (290)
++. .+.-||
T Consensus 167 ~~~d~~i~~wd 177 (312)
T 4ery_A 167 SSYDGLCRIWD 177 (312)
T ss_dssp EETTSCEEEEE
T ss_pred EeCCCcEEEEE
Confidence 865 444454
No 67
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.24 E-value=3e-10 Score=104.55 Aligned_cols=183 Identities=8% Similarity=0.062 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|+|||++|+++.. +++|++||+.. .+.+..+..+ ....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~-dg~v~iwd~~~---~~~~~~~~~h-------------------------------~~~v 184 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGK-DFSVKVWDLSQ---KAVLKSYNAH-------------------------------SSEV 184 (357)
T ss_dssp SCEEEEEECSSSSEEEEEET-TSCEEEEETTT---TEEEEEECCC-------------------------------SSCE
T ss_pred CCEEEEEECCCCCEEEEEeC-CCeEEEEECCC---CcEEEEEcCC-------------------------------CCCE
Confidence 35789999999999988775 88999999865 3333322111 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+|+++.++++... ++ .+.++++.. .+.+..... ......+..++|+||+.
T Consensus 185 ~~v~~s~~~~~~~~s~~~--------------dg-~v~~wd~~~---~~~~~~~~~-------~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGE--------------DG-RILLWDTRK---PKPATRIDF-------CASDTIPTSVTWHPEKD 239 (357)
T ss_dssp EEEEECTTCSSCEEEEET--------------TS-CEEECCTTS---SSCBCBCCC-------TTCCSCEEEEEECTTST
T ss_pred EEEEEccCCCceeeeecc--------------CC-ceEEEECCC---Cceeeeeee-------ccccccccchhhhhccc
Confidence 889999999755544331 22 333344322 111111100 00123567899999865
Q ss_pred -EEEEEeCCCCcEEEEEecCCCCce-------EeeEE---eeCcee----cCCCceEEecCCCCCCCCCcceeecccccC
Q psy11412 193 -YLYTSNWMHGDIRQYDIRDTAHPV-------LVGQI---FLGGKI----QSDSGVTVIDDPELDKQPDPVIIKGRRFTG 257 (290)
Q Consensus 193 -~Lyvs~r~~~~V~v~Dv~d~~~~~-------~v~~i---~~Gg~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (290)
+|+++. .++.|.+||+.+..... .+..+ +.++.+ ..|++|++||..... .....+. .+
T Consensus 240 ~~la~g~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~----~~~~~~H--~~ 312 (357)
T 4g56_B 240 DTFACGD-ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE----VFRDLSH--RD 312 (357)
T ss_dssp TEEEEEE-SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE----EEEECCC--SS
T ss_pred ceEEEee-cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc----EeEECCC--CC
Confidence 555555 68899999996432111 11112 223222 568889999875421 0111111 23
Q ss_pred CcceEEEcc-CCCEEEEEcC--CCCCCC
Q psy11412 258 SSQMFQLSL-DGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 258 ~P~~~a~sP-DG~~L~Van~--~~~~~~ 282 (290)
..+.++|+| ||++|+.++. ...-|+
T Consensus 313 ~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 313 FVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 579999999 8999988864 455554
No 68
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=2.6e-10 Score=102.23 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=73.0
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|++++|+|||++||+++...+.+.++.+.. .++ .+. ..+.....+. ....|.+|++++
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~--~~G-~~~--------~~~~~~~~~~---------~~~~p~g~~~d~ 208 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL--QTG-QIS--------NRRSVYKLEK---------EEQIPDGMCIDA 208 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECT--TTC-CEE--------EEEEEEECCG---------GGCEEEEEEEBT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccC--CCC-ccc--------CcEEEEECCC---------CCCCCCeeEECC
Confidence 46899999999999999876433333222210 111 110 0011111000 124578899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc-cCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS-LDG 268 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s-PDG 268 (290)
||+ ||++++..+.|.+||.. +.+.+..+.+... .|..++|+ ||+
T Consensus 209 ~G~-lwva~~~~~~v~~~d~~---tG~~~~~i~~p~~-------------------------------~~t~~~f~g~d~ 253 (297)
T 3g4e_A 209 EGK-LWVACYNGGRVIRLDPV---TGKRLQTVKLPVD-------------------------------KTTSCCFGGKNY 253 (297)
T ss_dssp TSC-EEEEEETTTEEEEECTT---TCCEEEEEECSSS-------------------------------BEEEEEEESGGG
T ss_pred CCC-EEEEEcCCCEEEEEcCC---CceEEEEEECCCC-------------------------------CceEEEEeCCCC
Confidence 995 79998888889998653 3456666665431 68999998 999
Q ss_pred CEEEEEcC
Q psy11412 269 KRIYVSSS 276 (290)
Q Consensus 269 ~~L~Van~ 276 (290)
++|||+++
T Consensus 254 ~~L~vt~~ 261 (297)
T 3g4e_A 254 SEMYVTCA 261 (297)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEcC
Confidence 99999987
No 69
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.23 E-value=5.2e-10 Score=101.75 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=109.7
Q ss_pred ceEEEEE-----cC-CCCEEEEEeCCCCeEEEEEcCCCCCc----eeeeEEeecccccCCCceEEecCCCCcCCCCccee
Q psy11412 34 MVTDILI-----SL-DDRYLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVII 103 (290)
Q Consensus 34 ~p~~va~-----Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~----~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (290)
.+..++| ++ ||++|++++. +++|++||+...... ..... ..++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~-D~~v~iWd~~~~~~~~~~~~~~~~-l~~h------------------------- 75 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSR-DKTVMIWKLYEEEQNGYFGIPHKA-LTGH------------------------- 75 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEET-TSCEEEEEECSSCCSSBSEEEEEE-ECCC-------------------------
T ss_pred hhhheeeEEEeecCCCCCEEEEEcC-CCEEEEEECCcCCcccccccccch-hccC-------------------------
Confidence 5788998 77 9999988775 899999999653211 11111 1110
Q ss_pred eccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCcee
Q psy11412 104 KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVT 183 (290)
Q Consensus 104 ~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~ 183 (290)
......++|+|++++|+.++. + +.+.+|++.. .+.+..+ .+ ......
T Consensus 76 -----~~~V~~~~~~~~~~~l~s~s~---------------D-~~v~lwd~~~---~~~~~~~-----~~----h~~~v~ 122 (343)
T 2xzm_R 76 -----NHFVSDLALSQENCFAISSSW---------------D-KTLRLWDLRT---GTTYKRF-----VG----HQSEVY 122 (343)
T ss_dssp -----SSCEEEEEECSSTTEEEEEET---------------T-SEEEEEETTS---SCEEEEE-----EC----CCSCEE
T ss_pred -----CCceEEEEECCCCCEEEEEcC---------------C-CcEEEEECCC---CcEEEEE-----cC----CCCcEE
Confidence 145788999999999987654 2 2444444322 1111110 01 124577
Q ss_pred EEEEccCCCEEEEEeCCCCcEEEEEecCC---------CCceEeeEE---eeC----------ce---ecCCCceEEecC
Q psy11412 184 DILISLDDRYLYTSNWMHGDIRQYDIRDT---------AHPVLVGQI---FLG----------GK---IQSDSGVTVIDD 238 (290)
Q Consensus 184 ~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~---------~~~~~v~~i---~~G----------g~---~~~~~~v~~~~~ 238 (290)
.++|||||++|+++. .+++|.+||+... .+...+..+ +.+ .. ...|++|.+|+.
T Consensus 123 ~v~~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 201 (343)
T 2xzm_R 123 SVAFSPDNRQILSAG-AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201 (343)
T ss_dssp EEEECSSTTEEEEEE-TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEc-CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC
Confidence 899999999999888 6899999998421 011111111 111 00 135788999984
Q ss_pred CCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 239 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
... ....+.+. .+....++|+|||++|+++.. ...-||-
T Consensus 202 ~~~----~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 202 NFQ----IRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp TTE----EEEEEECC--SSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred CCc----eeEEEcCc--cccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 321 00112222 135789999999999999865 4555653
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.22 E-value=2.5e-10 Score=103.98 Aligned_cols=186 Identities=11% Similarity=0.060 Sum_probs=103.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...+..++|+|||++|++++. +++|++||+...........+ .+ -...
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~-d~~v~vwd~~~~~~~~~~~~~-~~------------------------------~~~~ 102 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQ-DRNAYVYEKRPDGTWKQTLVL-LR------------------------------LNRA 102 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEET-TSSEEEC------CCCCEEEC-CC------------------------------CSSC
T ss_pred CceEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEe-cc------------------------------cCCc
Confidence 346789999999999988875 789999999763211111111 01 0146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
...++|+|+|++|++++. ++ .+.+++.........+..+. + +.......++|+|||
T Consensus 103 v~~~~~~~~~~~l~~~~~---------------d~-~i~iwd~~~~~~~~~~~~~~-----~---~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 103 ATFVRWSPNEDKFAVGSG---------------AR-VISVCYFEQENDWWVSKHLK-----R---PLRSTILSLDWHPNN 158 (377)
T ss_dssp EEEEECCTTSSCCEEEES---------------SS-CEEECCC-----CCCCEEEC-----S---SCCSCEEEEEECTTS
T ss_pred eEEEEECCCCCEEEEEec---------------CC-eEEEEEECCcccceeeeEee-----c---ccCCCeEEEEEcCCC
Confidence 788999999999998765 12 23333332210000011100 0 012457889999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCC---------------CceEee---------EE---eeCcee---cCCCceEEecCCCC
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTA---------------HPVLVG---------QI---FLGGKI---QSDSGVTVIDDPEL 241 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~---------------~~~~v~---------~i---~~Gg~~---~~~~~v~~~~~~~~ 241 (290)
++|+++. .++.|.+||+.... ....+. .+ +.|..+ ..|++|.+|+....
T Consensus 159 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 159 VLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred CEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999888 68899999984210 011111 11 111111 46777888886543
Q ss_pred CCCCC-cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 242 DKQPD-PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 242 ~~~~~-~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
...+. ...+.+.. +....++|+|||++|+++..
T Consensus 238 ~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 238 EQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp TSCEEECCCEECSS--SCEEEEEEEETTEEEEEESS
T ss_pred CCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcC
Confidence 22110 11222221 24689999999999988855
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.22 E-value=5e-11 Score=110.46 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=88.0
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
-++.|+...+.........-...+..++++|||++|++++. +|.|++||+.. .+.+..+..++
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~---~~~~~~~~~~~------------- 218 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-DKRVRVIEPRK---GTVVAEKDRPH------------- 218 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-TSEEEEEETTT---TEEEEEEECSS-------------
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-CCcEEEEeCCC---CceeeeeccCC-------------
Confidence 34566665554433200123446789999999999998875 79999999865 33333321221
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
.+..+..++|+|+|++|++..... .++.+.+++..... ..+.. .
T Consensus 219 ----------------~~~~~~~~~~~~~~~~l~~g~~~~-------------~d~~i~iwd~~~~~--~~~~~---~-- 262 (402)
T 2aq5_A 219 ----------------EGTRPVHAVFVSEGKILTTGFSRM-------------SERQVALWDTKHLE--EPLSL---Q-- 262 (402)
T ss_dssp ----------------CSSSCCEEEECSTTEEEEEEECTT-------------CCEEEEEEETTBCS--SCSEE---E--
T ss_pred ----------------CCCcceEEEEcCCCcEEEEeccCC-------------CCceEEEEcCcccc--CCceE---E--
Confidence 113478899999999888862100 12233334432210 00000 0
Q ss_pred CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
.+........++++|||++||++...++.|.+||+.+
T Consensus 263 ---~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 263 ---ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp ---ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred ---eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 0112234677999999999998886799999999965
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.22 E-value=9.5e-10 Score=99.17 Aligned_cols=159 Identities=8% Similarity=-0.027 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|++++. ++.|.+||+... ..+.+..+... .....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~-d~~v~i~~~~~~-~~~~~~~~~~h-------------------------------~~~v~ 56 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN-NHEVHIYEKSGN-KWVQVHELKEH-------------------------------NGQVT 56 (372)
T ss_dssp CCCEEEECTTSSEEEEECS-SSEEEEEEEETT-EEEEEEEEECC-------------------------------SSCEE
T ss_pred CeEEEEECCCCCEEEEEeC-CCEEEEEeCCCC-cEEeeeeecCC-------------------------------CCccc
Confidence 4678999999999988764 899999998652 12233322211 14678
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|+|++|++++. ++ .+.+++... .+...... . ......+..++|+|||++
T Consensus 57 ~~~~~~~~~~l~~~~~---------------dg-~i~vwd~~~---~~~~~~~~---~----~~~~~~v~~~~~~~~~~~ 110 (372)
T 1k8k_C 57 GVDWAPDSNRIVTCGT---------------DR-NAYVWTLKG---RTWKPTLV---I----LRINRAARCVRWAPNEKK 110 (372)
T ss_dssp EEEEETTTTEEEEEET---------------TS-CEEEEEEET---TEEEEEEE---C----CCCSSCEEEEEECTTSSE
T ss_pred EEEEeCCCCEEEEEcC---------------CC-eEEEEECCC---CeeeeeEE---e----ecCCCceeEEEECCCCCE
Confidence 8999999999998765 22 344444422 11010000 0 011245778999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .++.|.+||+...........+..+. .+....++|+|||++|++
T Consensus 111 l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~------------------------------~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 111 FAVGS-GSRVISICYFEQENDWWVCKHIKKPI------------------------------RSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEEEE-TTSSEEEEEEETTTTEEEEEEECTTC------------------------------CSCEEEEEECTTSSEEEE
T ss_pred EEEEe-CCCEEEEEEecCCCcceeeeeeeccc------------------------------CCCeeEEEEcCCCCEEEE
Confidence 99988 68899999996533222222221111 125789999999999999
Q ss_pred EcC--CCCCCC
Q psy11412 274 SSS--LFSPWD 282 (290)
Q Consensus 274 an~--~~~~~~ 282 (290)
++. ...-||
T Consensus 160 ~~~dg~i~~~d 170 (372)
T 1k8k_C 160 GSCDFKCRIFS 170 (372)
T ss_dssp EETTSCEEEEE
T ss_pred EcCCCCEEEEE
Confidence 864 455565
No 73
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.22 E-value=5.9e-10 Score=103.57 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=99.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|+++.. +++|++||+.. .+.+..+. ++ .....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~-d~~i~iwd~~~---~~~~~~~~-~h------------------------------~~~v~ 169 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAE-DRLIRIWDIEN---RKIVMILQ-GH------------------------------EQDIY 169 (393)
T ss_dssp BEEEEEECTTSSEEEEEET-TSCEEEEETTT---TEEEEEEC-CC------------------------------SSCEE
T ss_pred eEEEEEECCCCCEEEEEcC-CCeEEEEECCC---CcEEEEEc-cC------------------------------CCCEE
Confidence 4779999999999998875 89999999965 23332221 11 14578
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc-CCC
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL-DDR 192 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp-DGr 192 (290)
.++|+|+|++|+.++. + +.+.+|++.. .+.... +........++++| ||+
T Consensus 170 ~~~~~p~~~~l~s~s~---------------d-~~v~iwd~~~---~~~~~~----------~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 170 SLDYFPSGDKLVSGSG---------------D-RTVRIWDLRT---GQCSLT----------LSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp EEEECTTSSEEEEEET---------------T-SEEEEEETTT---TEEEEE----------EECSSCEEEEEECSTTCC
T ss_pred EEEEcCCCCEEEEecC---------------C-CcEEEEECCC---CeeEEE----------EEcCCCcEEEEEECCCCC
Confidence 8999999999987664 2 2343344322 111110 01123466799999 999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .++.|.+||+.. ...+..+..... ...+. .+....++|+|||++|+
T Consensus 221 ~l~~~s-~d~~v~iwd~~~---~~~~~~~~~~~~----------------------~~~~h--~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 221 YIAAGS-LDRAVRVWDSET---GFLVERLDSENE----------------------SGTGH--KDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEEEE-TTSCEEEEETTT---CCEEEEEC----------------------------CCC--SSCEEEEEECTTSSEEE
T ss_pred EEEEEc-CCCcEEEEECCC---CcEEEeeccccc----------------------CCCCC--CCCEEEEEECCCCCEEE
Confidence 998888 689999999853 233333211100 00000 12478899999999999
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
++.. .+.-||
T Consensus 273 s~s~d~~v~~wd 284 (393)
T 1erj_A 273 SGSLDRSVKLWN 284 (393)
T ss_dssp EEETTSEEEEEE
T ss_pred EEeCCCEEEEEE
Confidence 9864 455565
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.8e-09 Score=96.67 Aligned_cols=187 Identities=17% Similarity=0.074 Sum_probs=109.3
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++.|+...+..... ..-...+.+++|+|||++|++++. +|.|.+||+... +.+..+..
T Consensus 57 ~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~---~~~~~~~~---------------- 114 (369)
T 3zwl_B 57 SVWYSLNGERLGTL--DGHTGTIWSIDVDCFTKYCVTGSA-DYSIKLWDVSNG---QCVATWKS---------------- 114 (369)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TTEEEEEETTTC---CEEEEEEC----------------
T ss_pred EEEeCCCchhhhhh--hhcCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---cEEEEeec----------------
Confidence 45566555443332 012346789999999999998875 899999999653 33332221
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
...+..++|+|+|++++++...... ..+.+..++.........+.........
T Consensus 115 ----------------~~~v~~~~~~~~~~~l~~~~~~~~~-----------~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 115 ----------------PVPVKRVEFSPCGNYFLAILDNVMK-----------NPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp ----------------SSCEEEEEECTTSSEEEEEECCBTT-----------BCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred ----------------CCCeEEEEEccCCCEEEEecCCccC-----------CCCEEEEEEecCCccceeecccccceee
Confidence 1467889999999999987652000 0123333333221000000000000000
Q ss_pred c-cccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 173 S-WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 173 ~-~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
. ...........++++|||++|+++. .++.|.+||+... ...+..+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~--~~~~~~~~~~~-------------------------- 218 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNN--YEYVDSIDLHE-------------------------- 218 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTT--TEEEEEEECCS--------------------------
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCC--cEeEEEEecCC--------------------------
Confidence 0 0000112678899999999999988 6899999998542 23333332211
Q ss_pred cccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
+....++|+|||++|++++. .+.-||
T Consensus 219 -----~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 219 -----KSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp -----SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -----CceeEEEECCCCCEEEEecCCceEEEEE
Confidence 25788999999999999864 344454
No 75
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=1.4e-10 Score=110.71 Aligned_cols=151 Identities=11% Similarity=0.121 Sum_probs=95.5
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.|.+|+++| ++..||+++.. +.|+++|... .....+ ..+ +..|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~-~~v~~~---~~~-------------------------------~~~P 181 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEK-EYVSTV---YSG-------------------------------LSKV 181 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTT-TEEEEE---ECC-------------------------------CSCE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCC-CEEEEE---ecC-------------------------------CCCc
Confidence 799999999 68899999986 8899998753 111111 111 2579
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++|+|+++|++||+++...+.... .+. ..+. ...... .. .++....|.+++++|++.
T Consensus 182 ~~ia~d~~G~~lyvad~~~~~~~~-----------~v~---~~~~--~g~~~~--~~-----~l~~~~~p~giavdp~~g 238 (430)
T 3tc9_A 182 RTICWTHEADSMIITNDQNNNDRP-----------NNY---ILTR--ESGFKV--IT-----ELTKGQNCNGAETHPING 238 (430)
T ss_dssp EEEEECTTSSEEEEEECCSCTTSE-----------EEE---EEEG--GGTSCS--EE-----EEEECSSCCCEEECTTTC
T ss_pred ceEEEeCCCCEEEEEeCCCCcccc-----------eEE---EEeC--CCceee--ee-----eeccCCCceEEEEeCCCC
Confidence 999999999999999863221110 000 0000 000000 00 001123567799999666
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+||+++++++.|..|+... .........++ ..+|++++|+|||++||
T Consensus 239 ~lyv~d~~~~~V~~~~~~~---~~~~~~~~~~~------------------------------~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 239 ELYFNSWNAGQVFRYDFTT---QETTPLFTIQD------------------------------SGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp CEEEEETTTTEEEEEETTT---TEEEEEEECSS------------------------------SSCCEEEEECTTSSEEE
T ss_pred EEEEEECCCCEEEEEECCC---CcEEEEEEcCC------------------------------CCcceeEEEcCCCCEEE
Confidence 7999999999999998742 12111111211 12799999999999999
Q ss_pred EEcC
Q psy11412 273 VSSS 276 (290)
Q Consensus 273 Van~ 276 (290)
+++.
T Consensus 286 v~d~ 289 (430)
T 3tc9_A 286 IVVV 289 (430)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9975
No 76
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.22 E-value=2.1e-09 Score=97.02 Aligned_cols=172 Identities=12% Similarity=0.166 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|+++.. +++|++||+.+. +.+..+. ++ .....
T Consensus 67 ~v~~~~~s~dg~~l~s~s~-D~~v~~wd~~~~---~~~~~~~-~h------------------------------~~~v~ 111 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW-DKTLRLWDVATG---ETYQRFV-GH------------------------------KSDVM 111 (319)
T ss_dssp CEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEEE-CC------------------------------SSCEE
T ss_pred cEEEEEECCCCCEEEEEeC-CCEEEEEECCCC---CeeEEEc-cC------------------------------CCcEE
Confidence 5678999999999998875 899999999652 3333221 21 14567
Q ss_pred EEEEccCCCEEEEEcCCC--CCcceeecc--cccCCCceeecceeeeee----ecccccc-cCccccCccccC-------
Q psy11412 114 MFQLSLDGKRIYVSSSLF--SPWDKEIYP--DLVKTDAAFGSDEIMEFI----QRNEMRS-MPLSSLGSWKYP------- 177 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~--~~~d~~~~~--~~~~~g~~~~~~~~~~~~----~~~~i~~-~p~~~~~~~~~~------- 177 (290)
.++|+|++++|+..+... ..|+..... ........+..+...... ....+.+ -..+.+..|.+.
T Consensus 112 ~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 191 (319)
T 3frx_A 112 SVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191 (319)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee
Confidence 899999999888776522 123221000 000000000000000000 0000000 000111112111
Q ss_pred ---CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412 178 ---ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR 254 (290)
Q Consensus 178 ---~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (290)
.......++|||||++|+++. .++.|.+||+.. .+.+..+....
T Consensus 192 ~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~~~----------------------------- 238 (319)
T 3frx_A 192 FIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA---KKAMYTLSAQD----------------------------- 238 (319)
T ss_dssp ECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT---TEEEEEEECCS-----------------------------
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC---CcEEEEecCCC-----------------------------
Confidence 123577899999999999888 689999999864 34444433211
Q ss_pred ccCCcceEEEccCCCEEEEEcC
Q psy11412 255 FTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 255 ~~~~P~~~a~sPDG~~L~Van~ 276 (290)
....++|+|||++|+++..
T Consensus 239 ---~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 239 ---EVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp ---CEEEEEECSSSSEEEEEET
T ss_pred ---cEEEEEEcCCCCEEEEEcC
Confidence 4688999999999998865
No 77
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.20 E-value=5.8e-10 Score=101.31 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=76.1
Q ss_pred CceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 33 AMVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 33 ~~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
..+..++++| +|++|++++. +|+|++||+.... .+...... ...
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~---~~~~~~~~------------------------------~~~ 171 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADN-RGTIGFQSYEDDS---QYIVHSAK------------------------------SDV 171 (343)
T ss_dssp SCEEEEECCC---CCEEEEEET-TCCEEEEESSSSC---EEEEECCC------------------------------SSC
T ss_pred CCEEEEEcCCCCCCCEEEEEeC-CCcEEEEECCCCc---EEEEEecC------------------------------CCC
Confidence 3588999999 9999988875 8999999997532 22111010 013
Q ss_pred CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccc-cccCccccCccccCCCCceeEEEEcc
Q psy11412 111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEM-RSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i-~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
....++|+|||++|++.+. ++ .+.++++.. ...+ ..+. .........|+|||
T Consensus 172 ~i~~~~~~pdg~~lasg~~---------------dg-~i~iwd~~~---~~~~~~~~~--------~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSP---------------DG-ILDVYNLSS---PDQASSRFP--------VDEEAKIKEVKFAD 224 (343)
T ss_dssp CCCEEEECTTSCEEEEECT---------------TS-CEEEEESSC---TTSCCEECC--------CCTTSCEEEEEECT
T ss_pred ceEEEEECCCCCEEEEEcC---------------CC-EEEEEECCC---CCCCccEEe--------ccCCCCEEEEEEeC
Confidence 5778999999999998654 22 344444432 1111 1111 00124678899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
||++|+++. +++|.+||+..
T Consensus 225 ~g~~l~s~~--~~~v~iwd~~~ 244 (343)
T 3lrv_A 225 NGYWMVVEC--DQTVVCFDLRK 244 (343)
T ss_dssp TSSEEEEEE--SSBEEEEETTS
T ss_pred CCCEEEEEe--CCeEEEEEcCC
Confidence 999999888 44999999964
No 78
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.20 E-value=1.8e-09 Score=96.60 Aligned_cols=183 Identities=8% Similarity=0.050 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|+++.. +++|++||+.+. +.+..+..+ .....
T Consensus 57 ~v~~~~~~~~~~~l~s~s~-d~~i~vwd~~~~---~~~~~~~~h-------------------------------~~~v~ 101 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD-DFRIRVFNYNTG---EKVVDFEAH-------------------------------PDYIR 101 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET-TSEEEEEETTTC---CEEEEEECC-------------------------------SSCEE
T ss_pred cEEEEEEeCCCCEEEEECC-CCEEEEEECCCC---cEEEEEeCC-------------------------------CCcEE
Confidence 4678999999999998875 899999999753 223222111 14578
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc-CCC
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL-DDR 192 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp-DGr 192 (290)
.++|+|++++|+.++. ++ .+.+|+... ...+.. ...+ .......++|+| |++
T Consensus 102 ~~~~~~~~~~l~sgs~---------------D~-~v~lWd~~~---~~~~~~----~~~~----h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSD---------------DL-TVKLWNWEN---NWALEQ----TFEG----HEHFVMCVAFNPKDPS 154 (304)
T ss_dssp EEEECSSSSEEEEEET---------------TS-CEEEEEGGG---TTEEEE----EECC----CCSCEEEEEECTTCTT
T ss_pred EEEEcCCCCEEEEECC---------------CC-eEEEEECCC---Ccchhh----hhcc----cCCcEEEEEECCCCCC
Confidence 8999999999987765 22 344444322 111110 0011 123567899999 688
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceE--------eeEE---ee-Cce-e---cCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVL--------VGQI---FL-GGK-I---QSDSGVTVIDDPELDKQPDPVIIKGRRFT 256 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~--------v~~i---~~-Gg~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (290)
.|+++. .+++|.+||+........ +..+ +. .+. + ..|++|++||..... ....+.|..
T Consensus 155 ~l~sgs-~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~h~-- 228 (304)
T 2ynn_A 155 TFASGC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHM-- 228 (304)
T ss_dssp EEEEEE-TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE---EEEEEECCS--
T ss_pred EEEEEe-CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc---cceeeCCCC--
Confidence 888877 689999999854221111 1111 11 111 1 568889999875421 011222222
Q ss_pred CCcceEEEccCCCEEEEEcC--CCCCCCcc
Q psy11412 257 GSSQMFQLSLDGKRIYVSSS--LFSPWDKE 284 (290)
Q Consensus 257 ~~P~~~a~sPDG~~L~Van~--~~~~~~~~ 284 (290)
+....++|+|++++|+.+.. .+.-|+..
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 24688999999999999865 66667643
No 79
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.20 E-value=8.2e-10 Score=108.98 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=109.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...+..+++||||++|+++.. +|.|.+||... ++..+. +.. + -....
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~-dg~V~iwd~~~-----~l~~l~-~~~------------------~--------~~~~s 131 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN-NGNVSVFKDNK-----MLTNLD-SKG------------------N--------LSSRT 131 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET-TSCEEEEETTE-----EEEECC-CSS------------------C--------STTTC
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCc-----eeeecc-CCC------------------c--------ccccc
Confidence 347899999999999998875 88999999532 333222 210 0 00135
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc-------ccccCccccCccccCCCCceeE
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE-------MRSMPLSSLGSWKYPARSMVTD 184 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~-------i~~~p~~~~~~~~~~~~~~~~~ 184 (290)
.+.++|||||++|+++++ + +.+.+++..+ ... +.++... ..+ ....+..
T Consensus 132 v~svafSPDG~~LAsgs~---------------D-GtVkIWd~~~---~~l~~~~~i~l~ti~~~-~~g----h~~~V~s 187 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNE---------------D-GELQFFSIRK---NSENTPEFYFESSIRLS-DAG----SKDWVTH 187 (588)
T ss_dssp EEEEEECSSSSCEEEEET---------------T-SEEEEEECCC---CTTTCCCCEEEEEEECS-CTT----CCCCEEE
T ss_pred EEEEEEcCCCCEEEEEcC---------------C-CEEEEEECCC---Cccccccceeeeeeecc-ccc----ccccEEE
Confidence 788999999999999876 2 2444455432 110 1111100 001 1247889
Q ss_pred EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEE-----------ee-Ccee--cCCCceEEecCCCCCCCCCccee
Q psy11412 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI-----------FL-GGKI--QSDSGVTVIDDPELDKQPDPVII 250 (290)
Q Consensus 185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i-----------~~-Gg~~--~~~~~v~~~~~~~~~~~~~~~~~ 250 (290)
+++|||| |.++. .+++|.+||+..........++ .- |..+ ..+++|.+|+..+.. ...+
T Consensus 188 VawSPdg--Laass-~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~----~~~~ 260 (588)
T 2j04_A 188 IVWYEDV--LVAAL-SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYS----ISSL 260 (588)
T ss_dssp EEEETTE--EEEEE-TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTE----EEEE
T ss_pred EEEcCCc--EEEEe-CCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCe----EEEE
Confidence 9999999 55665 6899999999643211001111 00 3222 446789999966521 1012
Q ss_pred e-cccccCCcceEEE--ccCCCEEEEEcC
Q psy11412 251 K-GRRFTGSSQMFQL--SLDGKRIYVSSS 276 (290)
Q Consensus 251 ~-~~~~~~~P~~~a~--sPDG~~L~Van~ 276 (290)
+ |. .+....|+| +|||+.|++|.+
T Consensus 261 ~~gh--~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 261 KTGS--LENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp ECSC--CSCCCEEEETTCSSCEEEEECSS
T ss_pred EcCC--CceEEEEEeeeCCCCCEEEEEcC
Confidence 2 32 235789999 999999999985
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.19 E-value=7.8e-10 Score=99.00 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=77.5
Q ss_pred CCceEEEEEcCC---CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412 32 PAMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 108 (290)
Q Consensus 32 ~~~p~~va~SpD---Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 108 (290)
...+..++|+|| |++|++++. +|.|++||+.+... .....+ .++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~-~~h------------------------------ 85 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSW-ANDVRCWEVQDSGQ-TIPKAQ-QMH------------------------------ 85 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEET-TSEEEEEEECTTSC-EEEEEE-EEC------------------------------
T ss_pred CCceEEEEEcCCCCCceEEEEECC-CCcEEEEEcCCCCc-eeEEEe-ccc------------------------------
Confidence 347889999999 688888775 79999999975222 111211 111
Q ss_pred CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE-
Q psy11412 109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI- 187 (290)
Q Consensus 109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~- 187 (290)
......++|+|+|++|++++. ++ .+.+++... .+.+.. .........+++
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~---------------dg-~v~iwd~~~---~~~~~~----------~~~~~~v~~~~~~ 136 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASC---------------DK-TAKMWDLSS---NQAIQI----------AQHDAPVKTIHWI 136 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEET---------------TS-EEEEEETTT---TEEEEE----------EECSSCEEEEEEE
T ss_pred cCCEEEEEECcCCCEEEEEcC---------------CC-cEEEEEcCC---CCceee----------ccccCceEEEEEE
Confidence 146788999999999998765 22 333344322 111110 001235677888
Q ss_pred -ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 188 -SLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 188 -SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|||++|+++. .++.|.+||+..
T Consensus 137 ~~~~~~~l~~~~-~dg~i~vwd~~~ 160 (368)
T 3mmy_A 137 KAPNYSCVMTGS-WDKTLKFWDTRS 160 (368)
T ss_dssp ECSSCEEEEEEE-TTSEEEEECSSC
T ss_pred eCCCCCEEEEcc-CCCcEEEEECCC
Confidence 99999999888 688999999854
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.19 E-value=1e-09 Score=98.95 Aligned_cols=153 Identities=5% Similarity=-0.114 Sum_probs=98.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...+..++++|||++|++++. ++.|.+||+...........+..++ ...
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~------------------------------~~~ 144 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPI------------------------------RST 144 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTC------------------------------CSC
T ss_pred CCceeEEEECCCCCEEEEEeC-CCEEEEEEecCCCcceeeeeeeccc------------------------------CCC
Confidence 446889999999999998875 7899999997643222222211110 146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeee---------------eeecccccccCccccCcccc
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIME---------------FIQRNEMRSMPLSSLGSWKY 176 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~i~~~p~~~~~~~~~ 176 (290)
+..++|+|++++|++.+.. + .+..+++.. ......+.. +
T Consensus 145 i~~~~~~~~~~~l~~~~~d---------------g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 198 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCD---------------F-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE----------S 198 (372)
T ss_dssp EEEEEECTTSSEEEEEETT---------------S-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE----------C
T ss_pred eeEEEEcCCCCEEEEEcCC---------------C-CEEEEEcccccccccccccccccccchhhheEe----------c
Confidence 7889999999999987651 1 222222110 000001110 1
Q ss_pred C-CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccc
Q psy11412 177 P-ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 255 (290)
Q Consensus 177 ~-~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (290)
. .......++|+|||++|+++. .++.|.+||+.. .+.+..+....
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~~------------------------------ 244 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADK---KMAVATLASET------------------------------ 244 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGG---TTEEEEEECSS------------------------------
T ss_pred CCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCC---CceeEEEccCC------------------------------
Confidence 1 123577899999999999988 689999999964 23444433211
Q ss_pred cCCcceEEEccCCCEEEEEcC
Q psy11412 256 TGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 256 ~~~P~~~a~sPDG~~L~Van~ 276 (290)
.....++|+|||++|+++..
T Consensus 245 -~~v~~~~~~~~~~~l~~~~d 264 (372)
T 1k8k_C 245 -LPLLAVTFITESSLVAAGHD 264 (372)
T ss_dssp -CCEEEEEEEETTEEEEEETT
T ss_pred -CCeEEEEEecCCCEEEEEeC
Confidence 14688999999999988844
No 82
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.19 E-value=3e-10 Score=104.57 Aligned_cols=160 Identities=11% Similarity=0.096 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCEEEEEeCC-----CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412 33 AMVTDILISLDDRYLYTSNWM-----HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR 107 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~-----~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 107 (290)
..+.+++|||||++|+++... +++|++|+..+............+ .
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~----------------------------~- 93 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ----------------------------T- 93 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE----------------------------C-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC----------------------------C-
Confidence 467899999999999988642 567888887542211111000011 0
Q ss_pred cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412 108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI 187 (290)
Q Consensus 108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~ 187 (290)
..+...++|+||++.|.. +. ++ .+.+|++.. .+.+.... ... ......+..++|
T Consensus 94 -~~~V~~~~~s~d~~~l~~-s~---------------dg-~v~lWd~~~---~~~~~~~~-~~~----~~h~~~V~~v~~ 147 (357)
T 4g56_B 94 -EAGVTDVAWVSEKGILVA-SD---------------SG-AVELWEILE---KESLLVNK-FAK----YEHDDIVKTLSV 147 (357)
T ss_dssp -SSCEEEEEEETTTEEEEE-ET---------------TS-CEEEC-----------CCCC-EEE----CCCSSCEEEEEE
T ss_pred -CCCEEEEEEcCCCCEEEE-EC---------------CC-EEEEeeccc---cceeEEEe-ecc----CCCCCCEEEEEE
Confidence 146788999999986654 32 12 344444432 11111000 000 011245788999
Q ss_pred ccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC
Q psy11412 188 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD 267 (290)
Q Consensus 188 SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD 267 (290)
||||++|+++. .+++|.+||+.. .+.+..+.... +..+.++|+|+
T Consensus 148 spdg~~l~sgs-~dg~v~iwd~~~---~~~~~~~~~h~-------------------------------~~v~~v~~s~~ 192 (357)
T 4g56_B 148 FSDGTQAVSGG-KDFSVKVWDLSQ---KAVLKSYNAHS-------------------------------SEVNCVAACPG 192 (357)
T ss_dssp CSSSSEEEEEE-TTSCEEEEETTT---TEEEEEECCCS-------------------------------SCEEEEEECTT
T ss_pred CCCCCEEEEEe-CCCeEEEEECCC---CcEEEEEcCCC-------------------------------CCEEEEEEccC
Confidence 99999999888 688999999853 34444332111 24678999999
Q ss_pred CCEE-EEEcC--CCCCCC
Q psy11412 268 GKRI-YVSSS--LFSPWD 282 (290)
Q Consensus 268 G~~L-~Van~--~~~~~~ 282 (290)
++.+ +++.. .+.-||
T Consensus 193 ~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp CSSCEEEEETTSCEEECC
T ss_pred CCceeeeeccCCceEEEE
Confidence 8744 44432 455565
No 83
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.19 E-value=1.4e-09 Score=99.22 Aligned_cols=170 Identities=10% Similarity=0.069 Sum_probs=105.1
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
.+|++...++.... +....|.++++++++.+||+++...+.|..++............+...
T Consensus 13 ~~i~~~~~~~~~~~---~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--------------- 74 (316)
T 1ijq_A 13 RKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------------- 74 (316)
T ss_dssp EEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------------
T ss_pred EEEECCCcceEehh---cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC---------------
Confidence 56676655443322 334589999999999999999998899999987531000111111000
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
.-..|.+|++++.++.||+++...+.+.++.. ++... ..+. .
T Consensus 75 ---------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~-----~g~~~-----------~~~~--~----- 116 (316)
T 1ijq_A 75 ---------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKR-----------KTLF--R----- 116 (316)
T ss_dssp ---------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEET-----TSSSE-----------EEEE--E-----
T ss_pred ---------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeC-----CCCce-----------EEEE--E-----
Confidence 01478999999999999998763332222110 11100 0000 0
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
.....|.+|+++|++++||+++++. +.|..++.+ ....+.+. ...
T Consensus 117 ----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~---~~~-------------------------- 162 (316)
T 1ijq_A 117 ----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV---TEN-------------------------- 162 (316)
T ss_dssp ----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE---CSS--------------------------
T ss_pred ----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE---ECC--------------------------
Confidence 0124678999999999999999876 788888773 21111111 011
Q ss_pred cccccCCcceEEEccCCCEEEEEcC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
-.+|++++++|++++||+++.
T Consensus 163 ----~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 163 ----IQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp ----CSCEEEEEEETTTTEEEEEET
T ss_pred ----CCCceEEEEeccCCEEEEEEC
Confidence 027999999999999999976
No 84
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.18 E-value=7.1e-10 Score=103.03 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|||||++|+++. ++++.+|++.+.. .+..+......... ...+.... ........+
T Consensus 66 ~V~~v~fspdg~~la~g~--~~~v~i~~~~~g~---~~~~l~~~~~~~~~-------~~~~~~~~------~~~~~~~v~ 127 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC--NKTTQVYRVSDGS---LVARLSDDSAANKD-------PENLNTSS------SPSSDLYIR 127 (393)
T ss_dssp CCCEEEECTTSSEEEEEC--BSCEEEEETTTCC---EEEEECC------------------------------CCCCBEE
T ss_pred EEEEEEECCCCCEEEEEc--CCcEEEEEecCCC---EEEEecCccccccc-------cccccccc------cCCCceeEE
Confidence 467899999999998764 5799999997632 22222111000000 00000000 000012367
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|||++|+++++ ++ .+.++++.. .+.+.. ..+ .......++|+|||++
T Consensus 128 ~v~~s~dg~~l~s~~~---------------d~-~i~iwd~~~---~~~~~~-----~~~----h~~~v~~~~~~p~~~~ 179 (393)
T 1erj_A 128 SVCFSPDGKFLATGAE---------------DR-LIRIWDIEN---RKIVMI-----LQG----HEQDIYSLDYFPSGDK 179 (393)
T ss_dssp EEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEE-----ECC----CSSCEEEEEECTTSSE
T ss_pred EEEECCCCCEEEEEcC---------------CC-eEEEEECCC---CcEEEE-----Ecc----CCCCEEEEEEcCCCCE
Confidence 8999999999998765 22 333344322 111111 011 1245778999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc-CCCEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRIY 272 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP-DG~~L~ 272 (290)
|+++. .+++|.+||+.. ...+..+.... ....++|+| ||++|+
T Consensus 180 l~s~s-~d~~v~iwd~~~---~~~~~~~~~~~--------------------------------~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 180 LVSGS-GDRTVRIWDLRT---GQCSLTLSIED--------------------------------GVTTVAVSPGDGKYIA 223 (393)
T ss_dssp EEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CEEEEEECSTTCCEEE
T ss_pred EEEec-CCCcEEEEECCC---CeeEEEEEcCC--------------------------------CcEEEEEECCCCCEEE
Confidence 99888 689999999853 23333322211 467899999 899988
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
+++. ...-||
T Consensus 224 ~~s~d~~v~iwd 235 (393)
T 1erj_A 224 AGSLDRAVRVWD 235 (393)
T ss_dssp EEETTSCEEEEE
T ss_pred EEcCCCcEEEEE
Confidence 8854 444454
No 85
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.18 E-value=2.5e-09 Score=95.16 Aligned_cols=146 Identities=12% Similarity=0.165 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++++|||++|++++. ++.|++||+... +.+..+... .....
T Consensus 67 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~---~~~~~~~~~-------------------------------~~~v~ 111 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD-DKTLKIWDVSSG---KCLKTLKGH-------------------------------SNYVF 111 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-TSEEEEEETTTC---CEEEEEECC-------------------------------SSCEE
T ss_pred ceEEEEEcCCCCEEEEECC-CCEEEEEECCCC---cEEEEEcCC-------------------------------CCCEE
Confidence 5789999999999998875 889999999753 233222111 13567
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|++++|++.+. ++ .+.+++... .+.+..+. . .......++++|||++
T Consensus 112 ~~~~~~~~~~l~s~~~---------------d~-~i~iwd~~~---~~~~~~~~-----~----~~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSF---------------DE-SVRIWDVKT---GKCLKTLP-----A----HSDPVSAVHFNRDGSL 163 (312)
T ss_dssp EEEECSSSSEEEEEET---------------TS-CEEEEETTT---CCEEEEEC-----C----CSSCEEEEEECTTSSE
T ss_pred EEEEcCCCCEEEEEeC---------------CC-cEEEEECCC---CEEEEEec-----C----CCCcEEEEEEcCCCCE
Confidence 8999999999998765 22 333344321 11111111 0 1234678999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .++.|.+||+.. .+.+..+.... ......++|+|+|++|++
T Consensus 164 l~~~~-~d~~i~~wd~~~---~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 164 IVSSS-YDGLCRIWDTAS---GQCLKTLIDDD------------------------------NPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEEE-TTSCEEEEETTT---CCEEEEECCSS------------------------------CCCEEEEEECTTSSEEEE
T ss_pred EEEEe-CCCcEEEEECCC---CceeeEEeccC------------------------------CCceEEEEECCCCCEEEE
Confidence 99888 688999999854 23333222111 013567999999999999
Q ss_pred EcC
Q psy11412 274 SSS 276 (290)
Q Consensus 274 an~ 276 (290)
++.
T Consensus 210 ~~~ 212 (312)
T 4ery_A 210 ATL 212 (312)
T ss_dssp EET
T ss_pred EcC
Confidence 864
No 86
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.18 E-value=1.5e-09 Score=97.05 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...+..++|+|||++|++++. +|.|++||+... +.+... ++ ...
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~---~~~~~~--~~------------------------------~~~ 129 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASC-DKTAKMWDLSSN---QAIQIA--QH------------------------------DAP 129 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEE--EC------------------------------SSC
T ss_pred cCCEEEEEECcCCCEEEEEcC-CCcEEEEEcCCC---Cceeec--cc------------------------------cCc
Confidence 346789999999999998875 889999999752 222211 10 145
Q ss_pred ceEEEE--ccCCCEEEEEcC
Q psy11412 112 SQMFQL--SLDGKRIYVSSS 129 (290)
Q Consensus 112 Pr~vaf--sPdG~~lYv~ne 129 (290)
...++| +|++++|++++.
T Consensus 130 v~~~~~~~~~~~~~l~~~~~ 149 (368)
T 3mmy_A 130 VKTIHWIKAPNYSCVMTGSW 149 (368)
T ss_dssp EEEEEEEECSSCEEEEEEET
T ss_pred eEEEEEEeCCCCCEEEEccC
Confidence 778888 999998888765
No 87
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.18 E-value=2.7e-10 Score=104.98 Aligned_cols=165 Identities=13% Similarity=0.005 Sum_probs=95.6
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
-++.|+..++..... ..-...+..++|+|++..+++++..+++|++||+.... ....+...
T Consensus 151 i~iwd~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~-------------- 211 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK---PASQIGCS-------------- 211 (344)
T ss_dssp EEEEETTTTEEEEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS---CEEECC----------------
T ss_pred EEEEECCCCcEEEEE--cCcCCceEEEEecCCCCCceeeeccccccccccccccc---eeeeeecc--------------
Confidence 355666665544432 01134678999999997655555568999999997532 22221111
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCE-EEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR-IYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~-lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
..+..+..++|+|++.. |++.++ + +.+.++|... .+.+..+.
T Consensus 212 ---------------~~~~~~~~~~~~p~~~~~l~sg~~---------------d-g~v~~wd~~~---~~~~~~~~--- 254 (344)
T 4gqb_B 212 ---------------APGYLPTSLAWHPQQSEVFVFGDE---------------N-GTVSLVDTKS---TSCVLSSA--- 254 (344)
T ss_dssp -----------------CCCEEEEEECSSCTTEEEEEET---------------T-SEEEEEESCC-----CCEEEE---
T ss_pred ---------------eeeccceeeeecCCCCcceEEecc---------------C-CcEEEEECCC---CcEEEEEc---
Confidence 00235678999997654 444433 2 2344444322 22222110
Q ss_pred cCccccCCCCceeEEEEccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412 171 LGSWKYPARSMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI 249 (290)
Q Consensus 171 ~~~~~~~~~~~~~~i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~ 249 (290)
+ .......|+|||||+ +|+++. .+++|.+||+.. .+.+. . .|.
T Consensus 255 --~----h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~---~~~~~-~-~~H------------------------ 298 (344)
T 4gqb_B 255 --V----HSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSL---SELFR-S-QAH------------------------ 298 (344)
T ss_dssp --C----CSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTC---CEEEE-E-CCC------------------------
T ss_pred --C----CCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCC---CcEEE-E-cCC------------------------
Confidence 1 124578899999995 566555 689999999853 23222 1 121
Q ss_pred eecccccCCcceEEEccCCCEEEEE
Q psy11412 250 IKGRRFTGSSQMFQLSLDGKRIYVS 274 (290)
Q Consensus 250 ~~~~~~~~~P~~~a~sPDG~~L~Va 274 (290)
.+..+.++|+|||++|+++
T Consensus 299 ------~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 299 ------RDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp ------SSCEEEEEECSSSTTEEEE
T ss_pred ------CCCEEEEEEeCCCCeEEEE
Confidence 1257899999999877654
No 88
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.18 E-value=7.4e-10 Score=106.56 Aligned_cols=150 Identities=15% Similarity=0.204 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++|+|||++|++++. ++.|++||... +.+..+. ++ ....
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~-d~~v~~~~~~~----~~~~~~~-~~------------------------------~~~v 429 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASD-DKTVKLWNRNG----QLLQTLT-GH------------------------------SSSV 429 (577)
T ss_dssp SCEEEEEECTTSSCEEEEET-TSEEEEECTTC----CEEEEEE-CC------------------------------SSCE
T ss_pred CCeEEEEECCCCCEEEEEeC-CCEEEEEeCCC----CEEEEec-CC------------------------------CCCe
Confidence 45789999999999988875 78999999632 2232221 11 1456
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+||+++|++++. ++ .+..++.. .+.+..+. ........++|||||+
T Consensus 430 ~~~~~s~d~~~l~~~~~---------------d~-~v~~w~~~----~~~~~~~~---------~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASD---------------DK-TVKLWNRN----GQLLQTLT---------GHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-EEEEEETT----SCEEEEEE---------CCSSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcC---------------CC-EEEEEECC----CCEEEEEc---------CCCCCEEEEEEcCCCC
Confidence 78999999999998765 12 33333321 11111100 0124567899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .++.|.+||.. .+.+..+. +. .+....++|+|||++|+
T Consensus 481 ~las~~-~d~~i~iw~~~----~~~~~~~~-~h------------------------------~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 481 TIASAS-DDKTVKLWNRN----GQLLQTLT-GH------------------------------SSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEEEEE-TTSEEEEEETT----SCEEEEEE-CC------------------------------SSCEEEEEECTTSSCEE
T ss_pred EEEEEe-CCCEEEEEcCC----CCEEEEEe-CC------------------------------CCCEEEEEEcCCCCEEE
Confidence 999888 68899999963 23333332 21 12478899999999999
Q ss_pred EEcC--CCCCCCc
Q psy11412 273 VSSS--LFSPWDK 283 (290)
Q Consensus 273 Van~--~~~~~~~ 283 (290)
++.. ...-||.
T Consensus 525 s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 525 SASDDKTVKLWNR 537 (577)
T ss_dssp EEETTSEEEEECT
T ss_pred EEECcCEEEEEeC
Confidence 9865 5566764
No 89
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.18 E-value=9.4e-10 Score=103.01 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|++++|++++. +|+|.+||+..... ...+. ++ .....
T Consensus 110 ~V~~~~~~p~~~~l~s~s~-Dg~i~vwd~~~~~~---~~~l~-~h------------------------------~~~V~ 154 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE-DATIKVWDYETGDF---ERTLK-GH------------------------------TDSVQ 154 (410)
T ss_dssp CEEEEEECSSSSEEEEEES-SSCEEEEETTTCCC---CEEEC-CC------------------------------SSCEE
T ss_pred cEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcE---EEEEe-cc------------------------------CCcEE
Confidence 5678999999999988775 89999999976322 22111 11 14578
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|+|++|++++. ++ .+.+|+... ...+..+. + .......++|+|||++
T Consensus 155 ~v~~~~~~~~l~sgs~---------------D~-~i~iwd~~~---~~~~~~~~-----~----h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 155 DISFDHSGKLLASCSA---------------DM-TIKLWDFQG---FECIRTMH-----G----HDHNVSSVSIMPNGDH 206 (410)
T ss_dssp EEEECTTSSEEEEEET---------------TS-CCCEEETTS---SCEEECCC-----C----CSSCEEEEEECSSSSE
T ss_pred EEEEcCCCCEEEEEeC---------------CC-eEEEEeCCC---CceeEEEc-----C----CCCCEEEEEEeCCCCE
Confidence 8999999999988765 22 333343321 11122111 1 1235778999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .+++|.+||+.. ...+..+. +. ....+.+.++|||++|++
T Consensus 207 l~s~s-~D~~i~~wd~~~---~~~~~~~~-~h------------------------------~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 207 IVSAS-RDKTIKMWEVQT---GYCVKTFT-GH------------------------------REWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp EEEEE-TTSEEEEEETTT---CCEEEEEE-CC------------------------------SSCEEEEEECTTSSEEEE
T ss_pred EEEEe-CCCeEEEEECCC---CcEEEEEe-CC------------------------------CccEEEEEECCCCCEEEE
Confidence 99888 689999999954 23333322 22 025688999999999998
Q ss_pred EcC--CCCCCC
Q psy11412 274 SSS--LFSPWD 282 (290)
Q Consensus 274 an~--~~~~~~ 282 (290)
+.. ...-|+
T Consensus 252 ~s~D~~v~vwd 262 (410)
T 1vyh_C 252 CSNDQTVRVWV 262 (410)
T ss_dssp EETTSCEEEEE
T ss_pred EcCCCeEEEEE
Confidence 864 455554
No 90
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.17 E-value=8.8e-10 Score=103.82 Aligned_cols=166 Identities=14% Similarity=0.020 Sum_probs=98.1
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV 88 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v 88 (290)
.-.+.|+..++..... .....+.+++|||||++|+.+...+ ..|.+||+... ....+ .++
T Consensus 204 ~i~~~d~~tg~~~~l~---~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~~~l----~~~---------- 265 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQV----TDG---------- 265 (415)
T ss_dssp EEEEEETTTCCEEEEE---CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEEC----CCC----------
T ss_pred EEEEEECCCCcEEEee---cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CEEeC----cCC----------
Confidence 4456777765544322 2345678999999999998654333 45999998652 22111 110
Q ss_pred ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412 89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~ 168 (290)
......++|||||++|++++...+.. .+..++... .. ...
T Consensus 266 --------------------~~~~~~~~~spdg~~l~~~s~~~g~~-------------~i~~~d~~~---~~-~~~--- 305 (415)
T 2hqs_A 266 --------------------RSNNTEPTWFPDSQNLAFTSDQAGRP-------------QVYKVNING---GA-PQR--- 305 (415)
T ss_dssp --------------------SSCEEEEEECTTSSEEEEEECTTSSC-------------EEEEEETTS---SC-CEE---
T ss_pred --------------------CCcccceEECCCCCEEEEEECCCCCc-------------EEEEEECCC---CC-EEE---
Confidence 13567899999999998876421111 111122111 00 110
Q ss_pred cccCccccCCCCceeEEEEccCCCEEEEEeCC--CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412 169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD 246 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~--~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~ 246 (290)
+. ..+.....++|||||++|+++... ...|.+||+.. +..+ .+. +.
T Consensus 306 --l~----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~~---~l~-~~--------------------- 353 (415)
T 2hqs_A 306 --IT----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGVQ---VLS-ST--------------------- 353 (415)
T ss_dssp --CC----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCEE---ECC-CS---------------------
T ss_pred --Ee----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCEE---Eec-CC---------------------
Confidence 00 012346679999999999987754 35899999853 2211 111 11
Q ss_pred cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.....++|+|||++|+.++.
T Consensus 354 ----------~~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 354 ----------FLDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp ----------SSCEEEEECTTSSEEEEEEE
T ss_pred ----------CCcCCeEEcCCCCEEEEEEc
Confidence 14678999999999888754
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.6e-09 Score=95.56 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=109.3
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC-----CeEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH-----GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 86 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~-----g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~ 86 (290)
-++.|+...+..... .....+..++++|+|++|+++.. + +.|.+||+........+...... .+
T Consensus 98 i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------~~ 166 (369)
T 3zwl_B 98 IKLWDVSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILD-NVMKNPGSINIYEIERDSATHELTKVSEE-------PI 166 (369)
T ss_dssp EEEEETTTCCEEEEE---ECSSCEEEEEECTTSSEEEEEEC-CBTTBCCEEEEEEEEECTTTCCEEEECSS-------CS
T ss_pred EEEEECCCCcEEEEe---ecCCCeEEEEEccCCCEEEEecC-CccCCCCEEEEEEecCCccceeecccccc-------ee
Confidence 345566665554443 34557889999999999998875 5 89999999754332222111000 00
Q ss_pred EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc
Q psy11412 87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM 166 (290)
Q Consensus 87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 166 (290)
.. ............++|+|+|++|++++. ++ .+..++.... ...+..+
T Consensus 167 ~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg-~i~i~d~~~~--~~~~~~~ 214 (369)
T 3zwl_B 167 HK--------------IITHEGLDAATVAGWSTKGKYIIAGHK---------------DG-KISKYDVSNN--YEYVDSI 214 (369)
T ss_dssp EE--------------EECCTTCCCEEEEEECGGGCEEEEEET---------------TS-EEEEEETTTT--TEEEEEE
T ss_pred ee--------------ccCCcCccceeEEEEcCCCCEEEEEcC---------------CC-EEEEEECCCC--cEeEEEE
Confidence 00 001111136788999999999998765 12 3333333210 0111110
Q ss_pred CccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412 167 PLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD 246 (290)
Q Consensus 167 p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~ 246 (290)
. ........++|+|||++|+++. .++.|.+||+.. .+.+..+....
T Consensus 215 ~---------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~---~~~~~~~~~~~--------------------- 260 (369)
T 3zwl_B 215 D---------LHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVST---LQVLKKYETDC--------------------- 260 (369)
T ss_dssp E---------CCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT---CCEEEEEECSS---------------------
T ss_pred e---------cCCCceeEEEECCCCCEEEEec-CCceEEEEECCC---CceeeeecCCC---------------------
Confidence 0 0123567899999999999888 688999999854 33444443222
Q ss_pred cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
....++|+|+|++|++++.
T Consensus 261 -----------~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 261 -----------PLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp -----------CEEEEEECSSSSEEEEEEC
T ss_pred -----------CceeEEecCCCceEEEeec
Confidence 5688999999999999875
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.17 E-value=2.3e-10 Score=107.59 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++++|++..+++++..+|.|++||+......+.+..+... ...+
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------------------------~~~v 280 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-------------------------------TAEV 280 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-------------------------------SSCE
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-------------------------------CCCe
Confidence 468899999954444445556899999999764322222222111 2578
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++++|+|+++++++++... +.+.+++.... ...+..+. . ....+..|+++|+|+
T Consensus 281 ~~i~~~p~~~~~l~tg~~d---------------g~v~vwd~~~~--~~~~~~~~-----~----h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSAD---------------KTVALWDLRNL--KLKLHSFE-----S----HKDEIFQVQWSPHNE 334 (430)
T ss_dssp EEEEECSSCTTEEEEEETT---------------SEEEEEETTCT--TSCSEEEE-----C----CSSCEEEEEECSSCT
T ss_pred EEEEeCCCCCCEEEEEeCC---------------CeEEEEeCCCC--CCCeEEee-----c----CCCCEEEEEECCCCC
Confidence 9999999999777665522 23333433210 01111100 0 124578899999998
Q ss_pred EEEEEeCCCCcEEEEEecC
Q psy11412 193 YLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d 211 (290)
++++++..++.|.+||+..
T Consensus 335 ~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TEEEEEETTSCCEEEEGGG
T ss_pred CEEEEEeCCCcEEEEeCCC
Confidence 7777776899999999964
No 93
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.16 E-value=1.5e-09 Score=98.72 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=46.5
Q ss_pred CceeEEEEccCCCEEEEEeC-CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412 180 SMVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 258 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r-~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (290)
..|.+|+|+|++..||+++. .++.|.+||. + ...+..+...+. . ..+.+ + . -..
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~---g~~~~~~~~~g~-------------~--~~~~~----~-~-~~~ 197 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S---GKFVTQWGEESS-------------G--SSPRP----G-Q-FSV 197 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSSCCEEEEECT-T---SCEEEEECEECC-------------S--SSCCT----T-E-ESC
T ss_pred CCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C---CCEEEEeccCCC-------------C--CCCCC----c-c-cCC
Confidence 36899999996556799984 7899999984 2 233343322221 0 00000 0 0 026
Q ss_pred cceEEEccCCCEEEEEcC
Q psy11412 259 SQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 259 P~~~a~sPDG~~L~Van~ 276 (290)
|++++|+||+..|||++.
T Consensus 198 p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADR 215 (329)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred CcEEEEECCCCEEEEEEC
Confidence 999999999999999975
No 94
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.16 E-value=1.3e-09 Score=96.01 Aligned_cols=148 Identities=8% Similarity=0.027 Sum_probs=92.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.+++++|+|+ ||+++..++.|.+|+.. .+.+..+...+ ....|
T Consensus 121 ~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~~-----------------------------~~~~p 166 (286)
T 1q7f_A 121 QHPRGVTVDNKGR-IIVVECKVMRVIIFDQN----GNVLHKFGCSK-----------------------------HLEFP 166 (286)
T ss_dssp SCEEEEEECTTSC-EEEEETTTTEEEEECTT----SCEEEEEECTT-----------------------------TCSSE
T ss_pred CCceEEEEeCCCC-EEEEECCCCEEEEEcCC----CCEEEEeCCCC-----------------------------ccCCc
Confidence 3799999999997 88888878999999853 12222221100 01479
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++|+++|+|+ +|+++...+. +..++.. .+.+..+.. .+ ....|.+|+++|||+
T Consensus 167 ~~i~~~~~g~-l~v~~~~~~~---------------i~~~~~~----g~~~~~~~~---~g----~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 167 NGVVVNDKQE-IFISDNRAHC---------------VKVFNYE----GQYLRQIGG---EG----ITNYPIGVGINSNGE 219 (286)
T ss_dssp EEEEECSSSE-EEEEEGGGTE---------------EEEEETT----CCEEEEESC---TT----TSCSEEEEEECTTCC
T ss_pred EEEEECCCCC-EEEEECCCCE---------------EEEEcCC----CCEEEEEcc---CC----ccCCCcEEEECCCCC
Confidence 9999999997 8887652222 2212210 001111000 00 014678999999995
Q ss_pred EEEEEeCCCC-cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 193 YLYTSNWMHG-DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 193 ~Lyvs~r~~~-~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
||+++..++ .|.+||.. .+.+..+..+.. ...|..++++|||+ |
T Consensus 220 -l~v~~~~~~~~i~~~~~~----g~~~~~~~~~~~-----------------------------~~~~~~i~~~~~g~-l 264 (286)
T 1q7f_A 220 -ILIADNHNNFNLTIFTQD----GQLISALESKVK-----------------------------HAQCFDVALMDDGS-V 264 (286)
T ss_dssp -EEEEECSSSCEEEEECTT----SCEEEEEEESSC-----------------------------CSCEEEEEEETTTE-E
T ss_pred -EEEEeCCCCEEEEEECCC----CCEEEEEcccCC-----------------------------CCcceeEEECCCCc-E
Confidence 688887776 99999852 234455544321 01588999999996 7
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
||++.
T Consensus 265 ~vs~~ 269 (286)
T 1q7f_A 265 VLASK 269 (286)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 77753
No 95
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.16 E-value=3.7e-10 Score=102.68 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCEEEEEeC-CCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLDDRYLYTSNW-MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~-~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.|++|+++|++..||+++. ..+.|.+|+. + ...+..+...+. . ..+.+. .-..|
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~---g~~~~~~~~~g~---~------------~~~~~~------~~~~p 198 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S---GKFVTQWGEESS---G------------SSPRPG------QFSVP 198 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECT-T---SCEEEEECEECC---S------------SSCCTT------EESCE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C---CCEEEEeccCCC---C------------CCCCCc------ccCCC
Confidence 6999999997677889984 7899999983 3 223322211110 0 000000 00469
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc---
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL--- 189 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp--- 189 (290)
++|+|+|++..|||++...+.+.+ ++..+ .+.+..+... ..+..+.+++++|
T Consensus 199 ~gia~d~~~g~l~v~d~~~~~I~~---------------~~~~~---G~~~~~~~~~-------~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRENGRIQC---------------FKTDT---KEFVREIKHA-------SFGRNVFAISYIPGFL 253 (329)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---------------EETTT---CCEEEEECCT-------TTTTCEEEEEEETTEE
T ss_pred cEEEEECCCCEEEEEECCCCEEEE---------------EECCC---CcEEEEEecc-------ccCCCcceeeecCCEE
Confidence 999999998899999863332222 22110 0111111000 0123567788888
Q ss_pred ---CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412 190 ---DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL 266 (290)
Q Consensus 190 ---DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP 266 (290)
||+ +|+++..+++|.+||..+ .+.+..+..+.. ....|++++|+|
T Consensus 254 ~~~~g~-~~v~~~~~~~v~~~~~~~---g~~~~~~~~~~~----------------------------~~~~p~~ia~~~ 301 (329)
T 3fvz_A 254 FAVNGK-PYFGDQEPVQGFVMNFSS---GEIIDVFKPVRK----------------------------HFDMPHDIVASE 301 (329)
T ss_dssp EEEECC-CCTTCSCCCCEEEEETTT---CCEEEEECCSSS----------------------------CCSSEEEEEECT
T ss_pred EEeCCC-EEeccCCCcEEEEEEcCC---CeEEEEEcCCCC----------------------------ccCCeeEEEECC
Confidence 665 555665667899998753 344444422110 012699999999
Q ss_pred CCCEEEEEcC
Q psy11412 267 DGKRIYVSSS 276 (290)
Q Consensus 267 DG~~L~Van~ 276 (290)
|| .|||++.
T Consensus 302 dG-~lyvad~ 310 (329)
T 3fvz_A 302 DG-TVYIGDA 310 (329)
T ss_dssp TS-EEEEEES
T ss_pred CC-CEEEEEC
Confidence 99 8999976
No 96
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.16 E-value=2.1e-09 Score=96.95 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=109.3
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCCeEEEEEcCCCCCc--eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 34 MVTDILISLDD-RYLYTSNWMHGDIRQYDIRDTAHP--VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 34 ~p~~va~SpDG-r~Lyva~~~~g~V~v~dv~d~~~~--~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
.+..++++|++ ++|+++. .+++|++|++...... ..+..+ .++ ..
T Consensus 19 ~V~~l~~~~~~~~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~-~~h------------------------------~~ 66 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSAS-RDKTLISWKLTGDDQKFGVPVRSF-KGH------------------------------SH 66 (319)
T ss_dssp CEEEEEECSSCTTEEEEEE-TTSEEEEEEEEEETTEEEEEEEEE-ECC------------------------------SS
T ss_pred eEEEEEccCCCccEEEEec-CCccEEEecCCCCCccccccceEE-eCC------------------------------cc
Confidence 57889999976 7777666 4899999998642211 111111 111 14
Q ss_pred CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
....++|+|||++|+.++. + +.+.++++.+ .+.+..+ .+ ....+..++|+|+
T Consensus 67 ~v~~~~~s~dg~~l~s~s~---------------D-~~v~~wd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~ 118 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW---------------D-KTLRLWDVAT---GETYQRF-----VG----HKSDVMSVDIDKK 118 (319)
T ss_dssp CEEEEEECTTSSEEEEEET---------------T-SEEEEEETTT---TEEEEEE-----EC----CSSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEeC---------------C-CEEEEEECCC---CCeeEEE-----cc----CCCcEEEEEEcCC
Confidence 5778999999999998764 2 2444444422 1111110 01 1245778999999
Q ss_pred CCEEEEEeCCCCcEEEEEecCCC------CceEeeEE---eeC-----c-ee---cCCCceEEecCCCCCCCCCcceeec
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTA------HPVLVGQI---FLG-----G-KI---QSDSGVTVIDDPELDKQPDPVIIKG 252 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~------~~~~v~~i---~~G-----g-~~---~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (290)
|++|+++. .+++|.+||+.... +...+..+ +.+ + .+ ..|++|.+|+...... ...+.|
T Consensus 119 ~~~l~s~s-~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~ 194 (319)
T 3frx_A 119 ASMIISGS-RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---EADFIG 194 (319)
T ss_dssp SCEEEEEE-TTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---EEEECC
T ss_pred CCEEEEEe-CCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---heeecC
Confidence 99999888 68999999985310 00001111 100 0 11 4678899998654210 011122
Q ss_pred ccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
. .+....++|+|||++|+++.. .+.-||
T Consensus 195 h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 195 H--NSNINTLTASPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp C--CSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred C--CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 2 134789999999999999865 455565
No 97
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.15 E-value=1.6e-09 Score=100.20 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=96.7
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.+..+++++ ++.+|++++. +++|++||+...... +..+ .++ ....
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~-D~~v~~wd~~~~~~~--~~~~-~~h------------------------------~~~v 252 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSC-DTTVRLWDLRITSRA--VRTY-HGH------------------------------EGDI 252 (380)
T ss_dssp CEEEEEECSSSCCEEEEEET-TSCEEEEETTTTCCC--CEEE-CCC------------------------------SSCC
T ss_pred CeEEEEeecCCCCEEEEEEC-CCeEEEEECCCCCcc--eEEE-CCc------------------------------CCCe
Confidence 567888876 7888877664 899999999643221 1111 111 1457
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+|||++|+.++. ++ .+.+|+... ...+.......... .........++|||||+
T Consensus 253 ~~v~~~p~~~~l~s~s~---------------D~-~i~lwd~~~---~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 253 NSVKFFPDGQRFGTGSD---------------DG-TCRLFDMRT---GHQLQVYNREPDRN--DNELPIVTSVAFSISGR 311 (380)
T ss_dssp CEEEECTTSSEEEEECS---------------SS-CEEEEETTT---TEEEEEECCCCSSS--CCSSCSCSEEEECSSSS
T ss_pred EEEEEecCCCeEEEEcC---------------CC-eEEEEECCC---CcEEEEeccccccc--ccccCceEEEEECCCCC
Confidence 88999999999988765 22 333333321 11111100000000 00012356799999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .++.|.+||+... +.+..+..-. ..| .+....++|+|||++|+
T Consensus 312 ~l~~g~-~dg~i~vwd~~~~---~~~~~~~~~~------------------~~h---------~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 312 LLFAGY-SNGDCYVWDTLLA---EMVLNLGTLQ------------------NSH---------EGRISCLGLSSDGSALC 360 (380)
T ss_dssp EEEEEC-TTSCEEEEETTTC---CEEEEECCSC------------------SSC---------CCCCCEEEECSSSSEEE
T ss_pred EEEEEE-CCCCEEEEECCCC---ceEEEEeccc------------------CCC---------CCceEEEEECCCCCEEE
Confidence 999887 6899999998532 2222221100 000 12478899999999999
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
+++. ...-|+
T Consensus 361 sgs~D~~i~iW~ 372 (380)
T 3iz6_a 361 TGSWDKNLKIWA 372 (380)
T ss_dssp EECTTSCEEEEE
T ss_pred EeeCCCCEEEEe
Confidence 9864 555565
No 98
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.15 E-value=6e-10 Score=111.08 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCC-----eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHG-----DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR 106 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g-----~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 106 (290)
+..+.+++|||||++|+.++..++ +|.+||+... ....+. . +....+.+...........+.. .
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-------~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLV--D-SKVVLPGTETLSDEEKARRERQ-------R 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEE--C-GGGTC-------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEcc--c-hhhcccccccccchhhhhhhhh-------h
Confidence 446889999999999998886455 8999999753 222221 1 1100000000000000000000 0
Q ss_pred ccC-CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc--cccccCccccCccccCCCCcee
Q psy11412 107 RFT-GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN--EMRSMPLSSLGSWKYPARSMVT 183 (290)
Q Consensus 107 ~~g-~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~--~i~~~p~~~~~~~~~~~~~~~~ 183 (290)
..+ .....++|||||++|++++. + .+.++++.. .. .+..+. .....+.
T Consensus 105 ~~~~~~v~~~~~SpDg~~l~~~~~--~---------------~i~~~d~~~---~~~~~~~~l~---------~~~~~~~ 155 (741)
T 2ecf_A 105 IAAMTGIVDYQWSPDAQRLLFPLG--G---------------ELYLYDLKQ---EGKAAVRQLT---------HGEGFAT 155 (741)
T ss_dssp --CCEESCCCEECTTSSEEEEEET--T---------------EEEEEESSS---CSTTSCCBCC---------CSSSCEE
T ss_pred hccccCcceeEECCCCCEEEEEeC--C---------------cEEEEECCC---CCcceEEEcc---------cCCcccc
Confidence 000 13567999999999998764 1 222233221 10 111000 0123567
Q ss_pred EEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 184 DILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 184 ~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
.++|||||++|+.+. ++.|.+||+..
T Consensus 156 ~~~~SPDG~~la~~~--~~~i~~~d~~~ 181 (741)
T 2ecf_A 156 DAKLSPKGGFVSFIR--GRNLWVIDLAS 181 (741)
T ss_dssp EEEECTTSSEEEEEE--TTEEEEEETTT
T ss_pred cccCCCCCCEEEEEe--CCcEEEEecCC
Confidence 899999999888765 35899999853
No 99
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.1e-09 Score=97.39 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC----CceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA----HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~----~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
.+..++|+|||++|+++.. +++|++|++.... ....+..+ .++ .
T Consensus 60 ~v~~v~~sp~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~~-~~h------------------------------~ 107 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSF-DSTVSIWAKEESADRTFEMDLLAII-EGH------------------------------E 107 (330)
T ss_dssp CEEEEEECTTSSEEEEEET-TSCEEEEEC-------CCCEEEEEE-C---------------------------------
T ss_pred CEEEEEECCCCCEEEEEeC-CCcEEEEEcccCcCccccceeEEEE-cCC------------------------------C
Confidence 5789999999999988875 8999999985421 11222211 110 1
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee-ecccccccCccccCccccCCCCceeEEEEc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-QRNEMRSMPLSSLGSWKYPARSMVTDILIS 188 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S 188 (290)
.....++|+|+|++|+.++. ++ .+.+++..... ....+.. ..+ .......++|+
T Consensus 108 ~~V~~v~~sp~g~~las~s~---------------D~-~v~iwd~~~~~~~~~~~~~-----~~~----h~~~v~~v~~~ 162 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSR---------------DK-SVWIWETDESGEEYECISV-----LQE----HSQDVKHVIWH 162 (330)
T ss_dssp -CEEEEEECTTSCEEEEEET---------------TS-CEEEEECCTTCCCCEEEEE-----ECC----CSSCEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeC---------------CC-EEEEEeccCCCCCeEEEEE-----ecc----CCCceEEEEEC
Confidence 45788999999999998765 22 33334431100 0000110 001 12457789999
Q ss_pred cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccC-
Q psy11412 189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD- 267 (290)
Q Consensus 189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPD- 267 (290)
|||++|+++. .+++|.+||+... ..+.+..+. |. .+....++|+|+
T Consensus 163 p~~~~l~s~s-~D~~i~iW~~~~~-~~~~~~~~~-~h------------------------------~~~v~~~~~~~~~ 209 (330)
T 2hes_X 163 PSEALLASSS-YDDTVRIWKDYDD-DWECVAVLN-GH------------------------------EGTVWSSDFDKTE 209 (330)
T ss_dssp SSSSEEEEEE-TTSCEEEEEEETT-EEEEEEEEC-CC------------------------------SSCEEEEEECCSS
T ss_pred CCCCEEEEEc-CCCeEEEEECCCC-CeeEEEEcc-CC------------------------------CCcEEEEEecCCC
Confidence 9999999888 6899999998531 112222221 11 124678999998
Q ss_pred -CCEEEEEcC--CCCCCC
Q psy11412 268 -GKRIYVSSS--LFSPWD 282 (290)
Q Consensus 268 -G~~L~Van~--~~~~~~ 282 (290)
+.+|+.+.. ...-|+
T Consensus 210 ~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp SSCEEEEEETTSCEEEEE
T ss_pred CeeEEEEEeCCCeEEEEE
Confidence 778877754 555564
No 100
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.15 E-value=2.4e-09 Score=97.29 Aligned_cols=176 Identities=15% Similarity=0.229 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+||+++|+++.. +++|++||+.+. +.+..+. ++ .....
T Consensus 78 ~V~~~~~~~~~~~l~s~s~-D~~v~lwd~~~~---~~~~~~~-~h------------------------------~~~v~ 122 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSW-DKTLRLWDLRTG---TTYKRFV-GH------------------------------QSEVY 122 (343)
T ss_dssp CEEEEEECSSTTEEEEEET-TSEEEEEETTSS---CEEEEEE-CC------------------------------CSCEE
T ss_pred ceEEEEECCCCCEEEEEcC-CCcEEEEECCCC---cEEEEEc-CC------------------------------CCcEE
Confidence 5778999999999988775 899999999753 2222221 11 14578
Q ss_pred EEEEccCCCEEEEEcCCC--CCcceee-----cccccCCCceeecceeeeeeecc-----------ccccc-CccccCcc
Q psy11412 114 MFQLSLDGKRIYVSSSLF--SPWDKEI-----YPDLVKTDAAFGSDEIMEFIQRN-----------EMRSM-PLSSLGSW 174 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~--~~~d~~~-----~~~~~~~g~~~~~~~~~~~~~~~-----------~i~~~-p~~~~~~~ 174 (290)
.++|+|||++|+.++... ..|+... ..........+ ....+.... .+.+. ..+.+..|
T Consensus 123 ~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV---SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp EEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE---EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred EEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee---eeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 899999999998876521 1232210 00000000000 000000000 00000 00001111
Q ss_pred c--------cC-CCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCC
Q psy11412 175 K--------YP-ARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP 245 (290)
Q Consensus 175 ~--------~~-~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~ 245 (290)
. +. .......++|||||++|+++. .++.|.+||+..... ....+..+.
T Consensus 200 d~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg~v~iwd~~~~~~--~~~~~~~~~-------------------- 256 (343)
T 2xzm_R 200 NTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNLTY--PQREFDAGS-------------------- 256 (343)
T ss_dssp ETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTCEEEEEESSCCSS--CSEEEECSS--------------------
T ss_pred cCCCceeEEEcCccccceEEEECCCCCEEEEEc-CCCeEEEEECCCCcc--cceeecCCC--------------------
Confidence 1 00 123577899999999999888 689999999843221 111121222
Q ss_pred CcceeecccccCCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412 246 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-LFSPWD 282 (290)
Q Consensus 246 ~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~-~~~~~~ 282 (290)
....++|+|+|++|+++.. ...-|+
T Consensus 257 ------------~v~~v~~sp~~~~la~~~d~~v~iw~ 282 (343)
T 2xzm_R 257 ------------TINQIAFNPKLQWVAVGTDQGVKIFN 282 (343)
T ss_dssp ------------CEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred ------------cEEEEEECCCCCEEEEECCCCEEEEE
Confidence 4688999999999988754 334443
No 101
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.14 E-value=1.4e-09 Score=98.00 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=99.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCe--EEEEEcCCCCCceeeeEEeec-----------cc-c---cCCCceEEecCCC
Q psy11412 31 VPAMVTDILISLDDRYLYTSNWMHGD--IRQYDIRDTAHPVLVGQIFLG-----------GK-I---QSDSGVTVIDDPE 93 (290)
Q Consensus 31 v~~~p~~va~SpDGr~Lyva~~~~g~--V~v~dv~d~~~~~~~~~i~~g-----------~~-~---~~~~~~~v~~~~~ 93 (290)
++..|+++++++||+ ||+++.+.+. |..++..+ +..+.+..+... +. + ...+.+++++...
T Consensus 70 ~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 70 VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCC-CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 456899999999999 7889865434 66666544 233322211000 00 0 0123444444221
Q ss_pred C--cCC--CCccee-eccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412 94 L--DKQ--PDPVII-KGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL 168 (290)
Q Consensus 94 ~--~~~--~~~~~~-~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~ 168 (290)
. ... ...... .....-..|.+| +|||++||+++...+.+.++.... ++ .+..... ..
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~---~g-~~~~~~~--------~~---- 209 (306)
T 2p4o_A 148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS---TD-KPGEPEI--------FV---- 209 (306)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT---TS-CBCCCEE--------EE----
T ss_pred CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC---CC-CCCccEE--------Ee----
Confidence 0 000 000000 000011467887 999999999987444333222110 01 1100000 00
Q ss_pred cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcc
Q psy11412 169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPV 248 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~ 248 (290)
....|.+|++++||+ ||++++.++.|.+||.. +....+..++.+.
T Consensus 210 ---------~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~--G~~~~~~~~~~~~----------------------- 254 (306)
T 2p4o_A 210 ---------EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD--RSTTIIAQAEQGV----------------------- 254 (306)
T ss_dssp ---------ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTT--CCEEEEECGGGTC-----------------------
T ss_pred ---------ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCC--CCEEEEeeccccc-----------------------
Confidence 012456799999996 69999999999998742 2222233333321
Q ss_pred eeecccccCCcceEEEc---cCCCEEEEEcC
Q psy11412 249 IIKGRRFTGSSQMFQLS---LDGKRIYVSSS 276 (290)
Q Consensus 249 ~~~~~~~~~~P~~~a~s---PDG~~L~Van~ 276 (290)
..|..++|+ |||++|||++.
T Consensus 255 --------~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 255 --------IGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp --------TTEEEEEECCSTTTTTEEEEEEC
T ss_pred --------CCceEEEEecccCCCCEEEEECC
Confidence 279999999 99999999987
No 102
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.14 E-value=2e-09 Score=98.74 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=93.4
Q ss_pred ceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 34 MVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 34 ~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.+..++++| +|++|++++. +|+|++||+... +.+..+... ...
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~-Dg~v~~wd~~~~---~~~~~~~~h-------------------------------~~~ 242 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGC-DKKAMVWDMRSG---QCVQAFETH-------------------------------ESD 242 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEET-TSCEEEEETTTC---CEEEEECCC-------------------------------SSC
T ss_pred CeEEEEEEeCCCCCEEEEEeC-CCeEEEEECCCC---cEEEEecCC-------------------------------CCC
Confidence 456778877 5789988775 899999999753 223222111 145
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
...++|+|+|+.|++++. ++ .+.+++... .+.+..... .. .......++|||||
T Consensus 243 v~~v~~~p~~~~l~s~s~---------------D~-~v~lwd~~~---~~~~~~~~~---~~----~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 243 VNSVRYYPSGDAFASGSD---------------DA-TCRLYDLRA---DREVAIYSK---ES----IIFGASSVDFSLSG 296 (354)
T ss_dssp EEEEEECTTSSEEEEEET---------------TS-CEEEEETTT---TEEEEEECC---TT----CCSCEEEEEECTTS
T ss_pred eEEEEEeCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEEcC---CC----cccceeEEEEeCCC
Confidence 788999999999988765 22 333333321 111111000 00 01245679999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
++|+++. .+++|.+||+.. ...+..+. |. .+....++|+|||++|
T Consensus 297 ~~l~~g~-~d~~i~vwd~~~---~~~~~~l~-~h------------------------------~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 297 RLLFAGY-NDYTINVWDVLK---GSRVSILF-GH------------------------------ENRVSTLRVSPDGTAF 341 (354)
T ss_dssp SEEEEEE-TTSCEEEEETTT---CSEEEEEC-CC------------------------------SSCEEEEEECTTSSCE
T ss_pred CEEEEEE-CCCcEEEEECCC---CceEEEEE-CC------------------------------CCcEEEEEECCCCCEE
Confidence 9999988 688999999853 22333221 22 1257889999999999
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
++++.
T Consensus 342 ~sgs~ 346 (354)
T 2pbi_B 342 CSGSW 346 (354)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 98864
No 103
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.14 E-value=3.2e-09 Score=99.98 Aligned_cols=167 Identities=17% Similarity=0.098 Sum_probs=95.9
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH--GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV 88 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~--g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v 88 (290)
.-++.|+..+...... .-...+..+++||||++|+.+.... ..|.+||+... ....+ .++
T Consensus 160 ~i~i~d~~g~~~~~l~---~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-~~~~l----~~~---------- 221 (415)
T 2hqs_A 160 ELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AVRQV----ASF---------- 221 (415)
T ss_dssp EEEEEETTSCSCEEEE---EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEEE----ECC----------
T ss_pred eEEEEcCCCCCCEEEe---CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-cEEEe----ecC----------
Confidence 4456666533322111 1134678899999999999887643 49999999753 22221 110
Q ss_pred ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412 89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~ 168 (290)
......++|||||++|+++....+.. .+..++... .+ ...
T Consensus 222 --------------------~~~~~~~~~spdg~~la~~~~~~g~~-------------~i~~~d~~~---~~-~~~--- 261 (415)
T 2hqs_A 222 --------------------PRHNGAPAFSPDGSKLAFALSKTGSL-------------NLYVMDLAS---GQ-IRQ--- 261 (415)
T ss_dssp --------------------SSCEEEEEECTTSSEEEEEECTTSSC-------------EEEEEETTT---CC-EEE---
T ss_pred --------------------CCcccCEEEcCCCCEEEEEEecCCCc-------------eEEEEECCC---CC-EEe---
Confidence 13567899999999888654321111 122222211 11 110
Q ss_pred cccCccccCCCCceeEEEEccCCCEEEEEeCCCC--cEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCC
Q psy11412 169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD 246 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~--~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~ 246 (290)
+. ........++|||||++|+++...++ .|.+||+.. +..+. +...+
T Consensus 262 --l~----~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~~~~---l~~~~--------------------- 310 (415)
T 2hqs_A 262 --VT----DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GAPQR---ITWEG--------------------- 310 (415)
T ss_dssp --CC----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCCEE---CCCSS---------------------
T ss_pred --Cc----CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CCEEE---EecCC---------------------
Confidence 00 01234677999999998887663334 677777743 12111 11111
Q ss_pred cceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 247 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 247 ~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.....++|||||++|++++.
T Consensus 311 ----------~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 311 ----------SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp ----------SEEEEEEECTTSSEEEEEEE
T ss_pred ----------CcccCeEECCCCCEEEEEEC
Confidence 14678999999999998864
No 104
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.13 E-value=8.6e-10 Score=103.70 Aligned_cols=187 Identities=14% Similarity=0.174 Sum_probs=107.0
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.+..|+|+|+ ++.|++++ .+|+|.+||+........+. ..|+ ....
T Consensus 121 ~V~~l~~~P~~~~~lasGs-~dg~i~lWd~~~~~~~~~~~--~~gH------------------------------~~~V 167 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-KGGDIMLWNFGIKDKPTFIK--GIGA------------------------------GGSI 167 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-TTSCEEEECSSCCSCCEEEC--CCSS------------------------------SCCC
T ss_pred CEEEEEEeCCCCCEEEEEe-CCCEEEEEECCCCCceeEEE--ccCC------------------------------CCCE
Confidence 4789999995 56776665 58999999997533222221 0111 1467
Q ss_pred eEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 113 QMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
..|+|+| |+++|+.++. ++ .+.+|++.. +.+...... . ........++|+|||
T Consensus 168 ~~l~f~p~~~~~l~s~s~---------------D~-~v~iwd~~~----~~~~~~~~~--~----~~~~~~~~~~~~~~~ 221 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSM---------------EG-TTRLQDFKG----NILRVFASS--D----TINIWFCSLDVSASS 221 (435)
T ss_dssp CEEEECSSCTTEEEEECS---------------SS-CEEEEETTS----CEEEEEECC--S----SCSCCCCCEEEETTT
T ss_pred EEEEEeCCCCCEEEEEeC---------------CC-EEEEeeccC----CceeEEecc--C----CCCccEEEEEECCCC
Confidence 8899998 6888887654 22 333343311 011100000 0 011234568999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCC------CceEeeEEe---eCce-e---cCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTA------HPVLVGQIF---LGGK-I---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 258 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~------~~~~v~~i~---~Gg~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (290)
++|+++. .++.|.+||+.... +...+..+. .+.. + ..|++|.+||..............+. .+.
T Consensus 222 ~~l~~g~-~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h--~~~ 298 (435)
T 4e54_B 222 RMVVTGD-NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH--RHP 298 (435)
T ss_dssp TEEEEEC-SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC--SSC
T ss_pred CEEEEEe-CCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec--ccc
Confidence 9999888 68999999985311 111122221 2221 1 46788999986553211111111111 124
Q ss_pred cceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 259 SQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 259 P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
...++|+|||++|++++. .+.-|+
T Consensus 299 v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 299 VNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp EEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred ccceeECCCCCeeEEEcCCCEEEEEE
Confidence 688999999999999865 444444
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.12 E-value=2.2e-09 Score=99.31 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=96.6
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCc----eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412 33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR 107 (290)
Q Consensus 33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~----~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 107 (290)
+.+..++|+| ++++|++++. +|+|++||+.+.... +.+..+. ++
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~-dg~v~vw~~~~~~~~~~~~~~~~~~~-~h----------------------------- 130 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSE-DCTVMVWEIPDGGLVLPLREPVITLE-GH----------------------------- 130 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEET-TSEEEEEECCTTCCSSCBCSCSEEEE-CC-----------------------------
T ss_pred CCEEEEEeCCCCCCEEEEEeC-CCeEEEEEccCCCCccccCCceEEec-CC-----------------------------
Confidence 4678999999 8999988875 899999999764211 1111111 10
Q ss_pred cCCCceEEEEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412 108 FTGSSQMFQLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL 186 (290)
Q Consensus 108 ~g~gPr~vafsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~ 186 (290)
...+..++|+|+| +.|++++. ++ .+.++++.. .+.+..+.. . ........++
T Consensus 131 -~~~v~~~~~~p~~~~~l~s~~~---------------dg-~i~iwd~~~---~~~~~~~~~---~----~~~~~v~~~~ 183 (402)
T 2aq5_A 131 -TKRVGIVAWHPTAQNVLLSAGC---------------DN-VILVWDVGT---GAAVLTLGP---D----VHPDTIYSVD 183 (402)
T ss_dssp -SSCEEEEEECSSBTTEEEEEET---------------TS-CEEEEETTT---TEEEEEECT---T----TCCSCEEEEE
T ss_pred -CCeEEEEEECcCCCCEEEEEcC---------------CC-EEEEEECCC---CCccEEEec---C----CCCCceEEEE
Confidence 1467889999999 57776554 22 333344322 111221100 0 0124577899
Q ss_pred EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412 187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL 266 (290)
Q Consensus 187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP 266 (290)
++|||++|+++. .++.|.+||+.. .+.+..+..+.. +..+..++|+|
T Consensus 184 ~~~~~~~l~~~~-~d~~i~iwd~~~---~~~~~~~~~~~~-----------------------------~~~~~~~~~~~ 230 (402)
T 2aq5_A 184 WSRDGALICTSC-RDKRVRVIEPRK---GTVVAEKDRPHE-----------------------------GTRPVHAVFVS 230 (402)
T ss_dssp ECTTSSCEEEEE-TTSEEEEEETTT---TEEEEEEECSSC-----------------------------SSSCCEEEECS
T ss_pred ECCCCCEEEEEe-cCCcEEEEeCCC---CceeeeeccCCC-----------------------------CCcceEEEEcC
Confidence 999999999988 689999999854 344444322221 11368899999
Q ss_pred CCCEEEEE
Q psy11412 267 DGKRIYVS 274 (290)
Q Consensus 267 DG~~L~Va 274 (290)
||++|+++
T Consensus 231 ~~~~l~~g 238 (402)
T 2aq5_A 231 EGKILTTG 238 (402)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEe
Confidence 99999998
No 106
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.12 E-value=2.2e-09 Score=92.78 Aligned_cols=152 Identities=14% Similarity=0.025 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
....++++|||++|+.+...++.+.+|+++... .... .+... ...+.
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~-------------------------------~~~~~ 176 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS-GVET-RLTHG-------------------------------EGRND 176 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-CCEE-ECCCS-------------------------------SSCEE
T ss_pred CccceEECCCCCEEEEEECCCCceEEEEEECCC-Ccce-EcccC-------------------------------CCccc
Confidence 477899999999998665567889999874321 1111 11000 14578
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+++|+|||++|+++....+.+.+ +.... ....+..+. ........++|||||++
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i---------------~~~~~--~~~~~~~~~---------~~~~~~~~~~~s~dg~~ 230 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQI---------------WRVRV--DGSSVERIT---------DSAYGDWFPHPSPSGDK 230 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEE---------------EEEET--TSSCEEECC---------CCSEEEEEEEECTTSSE
T ss_pred cceECCCCCEEEEEecCCCCccE---------------EEECC--CCCCcEEEe---------cCCcccCCeEECCCCCE
Confidence 89999999999887642221111 11110 000111100 01134567899999999
Q ss_pred EEEEeCC----------CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412 194 LYTSNWM----------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 263 (290)
Q Consensus 194 Lyvs~r~----------~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a 263 (290)
|+++... ...|.+||+.. .....+....... +....++
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~-------------------------------~~~~~~~ 278 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQ-------------------------------GTMNSPN 278 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEEST-------------------------------TTSCSCC
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCC-------------------------------cccccce
Confidence 8876532 25699999853 2233333222111 1467799
Q ss_pred EccCCCEEEEEcC
Q psy11412 264 LSLDGKRIYVSSS 276 (290)
Q Consensus 264 ~sPDG~~L~Van~ 276 (290)
|+|||++|++++.
T Consensus 279 ~spdg~~l~~~~~ 291 (297)
T 2ojh_A 279 WSPDGDEFAYVRY 291 (297)
T ss_dssp BCTTSSEEEEEEE
T ss_pred ECCCCCEEEEEEe
Confidence 9999999998855
No 107
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.12 E-value=4.3e-09 Score=95.38 Aligned_cols=159 Identities=10% Similarity=0.038 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++++|+ +|++++ .+++|++||+... ....+..+..++ + ....+
T Consensus 16 ~v~~~~~s~~--~las~~-~D~~i~lw~~~~~-~~~~~~~~~~~~--------------------h---------~~~v~ 62 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGS-TDRKIKLVSVKYD-DFTLIDVLDETA--------------------H---------KKAIR 62 (330)
T ss_dssp CEEEEEEETT--EEEEEE-SSSCEEEEECSSS-CCEEEEEECTTC--------------------C---------CSCEE
T ss_pred ceeeeccCCC--EEEEEc-CCCEEEEEEecCC-CeEEEEEEecCC--------------------c---------cCCEE
Confidence 5778999998 676665 5899999999652 223332221110 0 14678
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee----ecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI----QRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
.++|+|+|++|++++. ++ .+.+++..... ....+.. ..+ .......++|||
T Consensus 63 ~v~~sp~~~~las~s~---------------D~-~v~iw~~~~~~~~~~~~~~~~~-----~~~----h~~~V~~v~~sp 117 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSF---------------DS-TVSIWAKEESADRTFEMDLLAI-----IEG----HENEVKGVAWSN 117 (330)
T ss_dssp EEEECTTSSEEEEEET---------------TS-CEEEEEC-------CCCEEEEE-----EC--------CEEEEEECT
T ss_pred EEEECCCCCEEEEEeC---------------CC-cEEEEEcccCcCccccceeEEE-----EcC----CCCcEEEEEECC
Confidence 8999999999988765 12 23333331100 0000110 011 124577899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCC-CceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTA-HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG 268 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~-~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG 268 (290)
||++|+++. .+++|.+||+.... ..+.+..+. +. .+....++|+|||
T Consensus 118 ~g~~las~s-~D~~v~iwd~~~~~~~~~~~~~~~-~h------------------------------~~~v~~v~~~p~~ 165 (330)
T 2hes_X 118 DGYYLATCS-RDKSVWIWETDESGEEYECISVLQ-EH------------------------------SQDVKHVIWHPSE 165 (330)
T ss_dssp TSCEEEEEE-TTSCEEEEECCTTCCCCEEEEEEC-CC------------------------------SSCEEEEEECSSS
T ss_pred CCCEEEEEe-CCCEEEEEeccCCCCCeEEEEEec-cC------------------------------CCceEEEEECCCC
Confidence 999999888 68999999995322 122222221 11 1247889999999
Q ss_pred CEEEEEcC--CCCCCC
Q psy11412 269 KRIYVSSS--LFSPWD 282 (290)
Q Consensus 269 ~~L~Van~--~~~~~~ 282 (290)
++|+++.. ...-|+
T Consensus 166 ~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 166 ALLASSSYDDTVRIWK 181 (330)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 99998864 555564
No 108
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.11 E-value=3.5e-09 Score=97.51 Aligned_cols=219 Identities=13% Similarity=0.178 Sum_probs=118.0
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCce---EE
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV---TV 88 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~---~v 88 (290)
-++.|+...+..... ..-...+..++++|||++|++++. +++|++||+.. .+.+..+..... ....+ .+
T Consensus 163 i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~---~~~~~~~~~~~~--~~~~v~~~~~ 234 (420)
T 3vl1_A 163 LKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRNVLSASL-DGTIRLWECGT---GTTIHTFNRKEN--PHDGVNSIAL 234 (420)
T ss_dssp EEEEETTTCCCCEEE--ECCSSCEEEEEEETTTTEEEEEET-TSCEEEEETTT---TEEEEEECBTTB--TTCCEEEEEE
T ss_pred EEEEeCCCCcCceEE--cCCCCcEEEEEEcCCCCEEEEEcC-CCcEEEeECCC---CceeEEeecCCC--CCCCccEEEE
Confidence 456666655443322 012346789999999999998775 78999999965 233333322100 01111 11
Q ss_pred ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412 89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~ 168 (290)
......... .........++|+|+|++|++.+. ++ .+.+++... .+.+.....
T Consensus 235 ~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~---------------dg-~i~i~d~~~---~~~~~~~~~ 287 (420)
T 3vl1_A 235 FVGTDRQLH--------EISTSKKNNLEFGTYGKYVIAGHV---------------SG-VITVHNVFS---KEQTIQLPS 287 (420)
T ss_dssp EECCCSSCG--------GGCCCCCCTTCSSCTTEEEEEEET---------------TS-CEEEEETTT---CCEEEEECC
T ss_pred ecCCcceee--------ecccCcccceEEcCCCCEEEEEcC---------------CC-eEEEEECCC---CceeEEccc
Confidence 111100000 000134566889999999998765 22 333333321 111111110
Q ss_pred cccCccccCCCCceeEEEEccCCC-EEEEEeCCCCcEEEEEecCCCCc-eEee----------EEeeCcee---cCCCce
Q psy11412 169 SSLGSWKYPARSMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHP-VLVG----------QIFLGGKI---QSDSGV 233 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~-~~v~----------~i~~Gg~~---~~~~~v 233 (290)
........++|+|||+ +|+++. .++.|.+||+.....+ ..+. ..+-+..+ ..|++|
T Consensus 288 --------~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 288 --------KFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSI 358 (420)
T ss_dssp --------TTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEE
T ss_pred --------ccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccE
Confidence 0124577899999999 888887 7899999999654321 1111 11111111 567789
Q ss_pred EEecCCCCCC------CCCcceeecccccCCcceEEEccCCC---EEEEEcC
Q psy11412 234 TVIDDPELDK------QPDPVIIKGRRFTGSSQMFQLSLDGK---RIYVSSS 276 (290)
Q Consensus 234 ~~~~~~~~~~------~~~~~~~~~~~~~~~P~~~a~sPDG~---~L~Van~ 276 (290)
.+|+..+... .+.+..+.+. .+....++|+|||+ +|+++..
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSN--DDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCS--SCCCCEEEEECCSSSSCEEEEEET
T ss_pred EEEeccCCCCCccceeccCccEEccC--CcceEEEEEccCCCCcceEEEEcC
Confidence 9998654211 0111111111 23578999999999 5555543
No 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.11 E-value=1.5e-10 Score=105.35 Aligned_cols=160 Identities=6% Similarity=-0.128 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|+++. .++.|++||+... ..+.+..+..+ .....
T Consensus 13 ~v~~~~~s~~g~~l~~~~-~d~~i~iw~~~~~-~~~~~~~~~~h-------------------------------~~~v~ 59 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT-ATNQVELYEQDGN-GWKHARTFSDH-------------------------------DKIVT 59 (377)
T ss_dssp CCSCCEECSSSSEEECCC-SSSCBCEEEEETT-EEEECCCBCCC-------------------------------SSCEE
T ss_pred cEEEEEECCCCCEEEEec-CCCEEEEEEccCC-ceEEEEEEecC-------------------------------CceEE
Confidence 456789999999998765 4889999999652 11222211110 14678
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|+|++|++++. ++ .+.+++............ .. ........++|+|||++
T Consensus 60 ~~~~s~~~~~l~s~s~---------------d~-~v~vwd~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~~~~~ 114 (377)
T 3dwl_C 60 CVDWAPKSNRIVTCSQ---------------DR-NAYVYEKRPDGTWKQTLV-----LL----RLNRAATFVRWSPNEDK 114 (377)
T ss_dssp EEEECTTTCCEEEEET---------------TS-SEEEC------CCCCEEE-----CC----CCSSCEEEEECCTTSSC
T ss_pred EEEEeCCCCEEEEEeC---------------CC-eEEEEEcCCCCceeeeeE-----ec----ccCCceEEEEECCCCCE
Confidence 8999999999998765 22 344444432100000110 00 11245788999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEE
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYV 273 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~V 273 (290)
|+++. .++.|.+||+........+..+..+. .+....++|+|||++|++
T Consensus 115 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h------------------------------~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 115 FAVGS-GARVISVCYFEQENDWWVSKHLKRPL------------------------------RSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp CEEEE-SSSCEEECCC-----CCCCEEECSSC------------------------------CSCEEEEEECTTSSEEEE
T ss_pred EEEEe-cCCeEEEEEECCcccceeeeEeeccc------------------------------CCCeEEEEEcCCCCEEEE
Confidence 99888 68899999985422111222221101 125789999999999999
Q ss_pred EcC--CCCCCC
Q psy11412 274 SSS--LFSPWD 282 (290)
Q Consensus 274 an~--~~~~~~ 282 (290)
++. .+.-|+
T Consensus 164 ~~~d~~i~iwd 174 (377)
T 3dwl_C 164 GCADRKAYVLS 174 (377)
T ss_dssp EESSSCEEEEE
T ss_pred EeCCCEEEEEE
Confidence 865 455565
No 110
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.11 E-value=9.1e-10 Score=100.91 Aligned_cols=181 Identities=17% Similarity=0.212 Sum_probs=95.0
Q ss_pred CceEEEEEcCCCCEEEEEeC---CCCeEEEEEcCCCCCceeeeEEeecc-cccCCCceEEecCCCCc-CCCCcceeeccc
Q psy11412 33 AMVTDILISLDDRYLYTSNW---MHGDIRQYDIRDTAHPVLVGQIFLGG-KIQSDSGVTVIDDPELD-KQPDPVIIKGRR 107 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~---~~g~V~v~dv~d~~~~~~~~~i~~g~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~ 107 (290)
..+.+++++|++.++|+++. ..+.|.+||..+.. ...+ + .++ ...+.+....++...+. ..+.. ... .
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~--~-~~~~~~~~~~~~~~~~g~~~~~~~~~g-~~~--~ 192 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARV--L-QGYPGIAPEDIDLVIDGVPVQIGQPDG-TVI--R 192 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEE--C-TTCTTTSCCSCCCEETTEECBEECTTS-CEE--C
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEE--e-cCCCcccccccceeECCEEEEeccCCC-cee--c
Confidence 36899999999889999998 78899999986422 1111 1 010 00000000000000000 00000 000 0
Q ss_pred cCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeee-----eecccccccCccccCccccCCCCce
Q psy11412 108 FTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEF-----IQRNEMRSMPLSSLGSWKYPARSMV 182 (290)
Q Consensus 108 ~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~-----~~~~~i~~~p~~~~~~~~~~~~~~~ 182 (290)
...++.+|+|||||++||+++.... .+..++.... ...+.... +.. ......|
T Consensus 193 ~~~~~~gia~s~dg~~ly~~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~g~~g~p 250 (343)
T 2qe8_A 193 PHLGVNGIVLDAENEWLYLSPMHST---------------SMYRIKSADLSNLQLTDAELGSK-----IER--YSEKPIC 250 (343)
T ss_dssp CCCCEEEEEECTTSCEEEEEESSCS---------------EEEEEEHHHHTCTTCCHHHHHTT-----CEE--EEECCSC
T ss_pred eecccceeEeccCCCEEEEEeCCCC---------------eEEEEEHHHhcCCCCChhhhhcc-----eEe--cccCCCC
Confidence 1146899999999999999876322 2211111000 00000000 000 0011245
Q ss_pred eEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412 183 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 262 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 262 (290)
.+|++++||+ ||+++..++.|.+||..+ ++...+...+ . ..+|.++
T Consensus 251 dgia~d~~G~-l~va~~~~~~V~~~d~~~-G~~~~~~~~~--~------------------------------~~~p~~v 296 (343)
T 2qe8_A 251 DGISIDKDHN-IYVGDLAHSAIGVITSAD-RAYKLLVTDE--K------------------------------LSWTDSF 296 (343)
T ss_dssp SCEEECTTCC-EEEEEGGGTEEEEEETTT-TEEEEEEECG--G------------------------------GSCEEEE
T ss_pred ceEEECCCCC-EEEEccCCCeEEEEECCC-CCEEEEEECC--c------------------------------eecCCee
Confidence 6799999985 799998999999998722 2211121111 0 1279999
Q ss_pred EEccCCCEEEEEcC
Q psy11412 263 QLSLDGKRIYVSSS 276 (290)
Q Consensus 263 a~sPDG~~L~Van~ 276 (290)
+|+|||++++++++
T Consensus 297 a~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQ 310 (343)
T ss_dssp EECTTSCEEEEECC
T ss_pred EECCCCcEEEEeCc
Confidence 99999886555554
No 111
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=4.2e-09 Score=100.41 Aligned_cols=138 Identities=10% Similarity=0.004 Sum_probs=82.7
Q ss_pred eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCe----EEEEEcCCCCCceeeeEEeecccccCCCc
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD----IRQYDIRDTAHPVLVGQIFLGGKIQSDSG 85 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~----V~v~dv~d~~~~~~~~~i~~g~~~~~~~~ 85 (290)
..-.+||...+++.... .....|++|+++++|++||++++..+. +.+++. + +.......+.
T Consensus 159 ~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~-g~~~~~~~l~---------- 223 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E-SGFKVITELT---------- 223 (430)
T ss_dssp EEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G-GTSCSEEEEE----------
T ss_pred CcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C-Cceeeeeeec----------
Confidence 34455666665554433 245589999999999999999986542 333332 1 1111111110
Q ss_pred eEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccc
Q psy11412 86 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS 165 (290)
Q Consensus 86 ~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 165 (290)
...+|++++++|++.+||+++...+ .+.+++... . .+..
T Consensus 224 ----------------------~~~~p~giavdp~~g~lyv~d~~~~---------------~V~~~~~~~---~-~~~~ 262 (430)
T 3tc9_A 224 ----------------------KGQNCNGAETHPINGELYFNSWNAG---------------QVFRYDFTT---Q-ETTP 262 (430)
T ss_dssp ----------------------ECSSCCCEEECTTTCCEEEEETTTT---------------EEEEEETTT---T-EEEE
T ss_pred ----------------------cCCCceEEEEeCCCCEEEEEECCCC---------------EEEEEECCC---C-cEEE
Confidence 0257999999996667998875222 222122110 0 0000
Q ss_pred cCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 166 ~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
+. ..+....|.+|+|+|||++||+++...+.|.+|+..
T Consensus 263 ~~-------~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 263 LF-------TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EE-------ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EE-------EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 00 011224678999999999999999999999999874
No 112
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.2e-09 Score=96.08 Aligned_cols=190 Identities=11% Similarity=0.118 Sum_probs=107.6
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCCeEEEEEc----CCCCCce---eeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412 33 AMVTDILISLDDR-YLYTSNWMHGDIRQYDI----RDTAHPV---LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 104 (290)
Q Consensus 33 ~~p~~va~SpDGr-~Lyva~~~~g~V~v~dv----~d~~~~~---~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (290)
..+..++|+|||+ +|++++. +|.|.+|++ .+....- ....+.. ... .+. .
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~---~ 103 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEK-NSVARLARIVETDQEGKKYWKLTIIAELRH--PFA----------------LSA---S 103 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEET-BTEEEEEEEEEC------CEEEEEEEEEEC--CCC----------------CC-----
T ss_pred CceEEEEECCCCCcEEEEecC-CceEEEEEEecccCCccccccccccccccc--ccc----------------ccc---c
Confidence 3567899999999 9988875 799999999 6532100 1111100 000 000 0
Q ss_pred ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412 105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD 184 (290)
Q Consensus 105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~ 184 (290)
...-......++|+|+|++|+++.. ++ .+.+++. + ...+..+. . .......
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg-~i~i~~~-~---~~~~~~~~-----~----~~~~v~~ 154 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVE---------------NG-ELRLWNK-T---GALLNVLN-----F----HRAPIVS 154 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEET---------------TS-CEEEEET-T---SCEEEEEC-----C----CCSCEEE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeC---------------CC-eEEEEeC-C---CCeeeecc-----C----CCccEEE
Confidence 0000136788999999999998765 22 2333331 1 11111100 0 1245778
Q ss_pred EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC---------------------------cee---cCCCceE
Q psy11412 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG---------------------------GKI---QSDSGVT 234 (290)
Q Consensus 185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G---------------------------g~~---~~~~~v~ 234 (290)
++|+|||++|+++. .++.|.+||+.. ...+..+... +.+ ..++.|.
T Consensus 155 ~~~~~~~~~l~~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 155 VKWNKDGTHIISMD-VENVTILWNVIS---GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230 (425)
T ss_dssp EEECTTSSEEEEEE-TTCCEEEEETTT---TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEE
T ss_pred EEECCCCCEEEEEe-cCCeEEEEECCC---CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEE
Confidence 99999999999888 688999999954 2222222111 111 3466788
Q ss_pred EecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 235 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
+++..... +. ..+.+. .+....++|+|+|++|++++. .+.-|+
T Consensus 231 ~~d~~~~~--~~-~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 231 VYQITEKT--PT-GKLIGH--HGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp EEETTCSS--CS-EEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred EEEcCCCc--ee-eeeccC--CCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 88865421 11 111111 134688999999999999874 444555
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3.2e-09 Score=100.10 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=82.6
Q ss_pred CceEEEEEcCC---CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 33 AMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 33 ~~p~~va~SpD---Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
..+..++|+|| |++|++++. +++|++||+.... .+..+..++ .
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~~~~---~~~~~~~~h------------------------------~ 241 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSDR-DEHIKISHYPQCF---IVDKWLFGH------------------------------K 241 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEET-TSCEEEEEESCTT---CEEEECCCC------------------------------S
T ss_pred CceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECCCCc---eeeeeecCC------------------------------C
Confidence 46889999999 999988875 7899999996532 222211121 1
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccccccc------CccccCcc-ccCCCCce
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSM------PLSSLGSW-KYPARSMV 182 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~------p~~~~~~~-~~~~~~~~ 182 (290)
..+.+++|+ ||++|++++.. +.+-+... ..+..+..+... ..+... +......- ........
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d-~~v~vwd~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGD-DKIFAWDW----KTGKNLSTFDYN-----SLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESS-SEEEEEET----TTCCEEEEEECH-----HHHGGGCCTTSBC----------CBCCCE
T ss_pred CceEEEEEC-CCCEEEEEeCC-CeEEEEEC----CCCcEeeeecch-----hhhhhhhhhcccccccccccccccceEEE
Confidence 467899999 99999987651 11111100 111111111100 000000 00000000 00011357
Q ss_pred eEEEEccCCCEEEEEeCCCCcEEEEEe--cCCCCceEeeEEee
Q psy11412 183 TDILISLDDRYLYTSNWMHGDIRQYDI--RDTAHPVLVGQIFL 223 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv--~d~~~~~~v~~i~~ 223 (290)
..|+++|||++||++++.++.|.+||+ ........+..+..
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 789999999999999988999999999 33233345555544
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3e-09 Score=110.26 Aligned_cols=176 Identities=11% Similarity=0.095 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|||||++|+++.. +|+|++|+... .+.... ..+ ....
T Consensus 18 ~~V~~lafspdg~~lAsgs~-Dg~I~lw~~~~---~~~~~~--~~~------------------------------~~~V 61 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATV-TGEVHIYGQQQ---VEVVIK--LED------------------------------RSAI 61 (902)
T ss_dssp SCEEEEEEETTTTEEEEEET-TSEEEEECSTT---CEEEEE--CSS------------------------------CCCE
T ss_pred CCcEEEEECCCCCEEEEEeC-CCEEEEEeCCC---cEEEEE--cCC------------------------------CCCE
Confidence 45789999999999998875 79999999753 222211 110 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|+| |++|+.++. ++.+.+|++.. .+.+..+ .....+..++|+|||+
T Consensus 62 ~~l~fsp-g~~L~S~s~----------------D~~v~lWd~~~---~~~~~~~----------~~~~~V~~v~~sp~g~ 111 (902)
T 2oaj_A 62 KEMRFVK-GIYLVVINA----------------KDTVYVLSLYS---QKVLTTV----------FVPGKITSIDTDASLD 111 (902)
T ss_dssp EEEEEET-TTEEEEEET----------------TCEEEEEETTT---CSEEEEE----------ECSSCEEEEECCTTCS
T ss_pred EEEEEcC-CCEEEEEEC----------------cCeEEEEECCC---CcEEEEE----------cCCCCEEEEEECCCCC
Confidence 8899999 888887654 22444454422 1122211 1123567899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCce----------------------Ee-------eEEeeCceecCCCceEEecCCCCCC
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPV----------------------LV-------GQIFLGGKIQSDSGVTVIDDPELDK 243 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~----------------------~v-------~~i~~Gg~~~~~~~v~~~~~~~~~~ 243 (290)
+|+++. .+++|.+||+... ... .+ ..+.+| ..+++| +||......
T Consensus 112 ~l~sgs-~dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g---~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 112 WMLIGL-QNGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS---YEYVTL-TYSLVENEI 185 (902)
T ss_dssp EEEEEE-TTSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE---CSSCEE-EEETTTTEE
T ss_pred EEEEEc-CCCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE---eCCCcE-EEECCCCce
Confidence 999998 6899999998532 110 00 111122 357778 998765320
Q ss_pred CCCcceeecc-----cc-----------cCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 244 QPDPVIIKGR-----RF-----------TGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 244 ~~~~~~~~~~-----~~-----------~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
. ..+.+. .. .+....++|+|||++|++++. .+.-||-
T Consensus 186 --~-~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 186 --K-QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp --E-EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred --E-EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 0 001110 00 124789999999999999865 5566653
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.09 E-value=4.9e-09 Score=97.55 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=52.7
Q ss_pred ceeEEEEc-cCCCEEEEEeCCCCcEEEEEecCCCCceEe----------------eEEe-------------eCcee---
Q psy11412 181 MVTDILIS-LDDRYLYTSNWMHGDIRQYDIRDTAHPVLV----------------GQIF-------------LGGKI--- 227 (290)
Q Consensus 181 ~~~~i~~S-pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v----------------~~i~-------------~Gg~~--- 227 (290)
....+.++ |||+.|+... .+++|.+||+........+ .... .++.+
T Consensus 256 ~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp SCSEEEEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred cceeeeeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 45567776 8999999887 6889999998531111100 0000 00101
Q ss_pred -cCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC
Q psy11412 228 -QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 228 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
..|++|++||..... +.... .+. ....+.++|||||++|+++..
T Consensus 335 gs~Dg~V~lwd~~~~~--~~~~~-~~~--~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKD--SNSIP-IQL--GMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp ETTTTEEEEEETTCTT--CCEEE-EEC--SSCEEEEEECTTSSEEEEEES
T ss_pred ECCCCEEEEEECCCCc--EEEEe-cCC--CCcEEEEEEcCCCCEEEEEeC
Confidence 357889999865421 11111 111 234799999999999999965
No 116
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.09 E-value=2.1e-09 Score=100.99 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=80.8
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++-|+..+...............+.++++|||++|++++ .+|.|.+||++. +.+..+. ++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~~wd~~~----~~~~~~~-~h-------------- 249 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-NVGNVILLNMDG----KELWNLR-MH-------------- 249 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-SSSBEEEEESSS----CBCCCSB-CC--------------
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-CCCcEeeeccCc----ceeEEEe-cc--------------
Confidence 444555443322221122334567899999999998776 489999999853 1111111 10
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
......++|+|+++.++++... + +.+.++++... .....+..
T Consensus 250 ----------------~~~v~~v~~~p~~~~~~~s~s~--------------d-~~v~iwd~~~~---~~~~~~~~---- 291 (435)
T 4e54_B 250 ----------------KKKVTHVALNPCCDWFLATASV--------------D-QTVKIWDLRQV---RGKASFLY---- 291 (435)
T ss_dssp ----------------SSCEEEEEECTTCSSEEEEEET--------------T-SBCCEEETTTC---CSSSCCSB----
T ss_pred ----------------cceEEeeeecCCCceEEEEecC--------------c-ceeeEEecccc---cccceEEE----
Confidence 1457889999999866554431 1 23333333211 00100000
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
.......+..++|||||++|+++. .+++|.+||+.+
T Consensus 292 --~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~ 327 (435)
T 4e54_B 292 --SLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ 327 (435)
T ss_dssp --CCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS
T ss_pred --eeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC
Confidence 001124577899999999999888 689999999964
No 117
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.08 E-value=3.3e-09 Score=96.85 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...+..++++|+| +|+++. .+|.|.+||+.. .+.+..+.... .+ ......
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~-~dg~i~i~d~~~---~~~~~~~~~~~-------------------~h------~~~~~~ 235 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGF-NNGTVQISELST---LRPLYNFESQH-------------------SM------INNSNS 235 (397)
T ss_dssp CCCCCEEEECTTS-EEEEEC-TTSEEEEEETTT---TEEEEEEECCC----------------------------CCCCC
T ss_pred CCCceEEEECCCc-eEEEEe-CCCcEEEEECCC---CceeEEEeccc-------------------cc------cccCCc
Confidence 4467899999999 776655 589999999965 23333222100 00 000146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcc-----ccCccccCCCCceeEEE
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS-----SLGSWKYPARSMVTDIL 186 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~-----~~~~~~~~~~~~~~~i~ 186 (290)
+..++|+|+|++|++++.... .+.+.+++... .+.+..+... .... ..........++
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~-------------~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~ 298 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNS-------------FGCITLYETEF---GERIGSLSVPTHSSQASLG-EFAHSSWVMSLS 298 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETT-------------EEEEEEEETTT---CCEEEEECBC--------C-CBSBSSCEEEEE
T ss_pred cceEEECCCCCEEEEEecCCC-------------CceEEEEECCC---CcccceeccCccccccccc-ccccCCcEEEEE
Confidence 788999999999998765100 01222233211 1111111100 0000 000124577899
Q ss_pred EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe
Q psy11412 187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF 222 (290)
Q Consensus 187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~ 222 (290)
|+|||++|+++. .++.|.+||+.. .+.+..+.
T Consensus 299 ~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~ 330 (397)
T 1sq9_A 299 FNDSGETLCSAG-WDGKLRFWDVKT---KERITTLN 330 (397)
T ss_dssp ECSSSSEEEEEE-TTSEEEEEETTT---TEEEEEEE
T ss_pred ECCCCCEEEEEe-CCCeEEEEEcCC---CceeEEEe
Confidence 999999999888 789999999954 45555554
No 118
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.08 E-value=2.5e-08 Score=88.82 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=109.0
Q ss_pred CceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 33 AMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 33 ~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
+.+..++|+|+ |++|+++.. +++|++||+... ....+..+. ++ ..
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~-D~~v~iWd~~~~-~~~~~~~~~-~h------------------------------~~ 100 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSY-DGKVMIWKEENG-RWSQIAVHA-VH------------------------------SA 100 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEET-TTEEEEEEBSSS-CBCCCEEEC-CC------------------------------SS
T ss_pred CCeEEEEecCCCcCCEEEEEcC-CCEEEEEEcCCC-ceEEEEEee-cC------------------------------CC
Confidence 35778999874 899987775 899999999753 111221111 10 14
Q ss_pred CceEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412 111 SSQMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS 188 (290)
Q Consensus 111 gPr~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S 188 (290)
..+.++|+|+ |++|++++. ++ .+.+++... ..... . ....+ .......++|+
T Consensus 101 ~v~~v~~~p~~~g~~l~s~s~---------------d~-~v~~wd~~~---~~~~~--~-~~~~~----h~~~v~~~~~~ 154 (297)
T 2pm7_B 101 SVNSVQWAPHEYGPMLLVASS---------------DG-KVSVVEFKE---NGTTS--P-IIIDA----HAIGVNSASWA 154 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEET---------------TS-EEEEEEBCS---SSCBC--C-EEEEC----CSSCEEEEEEC
T ss_pred ceeEEEeCcCCCCcEEEEEEC---------------CC-cEEEEEecC---CCcee--e-eeeec----ccCccceEeec
Confidence 6788999998 888888765 22 333343321 10000 0 00000 12356778999
Q ss_pred cC-------------CCEEEEEeCCCCcEEEEEecCCCCce-Ee----------eEE---eeC--ce-e---cCCCceEE
Q psy11412 189 LD-------------DRYLYTSNWMHGDIRQYDIRDTAHPV-LV----------GQI---FLG--GK-I---QSDSGVTV 235 (290)
Q Consensus 189 pD-------------Gr~Lyvs~r~~~~V~v~Dv~d~~~~~-~v----------~~i---~~G--g~-~---~~~~~v~~ 235 (290)
|+ +++|+++. .+++|.+||+....... .+ ..+ +.+ +. + +.|++|.+
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCC------------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred CCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 97 57888777 68999999996432110 11 111 111 11 1 56888999
Q ss_pred ecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 236 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
|+............+......+....++|+|||++|++++. ...-|+.
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 98643211101111111112345788999999999998865 4555653
No 119
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.08 E-value=2.8e-09 Score=98.53 Aligned_cols=188 Identities=13% Similarity=0.138 Sum_probs=107.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|++++. +++|++||+... +.+..+... .....
T Consensus 68 ~V~~~~~sp~~~~l~s~s~-D~~v~iWd~~~~---~~~~~~~~h-------------------------------~~~v~ 112 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQ-DGRLIVWNALTS---QKTHAIKLH-------------------------------CPWVM 112 (380)
T ss_dssp CEEEEEECTTSSCEEEEET-TSEEEEEETTTT---EEEEEEECC-------------------------------CTTCC
T ss_pred EEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---ccceEEecC-------------------------------CCCEE
Confidence 5789999999999998875 899999998652 333322221 13466
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccCCC
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLDDR 192 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpDGr 192 (290)
.++|+|+|++|++.+. ++ .+.++++...... ....+... .+.+ ......+.|+|++.
T Consensus 113 ~~~~s~~g~~las~~~---------------d~-~v~iw~~~~~~~~--~~~~~~~~----~~~gh~~~v~~~~~~~~~~ 170 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGL---------------DS-ACSIFNLSSQADR--DGNMPVSR----VLTGHKGYASSCQYVPDQE 170 (380)
T ss_dssp CCEECTTSSEEEECCS---------------SS-CCEEEECCCCSSC--CCSSTTCC----BCCCCSSCCCCCBCCSSSS
T ss_pred EEEECCCCCEEEEeeC---------------CC-cEEEEECCCCccc--cCCcccee----eccCCCcceEEEEEecCCC
Confidence 7999999999987544 11 2222332110000 00000000 0111 13456688899754
Q ss_pred -EEEEEeCCCCcEEEEEecCCCCceE------------eeEEee---Cce-e---cCCCceEEecCCCCCCCCCcceeec
Q psy11412 193 -YLYTSNWMHGDIRQYDIRDTAHPVL------------VGQIFL---GGK-I---QSDSGVTVIDDPELDKQPDPVIIKG 252 (290)
Q Consensus 193 -~Lyvs~r~~~~V~v~Dv~d~~~~~~------------v~~i~~---Gg~-~---~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (290)
.|+++. .+++|.+||+........ +..+.. .+. + ..|++|.+||..... .+ ...+.|
T Consensus 171 ~~l~s~s-~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~-~~~~~~ 247 (380)
T 3iz6_a 171 TRLITGS-GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RA-VRTYHG 247 (380)
T ss_dssp SCEEEEC-TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CC-CEEECC
T ss_pred CEEEEEC-CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cc-eEEECC
Confidence 566665 789999999854211110 111110 111 1 568889999865311 11 112222
Q ss_pred ccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
.. +....++|+|||++|++++. ...-||-
T Consensus 248 h~--~~v~~v~~~p~~~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 248 HE--GDINSVKFFPDGQRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp CS--SCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred cC--CCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence 22 35789999999999999875 5556653
No 120
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4e-09 Score=96.20 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=81.9
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
.+.|+...+..... ..-...+..++++|++++|++++. ++.|.+||+.... .+..+...
T Consensus 230 ~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~---~~~~~~~~--------------- 288 (425)
T 1r5m_A 230 FVYQITEKTPTGKL--IGHHGPISVLEFNDTNKLLLSASD-DGTLRIWHGGNGN---SQNCFYGH--------------- 288 (425)
T ss_dssp EEEETTCSSCSEEE--CCCSSCEEEEEEETTTTEEEEEET-TSCEEEECSSSBS---CSEEECCC---------------
T ss_pred EEEEcCCCceeeee--ccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECCCCc---cceEecCC---------------
Confidence 45555554433222 012346789999999999998875 7899999987532 12111110
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
......++|+|+| ++++.+. ++.+.+++... .+.+....
T Consensus 289 ----------------~~~i~~~~~~~~~-~l~~~~~----------------d~~i~i~d~~~---~~~~~~~~----- 327 (425)
T 1r5m_A 289 ----------------SQSIVSASWVGDD-KVISCSM----------------DGSVRLWSLKQ---NTLLALSI----- 327 (425)
T ss_dssp ----------------SSCEEEEEEETTT-EEEEEET----------------TSEEEEEETTT---TEEEEEEE-----
T ss_pred ----------------CccEEEEEECCCC-EEEEEeC----------------CCcEEEEECCC---CcEeEecc-----
Confidence 1467889999999 6666544 12333333321 11111100
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
.....+..++|+|||++|+++. .++.|.+||+..
T Consensus 328 ----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~ 361 (425)
T 1r5m_A 328 ----VDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKK 361 (425)
T ss_dssp ----CTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHH
T ss_pred ----cCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Confidence 0123567899999999999988 688999999953
No 121
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.08 E-value=7.3e-09 Score=93.34 Aligned_cols=62 Identities=11% Similarity=0.198 Sum_probs=45.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
+++..|.+++++++|+ ||+++...+.|..||... . ....+.. +
T Consensus 29 p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~--~~~~~~~--------------------------------~ 71 (306)
T 2p4o_A 29 PVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG--N--QQIHATV--------------------------------E 71 (306)
T ss_dssp CTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC--C--EEEEEEC--------------------------------S
T ss_pred CCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCC--c--eEEEEeC--------------------------------C
Confidence 4567899999999998 899998889998887532 1 2211111 1
Q ss_pred CCceEEEEccCCCEEEEEcC
Q psy11412 110 GSSQMFQLSLDGKRIYVSSS 129 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~ne 129 (290)
..|.++++++||+ |||++.
T Consensus 72 ~~p~gia~~~dG~-l~vad~ 90 (306)
T 2p4o_A 72 GKVSGLAFTSNGD-LVATGW 90 (306)
T ss_dssp SEEEEEEECTTSC-EEEEEE
T ss_pred CCceeEEEcCCCc-EEEEec
Confidence 4688899999998 787763
No 122
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.08 E-value=3.6e-09 Score=97.04 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|++++|++++. +++|++||+... +.+..+..+ .....
T Consensus 156 ~v~~~~~~~~~~~l~t~s~-D~~v~lwd~~~~---~~~~~~~~h-------------------------------~~~v~ 200 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASG-DGTCALWDVESG---QLLQSFHGH-------------------------------GADVL 200 (354)
T ss_dssp CEEEEEECSSSSEEEEEET-TSEEEEEETTTC---CEEEEEECC-------------------------------SSCEE
T ss_pred cEEEEEEeCCCCEEEEEeC-CCcEEEEeCCCC---eEEEEEcCC-------------------------------CCCeE
Confidence 5678999999999998875 899999999653 333322111 13456
Q ss_pred EEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 114 MFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 114 ~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
.++|+| +|++|+..+. ++ .+.+|+... .+.+... .+ .......++|+|||
T Consensus 201 ~~~~~~~~~g~~l~sgs~---------------Dg-~v~~wd~~~---~~~~~~~-----~~----h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGC---------------DK-KAMVWDMRS---GQCVQAF-----ET----HESDVNSVRYYPSG 252 (354)
T ss_dssp EEEECCCSSCCEEEEEET---------------TS-CEEEEETTT---CCEEEEE-----CC----CSSCEEEEEECTTS
T ss_pred EEEEEeCCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEe-----cC----CCCCeEEEEEeCCC
Confidence 678877 5788888765 22 333344322 1111110 01 12457789999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
+.|+++. .+++|.+||+.. .+.+..+..... ......++|+|||++|
T Consensus 253 ~~l~s~s-~D~~v~lwd~~~---~~~~~~~~~~~~-----------------------------~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 253 DAFASGS-DDATCRLYDLRA---DREVAIYSKESI-----------------------------IFGASSVDFSLSGRLL 299 (354)
T ss_dssp SEEEEEE-TTSCEEEEETTT---TEEEEEECCTTC-----------------------------CSCEEEEEECTTSSEE
T ss_pred CEEEEEe-CCCeEEEEECCC---CcEEEEEcCCCc-----------------------------ccceeEEEEeCCCCEE
Confidence 9999888 689999999853 222222211110 0135789999999999
Q ss_pred EEEcC--CCCCCC
Q psy11412 272 YVSSS--LFSPWD 282 (290)
Q Consensus 272 ~Van~--~~~~~~ 282 (290)
+++.. .+.-||
T Consensus 300 ~~g~~d~~i~vwd 312 (354)
T 2pbi_B 300 FAGYNDYTINVWD 312 (354)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEEECCCcEEEEE
Confidence 99865 455555
No 123
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=2.5e-09 Score=101.09 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=82.7
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC-eEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG-DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g-~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
-.++|...+++.... .....|+ ++++|+|++||+++...+ .|.+|+......+..+.....
T Consensus 154 I~~id~~~g~~~~~~---~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-------------- 215 (409)
T 3hrp_A 154 VRLISVDDNKVTTVH---PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-------------- 215 (409)
T ss_dssp EEEEETTTTEEEEEE---ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT--------------
T ss_pred EEEEECCCCEEEEee---ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc--------------
Confidence 345566555554433 2244677 999999999999998554 888888754322222211100
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
..+..|++++|+|++.+||++.. .+ .+..++..... ...+.....
T Consensus 216 ----------------~~~~~p~~iav~p~~g~lyv~d~-~~---------------~I~~~d~~~~~-~~~~~~~~~-- 260 (409)
T 3hrp_A 216 ----------------TFSGKIGAVALDETEEWLYFVDS-NK---------------NFGRFNVKTQE-VTLIKQLEL-- 260 (409)
T ss_dssp ----------------TSCSCCCBCEECTTSSEEEEECT-TC---------------EEEEEETTTCC-EEEEEECCC--
T ss_pred ----------------hhcCCcEEEEEeCCCCeEEEEEC-CC---------------cEEEEECCCCC-EEEEecccc--
Confidence 01267999999998888998543 11 11111111000 000000000
Q ss_pred cCccccCCCCcee-EEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 171 LGSWKYPARSMVT-DILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 171 ~~~~~~~~~~~~~-~i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
.+ .....|. +|+|+|++.+||+++..++.|..|+..
T Consensus 261 -~g---~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 261 -SG---SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp -CS---CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred -cC---CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 00 0112245 899999989999999999999999763
No 124
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.07 E-value=4.3e-09 Score=98.73 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.++++++.+.+||+++...+.|..++... ...+.+ +..+ -..
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~--~~~~-------------------------------~~~ 160 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEV--VSTG-------------------------------LES 160 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEEE--ECSS-------------------------------CSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEEE--EeCC-------------------------------CCC
Confidence 347999999999999999999899999998753 221111 1011 147
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
|.++++++.++.||+++...+.+.+... ++... ..+. . ..-..|.+|+++|++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~-----dg~~~-----------~~l~-------~----~~l~~P~giavdp~~ 213 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANL-----DGAHR-----------KVLL-------W----QSLEKPRAIALHPME 213 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBT-----TSCSC-----------EEEE-------C----SSCSCEEEEEEETTT
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeC-----CCCce-----------EEee-------c----CCCCCCcEEEEEcCC
Confidence 8899999999999998763322221110 11100 0000 0 011468899999999
Q ss_pred CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
++||+++++. +.|..++..- ...+.+. ..+. .+|++++|+|++++
T Consensus 214 g~ly~td~~~~~~I~r~~~dG-~~~~~~~--~~~~-------------------------------~~PnGlavd~~~~~ 259 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMDG-SGRRIIA--DTHL-------------------------------FWPNGLTIDYAGRR 259 (386)
T ss_dssp TEEEEEECSSSCEEEEEETTS-CSCEEEE--CSSC-------------------------------SCEEEEEEEGGGTE
T ss_pred CeEEEeccCCCCEEEEEeCCC-CCcEEEE--ECCC-------------------------------CCeeeEEEeCCCCE
Confidence 9999999988 8898888742 1111111 1111 26999999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||+++.
T Consensus 260 lY~aD~ 265 (386)
T 3v65_B 260 MYWVDA 265 (386)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999976
No 125
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.07 E-value=7.2e-09 Score=94.70 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=106.3
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 91 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~ 91 (290)
++.++...+.....-...-...+..++|+| ++++|++++. ++.|++||+.. ..+..+....
T Consensus 99 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~----~~~~~~~~~~------------- 160 (383)
T 3ei3_B 99 ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-RGATTLRDFSG----SVIQVFAKTD------------- 160 (383)
T ss_dssp EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-TTEEEEEETTS----CEEEEEECCC-------------
T ss_pred EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-CCEEEEEECCC----CceEEEeccC-------------
Confidence 455665444333220011345788999999 6788887765 89999999963 1122111110
Q ss_pred CCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCcccc
Q psy11412 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSL 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~ 171 (290)
........++|+|++++|++++. + +.+..++.. .+.+..+.
T Consensus 161 ---------------~~~~~v~~~~~~~~~~~l~~~~~---------------d-~~i~i~d~~----~~~~~~~~---- 201 (383)
T 3ei3_B 161 ---------------SWDYWYCCVDVSVSRQMLATGDS---------------T-GRLLLLGLD----GHEIFKEK---- 201 (383)
T ss_dssp ---------------CSSCCEEEEEEETTTTEEEEEET---------------T-SEEEEEETT----SCEEEEEE----
T ss_pred ---------------CCCCCeEEEEECCCCCEEEEECC---------------C-CCEEEEECC----CCEEEEec----
Confidence 00145788999999999998765 2 234334431 11111100
Q ss_pred CccccCCCCceeEEEEccCCC-EEEEEeCCCCcEEEEEecCCCC-ceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412 172 GSWKYPARSMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI 249 (290)
Q Consensus 172 ~~~~~~~~~~~~~i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~-~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~ 249 (290)
+ .......++|+|||+ +|+++. .++.|.+||+..... ...+....-.
T Consensus 202 -~----h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------- 250 (383)
T 3ei3_B 202 -L----HKAKVTHAEFNPRCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEMPHE------------------------- 250 (383)
T ss_dssp -C----SSSCEEEEEECSSCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEEECS-------------------------
T ss_pred -c----CCCcEEEEEECCCCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEecCC-------------------------
Confidence 0 124577899999999 777776 689999999964221 2233322111
Q ss_pred eecccccCCcceEEEcc-CCCEEEEEcC--CCCCCC
Q psy11412 250 IKGRRFTGSSQMFQLSL-DGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 250 ~~~~~~~~~P~~~a~sP-DG~~L~Van~--~~~~~~ 282 (290)
+....++|+| ||++|++++. .+.-|+
T Consensus 251 -------~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 251 -------KPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp -------SCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred -------CceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 2578899999 9999999875 444454
No 126
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.7e-10 Score=101.92 Aligned_cols=119 Identities=8% Similarity=0.105 Sum_probs=74.3
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCC---eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccc
Q psy11412 32 PAMVTDILISLDDR-YLYTSNWMHG---DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR 107 (290)
Q Consensus 32 ~~~p~~va~SpDGr-~Lyva~~~~g---~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 107 (290)
...+..++++|+|. +|+++. .++ .|++||+.....+ +..+..++
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~--~~~~~~~~----------------------------- 261 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATAT-GSDNDPSILIWDLRNANTP--LQTLNQGH----------------------------- 261 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEE-CCSSSCCCCEEETTSTTSC--SBCCCSCC-----------------------------
T ss_pred CCceEEEEECCCCCCEEEEEE-CCCCCceEEEEeCCCCCCC--cEEeecCc-----------------------------
Confidence 44688999999985 565554 466 9999999763221 11111010
Q ss_pred cCCCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412 108 FTGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL 186 (290)
Q Consensus 108 ~g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~ 186 (290)
...+..++|+| ++++|++.+. ++ .+.+++... .+.+..+. + .......++
T Consensus 262 -~~~v~~~~~s~~~~~~l~s~~~---------------dg-~v~~wd~~~---~~~~~~~~-----~----~~~~v~~~~ 312 (416)
T 2pm9_A 262 -QKGILSLDWCHQDEHLLLSSGR---------------DN-TVLLWNPES---AEQLSQFP-----A----RGNWCFKTK 312 (416)
T ss_dssp -SSCEEEEEECSSCSSCEEEEES---------------SS-EEEEECSSS---CCEEEEEE-----C----SSSCCCCEE
T ss_pred -cCceeEEEeCCCCCCeEEEEeC---------------CC-CEEEeeCCC---Cccceeec-----C----CCCceEEEE
Confidence 14678899999 9999988765 22 333344322 11222111 0 123456799
Q ss_pred EccCC-CEEEEEeCCCCcEEEEEecCC
Q psy11412 187 ISLDD-RYLYTSNWMHGDIRQYDIRDT 212 (290)
Q Consensus 187 ~SpDG-r~Lyvs~r~~~~V~v~Dv~d~ 212 (290)
|+||| ++|+++. .++.|.+||+...
T Consensus 313 ~s~~~~~~l~s~~-~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 313 FAPEAPDLFACAS-FDNKIEVQTLQNL 338 (416)
T ss_dssp ECTTCTTEEEECC-SSSEEEEEESCCC
T ss_pred ECCCCCCEEEEEe-cCCcEEEEEccCC
Confidence 99999 6766665 6899999999653
No 127
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.06 E-value=8.3e-09 Score=96.55 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|+|+|++|++++. +++|++||+... ..+..+. ++ ....
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~-D~~i~~wd~~~~---~~~~~~~-~h------------------------------~~~v 237 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASR-DKTIKMWEVQTG---YCVKTFT-GH------------------------------REWV 237 (410)
T ss_dssp SCEEEEEECSSSSEEEEEET-TSEEEEEETTTC---CEEEEEE-CC------------------------------SSCE
T ss_pred CCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC---cEEEEEe-CC------------------------------CccE
Confidence 36789999999999988775 899999999753 2332221 11 1457
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC--
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD-- 190 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD-- 190 (290)
+.+.|+|||+++++++. ++ .+.+|+... ......+ .+ .......++|+|+
T Consensus 238 ~~~~~~~~g~~l~s~s~---------------D~-~v~vwd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSN---------------DQ-TVRVWVVAT---KECKAEL-----RE----HRHVVECISWAPESS 289 (410)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-CEEEEETTT---CCEEEEE-----CC----CSSCEEEEEECCSCG
T ss_pred EEEEECCCCCEEEEEcC---------------CC-eEEEEECCC---CceeeEe-----cC----CCceEEEEEEcCccc
Confidence 88999999999988765 22 333333321 1111100 00 1234566788886
Q ss_pred ------------------CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeec
Q psy11412 191 ------------------DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKG 252 (290)
Q Consensus 191 ------------------Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (290)
|++|+++. .+++|.+||+.. ...+..+. |.
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs-~D~~i~iwd~~~---~~~~~~~~-~h--------------------------- 337 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGS-RDKTIKMWDVST---GMCLMTLV-GH--------------------------- 337 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEE-TTSEEEEEETTT---TEEEEEEE-CC---------------------------
T ss_pred ccchhhhccccccccCCCCCEEEEEe-CCCeEEEEECCC---CceEEEEE-CC---------------------------
Confidence 77888888 688999999853 33333332 22
Q ss_pred ccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 253 RRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 253 ~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
.+..+.++|+|+|++|+++.. .+.-||-
T Consensus 338 ---~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 338 ---DNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp ---SSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ---CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 125788999999999998865 4566654
No 128
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.06 E-value=2e-09 Score=93.47 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=89.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.+++++|+|+ ||+++...+.|.+|+... ...... ... ....|
T Consensus 108 ~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~---~~~~~~-~~~------------------------------~~~~p 152 (270)
T 1rwi_B 108 NYPEGLAVDTQGA-VYVADRGNNRVVKLAAGS---KTQTVL-PFT------------------------------GLNDP 152 (270)
T ss_dssp SSEEEEEECTTCC-EEEEEGGGTEEEEECTTC---CSCEEC-CCC------------------------------SCCSC
T ss_pred CCCcceEECCCCC-EEEEECCCCEEEEEECCC---ceeEee-ccc------------------------------cCCCc
Confidence 4799999999997 888988788999996422 111100 000 01468
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++|+++|+|+ +|+++...+ .+..++... ..... .. ......+.+|++++||
T Consensus 153 ~~i~~~~~g~-l~v~~~~~~---------------~i~~~~~~~---~~~~~-~~--------~~~~~~p~~i~~d~~g- 203 (270)
T 1rwi_B 153 DGVAVDNSGN-VYVTDTDNN---------------RVVKLEAES---NNQVV-LP--------FTDITAPWGIAVDEAG- 203 (270)
T ss_dssp CCEEECTTCC-EEEEEGGGT---------------EEEEECTTT---CCEEE-CC--------CSSCCSEEEEEECTTC-
T ss_pred eeEEEeCCCC-EEEEECCCC---------------EEEEEecCC---CceEe-ec--------ccCCCCceEEEECCCC-
Confidence 8999999998 888765211 222122110 00000 00 0011457889999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
.||+++..++.|.+||.... .. ..+...+ ...|..++++|||+ ||
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~---~~-~~~~~~~------------------------------~~~p~~i~~~~~g~-l~ 248 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGST---TS-TVLPFTG------------------------------LNTPLAVAVDSDRT-VY 248 (270)
T ss_dssp CEEEEETTTSCEEEECTTCS---CC-EECCCCS------------------------------CSCEEEEEECTTCC-EE
T ss_pred CEEEEECCCCcEEEEcCCCC---cc-eeeccCC------------------------------CCCceeEEECCCCC-EE
Confidence 78999988899999986421 11 1111111 02699999999997 88
Q ss_pred EEcC
Q psy11412 273 VSSS 276 (290)
Q Consensus 273 Van~ 276 (290)
+++.
T Consensus 249 v~~~ 252 (270)
T 1rwi_B 249 VADR 252 (270)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 8865
No 129
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.06 E-value=8e-09 Score=93.85 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCC-ceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAH-PVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~-~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.+..++|+|||++|++++. ++.|++|++..... ......+ .++ ....
T Consensus 99 ~v~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~~~-~~h------------------------------~~~v 146 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGL-DNICSIYNLKTREGNVRVSREL-AGH------------------------------TGYL 146 (340)
T ss_dssp CEEEEEECTTSSEEEEEET-TCEEEEEETTTCSBSCEEEEEE-ECC------------------------------SSCE
T ss_pred cEEEEEECCCCCEEEEEeC-CCeEEEEECccCCCcceeEEEe-cCC------------------------------CccE
Confidence 5778999999999998875 79999999965321 1222211 111 1346
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..+.|+++++ +++++. ++ .+.++++.. .+.+..+ .+ .......++|+|||+
T Consensus 147 ~~~~~~~~~~-l~s~s~---------------d~-~i~~wd~~~---~~~~~~~-----~~----h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 147 SCCRFLDDNQ-IVTSSG---------------DT-TCALWDIET---GQQTTTF-----TG----HTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEEEEEETTE-EEEEET---------------TS-CEEEEETTT---TEEEEEE-----CC----CSSCEEEEEECTTSS
T ss_pred EEEEECCCCc-EEEEEC---------------CC-cEEEEECCC---CcEEEEE-----cC----CCCceEEEEECCCCC
Confidence 6789999987 444433 12 333344322 1111110 01 123567899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|+++. .+++|.+||+.. ...+..+. +. .+....++|+|+|++|+
T Consensus 198 ~l~sg~-~d~~v~~wd~~~---~~~~~~~~-~h------------------------------~~~v~~v~~~p~~~~l~ 242 (340)
T 1got_B 198 LFVSGA-CDASAKLWDVRE---GMCRQTFT-GH------------------------------ESDINAICFFPNGNAFA 242 (340)
T ss_dssp EEEEEE-TTSCEEEEETTT---CSEEEEEC-CC------------------------------SSCEEEEEECTTSSEEE
T ss_pred EEEEEe-CCCcEEEEECCC---CeeEEEEc-CC------------------------------cCCEEEEEEcCCCCEEE
Confidence 998887 689999999854 22222221 11 01478899999999999
Q ss_pred EEcC--CCCCCC
Q psy11412 273 VSSS--LFSPWD 282 (290)
Q Consensus 273 Van~--~~~~~~ 282 (290)
+++. ...-||
T Consensus 243 s~s~d~~v~iwd 254 (340)
T 1got_B 243 TGSDDATCRLFD 254 (340)
T ss_dssp EEETTSCEEEEE
T ss_pred EEcCCCcEEEEE
Confidence 9865 555565
No 130
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.05 E-value=9e-09 Score=95.38 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=98.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.+.+..++++|||++|++++. ++.|++||+... +.+..+... ...
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~---~~~~~~~~~-------------------------------~~~ 261 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGN-DNVVQIWDARSS---IPKFTKTNH-------------------------------NAA 261 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSCEEEEETTCS---SEEEEECCC-------------------------------SSC
T ss_pred CCCeeEEEEcCCCCEEEEEeC-CCeEEEccCCCC---CccEEecCC-------------------------------cce
Confidence 446889999999999998875 789999999752 222211111 146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
+..++|+|+++.++++.... ..+.+..++... .+.+.. +........++++|||
T Consensus 262 v~~~~~~p~~~~ll~~~~gs-------------~d~~i~i~d~~~---~~~~~~----------~~~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGT-------------MDKQIHFWNAAT---GARVNT----------VDAGSQVTSLIWSPHS 315 (401)
T ss_dssp CCEEEECTTSTTEEEEECCT-------------TTCEEEEEETTT---CCEEEE----------EECSSCEEEEEECSSS
T ss_pred EEEEEECCCCCCEEEEecCC-------------CCCEEEEEECCC---CCEEEE----------EeCCCcEEEEEECCCC
Confidence 78899999998777764300 112333333321 111111 1122457789999999
Q ss_pred CEEEEEe-CCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSN-WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~-r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
++|+++. ..++.|.+||+... ....+..+. +. .+....++|+|||++
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~-~~~~~~~~~-~h------------------------------~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIP-AH------------------------------DTRVLYSALSPDGRI 363 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETT-EEEEEEEEE-CC------------------------------SSCCCEEEECTTSSE
T ss_pred CeEEEEeecCCCcEEEEecCCc-cceeEEEec-CC------------------------------CCCEEEEEECCCCCE
Confidence 9999864 35799999999642 111111111 11 125788999999999
Q ss_pred EEEEcC--CCCCCC
Q psy11412 271 IYVSSS--LFSPWD 282 (290)
Q Consensus 271 L~Van~--~~~~~~ 282 (290)
|++++. .+.-|+
T Consensus 364 l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 364 LSTAASDENLKFWR 377 (401)
T ss_dssp EEEECTTSEEEEEE
T ss_pred EEEEeCCCcEEEEE
Confidence 999865 344454
No 131
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.2e-09 Score=113.15 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=48.8
Q ss_pred CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412 180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 259 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P 259 (290)
..+..|+||||| +|.++. .+++|.+||+.. +..+....+-. +. .|. .+.+
T Consensus 576 ~~V~svafSpdG-~lAsgs-~D~tv~lwd~~~---~~~~~~~~~~~-~~----------------------~gh--~~~V 625 (902)
T 2oaj_A 576 GKTSAINNSNIG-FVGIAY-AAGSLMLIDRRG---PAIIYMENIRE-IS----------------------GAQ--SACV 625 (902)
T ss_dssp CSEEEEEECBTS-EEEEEE-TTSEEEEEETTT---TEEEEEEEGGG-TC----------------------SSC--CCCE
T ss_pred CcEEEEEecCCc-EEEEEe-CCCcEEEEECCC---CeEEEEeehhH-hc----------------------ccc--ccce
Confidence 467889999999 988888 689999999853 33433211100 00 000 1258
Q ss_pred ceEEEc-----cCC---CEEEEEcC--CCCCCC
Q psy11412 260 QMFQLS-----LDG---KRIYVSSS--LFSPWD 282 (290)
Q Consensus 260 ~~~a~s-----PDG---~~L~Van~--~~~~~~ 282 (290)
..++|| ||| ++|+++.. ....|+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 999999 986 88988855 555665
No 132
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.6e-08 Score=92.71 Aligned_cols=186 Identities=8% Similarity=0.062 Sum_probs=105.4
Q ss_pred EEEEecCCCc---cCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceE
Q psy11412 12 DKVIDIPAKQ---VQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVT 87 (290)
Q Consensus 12 ~~~~~~~~~~---~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~ 87 (290)
-++.++...+ ..... .....+..++|+|||++|+++.. +|.|++|++...... +.+..+. ++
T Consensus 47 v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~-~h--------- 112 (416)
T 2pm9_A 47 LELWSLLAADSEKPIASL---QVDSKFNDLDWSHNNKIIAGALD-NGSLELYSTNEANNAINSMARFS-NH--------- 112 (416)
T ss_dssp CEEEESSSGGGCSCSCCC---CCSSCEEEEEECSSSSCEEEEES-SSCEEEECCSSTTSCCCEEEECC-CS---------
T ss_pred EEEEEccCCCCCcEEEEE---ecCCceEEEEECCCCCeEEEEcc-CCeEEEeecccccccccchhhcc-CC---------
Confidence 3566666543 22222 23557889999999999988875 789999999752211 1222111 10
Q ss_pred EecCCCCcCCCCcceeeccccCCCceEEEEccC-CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc---cc
Q psy11412 88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLD-GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN---EM 163 (290)
Q Consensus 88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPd-G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~---~i 163 (290)
......++|+|+ +++|++.+. ++ .+.+++........ ..
T Consensus 113 ---------------------~~~v~~~~~~~~~~~~l~s~~~---------------dg-~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 113 ---------------------SSSVKTVKFNAKQDNVLASGGN---------------NG-EIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp ---------------------SSCCCEEEECSSSTTBEEEECS---------------SS-CEEBCBTTTTSSCTTTCCC
T ss_pred ---------------------ccceEEEEEcCCCCCEEEEEcC---------------CC-eEEEEECCCCccccccccc
Confidence 146788999999 788887654 12 23333332210000 00
Q ss_pred cccCccccCccccCCCCceeEEEEccC-CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCC
Q psy11412 164 RSMPLSSLGSWKYPARSMVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD 242 (290)
Q Consensus 164 ~~~p~~~~~~~~~~~~~~~~~i~~SpD-Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~ 242 (290)
... ... .........++|+|| +++|+++. .++.|.+||+.. .+.+..+......
T Consensus 156 ~~~--~~~----~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~---~~~~~~~~~~~~~--------------- 210 (416)
T 2pm9_A 156 LTP--GQS----MSSVDEVISLAWNQSLAHVFASAG-SSNFASIWDLKA---KKEVIHLSYTSPN--------------- 210 (416)
T ss_dssp BCC--CCS----CCSSCCCCEEEECSSCTTEEEEES-SSSCEEEEETTT---TEEEEEECCCCCS---------------
T ss_pred ccc--ccc----cCCCCCeeEEEeCCCCCcEEEEEc-CCCCEEEEECCC---CCcceEEeccccc---------------
Confidence 000 000 011235678999999 66766666 688999999854 3444443322100
Q ss_pred CCCCcceeecccccCCcceEEEccCC-CEEEEEcC-----CCCCCCc
Q psy11412 243 KQPDPVIIKGRRFTGSSQMFQLSLDG-KRIYVSSS-----LFSPWDK 283 (290)
Q Consensus 243 ~~~~~~~~~~~~~~~~P~~~a~sPDG-~~L~Van~-----~~~~~~~ 283 (290)
.+. ......++|+|+| ++|++++. .+.-||-
T Consensus 211 --------~~~--~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 211 --------SGI--KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp --------SCC--CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred --------ccc--CCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 000 1257899999998 46666654 4555553
No 133
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.05 E-value=1.3e-08 Score=89.61 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
+.+..++|+|||++|++++. +|+|++||+...... +....+. ++ ...
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~------------------------------~~~ 59 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWR-AH------------------------------DSS 59 (351)
T ss_dssp SCEEEEEECSSSSEEEEEET-TSEEEEEEECSSSCCEEEEEEEE-CC------------------------------SSC
T ss_pred cceeEEEEcCCCCEEEEeeC-CCeEEEEECCCCCCcceecceec-cC------------------------------CCc
Confidence 35789999999999998875 899999999753322 2222221 11 146
Q ss_pred ceEEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec------ccccccCccccCccccCCCCcee
Q psy11412 112 SQMFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR------NEMRSMPLSSLGSWKYPARSMVT 183 (290)
Q Consensus 112 Pr~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~------~~i~~~p~~~~~~~~~~~~~~~~ 183 (290)
...++|+| |+++|++++. ++ .+.+++....... +.+.. .. .......
T Consensus 60 v~~~~~~~~~d~~~l~s~~~---------------dg-~v~vwd~~~~~~~~~~~~~~~~~~-----~~----~~~~~v~ 114 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASY---------------DK-TVKLWEEDPDQEECSGRRWNKLCT-----LN----DSKGSLY 114 (351)
T ss_dssp EEEEEECCGGGCSEEEEEET---------------TS-CEEEEEECTTSCTTSSCSEEEEEE-----EC----CCSSCEE
T ss_pred EEEEEEcCCCCCCEEEEEcC---------------CC-eEEEEecCCCcccccccCcceeee-----ec----ccCCcee
Confidence 78899999 6999998765 12 3333443220000 00110 00 0124578
Q ss_pred EEEEccC--CCEEEEEeCCCCcEEEEEecCC
Q psy11412 184 DILISLD--DRYLYTSNWMHGDIRQYDIRDT 212 (290)
Q Consensus 184 ~i~~SpD--Gr~Lyvs~r~~~~V~v~Dv~d~ 212 (290)
.++++|+ |++|+++. .++.|.+||+...
T Consensus 115 ~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 115 SVKFAPAHLGLKLACLG-NDGILRLYDALEP 144 (351)
T ss_dssp EEEECCGGGCSEEEEEE-TTCEEEEEECSST
T ss_pred EEEEcCCCCCcEEEEec-CCCcEEEecCCCh
Confidence 8999999 99999888 6899999998643
No 134
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.05 E-value=7.8e-09 Score=95.67 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.++++++.+..||+++...+.|..++.... ..+.+ +..+ -..|
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~--~~~~-------------------------------~~~p 118 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEV--VSTG-------------------------------LESP 118 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEE--ECSS-------------------------------CSCC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCC-CceEE--EeCC-------------------------------CCCc
Confidence 468999999999999999998999999987532 22221 1011 1478
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
.++++++.++.||+++...+.+.+... +|... ..+. ...-..|.+|+++|+++
T Consensus 119 ~glavd~~~g~ly~~d~~~~~I~~~~~-----dG~~~-----------~~l~-----------~~~l~~P~~iavdp~~g 171 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGTSRIEVANL-----DGAHR-----------KVLL-----------WQSLEKPRAIALHPMEG 171 (349)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE-----------CTTCSCEEEEEEETTTT
T ss_pred cEEEEecCCCeEEEEcCCCCeEEEEcC-----CCCce-----------EEEE-----------eCCCCCcceEEEecCcC
Confidence 999999999999998763322221110 11100 0000 00124688999999999
Q ss_pred EEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 193 YLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 193 ~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
+||+++++. +.|..++.+- ...+.+. ..+. ..|++++|+|++++|
T Consensus 172 ~ly~td~~~~~~I~r~~~dG-~~~~~~~--~~~~-------------------------------~~PnGla~d~~~~~l 217 (349)
T 3v64_C 172 TIYWTDWGNTPRIEASSMDG-SGRRIIA--DTHL-------------------------------FWPNGLTIDYAGRRM 217 (349)
T ss_dssp EEEEEECSSSCEEEEEETTS-CSCEESC--CSSC-------------------------------SCEEEEEEETTTTEE
T ss_pred eEEEeccCCCCEEEEEeCCC-CCcEEEE--ECCC-------------------------------CCcceEEEeCCCCEE
Confidence 999999988 8899888742 1111111 0111 269999999999999
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
|++..
T Consensus 218 Y~aD~ 222 (349)
T 3v64_C 218 YWVDA 222 (349)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99976
No 135
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.04 E-value=9.3e-09 Score=91.99 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=72.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
++..|.+++++|||+ |+++. .+.|.+||..+ +..+.+.....+ ....
T Consensus 52 ~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~-g~~~~~~~~~~~-----------------------------~~~~ 98 (297)
T 3g4e_A 52 MDAPVSSVALRQSGG-YVATI--GTKFCALNWKE-QSAVVLATVDND-----------------------------KKNN 98 (297)
T ss_dssp CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTT-TEEEEEEECCTT-----------------------------CSSE
T ss_pred CCCceEEEEECCCCC-EEEEE--CCeEEEEECCC-CcEEEEEecCCC-----------------------------CCCC
Confidence 466899999999999 66665 46899999754 222222111000 0114
Q ss_pred CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
.|+.++++|||+ +|+++...... ..... ...+.+..++. ...+..+ ......+.+|+||||
T Consensus 99 ~~~di~~d~dG~-l~~~~~~~~~~-~~~~~---~~~~~l~~~d~-----~g~~~~~---------~~~~~~pngi~~spd 159 (297)
T 3g4e_A 99 RFNDGKVDPAGR-YFAGTMAEETA-PAVLE---RHQGALYSLFP-----DHHVKKY---------FDQVDISNGLDWSLD 159 (297)
T ss_dssp EEEEEEECTTSC-EEEEEEECCSB-TTBCC---TTCEEEEEECT-----TSCEEEE---------EEEESBEEEEEECTT
T ss_pred CCCCEEECCCCC-EEEecCCcccc-ccccc---CCCcEEEEEEC-----CCCEEEE---------eeccccccceEEcCC
Confidence 688999999999 66654210000 00000 00111111111 0000000 001135678999999
Q ss_pred CCEEEEEeCCCCcEEEEEec
Q psy11412 191 DRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~ 210 (290)
|++||+++..++.|.+||+.
T Consensus 160 g~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEecCCCCcEEEEecc
Confidence 99999999888999999984
No 136
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.04 E-value=6.5e-09 Score=104.11 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=97.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++|||||++|+++.. +|.|.+||+.+ .+.+..+... ....
T Consensus 14 ~~v~~i~~sp~~~~la~~~~-~g~v~iwd~~~---~~~~~~~~~~-------------------------------~~~v 58 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLY-SGRVEIWNYET---QVEVRSIQVT-------------------------------ETPV 58 (814)
T ss_dssp SCEEEEEECSSSSEEEEEET-TSEEEEEETTT---TEEEEEEECC-------------------------------SSCE
T ss_pred CceEEEEECCCCCEEEEEeC-CCEEEEEECCC---CceEEEEecC-------------------------------CCcE
Confidence 35789999999999998875 78999999865 3333333211 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
+.++|+|||++|++++. ++ .+.+++..+ .+.+..+. + .......++|||||+
T Consensus 59 ~~~~~s~~~~~l~~~~~---------------dg-~i~vw~~~~---~~~~~~~~-----~----~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSD---------------DF-RIRVFNYNT---GEKVVDFE-----A----HPDYIRSIAVHPTKP 110 (814)
T ss_dssp EEEEEEGGGTEEEEEET---------------TS-EEEEEETTT---CCEEEEEE-----C----CSSCEEEEEECSSSS
T ss_pred EEEEEeCCCCEEEEEeC---------------CC-eEEEEECCC---CcEEEEEe-----c----CCCCEEEEEEeCCCC
Confidence 88999999999998765 12 333333321 11111100 0 124577899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc-CCCEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRI 271 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP-DG~~L 271 (290)
+|+++. .++.|.+||+... ......+ .+. .+....++|+| ||+.|
T Consensus 111 ~l~~~~-~dg~i~vw~~~~~--~~~~~~~-~~~------------------------------~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 111 YVLSGS-DDLTVKLWNWENN--WALEQTF-EGH------------------------------EHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp EEEEEE-TTSEEEEEEGGGT--SEEEEEE-ECC------------------------------SSCEEEEEEETTEEEEE
T ss_pred EEEEEc-CCCEEEEEECCCC--ceEEEEE-cCC------------------------------CCcEEEEEEEcCCCCEE
Confidence 999888 6889999999532 1222222 121 01467899999 88888
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
++++.
T Consensus 157 ~~~~~ 161 (814)
T 3mkq_A 157 ASGCL 161 (814)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 88764
No 137
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.04 E-value=1.5e-08 Score=90.58 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=74.8
Q ss_pred ceEEEE----EcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 34 MVTDIL----ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 34 ~p~~va----~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
....++ ++|++++|+++.. +|.|.+||+... +....... .
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~---~~~~~~~~--------------------------------~ 209 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYD-NGDIKLFDLRNM---ALRWETNI--------------------------------K 209 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEET-TSEEEEEETTTT---EEEEEEEC--------------------------------S
T ss_pred ceEEEEEEeccCCCCCEEEEEcc-CCeEEEEECccC---ceeeecCC--------------------------------C
Confidence 455666 7899999998875 789999999652 22211111 1
Q ss_pred CCceEEEEcc---CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412 110 GSSQMFQLSL---DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL 186 (290)
Q Consensus 110 ~gPr~vafsP---dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~ 186 (290)
.....++|+| +++++++++. ++ .+..++... ...+......... ........++
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~---------------dg-~i~i~d~~~---~~~~~~~~~~~~~----~~~~~v~~~~ 266 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSL---------------EG-KFHVFDMRT---QHPTKGFASVSEK----AHKSTVWQVR 266 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEES---------------TT-EEEEEEEEE---EETTTEEEEEEEE----CCSSCEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECC---------------CC-eEEEEeCcC---CCcccceeeeccC----CCcCCEEEEE
Confidence 4678899999 9999998765 22 344444433 1111111100000 1224678899
Q ss_pred EccCCC-EEEEEeCCCCcEEEEEecCC
Q psy11412 187 ISLDDR-YLYTSNWMHGDIRQYDIRDT 212 (290)
Q Consensus 187 ~SpDGr-~Lyvs~r~~~~V~v~Dv~d~ 212 (290)
++|||+ +|+++. .++.|.+||+...
T Consensus 267 ~~~~~~~~l~~~~-~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 267 HLPQNRELFLTAG-GAGGLHLWKYEYP 292 (357)
T ss_dssp EETTEEEEEEEEE-TTSEEEEEEEECC
T ss_pred ECCCCCcEEEEEe-CCCcEEEeecCCC
Confidence 999999 566665 7899999999653
No 138
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.03 E-value=1.7e-08 Score=89.93 Aligned_cols=118 Identities=10% Similarity=0.133 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|||||++|++++. +++|++||+... ..+.+..+. ++ .....
T Consensus 11 ~V~~~~~s~~g~~las~s~-D~~v~iw~~~~~-~~~~~~~l~-gH------------------------------~~~V~ 57 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSS-DKTIKIFEVEGE-THKLIDTLT-GH------------------------------EGPVW 57 (297)
T ss_dssp CEEEEEECTTSSEEEEEET-TSCEEEEEBCSS-CBCCCEEEC-CC------------------------------SSCEE
T ss_pred ceEEEEECCCCCEEEEEeC-CCEEEEEecCCC-CcEEEEEEc-cc------------------------------cCCeE
Confidence 5789999999999998875 899999999642 222232221 11 14567
Q ss_pred EEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC-
Q psy11412 114 MFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD- 190 (290)
Q Consensus 114 ~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD- 190 (290)
.++|+|+ |++|+.++. + +.+.+|++.... ...+.. ..+ ....+..++|+|+
T Consensus 58 ~v~~s~~~~g~~l~s~s~---------------D-~~v~iWd~~~~~-~~~~~~-----~~~----h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSY---------------D-GKVMIWKEENGR-WSQIAV-----HAV----HSASVNSVQWAPHE 111 (297)
T ss_dssp EEEECCGGGCSEEEEEET---------------T-TEEEEEEBSSSC-BCCCEE-----ECC----CSSCEEEEEECCGG
T ss_pred EEEecCCCcCCEEEEEcC---------------C-CEEEEEEcCCCc-eEEEEE-----eec----CCCceeEEEeCcCC
Confidence 8999864 888887664 2 244445542200 000110 000 1235778999998
Q ss_pred -CCEEEEEeCCCCcEEEEEecC
Q psy11412 191 -DRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 191 -Gr~Lyvs~r~~~~V~v~Dv~d 211 (290)
|++|+++. .+++|.+||+..
T Consensus 112 ~g~~l~s~s-~d~~v~~wd~~~ 132 (297)
T 2pm7_B 112 YGPMLLVAS-SDGKVSVVEFKE 132 (297)
T ss_dssp GCSEEEEEE-TTSEEEEEEBCS
T ss_pred CCcEEEEEE-CCCcEEEEEecC
Confidence 89998888 689999999964
No 139
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.03 E-value=1.1e-07 Score=87.97 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=59.4
Q ss_pred CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCc---------------eEeeEE---eeC-cee---cCCCceEEec
Q psy11412 180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP---------------VLVGQI---FLG-GKI---QSDSGVTVID 237 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~---------------~~v~~i---~~G-g~~---~~~~~v~~~~ 237 (290)
..+..++|+|||++|+++ .++.|.+||+...... ..+..+ +.| ..+ ..|++|.+||
T Consensus 178 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 456789999999998876 5899999999621110 001111 112 111 5678899998
Q ss_pred CCCCCCCC-Ccceeecccc----------cCCcceEEEccCCCEEEEEcC-CCCCCC
Q psy11412 238 DPELDKQP-DPVIIKGRRF----------TGSSQMFQLSLDGKRIYVSSS-LFSPWD 282 (290)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~----------~~~P~~~a~sPDG~~L~Van~-~~~~~~ 282 (290)
........ ....+.+..- .+....++|+|||++|++++. ...-||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd 312 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWD 312 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEe
Confidence 76532100 0112222210 014689999999999998865 333444
No 140
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.9e-08 Score=90.39 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=96.5
Q ss_pred CCceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 32 PAMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 32 ~~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
...+..++++|+ |++|+++.. ++.|.+||+......... .+ .++ .
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~-~~-~~~------------------------------~ 147 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASS-DGKVSVVEFKENGTTSPI-II-DAH------------------------------A 147 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEET-TSEEEEEECCTTSCCCEE-EE-ECC------------------------------T
T ss_pred CcceEEEEeCCCCCCCEEEEecC-CCcEEEEecCCCCceeeE-Ee-cCC------------------------------C
Confidence 346889999999 999988875 899999999764222211 11 110 1
Q ss_pred CCceEEEEcc-------------CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcccc
Q psy11412 110 GSSQMFQLSL-------------DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKY 176 (290)
Q Consensus 110 ~gPr~vafsP-------------dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~ 176 (290)
.....++|+| +++++++++. ++ .+.+++... ........ ....+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg-~i~i~d~~~---~~~~~~~~-~~~~~--- 204 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA---------------DN-LVKIWKYNS---DAQTYVLE-STLEG--- 204 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEET---------------TS-CEEEEEEET---TTTEEEEE-EEECC---
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeC---------------CC-eEEEEEecC---CCcceeeE-EEEec---
Confidence 4577899999 7998888765 22 333344322 11000000 00000
Q ss_pred CCCCceeEEEEccC---CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412 177 PARSMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR 253 (290)
Q Consensus 177 ~~~~~~~~i~~SpD---Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (290)
.......++|+|| |++|+++. .++.|.+||+.......... +....
T Consensus 205 -h~~~v~~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~---------------------------- 253 (379)
T 3jrp_A 205 -HSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKT-LLKEE---------------------------- 253 (379)
T ss_dssp -CSSCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEE-ESSSS----------------------------
T ss_pred -ccCcEeEEEECCCCCCCCeEEEEe-CCCEEEEEeCCCCCccceee-eeccc----------------------------
Confidence 1245778999999 88888887 68999999996432211111 11100
Q ss_pred cccCCcceEEEccCCCEEEEEcC
Q psy11412 254 RFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 254 ~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
...+....++|+|||++|++++.
T Consensus 254 ~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 254 KFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp CCSSCEEEEEECSSSCCEEEEES
T ss_pred cCCCcEEEEEEcCCCCEEEEecC
Confidence 00124688999999999998865
No 141
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.5e-08 Score=89.62 Aligned_cols=119 Identities=9% Similarity=0.094 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|+|||++|++++. +|.|.+|++... ..+.+..+..+ ....
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~-~~~~~~~~~~h-------------------------------~~~v 58 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSS-DKTIKIFEVEGE-THKLIDTLTGH-------------------------------EGPV 58 (379)
T ss_dssp CCEEEEEECSSSSEEEEEET-TSCEEEEEEETT-EEEEEEEECCC-------------------------------SSCE
T ss_pred ccEEEEEEcCCCCEEEEEEC-CCcEEEEecCCC-cceeeeEecCC-------------------------------CCcE
Confidence 35789999999999998875 789999999642 23333222111 1457
Q ss_pred eEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 113 QMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 113 r~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
..++|+|+ +++|++++. ++ .+.+|++..... ..+.... ........++|+|+
T Consensus 59 ~~~~~~~~~~~~~l~s~~~---------------dg-~v~iwd~~~~~~-~~~~~~~---------~~~~~v~~~~~~~~ 112 (379)
T 3jrp_A 59 WRVDWAHPKFGTILASCSY---------------DG-KVLIWKEENGRW-SQIAVHA---------VHSASVNSVQWAPH 112 (379)
T ss_dssp EEEEECCGGGCSEEEEEET---------------TS-CEEEEEEETTEE-EEEEEEC---------CCSSCEEEEEECCG
T ss_pred EEEEeCCCCCCCEEEEecc---------------CC-EEEEEEcCCCce-eEeeeec---------CCCcceEEEEeCCC
Confidence 88999988 999998765 22 344454432100 0111100 01245788999999
Q ss_pred --CCEEEEEeCCCCcEEEEEecC
Q psy11412 191 --DRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 191 --Gr~Lyvs~r~~~~V~v~Dv~d 211 (290)
|++|+++. .++.|.+||+..
T Consensus 113 ~~~~~l~~~~-~d~~i~v~d~~~ 134 (379)
T 3jrp_A 113 EYGPLLLVAS-SDGKVSVVEFKE 134 (379)
T ss_dssp GGCSEEEEEE-TTSEEEEEECCT
T ss_pred CCCCEEEEec-CCCcEEEEecCC
Confidence 99999988 689999999964
No 142
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=7.7e-09 Score=96.23 Aligned_cols=169 Identities=12% Similarity=0.138 Sum_probs=98.6
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCC---CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412 33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRD---TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 108 (290)
Q Consensus 33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d---~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 108 (290)
+.+..++|+| ||++|++++. +|+|++||+.. ....+.... .++
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~--~~h------------------------------ 110 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSD-QGVIKIWNLKEIIVGEVYSSSLT--YDC------------------------------ 110 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEET-TSEEEEEEHHHHHTTCCCSCSEE--EEC------------------------------
T ss_pred CceEEEEECCCCCCEEEEecC-CceEEEeECcccccCcccceeee--ccC------------------------------
Confidence 4688999999 9999988875 89999999864 211111111 110
Q ss_pred CCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcccc-C--CCCceeEE
Q psy11412 109 TGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKY-P--ARSMVTDI 185 (290)
Q Consensus 109 g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~-~--~~~~~~~i 185 (290)
...+..++|+|++++|++++. + +.+.++++......+.+.......+....+ + .......+
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~---------------d-g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 174 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSK---------------D-GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM 174 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEET---------------T-SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeC---------------C-CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEE
Confidence 146788999999999998765 1 233333332100000000000000000000 0 11233344
Q ss_pred E--EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412 186 L--ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 263 (290)
Q Consensus 186 ~--~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a 263 (290)
. +++||++|+++. .++.|.+||+.. .+.+..+..-. + .+....++
T Consensus 175 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~---~~~~~~~~~~~--------------------h---------~~~v~~~~ 221 (437)
T 3gre_A 175 RAFVNEEKSLLVALT-NLSRVIIFDIRT---LERLQIIENSP--------------------R---------HGAVSSIC 221 (437)
T ss_dssp EEEECSSCEEEEEEE-TTSEEEEEETTT---CCEEEEEECCG--------------------G---------GCCEEEEE
T ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCC---CeeeEEEccCC--------------------C---------CCceEEEE
Confidence 4 779999999888 689999999954 33344332210 0 12578899
Q ss_pred EccCCCEEEEEcC--CCCCCCc
Q psy11412 264 LSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 264 ~sPDG~~L~Van~--~~~~~~~ 283 (290)
|+|+|++|++++. .+.-||-
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEET
T ss_pred ECCCCCEEEEEcCCCeEEEEEc
Confidence 9999999999865 4555653
No 143
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.02 E-value=2.3e-08 Score=92.66 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=109.4
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccc-c-----------
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK-I----------- 80 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~-~----------- 80 (290)
.+.++..++..... ...-...+..++++|||++|+++.. +|.|.+||+.+.. .+..+..... +
T Consensus 116 ~lw~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~l~ 190 (401)
T 4aez_A 116 YVWNADSGSVSALA-ETDESTYVASVKWSHDGSFLSVGLG-NGLVDIYDVESQT---KLRTMAGHQARVGCLSWNRHVLS 190 (401)
T ss_dssp EEEETTTCCEEEEE-ECCTTCCEEEEEECTTSSEEEEEET-TSCEEEEETTTCC---EEEEECCCSSCEEEEEEETTEEE
T ss_pred EEeeCCCCcEeEee-ecCCCCCEEEEEECCCCCEEEEECC-CCeEEEEECcCCe---EEEEecCCCCceEEEEECCCEEE
Confidence 44555554443332 1112446889999999999998875 7899999997532 2222211100 0
Q ss_pred --cCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee
Q psy11412 81 --QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI 158 (290)
Q Consensus 81 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~ 158 (290)
+..+.+.+.+....... .....+. ......++|+|+|++|++++. ++ .+.+++...
T Consensus 191 ~~~~dg~i~i~d~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~s~~~---------------d~-~v~iwd~~~-- 248 (401)
T 4aez_A 191 SGSRSGAIHHHDVRIANHQ--IGTLQGH--SSEVCGLAWRSDGLQLASGGN---------------DN-VVQIWDARS-- 248 (401)
T ss_dssp EEETTSEEEEEETTSSSCE--EEEEECC--SSCEEEEEECTTSSEEEEEET---------------TS-CEEEEETTC--
T ss_pred EEcCCCCEEEEecccCcce--eeEEcCC--CCCeeEEEEcCCCCEEEEEeC---------------CC-eEEEccCCC--
Confidence 01222333222110000 0001111 246788999999999998765 22 333344322
Q ss_pred ecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeC--CCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEe
Q psy11412 159 QRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNW--MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 236 (290)
Q Consensus 159 ~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~ 236 (290)
...+.... ........++++|+|+.|+++.- .++.|.+||+.. .+.+..+..++
T Consensus 249 -~~~~~~~~---------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---~~~~~~~~~~~----------- 304 (401)
T 4aez_A 249 -SIPKFTKT---------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDAGS----------- 304 (401)
T ss_dssp -SSEEEEEC---------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---CCEEEEEECSS-----------
T ss_pred -CCccEEec---------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---CCEEEEEeCCC-----------
Confidence 11111100 01234678999999988888763 489999999864 34444444333
Q ss_pred cCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412 237 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS 275 (290)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van 275 (290)
....++|+|+|+.|+++.
T Consensus 305 ---------------------~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 305 ---------------------QVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp ---------------------CEEEEEECSSSSEEEEEE
T ss_pred ---------------------cEEEEEECCCCCeEEEEe
Confidence 578899999999999975
No 144
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.02 E-value=4.5e-09 Score=91.27 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCEEEE-EeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLDDRYLYT-SNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyv-a~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.|+++++++||+ ||+ ++..++.|.+|+.... ..... ... ....|
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~-~~~~~---~~~------------------------------~~~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGST-GTTVL---PFN------------------------------GLYQP 69 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC------EEC---CCC------------------------------SCCSC
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCc-ccceE---eeC------------------------------CcCCc
Confidence 899999999998 888 8777889999985321 11110 000 01478
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++|+++++|+ ||+++. .+. +..++... ....... ......+.+|+++|||+
T Consensus 70 ~~i~~~~~g~-l~v~~~-~~~---------------i~~~d~~~----~~~~~~~--------~~~~~~p~~i~~~~~g~ 120 (270)
T 1rwi_B 70 QGLAVDGAGT-VYVTDF-NNR---------------VVTLAAGS----NNQTVLP--------FDGLNYPEGLAVDTQGA 120 (270)
T ss_dssp CCEEECTTCC-EEEEET-TTE---------------EEEECTTC----SCCEECC--------CCSCSSEEEEEECTTCC
T ss_pred ceeEECCCCC-EEEEcC-CCE---------------EEEEeCCC----ceEeeee--------cCCcCCCcceEECCCCC
Confidence 8999999998 888764 221 11111100 0000000 01114578999999998
Q ss_pred EEEEEeCCCCcEEEEEe
Q psy11412 193 YLYTSNWMHGDIRQYDI 209 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv 209 (290)
||+++..++.|.+|+.
T Consensus 121 -l~v~~~~~~~i~~~~~ 136 (270)
T 1rwi_B 121 -VYVADRGNNRVVKLAA 136 (270)
T ss_dssp -EEEEEGGGTEEEEECT
T ss_pred -EEEEECCCCEEEEEEC
Confidence 8999877888998853
No 145
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.01 E-value=1.5e-08 Score=100.88 Aligned_cols=154 Identities=18% Similarity=0.321 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++|+|||++|++++. +++|++||+... ..+..+ .++ .....
T Consensus 432 ~v~~v~~s~~g~~l~sgs~-Dg~v~vwd~~~~---~~~~~~-~~h------------------------------~~~v~ 476 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSW-DGELRLWDLAAG---VSTRRF-VGH------------------------------TKDVL 476 (694)
T ss_dssp CEEEEEECTTSSEEEEEET-TSEEEEEETTTT---EEEEEE-ECC------------------------------SSCEE
T ss_pred cEEEEEECCCCCEEEEEeC-CCcEEEEECCCC---cceeEE-eCC------------------------------CCCEE
Confidence 5778999999999988875 899999999652 333222 121 14578
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC--
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD-- 191 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG-- 191 (290)
.++|+|+|++|+.++. ++ .+.+|+... ..... +... .. ........++|+|++
T Consensus 477 ~~~~s~~~~~l~s~s~---------------D~-~i~iwd~~~---~~~~~-~~~~-~~----~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 477 SVAFSLDNRQIVSASR---------------DR-TIKLWNTLG---ECKYT-ISEG-GE----GHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEECTTSSCEEEEET---------------TS-CEEEECTTS---CEEEE-ECSS-TT----SCSSCEEEEEECSCSSS
T ss_pred EEEEeCCCCEEEEEeC---------------CC-EEEEEECCC---Cccee-eccC-CC----CCCCcEEEEEEeCCCCc
Confidence 8999999999988765 22 333343211 00000 0000 00 012357789999998
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
..|+++. .+++|.+||+.. .+.+..+ .+. .+....++|+|||++|
T Consensus 532 ~~l~s~s-~d~~v~vwd~~~---~~~~~~~-~~h------------------------------~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 532 PTIVSAS-WDKTVKVWNLSN---CKLRSTL-AGH------------------------------TGYVSTVAVSPDGSLC 576 (694)
T ss_dssp CEEEEEE-TTSCEEEEETTT---CCEEEEE-CCC------------------------------SSCEEEEEECTTSSEE
T ss_pred ceEEEEe-CCCeEEEEECCC---CcEEEEE-cCC------------------------------CCCEEEEEEeCCCCEE
Confidence 4666666 689999999964 2232222 111 1247889999999999
Q ss_pred EEEcC--CCCCCC
Q psy11412 272 YVSSS--LFSPWD 282 (290)
Q Consensus 272 ~Van~--~~~~~~ 282 (290)
++++. .+.-||
T Consensus 577 ~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 577 ASGGKDGVVLLWD 589 (694)
T ss_dssp EEEETTSBCEEEE
T ss_pred EEEeCCCeEEEEE
Confidence 99865 555665
No 146
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.00 E-value=6.7e-08 Score=85.82 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=105.3
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCCeEEEEEcCCCCCceeee-EEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 34 MVTDILISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVG-QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 34 ~p~~va~SpD-Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~-~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.+..|+|+|+ +++|+++.. +++|++||+.......... ....++ ...
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l~~h------------------------------~~~ 88 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRGH------------------------------SHF 88 (340)
T ss_dssp CEEEEEECTTCTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEECCC------------------------------SSC
T ss_pred CEEEEEEeCCCCCEEEEEcC-CCeEEEEECCCCCcccceeeEEEeCC------------------------------CCC
Confidence 5789999998 578877764 8999999997532221111 011110 146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
+..++|+|||++|++++. ++ .+..++... ...... ..........+.+++++
T Consensus 89 V~~~~~s~dg~~l~s~~~---------------d~-~i~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~ 140 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSW---------------DG-TLRLWDLTT---GTTTRR---------FVGHTKDVLSVAFSSDN 140 (340)
T ss_dssp EEEEEECTTSSEEEEEET---------------TS-EEEEEETTT---TEEEEE---------EECCSSCEEEEEECTTS
T ss_pred EEEEEECCCCCEEEEEcc---------------cc-cceEEeecc---cceeee---------ecCCCCceeEEEEeecC
Confidence 788999999999998765 12 222122111 000000 00011345568899999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCc--------eEeeEEee---C-ce----ecCCCceEEecCCCCCCCCCcceeecccc
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHP--------VLVGQIFL---G-GK----IQSDSGVTVIDDPELDKQPDPVIIKGRRF 255 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~--------~~v~~i~~---G-g~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (290)
++|+++. .++.+.+||+...... ..+..+.. + .. -..+++|.+++...... ...+.+.
T Consensus 141 ~~l~s~s-~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~h-- 214 (340)
T 4aow_A 141 RQIVSGS-RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---KTNHIGH-- 214 (340)
T ss_dssp SCEEEEE-TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---EEEECCC--
T ss_pred ccceeec-CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---eeEecCC--
Confidence 9998887 6889999997432110 01111110 0 00 14577788888654210 0111121
Q ss_pred cCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 256 TGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 256 ~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
.+....++|+|||++|++++. .+.-||
T Consensus 215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 134688999999999999865 344444
No 147
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.00 E-value=1.1e-08 Score=92.00 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=107.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
+.+..++|+|||++|+++.. +++|++||+... ....+..+. ++ ....
T Consensus 14 ~~V~~v~~s~~g~~lasgs~-D~~v~lwd~~~~-~~~~~~~l~-gH------------------------------~~~V 60 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSS-DRSVKIFDVRNG-GQILIADLR-GH------------------------------EGPV 60 (316)
T ss_dssp CCEEEEEECGGGCEEEEEET-TTEEEEEEEETT-EEEEEEEEE-CC------------------------------SSCE
T ss_pred CeEEEeeEcCCCCEEEEEeC-CCeEEEEEecCC-CcEEEEEEc-CC------------------------------CccE
Confidence 35789999999999998875 899999999652 112222221 21 1457
Q ss_pred eEEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 113 QMFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 113 r~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
..++|+| +|++|+.++. ++ .+.+|+..... ...+.. ..+ ....+..++|+||
T Consensus 61 ~~v~~~~~~~~~~l~s~s~---------------D~-~v~iWd~~~~~-~~~~~~-----~~~----h~~~V~~v~~~p~ 114 (316)
T 3bg1_A 61 WQVAWAHPMYGNILASCSY---------------DR-KVIIWREENGT-WEKSHE-----HAG----HDSSVNSVCWAPH 114 (316)
T ss_dssp EEEEECCGGGSSCEEEEET---------------TS-CEEEECCSSSC-CCEEEE-----ECC----CSSCCCEEEECCT
T ss_pred EEEEeCCCCCCCEEEEEEC---------------CC-EEEEEECCCCc-ceEEEE-----ccC----CCCceEEEEECCC
Confidence 8899986 4888887764 22 33334432100 000110 000 1234678999998
Q ss_pred --CCEEEEEeCCCCcEEEEEecCCCCceE-------------e-----------------------eEEeeCceecCCCc
Q psy11412 191 --DRYLYTSNWMHGDIRQYDIRDTAHPVL-------------V-----------------------GQIFLGGKIQSDSG 232 (290)
Q Consensus 191 --Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~-------------v-----------------------~~i~~Gg~~~~~~~ 232 (290)
|++|+++. .+++|.+||+........ + ..+-+| ..|++
T Consensus 115 ~~g~~lasgs-~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~D~~ 190 (316)
T 3bg1_A 115 DYGLILACGS-SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG---GCDNL 190 (316)
T ss_dssp TTCSCEEEEC-SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC---BTTSB
T ss_pred CCCcEEEEEc-CCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe---cCCCe
Confidence 88888777 689999999864321100 0 011222 36788
Q ss_pred eEEecCCCCCCCCCcceeecccccCCcceEEEccCC----CEEEEEcC--CCCCCC
Q psy11412 233 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDG----KRIYVSSS--LFSPWD 282 (290)
Q Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG----~~L~Van~--~~~~~~ 282 (290)
|++|+............+.+.. +..+.++|+|++ ++|+.++. .+.-|+
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~--~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHS--DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCS--SCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred EEEEEeCCCCccceeeecccCC--CceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 9999864211000001122221 347899999997 78888755 455564
No 148
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.00 E-value=2.3e-08 Score=89.40 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=77.9
Q ss_pred CceEEEEEcCC----CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412 33 AMVTDILISLD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 108 (290)
Q Consensus 33 ~~p~~va~SpD----Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 108 (290)
..+..++|+|+ |++|++++. +|.|.+||+.+. +.+..+...
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~---~~~~~~~~~------------------------------- 114 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGS-RGIIRIINPITM---QCIKHYVGH------------------------------- 114 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEET-TCEEEEECTTTC---CEEEEEESC-------------------------------
T ss_pred CcEEEEEeccCCCCCCCEEEEecC-CCEEEEEEchhc---eEeeeecCC-------------------------------
Confidence 46889999999 668887775 899999998652 333322211
Q ss_pred CCCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412 109 TGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI 187 (290)
Q Consensus 109 g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~ 187 (290)
......++|+| +++.|++++. ++ .+.+++... .+.+..+.. .. .....+..+++
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~---------------dg-~i~iwd~~~---~~~~~~~~~--~~----~~~~~v~~~~~ 169 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSK---------------DH-ALRLWNIQT---DTLVAIFGG--VE----GHRDEVLSADY 169 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEET---------------TS-CEEEEETTT---TEEEEEECS--TT----SCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeC---------------CC-eEEEEEeec---CeEEEEecc--cc----cccCceeEEEE
Confidence 14678899999 9999988765 12 333344322 111111100 00 12246788999
Q ss_pred ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 188 SLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 188 SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|||++|+++. .++.|.+||+..
T Consensus 170 ~~~~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 170 DLLGEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp CTTSSEEEEEE-TTSCEEEEESCS
T ss_pred CCCCCEEEEec-CCCCEEEEECCC
Confidence 99999999888 688999999853
No 149
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2.6e-09 Score=103.88 Aligned_cols=130 Identities=11% Similarity=0.029 Sum_probs=77.5
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.|..|+|+| ++..||++....+.|+++|..+. ....+ +..+ . ..-..|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l--~~~~-~---------------------------~~~~~p 188 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSP--LNIN-T---------------------------IPTNRI 188 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEE--ECCT-T---------------------------SSCSBE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEE--EccC-c---------------------------cccCCC
Confidence 699999999 68999999887778999987542 12221 1111 0 001469
Q ss_pred eEEEE-------ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEE
Q psy11412 113 QMFQL-------SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDI 185 (290)
Q Consensus 113 r~vaf-------sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i 185 (290)
++|+| +++|++||+++......+. ...+..++. .........+.. -.++....|.++
T Consensus 189 ~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~---------~~~V~~i~r---~~~G~~~~~~~~----~~v~~~~~p~gi 252 (496)
T 3kya_A 189 RSIAFNKKIEGYADEAEYMIVAIDYDGKGDE---------SPSVYIIKR---NADGTFDDRSDI----QLIAAYKQCNGA 252 (496)
T ss_dssp EEEEECCCBTTTBCTTCEEEEEECCCTTGGG---------EEEEEEEEC---CTTSCCSTTSCE----EEEEEESCCCCE
T ss_pred cEEEEeecccccCCCCCEEEEEeCCCCCccc---------CceEEEEec---CCCCceeecccc----eeeccCCCceEE
Confidence 99999 9999999998763210000 000111110 000000000000 001111356779
Q ss_pred EEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 186 LISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 186 ~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
+++|++++||++++.++.|..||+.
T Consensus 253 avdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 253 TIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEcCCCCeEEEEECCCCEEEEEecc
Confidence 9999999999999999999999985
No 150
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.00 E-value=2e-08 Score=94.69 Aligned_cols=154 Identities=11% Similarity=0.062 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.++++++.+..||+++...+.|..+++...........+... .-..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~------------------------------~~~~ 160 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------------------------------DIQA 160 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS------------------------------SCSC
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC------------------------------CCCC
Confidence 4579999999999999999998999999987531100000001000 0157
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
|.+|++++.++.||+++.....+.+... ++... ..+. . .....|.+|+++|.+
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~-----~g~~~-----------~~l~--~---------~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKR-----------KTLF--R---------ENGSKPRAIVVDPVH 213 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECT-----TTCSE-----------EEEE--E---------CSSCCEEEEEEETTT
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeC-----CCCce-----------EEEE--e---------CCCCCcceEEEeccc
Confidence 9999999999999998763222221110 11100 0000 0 012458899999999
Q ss_pred CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
++||+++++. +.|..++++- ...+.+. ..+. .+|++++|+|++++
T Consensus 214 g~ly~td~~~~~~I~~~~~dG-~~~~~~~--~~~l-------------------------------~~P~glavd~~~~~ 259 (400)
T 3p5b_L 214 GFMYWTDWGTPAKIKKGGLNG-VDIYSLV--TENI-------------------------------QWPNGITLDLLSGR 259 (400)
T ss_dssp TEEEEEECSSSCCEEEEETTS-CSCEEEE--CSSC-------------------------------SCEEEEEEETTTTE
T ss_pred CeEEEEeCCCCCEEEEEeCCC-CccEEEE--ECCC-------------------------------CceEEEEEEeCCCE
Confidence 9999999874 7888887742 1111111 1111 27999999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||+++.
T Consensus 260 lY~aD~ 265 (400)
T 3p5b_L 260 LYWVDS 265 (400)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999975
No 151
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.99 E-value=1e-08 Score=96.88 Aligned_cols=153 Identities=10% Similarity=0.144 Sum_probs=93.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|++|+++++|+ ||+++...+.|++||... + .+. .+... +..|+
T Consensus 132 ~P~~la~d~~g~-lyv~d~~~~~I~~id~~~-g--~~~-~~~~~-------------------------------~~~~~ 175 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQRDDPRVRLISVDD-N--KVT-TVHPG-------------------------------FKGGK 175 (409)
T ss_dssp CEEEEEECSTTE-EEEEETTTTEEEEEETTT-T--EEE-EEEET-------------------------------CCBCB
T ss_pred CceEEEEeCCCC-EEEEecCCCcEEEEECCC-C--EEE-Eeecc-------------------------------CCCCc
Confidence 799999999998 999998889999999854 1 221 11111 14567
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccCCC
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLDDR 192 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpDGr 192 (290)
++|+|+|++||+++...+ ..+..++... ......+ +.. .+ ....+.+++++|++.
T Consensus 176 -ia~~~~g~~l~~~d~~~~--------------~~I~~~d~~~---~~~~~~~--g~~----~~~~~~~p~~iav~p~~g 231 (409)
T 3hrp_A 176 -PAVTKDKQRVYSIGWEGT--------------HTVYVYMKAS---GWAPTRI--GQL----GSTFSGKIGAVALDETEE 231 (409)
T ss_dssp -CEECTTSSEEEEEBSSTT--------------CEEEEEEGGG---TTCEEEE--EEC----CTTSCSCCCBCEECTTSS
T ss_pred -eeEecCCCcEEEEecCCC--------------ceEEEEEcCC---CceeEEe--eec----cchhcCCcEEEEEeCCCC
Confidence 999999999999876221 0221122110 0000000 000 01 124567899999878
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc-eEEEccCCCEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ-MFQLSLDGKRI 271 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~a~sPDG~~L 271 (290)
.||++. .++.|..||.... ....++....-+. .+..|+ +++|+|++.+|
T Consensus 232 ~lyv~d-~~~~I~~~d~~~~-~~~~~~~~~~~g~----------------------------~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 232 WLYFVD-SNKNFGRFNVKTQ-EVTLIKQLELSGS----------------------------LGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp EEEEEC-TTCEEEEEETTTC-CEEEEEECCCCSC----------------------------CCCSSCCEEEEETTTTEE
T ss_pred eEEEEE-CCCcEEEEECCCC-CEEEEecccccCC----------------------------CCCCccccEEEeCCCCEE
Confidence 899977 4788999987532 2222221111010 011467 99999999999
Q ss_pred EEEcC
Q psy11412 272 YVSSS 276 (290)
Q Consensus 272 ~Van~ 276 (290)
|+++.
T Consensus 282 yv~d~ 286 (409)
T 3hrp_A 282 YMSDQ 286 (409)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99975
No 152
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.99 E-value=1.4e-08 Score=89.23 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=87.8
Q ss_pred CceEEEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 33 AMVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~-~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
..|+++++++.+..||+++.. ++.|.+|+. + .+.+..+..+ ....
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~---g~~~~~~~~~------------------------------~~~~ 122 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y---GQFVRKFGAT------------------------------ILQH 122 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECT-T---SCEEEEECTT------------------------------TCSC
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C---CcEEEEecCc------------------------------cCCC
Confidence 379999996445568888864 789999983 3 2222222111 0147
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
|++++++|+|+ +|+++...+. +..++.. .+.+..+.. . .....|.+|+++|||
T Consensus 123 ~~~i~~~~~g~-l~v~~~~~~~---------------i~~~~~~----g~~~~~~~~---~----~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 123 PRGVTVDNKGR-IIVVECKVMR---------------VIIFDQN----GNVLHKFGC---S----KHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EEEEEECTTSC-EEEEETTTTE---------------EEEECTT----SCEEEEEEC---T----TTCSSEEEEEECSSS
T ss_pred ceEEEEeCCCC-EEEEECCCCE---------------EEEEcCC----CCEEEEeCC---C----CccCCcEEEEECCCC
Confidence 89999999997 8887652221 2112110 000110000 0 011357899999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
+ ||+++..++.|.+||.. ...+..+...+. -..|..++++|||+ |
T Consensus 176 ~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~g~-----------------------------~~~p~~i~~d~~G~-l 220 (286)
T 1q7f_A 176 E-IFISDNRAHCVKVFNYE----GQYLRQIGGEGI-----------------------------TNYPIGVGINSNGE-I 220 (286)
T ss_dssp E-EEEEEGGGTEEEEEETT----CCEEEEESCTTT-----------------------------SCSEEEEEECTTCC-E
T ss_pred C-EEEEECCCCEEEEEcCC----CCEEEEEccCCc-----------------------------cCCCcEEEECCCCC-E
Confidence 7 89998788999999863 223333322110 02699999999996 5
Q ss_pred EEEc
Q psy11412 272 YVSS 275 (290)
Q Consensus 272 ~Van 275 (290)
||++
T Consensus 221 ~v~~ 224 (286)
T 1q7f_A 221 LIAD 224 (286)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 153
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=98.98 E-value=3.4e-08 Score=88.19 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCEEEEEeCC---CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 33 AMVTDILISLDDRYLYTSNWM---HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~---~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
..+..++|+|||.++++++.. ++.|.+||+... ...... ..++ .
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-~~~~~~--~~~~------------------------------~ 65 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-DLKLLR--EIEK------------------------------A 65 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-SEEEEE--EEEE------------------------------S
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-ccccee--eecc------------------------------c
Confidence 367899999999888766644 899999999753 222221 1111 1
Q ss_pred CCceEEEEccC---CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecc-cccccCccccCccccCCCCceeEE
Q psy11412 110 GSSQMFQLSLD---GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRN-EMRSMPLSSLGSWKYPARSMVTDI 185 (290)
Q Consensus 110 ~gPr~vafsPd---G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~~~~~~~i 185 (290)
.....++|+|+ |++|++.+. ++ .+.+++... .+ .+..+. + .......+
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~---------------dg-~i~iwd~~~---~~~~~~~~~-----~----~~~~v~~~ 117 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDF---------------GG-NLHIWNLEA---PEMPVYSVK-----G----HKEIINAI 117 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEET---------------TS-CEEEECTTS---CSSCSEEEC-----C----CSSCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecC---------------CC-eEEEEeCCC---CCccEEEEE-----e----cccceEEE
Confidence 46788999999 698888765 12 233333322 11 111100 0 11234455
Q ss_pred ------EEccCCCEEEEEeCCCCcEEEEEecCCCC-ceEe-----------eEE-------eeCcee---cCCCceEEec
Q psy11412 186 ------LISLDDRYLYTSNWMHGDIRQYDIRDTAH-PVLV-----------GQI-------FLGGKI---QSDSGVTVID 237 (290)
Q Consensus 186 ------~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~-~~~v-----------~~i-------~~Gg~~---~~~~~v~~~~ 237 (290)
+|+|||++|+++. .++.|.+||+..... ...+ ..+ +.+..+ ..++.|.+++
T Consensus 118 ~~~~~~~~s~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 196 (357)
T 3i2n_A 118 DGIGGLGIGEGAPEIVTGS-RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFD 196 (357)
T ss_dssp EEESGGGCC-CCCEEEEEE-TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEE
T ss_pred eeccccccCCCccEEEEEe-CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEE
Confidence 5689999999888 688999999965331 1111 111 111111 4567788888
Q ss_pred CCCCCCCCCcceeecccccCCcceEEEcc---CCCEEEEEcC
Q psy11412 238 DPELDKQPDPVIIKGRRFTGSSQMFQLSL---DGKRIYVSSS 276 (290)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~P~~~a~sP---DG~~L~Van~ 276 (290)
...... . .-....+....++|+| +|++|++++.
T Consensus 197 ~~~~~~----~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 197 LRNMAL----R--WETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp TTTTEE----E--EEEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred CccCce----e--eecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 654211 1 1111234679999999 9999999865
No 154
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.98 E-value=1.9e-08 Score=91.49 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.++++++.++.||+++...+.|.+++.+. ...+.+. .. ....|
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~---~~------------------------------~~~~P 122 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF---RE------------------------------NGSKP 122 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE---EC------------------------------TTCCE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE---EC------------------------------CCCCc
Confidence 37899999999999999999899999999742 2222211 10 01579
Q ss_pred eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
++++++|++++||+++... ..+.++. .+|... ..+.. ..-..|.+|+++|++
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~-----~dG~~~-----------~~~~~-----------~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGG-----LNGVDI-----------YSLVT-----------ENIQWPNGITLDLLS 175 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEE-----TTSCCE-----------EEEEC-----------SSCSCEEEEEEETTT
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEc-----CCCCCe-----------EEEEE-----------CCCCCceEEEEeccC
Confidence 9999999999999987521 1111100 011100 00100 011467899999999
Q ss_pred CEEEEEeCCCCcEEEEEec
Q psy11412 192 RYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~ 210 (290)
++||+++...+.|.++|..
T Consensus 176 ~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp TEEEEEETTTTEEEEEETT
T ss_pred CEEEEEECCCCeEEEEecC
Confidence 9999999989999999984
No 155
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.98 E-value=4.7e-08 Score=87.64 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|.+++|+|||++||+++...+.+-++... .++..+..+. ..... ..+....+.+|++++
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~---~~g~~~~~~~------~~~~~----------~~~~~~~~~~i~~d~ 242 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIALE---DDGVTIQPFG------ATIPY----------YFTGHEGPDSCCIDS 242 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC---TTSSSEEEEE------EEEEE----------ECCSSSEEEEEEEBT
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEec---CCCcCccccc------ceEEE----------ecCCCCCCCceEECC
Confidence 3688999999999999986522222111110 0111110000 00000 011113577899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK 269 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~ 269 (290)
||+ ||+++..++.|.+||.. .+.+..+..+... .|. -..|..++|+|||+
T Consensus 243 ~G~-l~v~~~~~~~v~~~d~~----g~~~~~~~~~~~~-----------------------~g~--~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 243 DDN-LYVAMYGQGRVLVFNKR----GYPIGQILIPGRD-----------------------EGH--MLRSTHPQFIPGTN 292 (333)
T ss_dssp TCC-EEEEEETTTEEEEECTT----SCEEEEEECTTGG-----------------------GTC--SCBCCEEEECTTSC
T ss_pred CCC-EEEEEcCCCEEEEECCC----CCEEEEEEcCCCc-----------------------ccc--ccCcceEEECCCCC
Confidence 997 68887677899999762 2344444433200 000 01488999999999
Q ss_pred EEEEEcC
Q psy11412 270 RIYVSSS 276 (290)
Q Consensus 270 ~L~Van~ 276 (290)
+||+++.
T Consensus 293 ~L~v~~~ 299 (333)
T 2dg1_A 293 QLIICSN 299 (333)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9998865
No 156
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=98.97 E-value=9.5e-08 Score=89.09 Aligned_cols=209 Identities=9% Similarity=0.154 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeeccc----ccC----------CCceEEecCCCCcCCCC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK----IQS----------DSGVTVIDDPELDKQPD 99 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~----~~~----------~~~~~v~~~~~~~~~~~ 99 (290)
.+.+|+|+|||++|+++.. +|+|.+||+... +.+..+..+.. +.. .+.+.+.+...... .
T Consensus 149 ~V~sv~fspdg~~lasgs~-Dg~v~iWd~~~~---~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~--~ 222 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH--H 222 (420)
T ss_dssp CEEEEEECTTSSEEEEEET-TSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC--E
T ss_pred cEEEEEECCCCCEEEEEEC-CCeEEEEEcCCC---cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce--e
Confidence 5889999999999998875 899999999753 33322211100 000 11111111111000 0
Q ss_pred cceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC
Q psy11412 100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR 179 (290)
Q Consensus 100 ~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 179 (290)
.....+. ......+.++|+|++++.... ++ .+.+++.... .... ...... ....
T Consensus 223 ~~~~~~h--~~~~~~~~~~~~g~~l~s~~~---------------D~-~v~i~~~~~~---~~~~-~~~~~~----~~~~ 276 (420)
T 4gga_A 223 VATLSGH--SQEVCGLRWAPDGRHLASGGN---------------DN-LVNVWPSAPG---EGGW-VPLQTF----TQHQ 276 (420)
T ss_dssp EEEEECC--SSCEEEEEECTTSSEEEEEET---------------TS-CEEEEESSCC---SSCS-CCSEEE----CCCS
T ss_pred eEEeccc--ccceeeeeecCCCCeeeeeec---------------cc-cceEEeeccc---cccc-eeeeee----cccC
Confidence 0001111 145678999999999988654 12 2222332210 0000 000000 0012
Q ss_pred CceeEEEEccCCCEEEEE--eCCCCcEEEEEecCCCCceEeeEEeeCcee-----------------cCCCceEEecCCC
Q psy11412 180 SMVTDILISLDDRYLYTS--NWMHGDIRQYDIRDTAHPVLVGQIFLGGKI-----------------QSDSGVTVIDDPE 240 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs--~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~-----------------~~~~~v~~~~~~~ 240 (290)
..+..++++|++..++++ .-.++.|.+||+.. ...+..+..+..+ ..++.|.+|+...
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 456789999987766543 22468999999854 2333333222111 2577899998654
Q ss_pred CCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 241 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
.. + ...+.|.. +....++|+|||++|+.+.. ++.-|+
T Consensus 354 ~~--~-v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 354 MA--K-VAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp CC--E-EEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred Cc--E-EEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 21 1 11233322 35789999999999998865 566675
No 157
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.96 E-value=1e-07 Score=85.41 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|+++++++||+ ||+++.+.+.|.+|+.+ +..+.+.....+ .....
T Consensus 85 ~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~-----------------------------~~~~~ 132 (305)
T 3dr2_A 85 TAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD--GQAHLLVGRYAG-----------------------------KRLNS 132 (305)
T ss_dssp CSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEECEETT-----------------------------EECSC
T ss_pred CCccceeeECCCCC-EEEEECCCCEEEEECCC--CCEEEEEeccCC-----------------------------CccCC
Confidence 34789999999998 77888777889999863 333322111000 00146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcc---eeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWD---KEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS 188 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d---~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S 188 (290)
|+.++++|||+ +|+++...+... ...... ......+..++..+ ..+.. +.....+.+++||
T Consensus 133 ~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~-~~~~~~v~~~d~~~----g~~~~----------~~~~~~p~gl~~s 196 (305)
T 3dr2_A 133 PNDLIVARDGA-IWFTDPPFGLRKPSQGCPADP-ELAHHSVYRLPPDG----SPLQR----------MADLDHPNGLAFS 196 (305)
T ss_dssp CCCEEECTTSC-EEEECCSGGGSCGGGSCCCCC-SSSCEEEEEECSSS----CCCEE----------EEEESSEEEEEEC
T ss_pred CCCEEECCCCC-EEEeCcCCCcccccccccccc-ccCCCeEEEEcCCC----CcEEE----------EecCCCCcceEEc
Confidence 88899999998 666542100000 000000 00011122122100 00110 0011346789999
Q ss_pred cCCCEEEEEeCCC-----CcEEEEEecCCC--CceEeeEE----eeCceecC--------CCceEEecCCCCCCCCCcce
Q psy11412 189 LDDRYLYTSNWMH-----GDIRQYDIRDTA--HPVLVGQI----FLGGKIQS--------DSGVTVIDDPELDKQPDPVI 249 (290)
Q Consensus 189 pDGr~Lyvs~r~~-----~~V~v~Dv~d~~--~~~~v~~i----~~Gg~~~~--------~~~v~~~~~~~~~~~~~~~~ 249 (290)
|||+.||+++... +.|.+||+.... ..+..... +.|-.+.+ .+.|.+++..+. .
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~-------~ 269 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQ-------L 269 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSC-------E
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCC-------E
Confidence 9999999998653 789999986421 00111100 01111122 233555654331 1
Q ss_pred eecccccCCcceEEEccCCCEEEEEcC
Q psy11412 250 IKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 250 ~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
+.-+.....|..++|+|||++||+++.
T Consensus 270 ~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 270 LGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred EEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 111222336899999999999999865
No 158
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=98.96 E-value=4.9e-08 Score=90.40 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..++++|||++|+++ .+++|.+||+... ...+..+.... ... .+. .....
T Consensus 179 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~--~~~~~~~~~~~---------------~~~-------~~~--~~~v~ 230 (447)
T 3dw8_B 179 HINSISINSDYETYLSA--DDLRINLWHLEIT--DRSFNIVDIKP---------------ANM-------EEL--TEVIT 230 (447)
T ss_dssp CCCEEEECTTSSEEEEE--CSSEEEEEETTEE--EEEEEEEECCC---------------SSG-------GGC--CCCEE
T ss_pred ceEEEEEcCCCCEEEEe--CCCeEEEEECCCC--Cceeeeeeccc---------------ccc-------ccc--CcceE
Confidence 56789999999999876 4899999998632 12222111100 000 000 14678
Q ss_pred EEEEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeeccc----ccccCccccC--ccccC-CCCceeEE
Q psy11412 114 MFQLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNE----MRSMPLSSLG--SWKYP-ARSMVTDI 185 (290)
Q Consensus 114 ~vafsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~----i~~~p~~~~~--~~~~~-~~~~~~~i 185 (290)
.++|+|+| ++|++++. ++ .+.+++... ... +..+...... .-.+. .......+
T Consensus 231 ~~~~~p~~~~~l~s~~~---------------dg-~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (447)
T 3dw8_B 231 AAEFHPNSCNTFVYSSS---------------KG-TIRLCDMRA---SALCDRHSKLFEEPEDPSNRSFFSEIISSISDV 291 (447)
T ss_dssp EEEECSSCTTEEEEEET---------------TS-CEEEEETTT---CSSSCTTCEEECCC-----CCHHHHHTTCEEEE
T ss_pred EEEECCCCCcEEEEEeC---------------CC-eEEEEECcC---CccccceeeEeccCCCccccccccccCceEEEE
Confidence 89999999 88887665 12 233333221 110 0100000000 00000 00157789
Q ss_pred EEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 186 LISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 186 ~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|+|||++|+++.. +.|.+||+..
T Consensus 292 ~~s~~g~~l~~~~~--~~v~iwd~~~ 315 (447)
T 3dw8_B 292 KFSHSGRYMMTRDY--LSVKVWDLNM 315 (447)
T ss_dssp EECTTSSEEEEEES--SEEEEEETTC
T ss_pred EECCCCCEEEEeeC--CeEEEEeCCC
Confidence 99999999998874 8999999964
No 159
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.96 E-value=4.1e-09 Score=104.56 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=40.0
Q ss_pred eEEEEcc--CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412 183 TDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 260 (290)
Q Consensus 183 ~~i~~Sp--DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~ 260 (290)
..++||| ||++||++++ ++.+.+|++... ...+..+..+. ....
T Consensus 313 ~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~--~~~~~~l~~~~-------------------------------~~v~ 358 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTT--GRLIRQVTKGE-------------------------------WEVT 358 (706)
T ss_dssp SCCEECTTCSSEEEEEECT-TSSCEEEEEETT--SCEEEECCCSS-------------------------------SCEE
T ss_pred CCceeecCCCCEEEEEEcc-CCccEEEEEECC--CCEEEecCCCC-------------------------------eEEE
Confidence 4589999 9999998884 567888887521 12222221111 0233
Q ss_pred e-EEEccCCCEEEEEcCC
Q psy11412 261 M-FQLSLDGKRIYVSSSL 277 (290)
Q Consensus 261 ~-~a~sPDG~~L~Van~~ 277 (290)
. ++|||||++||+++..
T Consensus 359 ~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEECTTSSEEEEEESS
T ss_pred eeeEEcCCCCEEEEEecC
Confidence 3 7999999999888653
No 160
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.96 E-value=2.6e-08 Score=88.77 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=108.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++|+|||++|++++. +|.|.+|++............. ++ ...+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~-~~------------------------------~~~v 59 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW-DGSLTVYKFDIQAKNVDLLQSL-RY------------------------------KHPL 59 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET-TSEEEEEEEETTTTEEEEEEEE-EC------------------------------SSCE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCeEEEEEeCCCCccccceeee-ec------------------------------CCce
Confidence 36789999999999998875 7999999997643111221111 11 1467
Q ss_pred eEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeeccee-eeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 113 QMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEI-MEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 113 r~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
..++|+|+|+ +|++++. ++ .+.+++. .. .. ...+. + .........++++|
T Consensus 60 ~~~~~~~~~~~~l~~~~~---------------dg-~i~~wd~~~~---~~-~~~~~-----~--~~~~~~v~~l~~~~- 111 (342)
T 1yfq_A 60 LCCNFIDNTDLQIYVGTV---------------QG-EILKVDLIGS---PS-FQALT-----N--NEANLGICRICKYG- 111 (342)
T ss_dssp EEEEEEESSSEEEEEEET---------------TS-CEEEECSSSS---SS-EEECB-----S--CCCCSCEEEEEEET-
T ss_pred EEEEECCCCCcEEEEEcC---------------CC-eEEEEEeccC---Cc-eEecc-----c--cCCCCceEEEEeCC-
Confidence 8899999999 8988765 22 3333433 22 11 11100 0 00124567899999
Q ss_pred CCEEEEEeCCCCcEEEEEecC---------CCCc------eEeeEEeeC-cee---cCCCceEEecCCC-CCCCCCccee
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRD---------TAHP------VLVGQIFLG-GKI---QSDSGVTVIDDPE-LDKQPDPVII 250 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d---------~~~~------~~v~~i~~G-g~~---~~~~~v~~~~~~~-~~~~~~~~~~ 250 (290)
++.|+++. .++.|.+||+.. .... ..+..+... ..+ ..++.|.+++... .. .+....
T Consensus 112 ~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~- 188 (342)
T 1yfq_A 112 DDKLIAAS-WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED-DNGTIE- 188 (342)
T ss_dssp TTEEEEEE-TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT-CCCEEE-
T ss_pred CCEEEEEc-CCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc-ccceee-
Confidence 99999888 689999999853 1100 011111110 001 4577899998765 21 111111
Q ss_pred ecccccCCcceEEEcc-CCCEEEEEcC
Q psy11412 251 KGRRFTGSSQMFQLSL-DGKRIYVSSS 276 (290)
Q Consensus 251 ~~~~~~~~P~~~a~sP-DG~~L~Van~ 276 (290)
.......++.++|+| ||++|++++.
T Consensus 189 -~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 189 -ESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp -ECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred -ecCCCCceeEEEECCCCCCEEEEEec
Confidence 111123579999999 9999999876
No 161
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=98.96 E-value=1.7e-08 Score=90.24 Aligned_cols=158 Identities=10% Similarity=0.121 Sum_probs=96.6
Q ss_pred ceEEEEEcCC---C-CEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 34 MVTDILISLD---D-RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 34 ~p~~va~SpD---G-r~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
.+.+++|+|+ + ..++++. ++|.|.+||+........+...... ...
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~-----------------------------~~~ 69 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATV-GSNRVTLYECHSQGEIRLLQSYVDA-----------------------------DAD 69 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEE-ETTEEEEEEECGGGCEEEEEEEECS-----------------------------CTT
T ss_pred ceEEEEEecccCCCCceEEEEC-CCCEEEEEEcCCCcEEEeeeecccc-----------------------------CCC
Confidence 5789999985 4 4454444 4679999999753332232211100 011
Q ss_pred CCceEEEEccC----CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEE
Q psy11412 110 GSSQMFQLSLD----GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDI 185 (290)
Q Consensus 110 ~gPr~vafsPd----G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i 185 (290)
.....++|+|+ |++|++++. ++ .+.+++... .+.+..+. + .......+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~---------------dg-~i~v~d~~~---~~~~~~~~-----~----~~~~i~~~ 121 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGS---------------RG-IIRIINPIT---MQCIKHYV-----G----HGNAINEL 121 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEET---------------TC-EEEEECTTT---CCEEEEEE-----S----CCSCEEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecC---------------CC-EEEEEEchh---ceEeeeec-----C----CCCcEEEE
Confidence 46788999999 667887665 22 333343322 11111100 0 12457789
Q ss_pred EEcc-CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee-CceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412 186 LISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL-GGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 263 (290)
Q Consensus 186 ~~Sp-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~-Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a 263 (290)
+|+| |+++|+++. .++.|.+||+.. .+.+..+.. .+ + .+.+..++
T Consensus 122 ~~~~~~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~~~~--------------------~---------~~~v~~~~ 168 (366)
T 3k26_A 122 KFHPRDPNLLLSVS-KDHALRLWNIQT---DTLVAIFGGVEG--------------------H---------RDEVLSAD 168 (366)
T ss_dssp EECSSCTTEEEEEE-TTSCEEEEETTT---TEEEEEECSTTS--------------------C---------SSCEEEEE
T ss_pred EECCCCCCEEEEEe-CCCeEEEEEeec---CeEEEEeccccc--------------------c---------cCceeEEE
Confidence 9999 999999888 689999999954 233333211 00 0 12578999
Q ss_pred EccCCCEEEEEcC--CCCCCC
Q psy11412 264 LSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 264 ~sPDG~~L~Van~--~~~~~~ 282 (290)
|+|+|++|+++.. .+.-|+
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d 189 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWR 189 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEE
Confidence 9999999999865 455554
No 162
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.96 E-value=2.6e-08 Score=95.86 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=98.8
Q ss_pred Cc-eEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCC-----CceeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412 33 AM-VTDILISL--DDRYLYTSNWMHGDIRQYDIRDTA-----HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 104 (290)
Q Consensus 33 ~~-p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~-----~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (290)
.. +..++|+| ||++|++++. +|+|++||+.... ..+.+..+...
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~--------------------------- 115 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGDE-SGKVIVWGWTFDKESNSVEVNVKSEFQVL--------------------------- 115 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEET-TSEEEEEEEEEEGGGTEEEEEEEEEEECC---------------------------
T ss_pred CceEEEEEECcCCCCCEEEEecC-CCEEEEEeCCCCcccccccccccchhhcc---------------------------
Confidence 35 89999999 9999998875 8999999995320 11222221111
Q ss_pred ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412 105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD 184 (290)
Q Consensus 105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~ 184 (290)
......++|+|||++|+++..... ....+..++. .+.+..+. + .......
T Consensus 116 ----~~~v~~~~~s~~~~~l~~~~~~~~------------~~~~v~~~d~-----~~~~~~~~-----~----~~~~v~~ 165 (615)
T 1pgu_A 116 ----AGPISDISWDFEGRRLCVVGEGRD------------NFGVFISWDS-----GNSLGEVS-----G----HSQRINA 165 (615)
T ss_dssp ----SSCEEEEEECTTSSEEEEEECCSS------------CSEEEEETTT-----CCEEEECC-----S----CSSCEEE
T ss_pred ----cccEEEEEEeCCCCEEEEeccCCC------------CccEEEEEEC-----CCcceeee-----c----CCccEEE
Confidence 146788999999999998765110 0012222331 11111100 1 1245778
Q ss_pred EEEccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412 185 ILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 263 (290)
Q Consensus 185 i~~SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a 263 (290)
++|+|||+ .|+++. .++.|.+||+.. .+.+..+..-.. .+.....++
T Consensus 166 ~~~~~~~~~~l~~~~-~d~~v~vwd~~~---~~~~~~~~~~~~----------------------------~~~~v~~~~ 213 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVG-DDGSVVFYQGPP---FKFSASDRTHHK----------------------------QGSFVRDVE 213 (615)
T ss_dssp EEECSSSSCEEEEEE-TTTEEEEEETTT---BEEEEEECSSSC----------------------------TTCCEEEEE
T ss_pred EEECCCCCcEEEEEe-CCCcEEEEeCCC---cceeeeecccCC----------------------------CCceEEEEE
Confidence 99999998 566665 789999999753 344443321110 001467899
Q ss_pred EccC-CCEEEEEcC--CCCCCC
Q psy11412 264 LSLD-GKRIYVSSS--LFSPWD 282 (290)
Q Consensus 264 ~sPD-G~~L~Van~--~~~~~~ 282 (290)
|+|| |++|++++. .+.-|+
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEE
Confidence 9999 999998865 445554
No 163
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.96 E-value=2e-09 Score=107.28 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=43.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC--CceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTA--HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~--~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
+.+++|||||++|+++.. ++|.+||+.... ....+. . ....+
T Consensus 111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~----~------------------------------~~~~~ 154 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT----H------------------------------GEGFA 154 (741)
T ss_dssp SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCC----C------------------------------SSSCE
T ss_pred cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcc----c------------------------------CCccc
Confidence 568899999999998875 899999997531 121110 0 01457
Q ss_pred eEEEEccCCCEEEEEcC
Q psy11412 113 QMFQLSLDGKRIYVSSS 129 (290)
Q Consensus 113 r~vafsPdG~~lYv~ne 129 (290)
.+++|||||++|+.+..
T Consensus 155 ~~~~~SPDG~~la~~~~ 171 (741)
T 2ecf_A 155 TDAKLSPKGGFVSFIRG 171 (741)
T ss_dssp EEEEECTTSSEEEEEET
T ss_pred ccccCCCCCCEEEEEeC
Confidence 88999999998887654
No 164
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.96 E-value=3.2e-08 Score=87.04 Aligned_cols=65 Identities=8% Similarity=0.104 Sum_probs=46.1
Q ss_pred CceEEEEEcC--CCCEEEEEeCCCCeEEEEEcCCCCCc------eeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412 33 AMVTDILISL--DDRYLYTSNWMHGDIRQYDIRDTAHP------VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 104 (290)
Q Consensus 33 ~~p~~va~Sp--DGr~Lyva~~~~g~V~v~dv~d~~~~------~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (290)
..+..++|+| |+++|+++.. +|+|++||+...... +.+..+...
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--------------------------- 109 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASY-DKTVKLWEEDPDQEECSGRRWNKLCTLNDS--------------------------- 109 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEET-TSCEEEEEECTTSCTTSSCSEEEEEEECCC---------------------------
T ss_pred CcEEEEEEcCCCCCCEEEEEcC-CCeEEEEecCCCcccccccCcceeeeeccc---------------------------
Confidence 4678999999 6999998875 899999999753211 112111100
Q ss_pred ccccCCCceEEEEccC--CCEEEEEcC
Q psy11412 105 GRRFTGSSQMFQLSLD--GKRIYVSSS 129 (290)
Q Consensus 105 ~~~~g~gPr~vafsPd--G~~lYv~ne 129 (290)
......++|+|+ ++++++++.
T Consensus 110 ----~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 110 ----KGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp ----SSCEEEEEECCGGGCSEEEEEET
T ss_pred ----CCceeEEEEcCCCCCcEEEEecC
Confidence 146788999999 999998765
No 165
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.95 E-value=4.1e-08 Score=98.11 Aligned_cols=165 Identities=9% Similarity=0.127 Sum_probs=106.2
Q ss_pred EEEecCCCccCCCCCCCCCCC--ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEec
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPA--MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVID 90 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~--~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~ 90 (290)
..|++........+ ++++ .|.+|++++++.+||+++...+.|..++++. ...+.+ +..+
T Consensus 18 ~~i~l~~~~~~~~~---~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-~~~~~v--~~~g------------- 78 (628)
T 4a0p_A 18 RRISLETNNNNVAI---PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG-SALEHV--VEFG------------- 78 (628)
T ss_dssp EEEESSCTTCEEEC---CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE--ECSS-------------
T ss_pred EEEECCCCCcceEE---EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC-CCcEEE--EeCC-------------
Confidence 56677654433322 3433 7999999999999999999999999988753 222221 1111
Q ss_pred CCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccc
Q psy11412 91 DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSS 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~ 170 (290)
-..|.+||+++.++.||+++...+.+.+... +|... ..+. .
T Consensus 79 ------------------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~-----dG~~~-----------~~l~---~-- 119 (628)
T 4a0p_A 79 ------------------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-----DGQHR-----------QVLV---W-- 119 (628)
T ss_dssp ------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEET-----TSTTC-----------EEEE---C--
T ss_pred ------------------CCCcceEEEEeCCCEEEEEECCCCEEEEEec-----CCCcE-----------EEEE---e--
Confidence 1469999999999999998763222222110 11100 0000 0
Q ss_pred cCccccCCCCceeEEEEccCCCEEEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcce
Q psy11412 171 LGSWKYPARSMVTDILISLDDRYLYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI 249 (290)
Q Consensus 171 ~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~ 249 (290)
..-..|.+|+++|...+||.++++ .+.|..++++ ....+.+. .+.
T Consensus 120 ------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~~~~l~---~~~------------------------ 165 (628)
T 4a0p_A 120 ------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTLV---PNV------------------------ 165 (628)
T ss_dssp ------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE---CSC------------------------
T ss_pred ------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCceEEEE---CCC------------------------
Confidence 012468899999988899999987 5788888763 22222221 111
Q ss_pred eecccccCCcceEEEccCCCEEEEEcC
Q psy11412 250 IKGRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 250 ~~~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
.+|++++|++++++||+++.
T Consensus 166 -------~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 166 -------GRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp -------SSEEEEEEETTTTEEEEEET
T ss_pred -------CCcceEEEccccCEEEEEEC
Confidence 27999999999999999976
No 166
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.93 E-value=2.3e-08 Score=88.46 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=45.1
Q ss_pred CceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412 180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 259 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P 259 (290)
..+.+|++++||+ ||+++..++.|.+||... .+.+..+.... ..|
T Consensus 226 ~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~---g~~~~~~~~~~-------------------------------~~~ 270 (314)
T 1pjx_A 226 GGADGMDFDEDNN-LLVANWGSSHIEVFGPDG---GQPKMRIRCPF-------------------------------EKP 270 (314)
T ss_dssp CEEEEEEEBTTCC-EEEEEETTTEEEEECTTC---BSCSEEEECSS-------------------------------SCE
T ss_pred CCCCceEECCCCC-EEEEEcCCCEEEEEcCCC---CcEeEEEeCCC-------------------------------CCc
Confidence 3578899999996 678876788999997632 22333333222 268
Q ss_pred ceEEEccCCCEEEEEcC
Q psy11412 260 QMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 260 ~~~a~sPDG~~L~Van~ 276 (290)
..++|+|||++||+++.
T Consensus 271 ~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEEECTTSSEEEEEET
T ss_pred eeEEECCCCCEEEEEeC
Confidence 99999999999999865
No 167
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.93 E-value=1.1e-08 Score=93.61 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.0
Q ss_pred CceeEEEEccCCCEEEEEeC---CCCcEEEEEec
Q psy11412 180 SMVTDILISLDDRYLYTSNW---MHGDIRQYDIR 210 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r---~~~~V~v~Dv~ 210 (290)
..+.+|+++|++.++|+++. .++.|.+||+.
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 35688999999889999998 78899999985
No 168
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.93 E-value=6.8e-09 Score=102.45 Aligned_cols=143 Identities=9% Similarity=-0.033 Sum_probs=77.4
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCC---Cc-CCCCcceeecc
Q psy11412 31 VPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE---LD-KQPDPVIIKGR 106 (290)
Q Consensus 31 v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~---~~-~~~~~~~~~~~ 106 (290)
+...+.+|++||||++++++. .+++|+ |... ++.+ . |+... --++.+.++.. .. ...........
T Consensus 14 ~~~~v~sv~~SpDG~~iASas-~D~TV~--d~~~---~~~l---~-gh~~~-v~~V~FsPdg~~~~~~~~~~~~~~~~~~ 82 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTF-PDISIG--QPKY---AKDI---N-CNSKN-LFHVKEFPLEFENKLDFELAQQNGLLNS 82 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECS-SSEEEE--EECC---CSCC---S-SBGGG-TEEEEEECCCCCCTTTTSCCCSSCSSTT
T ss_pred hhccEEEEEECCCCCEEEEEc-CCceee--cccc---ccee---c-CCCcc-EEEEEECCCCCcceEEEEeCCCceEeec
Confidence 344678999999999998775 478887 5322 2222 1 11100 00111112210 00 00000000000
Q ss_pred ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEE
Q psy11412 107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL 186 (290)
Q Consensus 107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~ 186 (290)
.....+..++|||||++|.+++. ++ .+.+|+... .+.... ....+ .......++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~---------------dg-~V~iwd~~~-----~l~~l~----~~~~~-~~~sv~sva 136 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSN---------------NG-NVSVFKDNK-----MLTNLD----SKGNL-SSRTYHCFE 136 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEET---------------TS-CEEEEETTE-----EEEECC----CSSCS-TTTCEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeC---------------CC-cEEEEeCCc-----eeeecc----CCCcc-ccccEEEEE
Confidence 11256889999999999998765 23 333344211 111100 00000 012467899
Q ss_pred EccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 187 ISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
|||||++|++++ .+++|.+||+..
T Consensus 137 fSPDG~~LAsgs-~DGtVkIWd~~~ 160 (588)
T 2j04_A 137 WNPIESSIVVGN-EDGELQFFSIRK 160 (588)
T ss_dssp ECSSSSCEEEEE-TTSEEEEEECCC
T ss_pred EcCCCCEEEEEc-CCCEEEEEECCC
Confidence 999999999999 689999999964
No 169
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.93 E-value=2.2e-08 Score=105.47 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=99.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++|||||++|++++. +|+|.+||+.+. +.+..+..+ ...+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~-d~~i~vw~~~~~---~~~~~~~~h-------------------------------~~~v 660 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGA-DKTLQVFKAETG---EKLLDIKAH-------------------------------EDEV 660 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSCEEEEETTTC---CEEEEECCC-------------------------------SSCE
T ss_pred ccEEEEEECCCCCEEEEEeC-CCeEEEEECCCC---CEEEEeccC-------------------------------CCCE
Confidence 46789999999999988874 889999999653 233222111 1467
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC--
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD-- 190 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD-- 190 (290)
..++|||||++|++++. + +.+.+|+..+ .+.+..+. + .......++|+|+
T Consensus 661 ~~~~~s~~~~~l~s~~~---------------d-~~v~vwd~~~---~~~~~~~~-----~----~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 661 LCCAFSSDDSYIATCSA---------------D-KKVKIWDSAT---GKLVHTYD-----E----HSEQVNCCHFTNKSN 712 (1249)
T ss_dssp EEEEECTTSSEEEEEET---------------T-SEEEEEETTT---CCEEEEEE-----C----CSSCEEEEEECSSSS
T ss_pred EEEEEecCCCEEEEEeC---------------C-CeEEEEECCC---CceEEEEc-----C----CCCcEEEEEEecCCC
Confidence 88999999999998765 2 2344444322 11222111 0 1245678999995
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
+.+|+++. .++.|.+||+.. ...+..+. +. .+....++|+|||++
T Consensus 713 ~~~l~sg~-~d~~v~vwd~~~---~~~~~~~~-~h------------------------------~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 713 HLLLATGS-NDFFLKLWDLNQ---KECRNTMF-GH------------------------------TNSVNHCRFSPDDEL 757 (1249)
T ss_dssp CCEEEEEE-TTSCEEEEETTS---SSEEEEEC-CC------------------------------SSCEEEEEECSSTTE
T ss_pred ceEEEEEe-CCCeEEEEECCC---cchhheec-CC------------------------------CCCEEEEEEecCCCE
Confidence 45666666 688999999854 22333221 11 125788999999999
Q ss_pred EEEEcC--CCCCCC
Q psy11412 271 IYVSSS--LFSPWD 282 (290)
Q Consensus 271 L~Van~--~~~~~~ 282 (290)
|+++.. .+.-|+
T Consensus 758 l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 758 LASCSADGTLRLWD 771 (1249)
T ss_dssp EEEEESSSEEEEEE
T ss_pred EEEEECCCeEEEEe
Confidence 999865 455565
No 170
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.93 E-value=4.6e-08 Score=100.24 Aligned_cols=154 Identities=11% Similarity=0.066 Sum_probs=97.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.+|++++.+.+||+++...+.|..+++...........+ +.. .-..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-i~~-----------------------------~l~~ 472 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISR-----------------------------DIQA 472 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS-----------------------------SCSC
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE-Eec-----------------------------CCCC
Confidence 3478999999999999999998999999988531100000000 110 0157
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
|.+||+++.++.||+++...+.|.+... +|... ..+. . .....|.+|+|+|.+
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~l-----dG~~~-----------~~l~---~--------~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADT-----KGVKR-----------KTLF---R--------ENGSKPRAIVVDPVH 525 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEET-----TSSSE-----------EEEE---E--------CTTCCEEEEEEETTT
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeC-----CCCeE-----------EEEE---e--------CCCCCcceEEEecCC
Confidence 9999999999999999763322221110 11100 0000 0 011358899999999
Q ss_pred CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
.+||+++++. +.|.++++. ....+.+. ..+. .+|++|+|+|++++
T Consensus 526 g~LYwtD~g~~~~I~~~~~d-G~~~~~lv--~~~l-------------------------------~~P~GLavD~~~~~ 571 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLN-GVDIYSLV--TENI-------------------------------QWPNGITLDLLSGR 571 (791)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCCEEEEE--CSSC-------------------------------SCEEEEEEETTTTE
T ss_pred CCEEEecCCCCCeEEEEecC-CCceEEEE--eCCC-------------------------------CCceEEEEecCCCe
Confidence 9999999987 788888774 21111111 1111 27999999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||++..
T Consensus 572 LYwaD~ 577 (791)
T 3m0c_C 572 LYWVDS 577 (791)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999975
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.93 E-value=5e-08 Score=86.43 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.+++++|||+ ||+++.+.+.|.+||..+. ..+.+.....+ .....
T Consensus 68 ~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~-----------------------------~~~~~ 116 (296)
T 3e5z_A 68 SHHQNGHCLNKQGH-LIACSHGLRRLERQREPGG-EWESIADSFEG-----------------------------KKLNS 116 (296)
T ss_dssp CSSEEEEEECTTCC-EEEEETTTTEEEEECSTTC-CEEEEECEETT-----------------------------EECCC
T ss_pred CCCcceeeECCCCc-EEEEecCCCeEEEEcCCCC-cEEEEeeccCC-----------------------------CCCCC
Confidence 34689999999998 5677776789999997542 22222110000 01146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCccee--ecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKE--IYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
|+.++++|+|+ +|+++...+..+.. .........+.+..++. ...+..+ ......+.++++||
T Consensus 117 ~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~---------~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 117 PNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----DGTLSAP---------IRDRVKPNGLAFLP 181 (296)
T ss_dssp CCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----TSCEEEE---------ECCCSSEEEEEECT
T ss_pred CCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECC-----CCCEEEe---------ecCCCCCccEEECC
Confidence 88899999998 56653200000000 00000000111211111 0111100 00123578899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCc-eEeeEE------eeCceecC--------CCceEEecCCCCCCCCCcceeeccc
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQI------FLGGKIQS--------DSGVTVIDDPELDKQPDPVIIKGRR 254 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~-~~v~~i------~~Gg~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (290)
||+.| +++..++.|.+||+...+.. .....+ +.+-.+.+ ++.|.+++..+ ..+.-..
T Consensus 182 dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g-------~~~~~~~ 253 (296)
T 3e5z_A 182 SGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDG-------DELGRVL 253 (296)
T ss_dssp TSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTS-------CEEEEEE
T ss_pred CCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCC-------CEEEEEE
Confidence 99999 88878899999999633332 111111 01111222 34455555432 1122222
Q ss_pred ccCCcceEEE-ccCCCEEEEEcC
Q psy11412 255 FTGSSQMFQL-SLDGKRIYVSSS 276 (290)
Q Consensus 255 ~~~~P~~~a~-sPDG~~L~Van~ 276 (290)
....|..++| +|||++||+++.
T Consensus 254 ~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 254 TPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp CSSCCCEEEEESTTSCEEEEEET
T ss_pred CCCCceeEEEECCCCCEEEEEcC
Confidence 2224999999 699999999875
No 172
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.92 E-value=2.9e-08 Score=90.45 Aligned_cols=180 Identities=9% Similarity=0.063 Sum_probs=95.8
Q ss_pred CceEEEEEc----CCCCE-EEEEeCCCCeEEEEEcCC------CCCceeee--EEeecccccCCCceEEecCCCCcCCCC
Q psy11412 33 AMVTDILIS----LDDRY-LYTSNWMHGDIRQYDIRD------TAHPVLVG--QIFLGGKIQSDSGVTVIDDPELDKQPD 99 (290)
Q Consensus 33 ~~p~~va~S----pDGr~-Lyva~~~~g~V~v~dv~d------~~~~~~~~--~i~~g~~~~~~~~~~v~~~~~~~~~~~ 99 (290)
..+..++++ |++++ |++++. +|.|.+||+.. ........ .+... .. ..
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~- 182 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDV-KGTTYIWKFHPFADESNSLTLNWSPTLELQGT--VE---------------SP- 182 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEET-TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE--EC---------------CS-
T ss_pred CcEEEEEEeeccCCCCceEEEEEeC-CCcEEEEeCCccccccccceeeccCcceeeee--ec---------------cc-
Confidence 568899999 99999 887765 79999999975 22222000 11000 00 00
Q ss_pred cceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCC
Q psy11412 100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPAR 179 (290)
Q Consensus 100 ~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 179 (290)
......+..++|+|+| ++++... ++.+.+++... .+.+..+... .+. ....
T Consensus 183 ------~~~~~~i~~~~~~~~~-~l~~~~~----------------dg~i~i~d~~~---~~~~~~~~~~--~~h-~~~~ 233 (397)
T 1sq9_A 183 ------MTPSQFATSVDISERG-LIATGFN----------------NGTVQISELST---LRPLYNFESQ--HSM-INNS 233 (397)
T ss_dssp ------SSSCCCCCEEEECTTS-EEEEECT----------------TSEEEEEETTT---TEEEEEEECC--C----CCC
T ss_pred ------cCCCCCceEEEECCCc-eEEEEeC----------------CCcEEEEECCC---CceeEEEecc--ccc-cccC
Confidence 0012467889999999 7776654 12333333321 1111111100 000 0002
Q ss_pred CceeEEEEccCCCEEEEEeCCC---CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc
Q psy11412 180 SMVTDILISLDDRYLYTSNWMH---GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 256 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r~~---~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (290)
.....++|+|||++|+++. .+ +.|.+||+.. .+.+..+..... |....+......
T Consensus 234 ~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~---~~~~~~~~~~~~------------------~~~~~~~~~~~~ 291 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEF---GERIGSLSVPTH------------------SSQASLGEFAHS 291 (397)
T ss_dssp CCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTT---CCEEEEECBC--------------------------CCBSBS
T ss_pred CccceEEECCCCCEEEEEe-cCCCCceEEEEECCC---CcccceeccCcc------------------cccccccccccC
Confidence 3567899999999999887 56 8999999864 233333322000 000000000001
Q ss_pred CCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 257 GSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 257 ~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
+....++|+|||++|++++. .+.-|+
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 25789999999999999864 344444
No 173
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.91 E-value=4.7e-08 Score=89.52 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+.++++++.+..||.++...+.|..++.......+.+ +..+ -..|.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--~~~~-------------------------------l~~p~ 82 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSG-------------------------------LLSPD 82 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE--EEEC-------------------------------CSCCC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE--EcCC-------------------------------CCCcc
Confidence 57789999999999999999999999987542111111 1111 14789
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
++++++.++.||+++...+.+.++.. +|... ..+. . .....|.+|+++|++++
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~-----dG~~~-----------~~l~-------~----~~~~~P~giavdp~~g~ 135 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNL-----DGSLR-----------KVLF-------W----QELDQPRAIALDPSSGF 135 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE-------C----SSCSSEEEEEEEGGGTE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEEC-----CCCcE-----------EEEE-------e----CCCCCccEEEEeCCCCE
Confidence 99999999999998763222211100 11000 0000 0 01246889999999999
Q ss_pred EEEEeCC-CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 194 LYTSNWM-HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 194 Lyvs~r~-~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
||+++++ .+.|..++.+ ....+.+. ..+. ..|++++|+|++++||
T Consensus 136 ly~td~~~~~~I~r~~~d-G~~~~~~~--~~~l-------------------------------~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 136 MYWTDWGEVPKIERAGMD-GSSRFIII--NSEI-------------------------------YWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEEEECSSSCEEEEEETT-SCSCEEEE--CSSC-------------------------------SCEEEEEEETTTTEEE
T ss_pred EEEEecCCCCEEEEEEcC-CCCeEEEE--ECCC-------------------------------CCccEEEEeccCCEEE
Confidence 9999986 5788888763 11111111 1111 2799999999999999
Q ss_pred EEcC
Q psy11412 273 VSSS 276 (290)
Q Consensus 273 Van~ 276 (290)
+++.
T Consensus 182 ~aD~ 185 (318)
T 3sov_A 182 WADA 185 (318)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9975
No 174
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=98.91 E-value=2.7e-08 Score=92.69 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=37.7
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc-eEEEccCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ-MFQLSLDG 268 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~a~sPDG 268 (290)
+|.++.++. .+++|.+||+.. .+.+.++. |.. +.+. .++|||||
T Consensus 294 sg~~lASgS-~DgTIkIWDl~t---Gk~l~tL~-gH~------------------------------~~vvs~vafSPDG 338 (356)
T 2w18_A 294 KDHCAAAIL-TSGTIAIWDLLL---GQCTALLP-PVS------------------------------DQHWSFVKWSGTD 338 (356)
T ss_dssp ETTEEEEEE-TTSCEEEEETTT---CSEEEEEC-CC--------------------------------CCCCEEEECSSS
T ss_pred CCCEEEEEc-CCCcEEEEECCC---CcEEEEec-CCC------------------------------CCeEEEEEECCCC
Confidence 366766665 689999999964 34444432 221 1234 48999999
Q ss_pred CEEEEEcC--CCCCCC
Q psy11412 269 KRIYVSSS--LFSPWD 282 (290)
Q Consensus 269 ~~L~Van~--~~~~~~ 282 (290)
++|+.++. ++.-||
T Consensus 339 ~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SEEEEECTTSCEEEEE
T ss_pred CEEEEEECCCcEEEec
Confidence 99999864 444444
No 175
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.91 E-value=5.3e-08 Score=86.75 Aligned_cols=157 Identities=11% Similarity=0.041 Sum_probs=92.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412 30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 108 (290)
Q Consensus 30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d-~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 108 (290)
.....+..++++|++ |+++. .++.|.+||+.. ....... .... .
T Consensus 148 ~~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~------------------------------~ 192 (342)
T 1yfq_A 148 KVKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTI--EESG------------------------------L 192 (342)
T ss_dssp SSCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCCCEE--EECS------------------------------C
T ss_pred eeCCceEEEEecCCc--EEEEe-CCCeEEEEECCcccccccee--eecC------------------------------C
Confidence 356688999999998 66665 478999999975 3221111 1111 0
Q ss_pred CCCceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee-e--cccccccCccc--cCccccCCCCce
Q psy11412 109 TGSSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-Q--RNEMRSMPLSS--LGSWKYPARSMV 182 (290)
Q Consensus 109 g~gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-~--~~~i~~~p~~~--~~~~~~~~~~~~ 182 (290)
...++.++|+| +|+++++.+.. + .+.+++..... . ......+.... ..+ .......
T Consensus 193 ~~~i~~i~~~~~~~~~l~~~~~d---------------g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 254 (342)
T 1yfq_A 193 KYQIRDVALLPKEQEGYACSSID---------------G-RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD--TNLAYPV 254 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETT---------------S-EEEEEECCTTCCSTTCTTCEEEECCCCCTTC--CSSCCCE
T ss_pred CCceeEEEECCCCCCEEEEEecC---------------C-cEEEEEEcCCCcccccccceeeecccccccc--cccceeE
Confidence 14678899999 99999987651 1 22222211100 0 00000000000 000 0001257
Q ss_pred eEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC-ceecCCCceEEecCCCCCCCCCcceeecccccCCcce
Q psy11412 183 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG-GKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM 261 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G-g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 261 (290)
..++|+|||++|+++. .++.|.+||+.+ .+.+..+..- . +....
T Consensus 255 ~~~~~s~~~~~l~~~~-~dg~i~vwd~~~---~~~~~~~~~~h~-------------------------------~~v~~ 299 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTAG-SDGIISCWNLQT---RKKIKNFAKFNE-------------------------------DSVVK 299 (342)
T ss_dssp EEEEECTTTCCEEEEE-TTSCEEEEETTT---TEEEEECCCCSS-------------------------------SEEEE
T ss_pred EEEEEcCCCCEEEEec-CCceEEEEcCcc---HhHhhhhhcccC-------------------------------CCceE
Confidence 7899999999999888 689999999854 3444433221 1 13466
Q ss_pred EEEccCCCEEEEEcC
Q psy11412 262 FQLSLDGKRIYVSSS 276 (290)
Q Consensus 262 ~a~sPDG~~L~Van~ 276 (290)
++ |||++|+++..
T Consensus 300 ~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 300 IA--CSDNILCLATS 312 (342)
T ss_dssp EE--ECSSEEEEEEE
T ss_pred ec--CCCCeEEEEec
Confidence 67 99999999865
No 176
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.90 E-value=1.6e-09 Score=109.49 Aligned_cols=170 Identities=10% Similarity=0.099 Sum_probs=102.9
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
.++++...++.... +....|.+|++++++.+||+++...+.|..+++...........+...
T Consensus 389 ~~id~~~~~~~~~~---~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--------------- 450 (699)
T 1n7d_A 389 RKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------------- 450 (699)
T ss_dssp CEECTTSCCEECCS---CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---------------
T ss_pred EEEeCCCCcceeee---ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---------------
Confidence 45566555544433 345578999999999999999998899999987531100000000000
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
....|.+|++++.++.||+++...+.+.+ ++... .. +..+ +.
T Consensus 451 ---------------~~~~P~glavD~~~g~LY~tD~~~~~I~v---------------~d~dg---~~-~~~l----~~ 492 (699)
T 1n7d_A 451 ---------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSV---------------ADTKG---VK-RKTL----FR 492 (699)
T ss_dssp ---------------CC--CCCEECCCSSSBCEECCTTTSCEEE---------------EBSSS---CC-EEEE----CC
T ss_pred ---------------CCCCcceEEEEeeCCcEEEEeccCCeEEE---------------EecCC---Cc-eEEE----Ee
Confidence 01468889999999999998763322221 11100 00 0000 00
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
.....|.+|+++|++++||+++++. +.|.++++.. ...+.+. ..+
T Consensus 493 ----~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~---~~~-------------------------- 538 (699)
T 1n7d_A 493 ----EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV---TEN-------------------------- 538 (699)
T ss_dssp ----CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES---CSS--------------------------
T ss_pred ----CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE---eCC--------------------------
Confidence 0113467899999999999999876 7888876632 1111111 001
Q ss_pred cccccCCcceEEEccCCCEEEEEcC
Q psy11412 252 GRRFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 252 ~~~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
-..|++|+|+|++++||+++.
T Consensus 539 ----l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 539 ----IQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp ----CSSCCCEEECTTTCCEEEEET
T ss_pred ----CCCccEEEEeccCCEEEEEec
Confidence 027999999999999999976
No 177
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.2e-07 Score=95.96 Aligned_cols=191 Identities=13% Similarity=0.127 Sum_probs=113.0
Q ss_pred CceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 33 AMVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 33 ~~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
+.+.+++|+|+ |++|++++. +|+|.+||+... ....+...... ..
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~-Dg~I~vwd~~~~-~~~~~~~~~~h-------------------------------~~ 100 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSY-DGKVLIWKEENG-RWSQIAVHAVH-------------------------------SA 100 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEET-TSCEEEEEEETT-EEEEEEEECCC-------------------------------SS
T ss_pred CceEEEEecCCCCCCEEEEEeC-CCeEEEEECCCC-cccccccccCC-------------------------------CC
Confidence 35789999998 999988875 899999999752 21222211110 14
Q ss_pred CceEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412 111 SSQMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS 188 (290)
Q Consensus 111 gPr~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S 188 (290)
....++|+|+ |+.+++++. + +.+.++++... ..... .... ........++++
T Consensus 101 ~V~~v~~sp~~~~~~l~sgs~---------------d-g~I~vwdl~~~---~~~~~---~~~~----~~~~~v~~l~~~ 154 (753)
T 3jro_A 101 SVNSVQWAPHEYGPLLLVASS---------------D-GKVSVVEFKEN---GTTSP---IIID----AHAIGVNSASWA 154 (753)
T ss_dssp CEEEEEECCGGGCSEEEEEET---------------T-SEEEEEECCSS---SCCCC---EEEE----CCSSCEEEEEEC
T ss_pred CeEEEEECCCCCCCEEEEEeC---------------C-CcEEEEEeecC---CCcce---eEee----cCCCceEEEEec
Confidence 6788999999 999998765 2 23433443221 00000 0000 112456789999
Q ss_pred c-------------CCCEEEEEeCCCCcEEEEEecCCCCc-eEeeE----------E---ee---Ccee---cCCCceEE
Q psy11412 189 L-------------DDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQ----------I---FL---GGKI---QSDSGVTV 235 (290)
Q Consensus 189 p-------------DGr~Lyvs~r~~~~V~v~Dv~d~~~~-~~v~~----------i---~~---Gg~~---~~~~~v~~ 235 (290)
| ||++|+++. .++.|.+||+...... ..+.. + +. |..+ ..|+.|.+
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred CcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 9 699999888 6899999999643211 11111 1 11 1111 45778889
Q ss_pred ecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 236 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
|+...................+....++|+|||++|++++. .+.-|+-
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 88655321111111111112345788999999999999865 4555653
No 178
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.89 E-value=1.7e-08 Score=106.24 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=81.9
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++.++..++..... .-...+..++++|+++.+ +++ .+|+|.+||+.+.. ....+...
T Consensus 1028 ~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~l~-~~~-~dg~v~vwd~~~~~---~~~~~~~~--------------- 1084 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLL-SWS-FDGTVKVWNVITGR---IERDFTCH--------------- 1084 (1249)
T ss_dssp EEEETTTTEEECCB---CCSSCEEEEEECSSSEEE-EEE-SSSEEEEEETTTTC---CCEEEECC---------------
T ss_pred EEEECCCCceEEEe---cCCCcEEEEEEcCCCcEE-EEE-CCCcEEEEECCCCc---eeEEEccc---------------
Confidence 45555554444322 334578899999988654 444 47899999997632 22222111
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
......++|+|||+++++++. ++ .+..++... ...+.. ..
T Consensus 1085 ----------------~~~v~~~~~s~d~~~l~s~s~---------------d~-~v~iwd~~~---~~~~~~-----l~ 1124 (1249)
T 3sfz_A 1085 ----------------QGTVLSCAISSDATKFSSTSA---------------DK-TAKIWSFDL---LSPLHE-----LK 1124 (1249)
T ss_dssp ----------------SSCCCCEEECSSSSSCEEECC---------------SS-CCCEECSSS---SSCSBC-----CC
T ss_pred ----------------CCcEEEEEECCCCCEEEEEcC---------------CC-cEEEEECCC---cceeee-----ec
Confidence 135677999999999998765 22 233333322 111111 00
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+ .......++|||||++|+++. .++.|.+||+.+
T Consensus 1125 ~----h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1125 G----HNGCVRCSAFSLDGILLATGD-DNGEIRIWNVSD 1158 (1249)
T ss_dssp C----CSSCEEEEEECSSSSEEEEEE-TTSCCCEEESSS
T ss_pred c----CCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCC
Confidence 1 123567899999999999988 688999999964
No 179
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=5.9e-08 Score=87.93 Aligned_cols=141 Identities=7% Similarity=0.052 Sum_probs=83.1
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++.|+..++..... .......+..++|+|||++|++++ .+|.|++||+....... ..+..++
T Consensus 152 ~~wd~~~~~~~~~~-~~~~~~~i~~~~~~pdg~~lasg~-~dg~i~iwd~~~~~~~~--~~~~~~h-------------- 213 (343)
T 3lrv_A 152 GFQSYEDDSQYIVH-SAKSDVEYSSGVLHKDSLLLALYS-PDGILDVYNLSSPDQAS--SRFPVDE-------------- 213 (343)
T ss_dssp EEEESSSSCEEEEE-CCCSSCCCCEEEECTTSCEEEEEC-TTSCEEEEESSCTTSCC--EECCCCT--------------
T ss_pred EEEECCCCcEEEEE-ecCCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCCCCc--cEEeccC--------------
Confidence 45566655442211 112233577899999999998776 48999999997643220 1111110
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
......++|+|+|++|+++++ + .+.+|++.. ...+..+......
T Consensus 214 ----------------~~~v~~l~fs~~g~~l~s~~~----------------~-~v~iwd~~~---~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 214 ----------------EAKIKEVKFADNGYWMVVECD----------------Q-TVVCFDLRK---DVGTLAYPTYTIP 257 (343)
T ss_dssp ----------------TSCEEEEEECTTSSEEEEEES----------------S-BEEEEETTS---STTCBSSCCCBC-
T ss_pred ----------------CCCEEEEEEeCCCCEEEEEeC----------------C-eEEEEEcCC---CCcceeecccccc
Confidence 146788999999999998764 1 233333322 1111111100000
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
..+. ....++|+|||++|+++..+++.|.+|++..
T Consensus 258 --~~~~--~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 258 --EFKT--GTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp --------CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred --cccc--cceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 0000 1135999999999999874489999999954
No 180
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=98.89 E-value=1.3e-08 Score=101.44 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++|+|||++|++++. +++|++||+... ....+...+ . .+ ....
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~-D~~i~iwd~~~~----~~~~~~~~~----~--------------~h---------~~~v 520 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASR-DRTIKLWNTLGE----CKYTISEGG----E--------------GH---------RDWV 520 (694)
T ss_dssp SCEEEEEECTTSSCEEEEET-TSCEEEECTTSC----EEEEECSST----T--------------SC---------SSCE
T ss_pred CCEEEEEEeCCCCEEEEEeC-CCEEEEEECCCC----cceeeccCC----C--------------CC---------CCcE
Confidence 35789999999999988775 899999997431 111111100 0 00 1357
Q ss_pred eEEEEccCC--CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 113 QMFQLSLDG--KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 113 r~vafsPdG--~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
..++|+|++ ..++..+. ++ .+.+++... .+.... ..+ .......++||||
T Consensus 521 ~~~~~~~~~~~~~l~s~s~---------------d~-~v~vwd~~~---~~~~~~-----~~~----h~~~v~~v~~spd 572 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASW---------------DK-TVKVWNLSN---CKLRST-----LAG----HTGYVSTVAVSPD 572 (694)
T ss_dssp EEEEECSCSSSCEEEEEET---------------TS-CEEEEETTT---CCEEEE-----ECC----CSSCEEEEEECTT
T ss_pred EEEEEeCCCCcceEEEEeC---------------CC-eEEEEECCC---CcEEEE-----EcC----CCCCEEEEEEeCC
Confidence 789999998 45655443 22 333344322 111111 001 1245778999999
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
|++|+++. .+++|.+||+.. .+.+..+... .....++|+|||.+
T Consensus 573 g~~l~sg~-~Dg~i~iwd~~~---~~~~~~~~~~--------------------------------~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 573 GSLCASGG-KDGVVLLWDLAE---GKKLYSLEAN--------------------------------SVIHALCFSPNRYW 616 (694)
T ss_dssp SSEEEEEE-TTSBCEEEETTT---TEEEECCBCS--------------------------------SCEEEEEECSSSSE
T ss_pred CCEEEEEe-CCCeEEEEECCC---CceEEEecCC--------------------------------CcEEEEEEcCCCcE
Confidence 99999888 689999999954 2333322111 14678999999999
Q ss_pred EEEEcC-CCCCCC
Q psy11412 271 IYVSSS-LFSPWD 282 (290)
Q Consensus 271 L~Van~-~~~~~~ 282 (290)
|+++.. .+.-||
T Consensus 617 l~~~~~~~i~iwd 629 (694)
T 3dm0_A 617 LCAATEHGIKIWD 629 (694)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEcCCCEEEEE
Confidence 988855 344444
No 181
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=98.89 E-value=1.7e-07 Score=85.00 Aligned_cols=199 Identities=13% Similarity=0.107 Sum_probs=109.0
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 32 PAMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 32 ~~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
.+.+..++|+| ||++|++++. +|.|.+||+................ .. . .. .. + -..
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~-~~-~--------~~--~~-------~--~~~ 100 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGS-DGVIVLYDLENSSRQSYYTCKAVCS-IG-R--------DH--PD-------V--HRY 100 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEET-TSCEEEEECCCCSSSSCEEECEEEE-EC-T--------TC--TT-------C--CSS
T ss_pred CCcEEEEEEecCCCCEEEEEcC-CCeEEEEECCCCcccceEecccccc-cc-c--------cc--cc-------c--CCC
Confidence 34678999999 9999998875 8899999997643222211100000 00 0 00 00 0 125
Q ss_pred CceEEEEcc-CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 111 SSQMFQLSL-DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 111 gPr~vafsP-dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
.+..++|+| +++.|++++. ++.+.+++... .+.+.. +........+.++|
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~----------------d~~i~iwd~~~---~~~~~~----------~~~~~~~~~~~~~~ 151 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSF----------------DKTLKVWDTNT---LQTADV----------FNFEETVYSHHMSP 151 (408)
T ss_dssp CEEEEEECTTCTTCEEEEET----------------TSEEEEEETTT---TEEEEE----------EECSSCEEEEEECS
T ss_pred cEEEEEEccCCCcEEEEEeC----------------CCeEEEeeCCC---Ccccee----------ccCCCceeeeEeec
Confidence 678899999 7777777654 12333343322 111111 00123456678888
Q ss_pred ---CCCEEEEEeCCCCcEEEEEecCCCCceE-------eeEE---eeCce-e---cCCCceEEecCCCCCCCC-------
Q psy11412 190 ---DDRYLYTSNWMHGDIRQYDIRDTAHPVL-------VGQI---FLGGK-I---QSDSGVTVIDDPELDKQP------- 245 (290)
Q Consensus 190 ---DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~-------v~~i---~~Gg~-~---~~~~~v~~~~~~~~~~~~------- 245 (290)
++++|+++. .++.|.+||+........ +..+ +.+.. + ..++.|.+|+........
T Consensus 152 ~~~~~~~~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 152 VSTKHCLVAVGT-RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SCSSCCEEEEEE-SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred CCCCCcEEEEEc-CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 555888887 688999999964321111 1111 11221 1 567789999875422000
Q ss_pred ----CcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 246 ----DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 246 ----~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
......-....+....++|+|||++|+++.. .+.-|+
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 0000000011235789999999999999865 444554
No 182
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.88 E-value=5.2e-08 Score=90.09 Aligned_cols=117 Identities=12% Similarity=0.058 Sum_probs=78.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.++++++.++.||+++...+.|.+++.+. ...+.+. .. ....|+
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~---~~------------------------------~l~~P~ 162 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL---WQ------------------------------SLEKPR 162 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CT------------------------------TCSCEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCC-CceEEEE---eC------------------------------CCCCcc
Confidence 6899999999999999999899999999753 2222210 11 015799
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+|+++|++.+||+++... ...+..++... . ....+ +. ..-..|.+|+|+|++++
T Consensus 163 ~iavdp~~g~ly~td~~~--------------~~~I~r~~~dG---~-~~~~~----~~----~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGN--------------TPRIEASSMDG---S-GRRII----AD----THLFWPNGLTIDYAGRR 216 (349)
T ss_dssp EEEEETTTTEEEEEECSS--------------SCEEEEEETTS---C-SCEES----CC----SSCSCEEEEEEETTTTE
T ss_pred eEEEecCcCeEEEeccCC--------------CCEEEEEeCCC---C-CcEEE----EE----CCCCCcceEEEeCCCCE
Confidence 999999999999987522 01121111100 0 00000 00 01146889999999999
Q ss_pred EEEEeCCCCcEEEEEec
Q psy11412 194 LYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~ 210 (290)
||+++...+.|..+|++
T Consensus 217 lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 217 MYWVDAKHHVIERANLD 233 (349)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEEeCC
Confidence 99999999999999974
No 183
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.88 E-value=7.8e-08 Score=87.39 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=67.5
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|.+++|+|||++||+++...+.+-++.... .++-.+. . .+...... .....+.++++++
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~--~~Gl~~~--~------~~~~~~~~---------~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA--RTGLPTG--K------AEVFIDST---------GIKGGMDGSVCDA 239 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCT--TTCCBSS--C------CEEEEECT---------TSSSEEEEEEECT
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEccc--ccCCccc--C------ceEEEECC---------CCCCCCCeeEECC
Confidence 36788999999999999875322222211100 0010000 0 00010000 0123567899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc-cCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS-LDG 268 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s-PDG 268 (290)
||+ ||+++++.+.|.+||. + .+.+..+.... ..|..++|+ ||+
T Consensus 240 ~G~-lwva~~~~~~v~~~d~-~---g~~~~~i~~~~-------------------------------~~~~~~af~g~d~ 283 (326)
T 2ghs_A 240 EGH-IWNARWGEGAVDRYDT-D---GNHIARYEVPG-------------------------------KQTTCPAFIGPDA 283 (326)
T ss_dssp TSC-EEEEEETTTEEEEECT-T---CCEEEEEECSC-------------------------------SBEEEEEEESTTS
T ss_pred CCC-EEEEEeCCCEEEEECC-C---CCEEEEEECCC-------------------------------CCcEEEEEecCCC
Confidence 996 7888877788999975 2 24445554433 158999998 999
Q ss_pred CEEEEEcC
Q psy11412 269 KRIYVSSS 276 (290)
Q Consensus 269 ~~L~Van~ 276 (290)
++||+++.
T Consensus 284 ~~L~vt~~ 291 (326)
T 2ghs_A 284 SRLLVTSA 291 (326)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEec
Confidence 99999865
No 184
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.87 E-value=5.6e-09 Score=103.63 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=71.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..+++||||+++|+ + .+|+|.+||+.... ...+ + .++. . ....+
T Consensus 17 ~~~~~~~~spdg~~~~~-~-~dg~i~~~d~~~g~-~~~~--~-~~~~--------------------------~-~~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-E-QKGTVRLWNVETNT-STVL--I-EGKK--------------------------I-ESLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-C-SSSCEEEBCGGGCC-CEEE--E-CTTT--------------------------T-TTTTC
T ss_pred ccccccEEcCCCcEEEE-e-CCCCEEEEECCCCc-EEEE--e-cccc--------------------------c-ccccc
Confidence 35778899999998875 3 57899999997632 2211 1 1100 0 00147
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|||||++|+.+......+.. .....+.++++.. .+. ..+... .+ ....+..++|||||+
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~-------~~~~~i~~~d~~~---~~~-~~l~~~--~~----~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQH-------SYTGYYVLSKIPH---GDP-QSLDPP--EV----SNAKLQYAGWGPKGQ 126 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSS-------CCCSEEEEEESSS---CCC-EECCCT--TC----CSCCCSBCCBCSSTT
T ss_pred ceEEECCCCCEEEEEecCccceee-------cceeeEEEEECCC---Cce-EeccCC--cc----ccccccccEECCCCC
Confidence 789999999998887552211100 0012233333322 111 111100 00 012255689999999
Q ss_pred EEEEEeCCCCcEEEEEecC
Q psy11412 193 YLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|+.+.. ++|.+||+..
T Consensus 127 ~la~~~~--~~i~~~~~~~ 143 (723)
T 1xfd_A 127 QLIFIFE--NNIYYCAHVG 143 (723)
T ss_dssp CEEEEET--TEEEEESSSS
T ss_pred EEEEEEC--CeEEEEECCC
Confidence 8877663 6899999853
No 185
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.87 E-value=5.5e-08 Score=93.51 Aligned_cols=119 Identities=12% Similarity=-0.004 Sum_probs=75.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
.+.+..++|||||++|+++. ++.|.+|++.+...+ +....+ .++ ..
T Consensus 18 ~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~-~~h------------------------------~~ 64 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQF-TGH------------------------------GS 64 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEE-CTT------------------------------TT
T ss_pred cCceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEE-ecC------------------------------CC
Confidence 44678899999999999887 679999999753111 222221 111 13
Q ss_pred C-ceEEEEcc--CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeee-----ecccccccCccccCccccCCCCce
Q psy11412 111 S-SQMFQLSL--DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-----QRNEMRSMPLSSLGSWKYPARSMV 182 (290)
Q Consensus 111 g-Pr~vafsP--dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~p~~~~~~~~~~~~~~~ 182 (290)
. +..++|+| ||++|++++. + +.+.+|+..... ....+..+. . .....
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~---------------d-g~v~vw~~~~~~~~~~~~~~~~~~~~-----~----~~~~v 119 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDE---------------S-GKVIVWGWTFDKESNSVEVNVKSEFQ-----V----LAGPI 119 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEET---------------T-SEEEEEEEEEEGGGTEEEEEEEEEEE-----C----CSSCE
T ss_pred ceEEEEEECcCCCCCEEEEecC---------------C-CEEEEEeCCCCcccccccccccchhh-----c----ccccE
Confidence 5 78899999 9999998765 2 244445553210 001111100 0 12457
Q ss_pred eEEEEccCCCEEEEEeCCC---CcEEEEE
Q psy11412 183 TDILISLDDRYLYTSNWMH---GDIRQYD 208 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~~---~~V~v~D 208 (290)
..++|||||++|+++.... +.|.+||
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred EEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 8899999999999887432 5788886
No 186
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.86 E-value=9.6e-08 Score=90.06 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.++++++.++.||+++...+.|.+++++. ...+.+. .. ....|
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~---~~------------------------------~~~~P 204 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF---RE------------------------------NGSKP 204 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEE---EC------------------------------SSCCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEE---eC------------------------------CCCCc
Confidence 37999999999999999999999999998753 2222211 11 01579
Q ss_pred eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
++|+++|.+.+||+++... ..+.+.. -+|... ..+. . ..-..|.+|+|++++
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~-----~dG~~~-----------~~~~--~---------~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGG-----LNGVDI-----------YSLV--T---------ENIQWPNGITLDLLS 257 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEE-----TTSCSC-----------EEEE--C---------SSCSCEEEEEEETTT
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEe-----CCCCcc-----------EEEE--E---------CCCCceEEEEEEeCC
Confidence 9999999999999986411 1111100 011100 0000 0 011468899999999
Q ss_pred CEEEEEeCCCCcEEEEEec
Q psy11412 192 RYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~ 210 (290)
++||+++...+.|..+|+.
T Consensus 258 ~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp TEEEEEETTTTEEEEEETT
T ss_pred CEEEEEECCCCEEEEEeCC
Confidence 9999999989999999984
No 187
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=98.86 E-value=7.9e-08 Score=85.36 Aligned_cols=140 Identities=9% Similarity=0.093 Sum_probs=81.1
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++.|+...+..... ..-.+.+..++|+|||++|++++. +++|++||+.. .+.+..+..+
T Consensus 198 ~i~d~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~-Dg~i~iwd~~~---~~~~~~~~~~--------------- 256 (340)
T 4aow_A 198 KVWNLANCKLKTNH--IGHTGYLNTVTVSPDGSLCASGGK-DGQAMLWDLNE---GKHLYTLDGG--------------- 256 (340)
T ss_dssp EEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEET-TCEEEEEETTT---TEEEEEEECS---------------
T ss_pred EEEECCCCceeeEe--cCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEecc---CceeeeecCC---------------
Confidence 34455544433322 012346789999999999998875 89999999865 3333322211
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
.....+.|+|++..+..... + .+.+++... ...+.........
T Consensus 257 -----------------~~v~~~~~~~~~~~~~~~~d--~---------------~i~iwd~~~---~~~~~~~~~~~~~ 299 (340)
T 4aow_A 257 -----------------DIINALCFSPNRYWLCAATG--P---------------SIKIWDLEG---KIIVDELKQEVIS 299 (340)
T ss_dssp -----------------SCEEEEEECSSSSEEEEEET--T---------------EEEEEETTT---TEEEEEECCC---
T ss_pred -----------------ceEEeeecCCCCceeeccCC--C---------------EEEEEECCC---CeEEEecccccee
Confidence 35677999999987765432 1 222222111 0000000000000
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
............++|||||++|+++. .++.|.+||+..
T Consensus 300 ~~~~~h~~~v~~l~~s~dg~~l~sgs-~Dg~v~iW~~~t 337 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADGQTLFAGY-TDNLVRVWQVTI 337 (340)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEE-TTSCEEEEEEEC
T ss_pred eeccCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEeCCC
Confidence 00001124577899999999999888 689999999964
No 188
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=98.86 E-value=1.4e-07 Score=85.59 Aligned_cols=210 Identities=11% Similarity=0.046 Sum_probs=114.6
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCC---CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEe
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLD---DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 89 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpD---Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~ 89 (290)
++.|+...+..... .....+..+.++|. +.+++++.. ++.|.+||+.... .+..+...
T Consensus 125 ~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~d~~~~~---~~~~~~~~------------ 185 (408)
T 4a11_B 125 KVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTR-GPKVQLCDLKSGS---CSHILQGH------------ 185 (408)
T ss_dssp EEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEES-SSSEEEEESSSSC---CCEEECCC------------
T ss_pred EEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcC-CCeEEEEeCCCcc---eeeeecCC------------
Confidence 45555555444433 34556778888885 448887764 7899999997532 22211111
Q ss_pred cCCCCcCCCCcceeeccccCCCceEEEEccCCCE-EEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC-
Q psy11412 90 DDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR-IYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP- 167 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~-lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p- 167 (290)
......++|+|++++ |++++. .+ .+..++..... ..+..+.
T Consensus 186 -------------------~~~v~~~~~~~~~~~ll~~~~~-dg---------------~i~i~d~~~~~--~~~~~~~~ 228 (408)
T 4a11_B 186 -------------------RQEILAVSWSPRYDYILATASA-DS---------------RVKLWDVRRAS--GCLITLDQ 228 (408)
T ss_dssp -------------------CSCEEEEEECSSCTTEEEEEET-TS---------------CEEEEETTCSS--CCSEECCT
T ss_pred -------------------CCcEEEEEECCCCCcEEEEEcC-CC---------------cEEEEECCCCC--cccccccc
Confidence 145788999999996 555443 11 22222221100 0000000
Q ss_pred -----ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEee-------------EE--eeCce-
Q psy11412 168 -----LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG-------------QI--FLGGK- 226 (290)
Q Consensus 168 -----~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~-------------~i--~~Gg~- 226 (290)
.................++|+|||++|+++. .++.|.+||+.......... .. ..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred cccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 0000000001124678899999999999888 68899999996422111000 00 00000
Q ss_pred --ecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCCcc
Q psy11412 227 --IQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDKE 284 (290)
Q Consensus 227 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~~ 284 (290)
...++.|.+++...... ...+.+. .+....++|+|||++|++++. .+.-|+-.
T Consensus 308 ~~~~~~~~i~v~d~~~~~~---~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQ---ITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp EEEEETTEEEEEETTTCCE---EEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred EEEecCCEEEEEECcCCcc---eeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 14567788888654210 0111211 135688999999999999965 55556543
No 189
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.85 E-value=3.4e-08 Score=94.29 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=91.6
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 34 MVTDILISLD--DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 34 ~p~~va~SpD--Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.|.+|+++|+ +..||+++.. +.|+.++..+. .+.. + .+ ....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g---~v~~-~-~~------------------------------~~~~ 183 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ---YVDI-K-TT------------------------------NIGQ 183 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTT---EEEE-E-CC------------------------------CCSC
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCC---EEEE-e-ec------------------------------CCCC
Confidence 6999999995 7889999876 89999987542 2211 1 00 0157
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
|.+|+|+++|+ ||+++...... ...+ +.... ..... . .-.++....|.+|+++|++
T Consensus 184 P~giavd~dG~-lyVad~~~~~~-----------~~gv--~~~~~---~~~~~---~----~~~~~~~~~P~giavd~~~ 239 (433)
T 4hw6_A 184 CADVNFTLNGD-MVVVDDQSSDT-----------NTGI--YLFTR---ASGFT---E----RLSLCNARGAKTCAVHPQN 239 (433)
T ss_dssp EEEEEECTTCC-EEEEECCSCTT-----------SEEE--EEECG---GGTTC---C----EEEEEECSSBCCCEECTTT
T ss_pred ccEEEECCCCC-EEEEcCCCCcc-----------cceE--EEEEC---CCCee---c----cccccccCCCCEEEEeCCC
Confidence 99999999999 99987521100 0001 00000 00000 0 0001112456789999966
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEE-eeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQI-FLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i-~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
..||+++..++.|..||..+ ...+..+ ..+. ...+..++|+|||++
T Consensus 240 G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~~~------------------------------~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 240 GKIYYTRYHHAMISSYDPAT---GTLTEEEVMMDT------------------------------KGSNFHIVWHPTGDW 286 (433)
T ss_dssp CCEEECBTTCSEEEEECTTT---CCEEEEEEECSC------------------------------CSSCEEEEECTTSSE
T ss_pred CeEEEEECCCCEEEEEECCC---CeEEEEEeccCC------------------------------CCCcccEEEeCCCCE
Confidence 67899998889999887642 2221111 1121 014567999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||+++.
T Consensus 287 LYvad~ 292 (433)
T 4hw6_A 287 AYIIYN 292 (433)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999976
No 190
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.84 E-value=9.2e-08 Score=95.73 Aligned_cols=166 Identities=6% Similarity=-0.006 Sum_probs=103.2
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
.+.|+..++..... ..-.+.+..++|+|||++|++++. +|.|.+||+.+. +.+..+...
T Consensus 38 ~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~---~~~~~~~~~--------------- 96 (814)
T 3mkq_A 38 EIWNYETQVEVRSI--QVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTG---EKVVDFEAH--------------- 96 (814)
T ss_dssp EEEETTTTEEEEEE--ECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTC---CEEEEEECC---------------
T ss_pred EEEECCCCceEEEE--ecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC---cEEEEEecC---------------
Confidence 34555554433332 012346789999999999998875 899999999753 233222111
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
...++.++|+|+|++|++++. + +.+.+++... ...... ...
T Consensus 97 ----------------~~~v~~~~~s~~~~~l~~~~~---------------d-g~i~vw~~~~---~~~~~~----~~~ 137 (814)
T 3mkq_A 97 ----------------PDYIRSIAVHPTKPYVLSGSD---------------D-LTVKLWNWEN---NWALEQ----TFE 137 (814)
T ss_dssp ----------------SSCEEEEEECSSSSEEEEEET---------------T-SEEEEEEGGG---TSEEEE----EEE
T ss_pred ----------------CCCEEEEEEeCCCCEEEEEcC---------------C-CEEEEEECCC---CceEEE----EEc
Confidence 146788999999999998765 2 2343344321 100000 000
Q ss_pred ccccCCCCceeEEEEcc-CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceee
Q psy11412 173 SWKYPARSMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~Sp-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (290)
........++|+| ||+.|+++. .+++|.+||+..... ...+..+.
T Consensus 138 ----~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~---~~~~~~~~-------------------------- 183 (814)
T 3mkq_A 138 ----GHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTP---NFTLTTGQ-------------------------- 183 (814)
T ss_dssp ----CCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEETTCSSC---SEEEECCC--------------------------
T ss_pred ----CCCCcEEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcc---eeEEecCC--------------------------
Confidence 0123567899999 898888888 689999999854221 12221111
Q ss_pred cccccCCcceEEEcc--CCCEEEEEcC
Q psy11412 252 GRRFTGSSQMFQLSL--DGKRIYVSSS 276 (290)
Q Consensus 252 ~~~~~~~P~~~a~sP--DG~~L~Van~ 276 (290)
......++|+| ||++|+++..
T Consensus 184 ----~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 184 ----ERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp ----TTCCCEEEECCSTTCCEEEEECT
T ss_pred ----CCCEEEEEEEECCCCCEEEEEeC
Confidence 01467899998 9999998865
No 191
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.84 E-value=8.9e-08 Score=94.92 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=34.5
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCC----CeEEEEEcCC
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMH----GDIRQYDIRD 64 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~----g~V~v~dv~d 64 (290)
.-.++|+..++.....-...-...+.++++||||++|+++.... ..|.+||+.+
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 35567777655432220011234678999999999999875422 3899999865
No 192
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.83 E-value=1.1e-07 Score=94.76 Aligned_cols=151 Identities=10% Similarity=0.132 Sum_probs=96.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
-..|.++++++.+.+||+++...+.|..++.+.....+. +...+ -..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~---v~~~~------------------------------~~~ 85 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN---VVVSG------------------------------LLS 85 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE---EECSS------------------------------CSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE---EEeCC------------------------------CCC
Confidence 347999999999999999999999999888753211111 11110 047
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
|.+||+++.++.||+++...+.+.+... +|... +.+. . ..-..|.+|+++|.+
T Consensus 86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~-----dG~~~-----------~~l~---~--------~~l~~P~~Iavdp~~ 138 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTDSETNRIEVSNL-----DGSLR-----------KVLF---W--------QELDQPRAIALDPSS 138 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-----TSCSC-----------EEEE---C--------SSCSCCCCEEEETTT
T ss_pred cCeEEEEecCCEEEEEeCCCCEEEEEEC-----CCCCE-----------EEEE---e--------CCCCCCceEEEecCC
Confidence 9999999999999999863332222111 11100 0010 0 011357789999999
Q ss_pred CEEEEEeCCC-CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 192 RYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 192 r~Lyvs~r~~-~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
.+||.+++++ ..|...+.+ ....+.+.. ... .+|.++++++++++
T Consensus 139 g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~--~~~-------------------------------~~P~Glald~~~~~ 184 (619)
T 3s94_A 139 GFMYWTDWGEVPKIERAGMD-GSSRFIIIN--SEI-------------------------------YWPNGLTLDYEEQK 184 (619)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCSCEEEEC--SSC-------------------------------SSEEEEEEETTTTE
T ss_pred CeEEEeccCCCCEEEEEECC-CCceEEEEe--CCC-------------------------------CCCcEEEEEccCCE
Confidence 9999999874 567766653 212222210 011 27999999999999
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||+++.
T Consensus 185 LY~aD~ 190 (619)
T 3s94_A 185 LYWADA 190 (619)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999976
No 193
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.82 E-value=5.5e-08 Score=96.44 Aligned_cols=54 Identities=13% Similarity=-0.052 Sum_probs=32.7
Q ss_pred EEEEEecCCCccCCCCC-CCCC---CCceEEEEEcCCCCEEEEE-eC--CCCeEEEEEcCC
Q psy11412 11 ADKVIDIPAKQVQGYPG-GDKV---PAMVTDILISLDDRYLYTS-NW--MHGDIRQYDIRD 64 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~v---~~~p~~va~SpDGr~Lyva-~~--~~g~V~v~dv~d 64 (290)
.-.+.|+..++....+. .... ......+++||||++|++. +. ....|.+||+..
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 45677777665322220 0000 2356789999999999665 32 235788999865
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.82 E-value=1e-07 Score=84.38 Aligned_cols=36 Identities=6% Similarity=0.128 Sum_probs=25.8
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL 223 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~ 223 (290)
.|.+|++++||+ ||+++ ++.|.+||.. .+.+..+..
T Consensus 219 ~p~~i~~d~~G~-l~v~~--~~~v~~~~~~----g~~~~~~~~ 254 (296)
T 3e5z_A 219 KTDGLRVDAGGL-IWASA--GDGVHVLTPD----GDELGRVLT 254 (296)
T ss_dssp CCCSEEEBTTSC-EEEEE--TTEEEEECTT----SCEEEEEEC
T ss_pred CCCeEEECCCCC-EEEEc--CCeEEEECCC----CCEEEEEEC
Confidence 456799999997 68887 6789999763 344455543
No 195
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.82 E-value=4.7e-08 Score=91.61 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.++++++.++.||+++...+.|.+++.+. ...+.+. ..+ -..|+
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~---~~~------------------------------l~~P~ 205 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLL---WQS------------------------------LEKPR 205 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEE---CSS------------------------------CSCEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEee---cCC------------------------------CCCCc
Confidence 6889999999999999999889999888742 2212211 110 15799
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+|+++|++.+||+++... ...+..++... .....+. . ..-..|.+|+|+|++++
T Consensus 206 giavdp~~g~ly~td~~~--------------~~~I~r~~~dG-~~~~~~~--~---------~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 206 AIALHPMEGTIYWTDWGN--------------TPRIEASSMDG-SGRRIIA--D---------THLFWPNGLTIDYAGRR 259 (386)
T ss_dssp EEEEETTTTEEEEEECSS--------------SCEEEEEETTS-CSCEEEE--C---------SSCSCEEEEEEEGGGTE
T ss_pred EEEEEcCCCeEEEeccCC--------------CCEEEEEeCCC-CCcEEEE--E---------CCCCCeeeEEEeCCCCE
Confidence 999999999999987521 01111111100 0000000 0 01135789999999999
Q ss_pred EEEEeCCCCcEEEEEec
Q psy11412 194 LYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~ 210 (290)
||+++...+.|..+|++
T Consensus 260 lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 260 MYWVDAKHHVIERANLD 276 (386)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEEECCCCEEEEEeCC
Confidence 99999989999999874
No 196
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.81 E-value=6.5e-08 Score=89.63 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.+++++|||+ |||+.. .|.|.+++ + +..+.+..+.+. .....+|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~-~g~I~~i~--~-g~~~~~~~~~v~----------------------------~~g~~~p~ 78 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAER-PGRIRLFR--E-GRLSTYAELSVY----------------------------HRGESGLL 78 (352)
T ss_dssp CEEEEEECTTSC-EEEEET-TTEEEEEE--T-TEEEEEEECCCC----------------------------CSTTCSEE
T ss_pred CceEEEEcCCCe-EEEEeC-CCeEEEEE--C-CCccEeecceEe----------------------------ecCCCCce
Confidence 799999999998 888887 48999988 3 222222211100 00126899
Q ss_pred EEEEccC---CCEEEEEcC
Q psy11412 114 MFQLSLD---GKRIYVSSS 129 (290)
Q Consensus 114 ~vafsPd---G~~lYv~ne 129 (290)
+|+|+|| +++|||++.
T Consensus 79 gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 79 GLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp EEEECTTTTTSCEEEEEEE
T ss_pred eEEECCCCCCCCEEEEEEe
Confidence 9999999 899999875
No 197
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=98.81 E-value=4.9e-08 Score=87.82 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=47.6
Q ss_pred CceeEEEEccCC----CEEEEEeCCCCcEEEEEecCCCCceE-eeEEeeCceecCCCceEEecCCCCCCCCCcceeeccc
Q psy11412 180 SMVTDILISLDD----RYLYTSNWMHGDIRQYDIRDTAHPVL-VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRR 254 (290)
Q Consensus 180 ~~~~~i~~SpDG----r~Lyvs~r~~~~V~v~Dv~d~~~~~~-v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (290)
.....++|+||+ ++|+++. .+++|.+||+.+...... ...+. +.
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~-~~----------------------------- 261 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCS-QDGRVFIWTCDDASSNTWSPKLLH-KF----------------------------- 261 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEEE-EC-----------------------------
T ss_pred CceEEEEecCCCCCCCceEEEEc-CCCeEEEEEccCccccchhhhhhh-cC-----------------------------
Confidence 457889999997 7787777 689999999965221110 01110 00
Q ss_pred ccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 255 FTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 255 ~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
.+....++|+|||++|++++. ...-|+
T Consensus 262 -~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 262 -NDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp -SSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred -CCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 125788999999999998865 455555
No 198
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=98.80 E-value=1.1e-07 Score=89.13 Aligned_cols=167 Identities=9% Similarity=0.044 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-------CceeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-------HPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 104 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~-------~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (290)
.+.+..++++|++..++++...+|.|.+|++.... ....+..+..
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~---------------------------- 179 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG---------------------------- 179 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC----------------------------
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC----------------------------
Confidence 44677899999854444444568999999996420 0111111111
Q ss_pred ccccCCCceEEEEccCCC-EEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCcee
Q psy11412 105 GRRFTGSSQMFQLSLDGK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVT 183 (290)
Q Consensus 105 ~~~~g~gPr~vafsPdG~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~ 183 (290)
. +..+.+++|+|+++ +|++++. ++.+.++++........... +..... .....+.
T Consensus 180 -h--~~~v~~l~~~~~~~~~l~s~~~----------------dg~i~vwd~~~~~~~~~~~~-~~~~~~----~h~~~v~ 235 (430)
T 2xyi_A 180 -H--QKEGYGLSWNPNLNGYLLSASD----------------DHTICLWDINATPKEHRVID-AKNIFT----GHTAVVE 235 (430)
T ss_dssp -C--SSCCCCEEECTTSTTEEEEECT----------------TSCEEEEETTSCCBGGGEEE-CSEEEC----CCSSCEE
T ss_pred -C--CCCeEEEEeCCCCCCeEEEEeC----------------CCeEEEEeCCCCCCCCceec-cceeec----CCCCCEe
Confidence 0 14578899999999 7776543 12233333321000000000 000000 1124578
Q ss_pred EEEEcc-CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412 184 DILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 262 (290)
Q Consensus 184 ~i~~Sp-DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 262 (290)
.++++| ++..|+++. .++.|.+||+......+.+..+.... +.++.+
T Consensus 236 ~v~~~p~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-------------------------------~~v~~i 283 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVA-DDQKLMIWDTRNNNTSKPSHTVDAHT-------------------------------AEVNCL 283 (430)
T ss_dssp EEEECSSCTTEEEEEE-TTSEEEEEETTCSCSSSCSEEEECCS-------------------------------SCEEEE
T ss_pred eeEEeCCCCCEEEEEe-CCCeEEEEECCCCCCCcceeEeecCC-------------------------------CCeEEE
Confidence 899999 555555555 78999999996532222222222111 258899
Q ss_pred EEccCCCEEE-EEcC--CCCCCC
Q psy11412 263 QLSLDGKRIY-VSSS--LFSPWD 282 (290)
Q Consensus 263 a~sPDG~~L~-Van~--~~~~~~ 282 (290)
+|+|+|+.++ +++. .+.-||
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEE
T ss_pred EeCCCCCCEEEEEeCCCeEEEEe
Confidence 9999998655 4432 444554
No 199
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.80 E-value=9.9e-09 Score=93.63 Aligned_cols=50 Identities=6% Similarity=-0.076 Sum_probs=31.5
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCC-----CCeEEEEEcC
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWM-----HGDIRQYDIR 63 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~-----~g~V~v~dv~ 63 (290)
.-.++|+..++..... .-.....++++|| ||++|+.+... ...|.++|..
T Consensus 169 ~l~~~d~~~g~~~~l~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 169 RLMRVDLKTGESTVIL---QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp EEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred eEEEEECCCCceEEee---cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 4456676665543322 2234578899999 99988766543 2367777764
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.80 E-value=1.6e-07 Score=81.92 Aligned_cols=145 Identities=11% Similarity=0.148 Sum_probs=89.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.+++++++|+ ||+++...+.|.+|+. + +.... +.... ....
T Consensus 145 ~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~-g~~~~---~~~~~-----------------------------~~~~ 189 (300)
T 2qc5_A 145 GSYPAFITLGSDNA-LWFTENQNNSIGRITN-T-GKLEE---YPLPT-----------------------------NAAA 189 (300)
T ss_dssp TCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-CCEEE---EECSS-----------------------------TTCC
T ss_pred CCCceeEEECCCCC-EEEEecCCCeEEEECC-C-CcEEE---eeCCC-----------------------------CCCC
Confidence 34799999999998 8889887889999986 3 22211 11110 0257
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD 190 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD 190 (290)
|.+++++++|+ ||+++...+ .+..++. + ...... .++ ....+.+|+++++
T Consensus 190 ~~~i~~d~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 190 PVGITSGNDGA-LWFVEIMGN---------------KIGRITT-T----GEISEY--------DIPTPNARPHAITAGKN 240 (300)
T ss_dssp EEEEEECTTSS-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECST
T ss_pred cceEEECCCCC-EEEEccCCC---------------EEEEEcC-C----CcEEEE--------ECCCCCCCceEEEECCC
Confidence 89999999995 777765221 1221221 0 000000 011 1245788999999
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
|+ ||+++..++.|..||.. + .. ..+..... ...|..++++++|+
T Consensus 241 g~-l~v~~~~~~~i~~~~~~--g--~~-~~~~~~~~-----------------------------~~~~~~i~~~~~g~- 284 (300)
T 2qc5_A 241 SE-IWFTEWGANQIGRITND--N--TI-QEYQLQTE-----------------------------NAEPHGITFGKDGS- 284 (300)
T ss_dssp TC-EEEEETTTTEEEEECTT--S--CE-EEEECCST-----------------------------TCCCCCEEECTTSC-
T ss_pred CC-EEEeccCCCeEEEECCC--C--cE-EEEECCcc-----------------------------CCccceeEeCCCCC-
Confidence 98 89999888999999762 1 11 12222110 12689999999998
Q ss_pred EEEEcC
Q psy11412 271 IYVSSS 276 (290)
Q Consensus 271 L~Van~ 276 (290)
||+++.
T Consensus 285 l~v~~~ 290 (300)
T 2qc5_A 285 VWFALK 290 (300)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 777654
No 201
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.80 E-value=1.3e-07 Score=96.89 Aligned_cols=117 Identities=10% Similarity=0.063 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.+||+++.++.||+++...++|.+++++. ...+.+ ...+ ...|
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l---~~~~------------------------------l~~P 516 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL---FREN------------------------------GSKP 516 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEE---EECT------------------------------TCCE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCC-CeEEEE---EeCC------------------------------CCCc
Confidence 37899999999999999999999999999853 222222 1110 1579
Q ss_pred eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
++|+++|.+.+||+++... ..|.+... +|... ..+. . ..-..|.+|+|++++
T Consensus 517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~-----dG~~~-----------~~lv--~---------~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 517 RAIVVDPVHGFMYWTDWGTPAKIKKGGL-----NGVDI-----------YSLV--T---------ENIQWPNGITLDLLS 569 (791)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEET-----TSCCE-----------EEEE--C---------SSCSCEEEEEEETTT
T ss_pred ceEEEecCCCCEEEecCCCCCeEEEEec-----CCCce-----------EEEE--e---------CCCCCceEEEEecCC
Confidence 9999999999999987421 11111100 11100 0000 0 011468899999999
Q ss_pred CEEEEEeCCCCcEEEEEec
Q psy11412 192 RYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~ 210 (290)
++||++++..+.|.++++.
T Consensus 570 ~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp TEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeCCCCcEEEEecC
Confidence 9999999999999999984
No 202
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.80 E-value=7.8e-08 Score=91.38 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=77.8
Q ss_pred CCCceEEEEEcCCCCEEEE---EeCCCCeEEEEEcCCCC----Cc-eeeeEEeecccccCCCceEEecCCCCcCCCCcce
Q psy11412 31 VPAMVTDILISLDDRYLYT---SNWMHGDIRQYDIRDTA----HP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVI 102 (290)
Q Consensus 31 v~~~p~~va~SpDGr~Lyv---a~~~~g~V~v~dv~d~~----~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~ 102 (290)
+++.+.+++|+|||++|++ ++..+++|++||+.... .. +.+..+..-
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~------------------------- 145 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL------------------------- 145 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-------------------------
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-------------------------
Confidence 4456899999999999997 56668999999986420 00 111111110
Q ss_pred eeccccCCCceEEEEccC-CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCc
Q psy11412 103 IKGRRFTGSSQMFQLSLD-GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSM 181 (290)
Q Consensus 103 ~~~~~~g~gPr~vafsPd-G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~ 181 (290)
.++ +..+..++|+|+ ++.|++++. ++ .+.+||+.. ...+.. .......
T Consensus 146 -~~h--~~~V~~v~~~p~~~~~las~s~---------------Dg-~v~iwD~~~---~~~~~~---------~~~~~~~ 194 (434)
T 2oit_A 146 -KDA--GGMVIDMKWNPTVPSMVAVCLA---------------DG-SIAVLQVTE---TVKVCA---------TLPSTVA 194 (434)
T ss_dssp -CSG--GGSEEEEEECSSCTTEEEEEET---------------TS-CEEEEEESS---SEEEEE---------EECGGGC
T ss_pred -CCC--CCceEEEEECCCCCCEEEEEEC---------------CC-eEEEEEcCC---Ccceee---------ccCCCCc
Confidence 000 146889999998 677776544 22 344455432 111110 0011235
Q ss_pred eeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 182 VTDILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
+..+++||||++|++++ .+++|.+||+.
T Consensus 195 v~~v~wspdg~~lasgs-~dg~v~iwd~~ 222 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGK-QNGTVVQYLPT 222 (434)
T ss_dssp EEEEEECTTSSCEEEEE-TTSCEEEECTT
T ss_pred eeEEEEcCCCCEEEEEc-CCCcEEEEccC
Confidence 67899999999999998 78999999974
No 203
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.79 E-value=6e-08 Score=95.44 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=42.1
Q ss_pred ceeEEEEccCCCEEEEEeCCC-------CcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecc
Q psy11412 181 MVTDILISLDDRYLYTSNWMH-------GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR 253 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~-------~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (290)
....+++||||++|+.+.+.. .+|.+||+...+.......+..+.
T Consensus 189 ~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---------------------------- 240 (662)
T 3azo_A 189 FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---------------------------- 240 (662)
T ss_dssp EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----------------------------
T ss_pred cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----------------------------
Confidence 455689999999998655332 479999996222111222222221
Q ss_pred cccCCcceEEEccCCCEEEEEcC
Q psy11412 254 RFTGSSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 254 ~~~~~P~~~a~sPDG~~L~Van~ 276 (290)
...+..++|||||+.+|+++.
T Consensus 241 --~~~~~~~~~spdg~l~~~~~~ 261 (662)
T 3azo_A 241 --EEAIAQAEWAPDGSLIVATDR 261 (662)
T ss_dssp --TBCEEEEEECTTSCEEEEECT
T ss_pred --CceEcceEECCCCeEEEEECC
Confidence 015788999999997777664
No 204
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.78 E-value=6.1e-08 Score=94.71 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=89.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+..++|+|++ +|+++. .+|+|++||+.+...+... + .++ ....
T Consensus 267 ~~v~sv~~s~~~-~lasgs-~DgtV~lWD~~~~~~~~~~--~-~~H------------------------------~~~V 311 (524)
T 2j04_B 267 SLITTFDFLSPT-TVVCGF-KNGFVAEFDLTDPEVPSFY--D-QVH------------------------------DSYI 311 (524)
T ss_dssp TCEEEEEESSSS-EEEEEE-TTSEEEEEETTBCSSCSEE--E-ECS------------------------------SSCE
T ss_pred CCEEEEEecCCC-eEEEEe-CCCEEEEEECCCCCCceEE--e-ecc------------------------------cccE
Confidence 467899999875 677666 4899999999753222111 1 111 1356
Q ss_pred eEE--EEccCC-CEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 113 QMF--QLSLDG-KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 113 r~v--afsPdG-~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..+ +|+|+| ++|+.++. ++.+.+||+.+ .+.+.... + ... ......++|||
T Consensus 312 ~sv~~~~s~~g~~~laS~S~----------------D~tvklWD~~~---~~~~~~~~-----~-~~~-~~~v~~v~fsp 365 (524)
T 2j04_B 312 LSVSTAYSDFEDTVVSTVAV----------------DGYFYIFNPKD---IATTKTTV-----S-RFR-GSNLVPVVYCP 365 (524)
T ss_dssp EEEEEECCTTSCCEEEEEET----------------TSEEEEECGGG---HHHHCEEE-----E-ECS-CCSCCCEEEET
T ss_pred EEEEEEcCCCCCeEEEEecc----------------CCeEEEEECCC---CCcccccc-----c-ccc-cCcccceEeCC
Confidence 777 678998 77776554 23444455432 11111100 0 000 01245699999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK 269 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~ 269 (290)
||+.|.++. .+++|.+||+..... +..+. |. .+....++|||||+
T Consensus 366 ~~~~l~s~~-~d~tv~lwd~~~~~~---~~~l~-gH------------------------------~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 366 QIYSYIYSD-GASSLRAVPSRAAFA---VHPLV-SR------------------------------ETTITAIGVSRLHP 410 (524)
T ss_dssp TTTEEEEEC-SSSEEEEEETTCTTC---CEEEE-EC------------------------------SSCEEEEECCSSCC
T ss_pred CcCeEEEeC-CCCcEEEEECccccc---ceeee-cC------------------------------CCceEEEEeCCCCC
Confidence 999977776 788999999864221 11111 22 12578899999999
Q ss_pred EEEEEcC
Q psy11412 270 RIYVSSS 276 (290)
Q Consensus 270 ~L~Van~ 276 (290)
+|++++.
T Consensus 411 ~l~Sgs~ 417 (524)
T 2j04_B 411 MVLAGSA 417 (524)
T ss_dssp BCEEEET
T ss_pred eEEEEEC
Confidence 9988865
No 205
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.78 E-value=2.2e-07 Score=84.98 Aligned_cols=117 Identities=8% Similarity=-0.011 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.++++++.++.||+++...+.|.+++.+. ...+.+. .. ....|+
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~---~~------------------------------~~~~P~ 125 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLF---WQ------------------------------ELDQPR 125 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CS------------------------------SCSSEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEE---eC------------------------------CCCCcc
Confidence 6889999999999999999899999999753 2222221 01 015799
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+++++|.+.+||+++... ...+..++..- .....+. . ..-..|.+|+|+|+++.
T Consensus 126 giavdp~~g~ly~td~~~--------------~~~I~r~~~dG-~~~~~~~--~---------~~l~~Pnglavd~~~~~ 179 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGE--------------VPKIERAGMDG-SSRFIII--N---------SEIYWPNGLTLDYEEQK 179 (318)
T ss_dssp EEEEEGGGTEEEEEECSS--------------SCEEEEEETTS-CSCEEEE--C---------SSCSCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEecCC--------------CCEEEEEEcCC-CCeEEEE--E---------CCCCCccEEEEeccCCE
Confidence 999999999999986310 11111111100 0000000 0 01135789999999999
Q ss_pred EEEEeCCCCcEEEEEec
Q psy11412 194 LYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~ 210 (290)
||+++...+.|..+|++
T Consensus 180 lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 180 LYWADAKLNFIHKSNLD 196 (318)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEEcCC
Confidence 99999999999999984
No 206
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.76 E-value=9.1e-07 Score=78.86 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..+.+++++||+.+||+.....+.|..+|.. .+++..+..++ ...+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~----g~v~~~i~l~g------------------------------~~D~ 72 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN----GDLIRTIPLDF------------------------------VKDL 72 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT----CCEEEEEECSS------------------------------CSSE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC----CCEEEEEecCC------------------------------CCCh
Confidence 4689999999999999865568888888874 34555555542 1468
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
.+|++.++|+ +|+++|..+.+..+.... ++ .+..++... ++.. ..+......+|+++|++.
T Consensus 73 EGIa~~~~g~-~~vs~E~~~~l~~~~v~~---~~-~i~~~~~~~---------~~~~-----~~~~N~g~EGLA~d~~~~ 133 (255)
T 3qqz_A 73 ETIEYIGDNQ-FVISDERDYAIYVISLTP---NS-EVKILKKIK---------IPLQ-----ESPTNCGFEGLAYSRQDH 133 (255)
T ss_dssp EEEEECSTTE-EEEEETTTTEEEEEEECT---TC-CEEEEEEEE---------CCCS-----SCCCSSCCEEEEEETTTT
T ss_pred HHeEEeCCCE-EEEEECCCCcEEEEEcCC---CC-eeeeeeeec---------cccc-----cccccCCcceEEEeCCCC
Confidence 8999998885 667777433222211110 11 111111111 0100 011223467899999999
Q ss_pred EEEEEeCCCC-cEEEEE
Q psy11412 193 YLYTSNWMHG-DIRQYD 208 (290)
Q Consensus 193 ~Lyvs~r~~~-~V~v~D 208 (290)
+||+++..+. .|..|+
T Consensus 134 ~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 134 TFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EEEEEEESSSEEEEEEE
T ss_pred EEEEEECcCCceEEEEc
Confidence 9999885543 444443
No 207
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.6e-08 Score=90.92 Aligned_cols=141 Identities=15% Similarity=0.090 Sum_probs=79.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
.+.+..++|+|++++|+++.. +|+|++||+......+.+...... . +..+. ..+ ......
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~-~------i~~~~-----~~~-------~~~~~~ 170 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSK-DGQIIVLKVNHYQQESEVKFLNCE-C------IRKIN-----LKN-------FGKNEY 170 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSEEEEEEEEEEEETTEEEEEEEE-E------EEEEE-----GGG-------GSSCCC
T ss_pred CCCEEEEEEeCCCCEEEEEeC-CCEEEEEEeccccCCceeeccccc-e------eEEEE-----ccC-------cccccC
Confidence 446889999999999998875 899999999521111111111100 0 00000 000 000133
Q ss_pred ceEEE--EccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 112 SQMFQ--LSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 112 Pr~va--fsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
...+. +++++++|++++. + +.+.+++... .+.+..+. + .+.......++|+|
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~---------------d-~~i~iwd~~~---~~~~~~~~-----~--~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 171 AVRMRAFVNEEKSLLVALTN---------------L-SRVIIFDIRT---LERLQIIE-----N--SPRHGAVSSICIDE 224 (437)
T ss_dssp EEEEEEEECSSCEEEEEEET---------------T-SEEEEEETTT---CCEEEEEE-----C--CGGGCCEEEEEECT
T ss_pred ceEEEEEEcCCCCEEEEEeC---------------C-CeEEEEeCCC---CeeeEEEc-----c--CCCCCceEEEEECC
Confidence 44455 7789999988765 2 2343344322 11121111 0 00123577899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEe
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF 222 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~ 222 (290)
||++|+++. .++.|.+||+.. .+.+..+.
T Consensus 225 ~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~ 253 (437)
T 3gre_A 225 ECCVLILGT-TRGIIDIWDIRF---NVLIRSWS 253 (437)
T ss_dssp TSCEEEEEE-TTSCEEEEETTT---TEEEEEEB
T ss_pred CCCEEEEEc-CCCeEEEEEcCC---ccEEEEEe
Confidence 999999988 689999999963 44555443
No 208
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.76 E-value=5.9e-07 Score=80.38 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
.|.+++++|||+ ||+++..++.|.+||...
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTT
T ss_pred cccCcEECCCCC-EEEEECCCCEEEEEeCCC
Confidence 678999999998 677766678999998754
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.75 E-value=4.7e-07 Score=80.98 Aligned_cols=59 Identities=8% Similarity=-0.031 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+.+.+++|||++||+++..++.|..|+. + +..+.. ... ...|.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~-g~~~~~---~~~-------------------------------~~~~~ 89 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-D-GTVDVL---LDA-------------------------------TAFTN 89 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-T-SCEEEE---EES-------------------------------CSCEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-C-CCEEEE---eCC-------------------------------CCccc
Confidence 67889999999999999988899999986 3 222211 111 14689
Q ss_pred EEEEccCCCEEEEEcC
Q psy11412 114 MFQLSLDGKRIYVSSS 129 (290)
Q Consensus 114 ~vafsPdG~~lYv~ne 129 (290)
+++++++|+ ||+++.
T Consensus 90 gl~~d~dG~-l~v~~~ 104 (305)
T 3dr2_A 90 GNAVDAQQR-LVHCEH 104 (305)
T ss_dssp EEEECTTSC-EEEEET
T ss_pred eeeECCCCC-EEEEEC
Confidence 999999998 666654
No 210
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=1.1e-07 Score=85.13 Aligned_cols=120 Identities=21% Similarity=0.158 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
+..++.|+ |+ +||+++...| +|+++|+.+ .+++.++.++ ..
T Consensus 44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T---gkv~~~~~l~--------------------------------~~ 86 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES---GKTLQQIELG--------------------------------KR 86 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT---CCEEEEEECC--------------------------------TT
T ss_pred ccceEEEE-CC-EEEEECCCCCCceEEEEECCC---CcEEEEEecC--------------------------------Cc
Confidence 44789998 55 8999975444 899999864 4555555443 23
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
+.+..++++|++||+++.. .+.+.++|..+ .+.+.+++.. . .+..+++||
T Consensus 87 ~FgeGit~~g~~ly~ltw~---------------~~~v~v~D~~t---~~~~~ti~~~----------~--eG~glt~dg 136 (262)
T 3nol_A 87 YFGEGISDWKDKIVGLTWK---------------NGLGFVWNIRN---LRQVRSFNYD----------G--EGWGLTHND 136 (262)
T ss_dssp CCEEEEEEETTEEEEEESS---------------SSEEEEEETTT---CCEEEEEECS----------S--CCCCEEECS
T ss_pred cceeEEEEeCCEEEEEEee---------------CCEEEEEECcc---CcEEEEEECC----------C--CceEEecCC
Confidence 4444455678899998752 22333333332 2333333321 1 224577899
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG 224 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G 224 (290)
+.||+|+ ++++|+++|. .+.+.+++|.++
T Consensus 137 ~~L~~Sd-Gs~~i~~iDp---~T~~v~~~I~V~ 165 (262)
T 3nol_A 137 QYLIMSD-GTPVLRFLDP---ESLTPVRTITVT 165 (262)
T ss_dssp SCEEECC-SSSEEEEECT---TTCSEEEEEECE
T ss_pred CEEEEEC-CCCeEEEEcC---CCCeEEEEEEec
Confidence 9999999 6889998864 457788888875
No 211
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.74 E-value=2e-07 Score=84.17 Aligned_cols=132 Identities=11% Similarity=0.110 Sum_probs=71.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|+++++++++..||+++.. +.|.++|... +..+.+.....+ ..-..|
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~-g~~~~~~~~~~~-----------------------------~~~~~p 128 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEG-GHATQLATSVDG-----------------------------VPFKWL 128 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETT-TEEEEECTTC-EECEEEESEETT-----------------------------EECSCE
T ss_pred CCCceEEEcCCCCcEEEEECC-CCEEEEeCCC-CEEEEecccCCC-----------------------------Cccccc
Confidence 469999999855679999875 4577777532 112222110000 001468
Q ss_pred eEEEEcc-CCCEEEEEcCCCCCcceee----cccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412 113 QMFQLSL-DGKRIYVSSSLFSPWDKEI----YPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI 187 (290)
Q Consensus 113 r~vafsP-dG~~lYv~nel~~~~d~~~----~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~ 187 (290)
..++++| +|+ +|+++.... ..... ... ....+.+..++... ..+.... .....|.+|++
T Consensus 129 ~~i~~d~~~G~-l~v~d~~~~-~~~~~~~~~~~~-~~~~g~v~~~d~~~----~~~~~~~---------~~~~~p~gia~ 192 (322)
T 2fp8_A 129 YAVTVDQRTGI-VYFTDVSTL-YDDRGVQQIMDT-SDKTGRLIKYDPST----KETTLLL---------KELHVPGGAEV 192 (322)
T ss_dssp EEEEECTTTCC-EEEEESCSS-CCTTCHHHHHHH-TCCCEEEEEEETTT----TEEEEEE---------EEESCCCEEEE
T ss_pred ceEEEecCCCE-EEEECCccc-ccccccceehcc-cCCCceEEEEeCCC----CEEEEec---------cCCccCcceEE
Confidence 9999999 885 888764210 00000 000 00011222222100 0000000 00134677999
Q ss_pred ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 188 SLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 188 SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|||++||+++...+.|.+|++..
T Consensus 193 ~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 193 SADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCCCEEEEEeCCCCeEEEEECCC
Confidence 999999999998889999999853
No 212
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=98.74 E-value=6.1e-07 Score=82.13 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=51.7
Q ss_pred CceeEEEEccCCCEEEEEeCCCCc-EEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCC
Q psy11412 180 SMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 258 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r~~~~-V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (290)
.....++|||||++|+++. .+++ |.+||+.. .+.+..+..|.. .+.
T Consensus 196 ~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~---~~~~~~~~~g~h-----------------------------~~~ 242 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCS-QDGTIIRVFKTED---GVLVREFRRGLD-----------------------------RAD 242 (355)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTCSEEEEEETTT---CCEEEEEECTTC-----------------------------CSC
T ss_pred CceEEEEECCCCCEEEEEe-CCCCEEEEEECCC---CcEEEEEEcCCC-----------------------------CCc
Confidence 4678899999999999888 6888 99999864 344555443310 125
Q ss_pred cceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 259 SQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 259 P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
...++|+|||++|+++.. ...-|+
T Consensus 243 v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 243 VVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEE
Confidence 788999999999999865 444554
No 213
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.7e-07 Score=94.86 Aligned_cols=119 Identities=10% Similarity=0.126 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
+.+..++|+|||++|++++. +|+|.+||+... ....+..+. ++ ....
T Consensus 10 ~~V~~l~~s~dg~~latg~~-dg~I~vwd~~~~-~~~~~~~l~-~h------------------------------~~~V 56 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSS-DKTIKIFEVEGE-THKLIDTLT-GH------------------------------EGPV 56 (753)
T ss_dssp CCEEEECCCSSSCCEEEEET-TTEEEEEEEETT-EEEEEEEEC-CC------------------------------SSCE
T ss_pred ceeEEEEECCCCCeEEEEEC-CCcEEEEecCCC-CCccceecc-CC------------------------------cCce
Confidence 36789999999999998875 899999998642 223332221 10 1467
Q ss_pred eEEEEccC--CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 113 QMFQLSLD--GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 113 r~vafsPd--G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
..++|+|+ |++|++++. ++ .+.++++.... ...+.. .. ........++++|+
T Consensus 57 ~~l~~s~~~~~~~l~s~s~---------------Dg-~I~vwd~~~~~-~~~~~~-----~~----~h~~~V~~v~~sp~ 110 (753)
T 3jro_A 57 WRVDWAHPKFGTILASCSY---------------DG-KVLIWKEENGR-WSQIAV-----HA----VHSASVNSVQWAPH 110 (753)
T ss_dssp EEEEECCTTSCSEEEEEET---------------TS-CEEEEEEETTE-EEEEEE-----EC----CCSSCEEEEEECCG
T ss_pred EEEEecCCCCCCEEEEEeC---------------CC-eEEEEECCCCc-cccccc-----cc----CCCCCeEEEEECCC
Confidence 88999998 999998765 22 34445543210 001111 00 01245788999999
Q ss_pred --CCEEEEEeCCCCcEEEEEecC
Q psy11412 191 --DRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 191 --Gr~Lyvs~r~~~~V~v~Dv~d 211 (290)
|+.|+++. .++.|.+||+..
T Consensus 111 ~~~~~l~sgs-~dg~I~vwdl~~ 132 (753)
T 3jro_A 111 EYGPLLLVAS-SDGKVSVVEFKE 132 (753)
T ss_dssp GGCSEEEEEE-TTSEEEEEECCS
T ss_pred CCCCEEEEEe-CCCcEEEEEeec
Confidence 99999888 689999999964
No 214
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.74 E-value=2.2e-08 Score=99.63 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412 35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM 114 (290)
Q Consensus 35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~ 114 (290)
..+++++|||++++.+ .+++|.+||+... ....+- .++.. .......
T Consensus 18 ~~~~~~s~dg~~~~~~--~d~~i~~~~~~~g-~~~~~~---~~~~~---------------------------~~~~~~~ 64 (719)
T 1z68_A 18 TFFPNWISGQEYLHQS--ADNNIVLYNIETG-QSYTIL---SNRTM---------------------------KSVNASN 64 (719)
T ss_dssp CCCCEESSSSEEEEEC--TTSCEEEEESSSC-CEEEEE---CHHHH---------------------------HTTTCSE
T ss_pred CCccEECCCCeEEEEc--CCCCEEEEEcCCC-cEEEEE---ccccc---------------------------cccceee
Confidence 4478999999776644 4789999998653 222221 11000 0013678
Q ss_pred EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412 115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL 194 (290)
Q Consensus 115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L 194 (290)
++|||||++|+.++.....|.. ...+.+.++++.. .+.+.. . .+ ......++|||||++|
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~-------s~~~~i~~~d~~~---g~~~~~---~-----~l--~~~~~~~~~SPDG~~l 124 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRY-------SYTATYYIYDLSN---GEFVRG---N-----EL--PRPIQYLCWSPVGSKL 124 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSS-------CEEEEEEEEETTT---TEECCS---S-----CC--CSSBCCEEECSSTTCE
T ss_pred EEECCCCCeEEEEecCceeEEe-------ecceEEEEEECCC---Cccccc---e-----ec--CcccccceECCCCCEE
Confidence 9999999999876541111100 0011222233211 111000 0 01 1234568999999998
Q ss_pred EEEeCCCCcEEEEEecC
Q psy11412 195 YTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 195 yvs~r~~~~V~v~Dv~d 211 (290)
+.+. +++|.+||+..
T Consensus 125 a~~~--~~~i~~~~~~~ 139 (719)
T 1z68_A 125 AYVY--QNNIYLKQRPG 139 (719)
T ss_dssp EEEE--TTEEEEESSTT
T ss_pred EEEE--CCeEEEEeCCC
Confidence 8765 57899999853
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.73 E-value=2.6e-07 Score=80.66 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|++++++++|+ ||+++...+.|..|+.. +.... +.... ....|
T Consensus 104 ~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~---~~~~~-----------------------------~~~~~ 148 (300)
T 2qc5_A 104 SGPYGITEGLNGD-IWFTQLNGDRIGKLTAD--GTIYE---YDLPN-----------------------------KGSYP 148 (300)
T ss_dssp CCEEEEEECSTTC-EEEEETTTTEEEEECTT--SCEEE---EECSS-----------------------------TTCCE
T ss_pred CCCccceECCCCC-EEEEccCCCeEEEECCC--CCEEE---ccCCC-----------------------------CCCCc
Confidence 5799999999987 67787777889888763 22211 11110 12579
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCC-CCceeEEEEccCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPA-RSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~-~~~~~~i~~SpDG 191 (290)
.+++++++|+ ||+++...+ .+..++. + ...... ..+. ...+.+|++++||
T Consensus 149 ~~i~~d~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~d~~g 199 (300)
T 2qc5_A 149 AFITLGSDNA-LWFTENQNN---------------SIGRITN-T----GKLEEY--------PLPTNAAAPVGITSGNDG 199 (300)
T ss_dssp EEEEECTTSS-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECTTS
T ss_pred eeEEECCCCC-EEEEecCCC---------------eEEEECC-C----CcEEEe--------eCCCCCCCcceEEECCCC
Confidence 9999999999 888765222 1211211 0 000000 0111 2457889999999
Q ss_pred CEEEEEeCCCCcEEEEEe
Q psy11412 192 RYLYTSNWMHGDIRQYDI 209 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv 209 (290)
+ ||+++...+.|.+||.
T Consensus 200 ~-l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 200 A-LWFVEIMGNKIGRITT 216 (300)
T ss_dssp S-EEEEETTTTEEEEECT
T ss_pred C-EEEEccCCCEEEEEcC
Confidence 5 7888877788999876
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.73 E-value=2.7e-07 Score=80.53 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=86.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.+++++++|+ ||+++..++.|.+||. + +..... ... ..+..
T Consensus 98 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~-g~~~~~---~~~-----------------------------~~~~~ 142 (299)
T 2z2n_A 98 DSAPYGITEGPNGD-IWFTEMNGNRIGRITD-D-GKIREY---ELP-----------------------------NKGSY 142 (299)
T ss_dssp TCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEEEE---ECS-----------------------------STTCC
T ss_pred CCCceeeEECCCCC-EEEEecCCceEEEECC-C-CCEEEe---cCC-----------------------------CCCCC
Confidence 34799999999986 6677766789999986 3 222111 110 01257
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD 190 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD 190 (290)
|.+++++++|+ +|+++...+ .+..++. + ..+... ..+ ....+.+|++++|
T Consensus 143 ~~~i~~~~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 143 PSFITLGSDNA-LWFTENQNN---------------AIGRITE-S----GDITEF--------KIPTPASGPVGITKGND 193 (299)
T ss_dssp EEEEEECTTSC-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECTT
T ss_pred CceEEEcCCCC-EEEEeCCCC---------------EEEEEcC-C----CcEEEe--------eCCCCCCcceeEEECCC
Confidence 89999999995 676654211 2222221 1 001000 001 1235788999999
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCE
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKR 270 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~ 270 (290)
|+ ||+++...+.|.+||. + +. . ..+..... ...|+.++++++|+
T Consensus 194 g~-l~v~~~~~~~i~~~~~-~-g~--~-~~~~~~~~-----------------------------~~~~~~i~~~~~g~- 237 (299)
T 2z2n_A 194 DA-LWFVEIIGNKIGRITT-S-GE--I-TEFKIPTP-----------------------------NARPHAITAGAGID- 237 (299)
T ss_dssp SS-EEEEETTTTEEEEECT-T-CC--E-EEEECSST-----------------------------TCCEEEEEECSTTC-
T ss_pred CC-EEEEccCCceEEEECC-C-Cc--E-EEEECCCC-----------------------------CCCceeEEECCCCC-
Confidence 98 7888877889999976 2 12 1 11211110 12689999999998
Q ss_pred EEEEc
Q psy11412 271 IYVSS 275 (290)
Q Consensus 271 L~Van 275 (290)
||+++
T Consensus 238 l~v~~ 242 (299)
T 2z2n_A 238 LWFTE 242 (299)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 77774
No 217
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.73 E-value=1e-07 Score=99.58 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEE-EEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIR-QYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~-v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.+.+++|+ ||++|+.+.. .+.|. +|++.. +....+ . ++ ...+
T Consensus 339 ~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~-~~~~~l---~-~~------------------------------~~~~ 381 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRT-GKAEKF---E-EN------------------------------LGNV 381 (1045)
T ss_dssp EEEEECSS-SEEEEEEEET-TEEEEEEEETTT-CCEEEC---C-CC------------------------------CCSE
T ss_pred eEEeeeEc-CCCeEEEEEC-CCceEEEEECCC-CCceEe---c-CC------------------------------ccce
Confidence 57789999 9999988876 66788 888754 222111 1 10 1457
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++|||||++|++++. ++ .+.++++.. .+...... + .......++|||||+
T Consensus 382 ~~~~~SpDG~~la~~~~---------------~~-~v~~~d~~t---g~~~~~~~-----~----~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVAND---------------RF-EIMTVDLET---GKPTVIER-----S----REAMITDFTISDNSR 433 (1045)
T ss_dssp EEEEECTTSSEEEEEET---------------TS-EEEEEETTT---CCEEEEEE-----C----SSSCCCCEEECTTSC
T ss_pred eeeEECCCCCEEEEECC---------------CC-eEEEEECCC---CceEEecc-----C----CCCCccceEECCCCC
Confidence 88999999999998765 11 222233211 11111000 0 112345699999999
Q ss_pred EEEEEeCC---------CCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEE
Q psy11412 193 YLYTSNWM---------HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 263 (290)
Q Consensus 193 ~Lyvs~r~---------~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a 263 (290)
+|+.+... ++.|.+||+.. .+ +..+. +. ...+..++
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~---g~-~~~l~-~~------------------------------~~~~~~~~ 478 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEG---RK-IFAAT-TE------------------------------NSHDYAPA 478 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTT---TE-EEECS-CS------------------------------SSBEEEEE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCC---Cc-EEEee-CC------------------------------CcccCCce
Confidence 98765432 25899999853 22 22111 11 01467799
Q ss_pred EccCCCEEEEEcC
Q psy11412 264 LSLDGKRIYVSSS 276 (290)
Q Consensus 264 ~sPDG~~L~Van~ 276 (290)
|||||++||.++.
T Consensus 479 ~spdG~~l~~~s~ 491 (1045)
T 1k32_A 479 FDADSKNLYYLSY 491 (1045)
T ss_dssp ECTTSCEEEEEES
T ss_pred EcCCCCEEEEEec
Confidence 9999999988765
No 218
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.1e-06 Score=76.67 Aligned_cols=111 Identities=11% Similarity=0.191 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.+..+++ ||+++|++++. +|.|++||+.+ ......+..+ .....
T Consensus 20 ~v~~~~~-~~~~~l~s~~~-dg~v~vw~~~~---~~~~~~~~~~-------------------------------~~~v~ 63 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR-DGTVRLWSKDD---QWLGTVVYTG-------------------------------QGFLN 63 (313)
T ss_dssp CEEEEEE-EETTEEEEEET-TSEEEEEEESS---SEEEEEEEEC-------------------------------SSCEE
T ss_pred CcEEEEe-cCCCEEEEEEc-CCcEEEEECCC---CEEEEEeecC-------------------------------CccEE
Confidence 5788999 99999988875 89999999954 2332222221 14678
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.++|+|++++|++++. ++ .+..+++.+....+.+... .+ .......+.+ ++++
T Consensus 64 ~~~~~~~~~~l~~~~~---------------dg-~i~~~~~~~~~~~~~~~~~-----~~----~~~~i~~~~~--~~~~ 116 (313)
T 3odt_A 64 SVCYDSEKELLLFGGK---------------DT-MINGVPLFATSGEDPLYTL-----IG----HQGNVCSLSF--QDGV 116 (313)
T ss_dssp EEEEETTTTEEEEEET---------------TS-CEEEEETTCCTTSCC-CEE-----CC----CSSCEEEEEE--ETTE
T ss_pred EEEECCCCCEEEEecC---------------CC-eEEEEEeeecCCCCcccch-----hh----cccCEEEEEe--cCCE
Confidence 8999999999998765 12 2222333221101111110 00 1134556666 7889
Q ss_pred EEEEeCCCCcEEEEE
Q psy11412 194 LYTSNWMHGDIRQYD 208 (290)
Q Consensus 194 Lyvs~r~~~~V~v~D 208 (290)
|+++. .++.|.+||
T Consensus 117 l~~~~-~d~~i~~~d 130 (313)
T 3odt_A 117 VISGS-WDKTAKVWK 130 (313)
T ss_dssp EEEEE-TTSEEEEEE
T ss_pred EEEEe-CCCCEEEEc
Confidence 88888 689999998
No 219
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.71 E-value=5.3e-07 Score=85.99 Aligned_cols=139 Identities=9% Similarity=0.011 Sum_probs=77.8
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCCceeeeEEeecccccCCCceEE
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV 88 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v 88 (290)
+-.+|+...+++.... .....|++++++++|+ ||+++.... .-.++.+...........+
T Consensus 163 ~I~~id~~~g~v~~~~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-------------- 224 (433)
T 4hw6_A 163 AFRHVDFVNQYVDIKT---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL-------------- 224 (433)
T ss_dssp CEEEEETTTTEEEEEC---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE--------------
T ss_pred CEEEEECCCCEEEEee---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc--------------
Confidence 3445666666655443 2344799999999999 999987431 1112222111100000000
Q ss_pred ecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCc
Q psy11412 89 IDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~ 168 (290)
.....|++++++|+...||+++...+. +..++..+ ......+..
T Consensus 225 ------------------~~~~~P~giavd~~~G~lyv~d~~~~~---------------V~~~d~~~---g~~~~~~~~ 268 (433)
T 4hw6_A 225 ------------------CNARGAKTCAVHPQNGKIYYTRYHHAM---------------ISSYDPAT---GTLTEEEVM 268 (433)
T ss_dssp ------------------EECSSBCCCEECTTTCCEEECBTTCSE---------------EEEECTTT---CCEEEEEEE
T ss_pred ------------------cccCCCCEEEEeCCCCeEEEEECCCCE---------------EEEEECCC---CeEEEEEec
Confidence 012579999999976679987652221 11111100 000000000
Q ss_pred cccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 169 SSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
......+..|+|+|||++||+++..++.|..++..
T Consensus 269 -------~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 269 -------MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp -------CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred -------cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 00112345799999999999999999999999874
No 220
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.71 E-value=1.2e-06 Score=81.64 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=77.2
Q ss_pred CceEEEEEcC--CCC-EEEEEeCC--CCeEEEEEcCCCCCc-eeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412 33 AMVTDILISL--DDR-YLYTSNWM--HGDIRQYDIRDTAHP-VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR 106 (290)
Q Consensus 33 ~~p~~va~Sp--DGr-~Lyva~~~--~g~V~v~dv~d~~~~-~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 106 (290)
-.|+++.+.+ ||+ +|||+|.. ..+|.+|+++..+.. ..+.++. +
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-g----------------------------- 161 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-H----------------------------- 161 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-C-----------------------------
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-c-----------------------------
Confidence 3899999977 465 89999876 678999998653221 2222211 1
Q ss_pred ccCCCceEEEEccCCCEEEEEcCCCCCcceeeccc--ccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412 107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD--LVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD 184 (290)
Q Consensus 107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~--~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~ 184 (290)
..-..|..+++.++|+ +|++|-..-+-..+...+ .....+.+..++. ..+.. + ...-..|.+
T Consensus 162 ~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------~~~~~-----~----~~~l~~pNG 225 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------NDVRV-----V----AEGFDFANG 225 (355)
T ss_dssp TTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT------TCCEE-----E----EEEESSEEE
T ss_pred CCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC------CeEEE-----e----ecCCcccCc
Confidence 0125799999999996 777764210000000000 0001112221111 00100 0 000135788
Q ss_pred EEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 185 ILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
|+|||||++||+++...+.|.+||+..
T Consensus 226 ia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 226 INISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 999999999999998889999999964
No 221
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.71 E-value=5.3e-08 Score=94.69 Aligned_cols=113 Identities=8% Similarity=-0.043 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412 35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM 114 (290)
Q Consensus 35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~ 114 (290)
....++||||+.++.+....+.+.+||+... ..+.+. .+ .. ..
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~l~---~~--------------------------------~~-~~ 154 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRELA---RL--------------------------------PG-FG 154 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEEEE---EE--------------------------------SS-CE
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEEee---cC--------------------------------CC-ce
Confidence 4467899999765444334566679998642 222221 11 12 67
Q ss_pred EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412 115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL 194 (290)
Q Consensus 115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L 194 (290)
++|||||++|+.++.... ....+..+++.. .+ ...+ . ........++|||||++|
T Consensus 155 ~~~spDG~~la~~~~~~~------------~~~~i~~~d~~~---g~-~~~l-----~----~~~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGG------------GRVSLFTSNLSS---GG-LRVF-----D----SGEGSFSSASISPGMKVT 209 (582)
T ss_dssp EEEEEETTEEEEEEEEET------------TEEEEEEEETTT---CC-CEEE-----C----CSSCEEEEEEECTTSCEE
T ss_pred EEECCCCCEEEEEEEcCC------------CCeEEEEEcCCC---CC-ceEe-----e----cCCCccccceECCCCCEE
Confidence 899999999997654100 001122222111 11 1110 0 012345789999999999
Q ss_pred EEEeCCCC--cEEEEEec
Q psy11412 195 YTSNWMHG--DIRQYDIR 210 (290)
Q Consensus 195 yvs~r~~~--~V~v~Dv~ 210 (290)
|.++ .++ .|.+||+.
T Consensus 210 ~~~~-~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 210 AGLE-TAREARLVTVDPR 226 (582)
T ss_dssp EEEE-CSSCEEEEEECTT
T ss_pred EEcc-CCCeeEEEEEcCC
Confidence 9766 455 79999884
No 222
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.71 E-value=9.7e-08 Score=85.62 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
+..++.|+ |++||+++...|.|+++|+.+ .+++.++ ++ ..+.
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~T---gkv~~~~-l~--------------------------------~~~F 97 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLES---AQPVWME-RL--------------------------------GNIF 97 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSC---SSCSEEE-EC--------------------------------TTCC
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCC---CcEEeEE-CC--------------------------------CCcc
Confidence 45688886 689999998889999999865 4444444 43 1233
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+..++++|++||+++.. .+.+.++|..+ .+.+.+++.. . .+..+++||++
T Consensus 98 geGit~~g~~Ly~ltw~---------------~~~v~V~D~~T---l~~~~ti~~~-~-----------eGwGLt~Dg~~ 147 (268)
T 3nok_A 98 AEGLASDGERLYQLTWT---------------EGLLFTWSGMP---PQRERTTRYS-G-----------EGWGLCYWNGK 147 (268)
T ss_dssp EEEEEECSSCEEEEESS---------------SCEEEEEETTT---TEEEEEEECS-S-----------CCCCEEEETTE
T ss_pred eeEEEEeCCEEEEEEcc---------------CCEEEEEECCc---CcEEEEEeCC-C-----------ceeEEecCCCE
Confidence 33345678899998752 22333333332 2333333321 1 12446689999
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
||+|+ ++++|+++|. .+.+.+++|.++.
T Consensus 148 L~vSd-Gs~~l~~iDp---~T~~v~~~I~V~~ 175 (268)
T 3nok_A 148 LVRSD-GGTMLTFHEP---DGFALVGAVQVKL 175 (268)
T ss_dssp EEEEC-SSSEEEEECT---TTCCEEEEEECEE
T ss_pred EEEEC-CCCEEEEEcC---CCCeEEEEEEeCC
Confidence 99999 7999999864 4577888888754
No 223
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.70 E-value=6.1e-07 Score=78.40 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=89.6
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 33 AMVTDILISL-DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 33 ~~p~~va~Sp-DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
..+..++++| ++.+|+++.. +|.|.+||.. +....+... ....
T Consensus 143 ~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~-----~~~~~~~~~------------------------------~~~~ 186 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFLTASA-DKTIKLWQND-----KVIKTFSGI------------------------------HNDV 186 (313)
T ss_dssp SCEEEEEEEETTTTEEEEEET-TSCEEEEETT-----EEEEEECSS------------------------------CSSC
T ss_pred CceeEEEEccCCCCEEEEEEC-CCCEEEEecC-----ceEEEEecc------------------------------Cccc
Confidence 3567888888 9999988875 7899999932 222211110 0146
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
...++|+|+++ +++.+. ++.+..++... .+.+..+. ........++|+|||
T Consensus 187 i~~~~~~~~~~-~~~~~~----------------dg~i~i~d~~~---~~~~~~~~---------~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSN----------------DGLIKLVDMHT---GDVLRTYE---------GHESFVYCIKLLPNG 237 (313)
T ss_dssp EEEEEEEETTE-EEEEET----------------TSEEEEEETTT---CCEEEEEE---------CCSSCEEEEEECTTS
T ss_pred EEEEEEcCCCe-EEEccC----------------CCeEEEEECCc---hhhhhhhh---------cCCceEEEEEEecCC
Confidence 78899999999 555543 12333333321 11111110 012457789999999
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 192 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
+ |+++. .++.|.+||+.+ .+.+..+.... +....++|+|||+++
T Consensus 238 ~-l~~~~-~dg~v~iwd~~~---~~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~~ 281 (313)
T 3odt_A 238 D-IVSCG-EDRTVRIWSKEN---GSLKQVITLPA-------------------------------ISIWSVDCMSNGDII 281 (313)
T ss_dssp C-EEEEE-TTSEEEEECTTT---CCEEEEEECSS-------------------------------SCEEEEEECTTSCEE
T ss_pred C-EEEEe-cCCEEEEEECCC---CceeEEEeccC-------------------------------ceEEEEEEccCCCEE
Confidence 5 55665 689999999854 33444332211 146889999999955
Q ss_pred EEEcC-CCCCCC
Q psy11412 272 YVSSS-LFSPWD 282 (290)
Q Consensus 272 ~Van~-~~~~~~ 282 (290)
..+.. .+.-|+
T Consensus 282 ~~~~dg~i~iw~ 293 (313)
T 3odt_A 282 VGSSDNLVRIFS 293 (313)
T ss_dssp EEETTSCEEEEE
T ss_pred EEeCCCcEEEEe
Confidence 54433 444454
No 224
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.69 E-value=7.6e-08 Score=93.58 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR 63 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~ 63 (290)
.+++++|||||++|+.+...+|++.+|+++
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~ 52 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD 52 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEc
Confidence 377899999999998876558899999984
No 225
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.67 E-value=4.1e-07 Score=84.41 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.+++++|||+ |||+... |.|.+++ .+ +. +.+..+.+- .....+|.
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~-g~I~~~d-~~-G~-~~~~~~~v~----------------------------~~g~~g~~ 76 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERP-GRLVLIS-PS-GK-KLVASFDVA----------------------------NVGEAGLL 76 (354)
T ss_dssp CEEEEEEEETTE-EEEEETT-TEEEEEC-SS-CE-EEEEECCCC----------------------------CSTTCSEE
T ss_pred CCeEEEEcCCCe-EEEEeCC-CEEEEEe-CC-Cc-eEeecccee----------------------------ecCCCcee
Confidence 699999999997 8888874 8998886 22 22 332221100 00025799
Q ss_pred EEEEccC---CCEEEEEcC
Q psy11412 114 MFQLSLD---GKRIYVSSS 129 (290)
Q Consensus 114 ~vafsPd---G~~lYv~ne 129 (290)
+|+|+|| +++|||+..
T Consensus 77 gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 77 GLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp EEEECTTTTTSCEEEEEEE
T ss_pred eEEeCCCCCcCCEEEEEEe
Confidence 9999999 889999864
No 226
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=1.1e-06 Score=85.37 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=87.1
Q ss_pred eEEEEEecCCCccCCCCCCC-CCCCceEEEEE-------cCCCCEEEEEeCCCCe------EEEEEcCCCCCcee-e--e
Q psy11412 10 KADKVIDIPAKQVQGYPGGD-KVPAMVTDILI-------SLDDRYLYTSNWMHGD------IRQYDIRDTAHPVL-V--G 72 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~v~~~p~~va~-------SpDGr~Lyva~~~~g~------V~v~dv~d~~~~~~-~--~ 72 (290)
..-++||...+++..-.... ..-..|++|+| +++|++||++++.++. |.+++....+.... . .
T Consensus 162 ~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~ 241 (496)
T 3kya_A 162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ 241 (496)
T ss_dssp EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEE
T ss_pred CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccce
Confidence 34567888877765432110 11236999999 9999999999987633 55554322111100 0 0
Q ss_pred EEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecc
Q psy11412 73 QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSD 152 (290)
Q Consensus 73 ~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~ 152 (290)
.+. .+.+|.+++++|++++||+++...+ .+.++
T Consensus 242 ~v~--------------------------------~~~~p~giavdp~~g~LYvtd~~~g---------------~V~r~ 274 (496)
T 3kya_A 242 LIA--------------------------------AYKQCNGATIHPINGELYFNSYEKG---------------QVFRL 274 (496)
T ss_dssp EEE--------------------------------EESCCCCEEECTTTCCEEEEETTTT---------------EEEEE
T ss_pred eec--------------------------------cCCCceEEEEcCCCCeEEEEECCCC---------------EEEEE
Confidence 110 1257899999999999999876322 22222
Q ss_pred eeee----eeeccc---ccccCcccc-CccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 153 EIME----FIQRNE---MRSMPLSSL-GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 153 ~~~~----~~~~~~---i~~~p~~~~-~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
+... ...... ......+.. .....+....+++|+|+|||++||+++..++.|..+|..
T Consensus 275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 2210 000000 000000000 000112234678999999999999999999999998874
No 227
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.65 E-value=2.8e-07 Score=87.48 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=94.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
....+++++++.+|++++. + .|.+|+..+.... . ..+.. ...+ .. ..+. ........+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~-d-gv~v~~~~~~~~~---~--~~~~~---~~~~--~~-----~~~~----~~~~~~~~v~ 96 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGA-S-GLQIFPTKNLLIQ---N--KPGDD---PNKI--VD-----KVQG----LLVPMKFPIH 96 (434)
T ss_dssp CCBCEEEETTTTEEEEEET-T-EEEEEEHHHHCCC---C--CTTCC---TTCE--EE-----CCCC----EEECCSSCEE
T ss_pred CccEEEEecCCCEEEEECC-C-EEEEEEchHhhhh---c--ccccC---cccc--cc-----cCcc----ccccCCCccc
Confidence 4567999999999998875 3 4999886431000 0 00000 0000 00 0000 0001124688
Q ss_pred EEEEccCCCEEEE---EcCCCCCcceeecccccCCCceeecceeeeee-----ecccccccCccccCccccCCCCceeEE
Q psy11412 114 MFQLSLDGKRIYV---SSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFI-----QRNEMRSMPLSSLGSWKYPARSMVTDI 185 (290)
Q Consensus 114 ~vafsPdG~~lYv---~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~-----~~~~i~~~p~~~~~~~~~~~~~~~~~i 185 (290)
.++|+|||++|++ ++.. ++.+.+|++.... ..+.+..+.. ..+ ....+..+
T Consensus 97 ~l~~spdg~~lav~~~sgs~---------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~----h~~~V~~v 155 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEY---------------GSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKD----AGGMVIDM 155 (434)
T ss_dssp EEEECTTSCEEEEEEEETTT---------------EEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCS----GGGSEEEE
T ss_pred EEEEcCCCCEEEEEEeccCC---------------CceEEEEEccccccCCcCCcceeeeeec--cCC----CCCceEEE
Confidence 9999999999997 3331 2233334432210 0000000000 000 12457889
Q ss_pred EEccC-CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412 186 LISLD-DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL 264 (290)
Q Consensus 186 ~~SpD-Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~ 264 (290)
+|+|+ ++.|+++. .+++|.+||+... ..+... .+. ...+..++|
T Consensus 156 ~~~p~~~~~las~s-~Dg~v~iwD~~~~---~~~~~~-~~~------------------------------~~~v~~v~w 200 (434)
T 2oit_A 156 KWNPTVPSMVAVCL-ADGSIAVLQVTET---VKVCAT-LPS------------------------------TVAVTSVCW 200 (434)
T ss_dssp EECSSCTTEEEEEE-TTSCEEEEEESSS---EEEEEE-ECG------------------------------GGCEEEEEE
T ss_pred EECCCCCCEEEEEE-CCCeEEEEEcCCC---cceeec-cCC------------------------------CCceeEEEE
Confidence 99998 77777666 6899999999642 221111 111 125789999
Q ss_pred ccCCCEEEEEcC--CCCCCCc
Q psy11412 265 SLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 265 sPDG~~L~Van~--~~~~~~~ 283 (290)
+|||++|++++. ...-||.
T Consensus 201 spdg~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 201 SPKGKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp CTTSSCEEEEETTSCEEEECT
T ss_pred cCCCCEEEEEcCCCcEEEEcc
Confidence 999999999976 4555654
No 228
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.65 E-value=1.3e-06 Score=76.00 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCC
Q psy11412 32 PAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGS 111 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~g 111 (290)
...|.+++++++|+ ||+++...+.|.+||. + +.... +.... ....
T Consensus 140 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~-g~~~~---~~~~~-----------------------------~~~~ 184 (299)
T 2z2n_A 140 GSYPSFITLGSDNA-LWFTENQNNAIGRITE-S-GDITE---FKIPT-----------------------------PASG 184 (299)
T ss_dssp TCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEEE---EECSS-----------------------------TTCC
T ss_pred CCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-C-CcEEE---eeCCC-----------------------------CCCc
Confidence 34799999999995 6778777789999987 3 22221 11110 0257
Q ss_pred ceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccC-CCCceeEEEEccC
Q psy11412 112 SQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYP-ARSMVTDILISLD 190 (290)
Q Consensus 112 Pr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~~~~~i~~SpD 190 (290)
|.+++++++|+ ||+++...+ .+..++. + ..+... ..+ ....+.+|++++|
T Consensus 185 ~~~i~~~~~g~-l~v~~~~~~---------------~i~~~~~-~----g~~~~~--------~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 185 PVGITKGNDDA-LWFVEIIGN---------------KIGRITT-S----GEITEF--------KIPTPNARPHAITAGAG 235 (299)
T ss_dssp EEEEEECTTSS-EEEEETTTT---------------EEEEECT-T----CCEEEE--------ECSSTTCCEEEEEECST
T ss_pred ceeEEECCCCC-EEEEccCCc---------------eEEEECC-C----CcEEEE--------ECCCCCCCceeEEECCC
Confidence 89999999998 787764222 2222221 1 000000 011 1246788999999
Q ss_pred CCEEEEEeCCCCcEEEEEe
Q psy11412 191 DRYLYTSNWMHGDIRQYDI 209 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv 209 (290)
|+ ||+++..++.|.+||.
T Consensus 236 g~-l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 ID-LWFTEWGANKIGRLTS 253 (299)
T ss_dssp TC-EEEEETTTTEEEEEET
T ss_pred CC-EEEeccCCceEEEECC
Confidence 98 8999878889999987
No 229
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.63 E-value=4.2e-08 Score=99.16 Aligned_cols=117 Identities=9% Similarity=0.048 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.+|++++.++.||+++...+.|.+++... ...+.+ +..+ ...|+
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l--~~~~-------------------------------~~~P~ 499 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL--FREQ-------------------------------GSKPR 499 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSS-CCEEEE--CCCS-------------------------------SCCCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCC-CceEEE--EeCC-------------------------------CCCcc
Confidence 6889999999999999999889999998743 211111 0000 15799
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
+|+++|++++||+++... ...+.+++... .....+.. ..-..|.+|+|+|++++
T Consensus 500 giavDp~~g~ly~td~~~--------------~~~I~~~~~dG-~~~~~l~~-----------~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 500 AIVVDPVHGFMYWTDWGT--------------PAKIKKGGLNG-VDIYSLVT-----------ENIQWPNGITLDLLSGR 553 (699)
T ss_dssp CEECCSSSSCCEECCCSS--------------SCCEEBCCSSS-CCCCEESC-----------SSCSSCCCEEECTTTCC
T ss_pred eEEEccCCCcEEEcccCC--------------CCeEEEEeCCC-CCeeEEEe-----------CCCCCccEEEEeccCCE
Confidence 999999999999976421 01111111100 00000000 01135678999999999
Q ss_pred EEEEeCCCCcEEEEEec
Q psy11412 194 LYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~ 210 (290)
||+++...+.|.++|+.
T Consensus 554 LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVN 570 (699)
T ss_dssp EEEEETTTTEEEEECSS
T ss_pred EEEEecCCCeEEEEccC
Confidence 99999988999999884
No 230
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=98.63 E-value=1e-06 Score=77.32 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=95.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.....++++++|++|+++.. +++|++||+............... .....
T Consensus 151 ~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~------------------------------~~~~v 199 (318)
T 4ggc_A 151 QEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPGEGGWVPLQTFTQ------------------------------HQGAV 199 (318)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSCEEEEESSCBTTBSCCSEEECC------------------------------CCSCE
T ss_pred CceEEEEEcCCCCEEEEEec-CcceeEEECCCCcccccceeeecc------------------------------cCCce
Confidence 35778999999999988775 899999999753211111000000 01456
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
..++++|++..+....... ..+.+.+++... ...... .........+.++|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-------------~~~~i~lwd~~~---~~~~~~----------~~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGT-------------SDRHIRIWNVCS---GACLSA----------VDAHSQVCSILWSPHYK 253 (318)
T ss_dssp EEEEECTTSTTEEEEEECT-------------TTCEEEEEETTT---CCEEEE----------EECSSCEEEEEEETTTT
T ss_pred EEEEecCCCCcEEEEEecC-------------CCCEEEEEeccc---cccccc----------ccceeeeeeeeeccccc
Confidence 7789999887665432210 111222222111 010100 00123456789999999
Q ss_pred EEEEEe-CCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEE
Q psy11412 193 YLYTSN-WMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRI 271 (290)
Q Consensus 193 ~Lyvs~-r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L 271 (290)
.++++. -.++.|.+||+.. .+.+.++. |. .+....++|+|||++|
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~---~~~~~~l~-gH------------------------------~~~V~~l~~spdg~~l 299 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPT---MAKVAELK-GH------------------------------TSRVLSLTMSPDGATV 299 (318)
T ss_dssp EEEEEECTTTCCEEEEETTT---CCEEEEEC-CC------------------------------SSCEEEEEECTTSSCE
T ss_pred ceEEEEEcCCCEEEEEECCC---CcEEEEEc-CC------------------------------CCCEEEEEEcCCCCEE
Confidence 998754 3578999999854 34444432 22 1247889999999999
Q ss_pred EEEcC--CCCCCC
Q psy11412 272 YVSSS--LFSPWD 282 (290)
Q Consensus 272 ~Van~--~~~~~~ 282 (290)
+.+.. +..-|+
T Consensus 300 ~S~s~D~~v~iWd 312 (318)
T 4ggc_A 300 ASAAADETLRLWR 312 (318)
T ss_dssp EEEETTTEEEEEC
T ss_pred EEEecCCeEEEEE
Confidence 98865 555665
No 231
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.63 E-value=4.6e-07 Score=83.93 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=43.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCce-eeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV-LVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~-~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.|.+|++.|||++|||+.. .|.|.+++- + +... .+..+. .+ . .....++
T Consensus 19 ~P~~i~~~pdG~~l~V~e~-~G~i~~~~~-~-g~~~~~~~~~~---------~v-----------~-------~~g~~g~ 68 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLR-GGELRHWQA-G-KGLSAPLSGVP---------DV-----------W-------AHGQGGL 68 (353)
T ss_dssp SEEEEEECSTTCCEEEEET-TTEEEEEET-T-TEECCCCBSCC---------CC-----------C-------CSTTCSE
T ss_pred CcEEEEEcCCCCEEEEEeC-CceEEEEeC-C-CceeeEecCCc---------cc-----------c-------cCCCCCc
Confidence 7999999999997888886 589998873 2 1111 111000 00 0 0012588
Q ss_pred eEEEEccC---CCEEEEEcC
Q psy11412 113 QMFQLSLD---GKRIYVSSS 129 (290)
Q Consensus 113 r~vafsPd---G~~lYv~ne 129 (290)
.+|+|+|| +++||++..
T Consensus 69 ~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 69 LDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp EEEEECTTHHHHCEEEEEEE
T ss_pred eeEEECCCCCCCCEEEEEEe
Confidence 99999998 889999854
No 232
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.62 E-value=1.1e-06 Score=81.64 Aligned_cols=172 Identities=14% Similarity=0.187 Sum_probs=106.1
Q ss_pred CceEEEEE--cCC-CC-EEEEEeCCCCeEEEEEcCCCCCc----eeeeEEeecccccCCCceEEecCCCCcCCCCcceee
Q psy11412 33 AMVTDILI--SLD-DR-YLYTSNWMHGDIRQYDIRDTAHP----VLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIK 104 (290)
Q Consensus 33 ~~p~~va~--SpD-Gr-~Lyva~~~~g~V~v~dv~d~~~~----~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (290)
..|+++++ +|+ |+ ++||++. +|.+..|++.+.+.. +++.++.+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f~l---------------------------- 178 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAFKM---------------------------- 178 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEEEC----------------------------
T ss_pred CCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEecC----------------------------
Confidence 57889999 885 54 7888876 589999999654332 33444433
Q ss_pred ccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeE
Q psy11412 105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD 184 (290)
Q Consensus 105 ~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~ 184 (290)
++.|.++++++...+||++.|..+.|-...-++ .+.. .+.+..++.+ .+ ...+.+
T Consensus 179 ----gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~---~~~~-----------~~~v~~~~~g-----~l--~aDvEG 233 (355)
T 3amr_A 179 ----NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPD---GGSN-----------GTVIDRADGR-----HL--TRDIEG 233 (355)
T ss_dssp ----SSCEEEEEEETTTTEEEEEETTTEEEEEECSTT---SCSC-----------CEEEEEBSSS-----SB--CSCEEE
T ss_pred ----CCCcceEEEcCCCCeEEEecccceEEEEeCCcC---CCCC-----------ceEEEEecCC-----cc--ccCcce
Confidence 368999999999999999988433222110010 0000 0111111100 00 124677
Q ss_pred EEE--ccCCC-EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeeccccc-CCcc
Q psy11412 185 ILI--SLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT-GSSQ 260 (290)
Q Consensus 185 i~~--SpDGr-~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~P~ 260 (290)
|++ .+||+ +|++|+.++++..|||... ..+.++.+.+|... + -+.+++.++. .+....+| ..|+
T Consensus 234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~~--~~~~vg~f~Ig~~~--~-idgv~eTDG~-------~v~~~~lG~~fP~ 301 (355)
T 3amr_A 234 LTIYYAADGKGYLMASSQGNSSYAIYDRQG--KNKYVADFRITDGP--E-TDGTSDTDGI-------DVLGFGLGPEYPF 301 (355)
T ss_dssp EEEEECGGGCEEEEEEEGGGTEEEEEESST--TCCEEEEEEECCCS--S-SCCCCSCCCE-------EEECSCCSTTCTT
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECCC--CCcEEEEEEecCCC--C-ceeeeccCcc-------eEEccccCCCCCC
Confidence 888 78888 8999999999999999852 35688888887531 0 1222232221 12233344 3799
Q ss_pred eEEEccCCCE
Q psy11412 261 MFQLSLDGKR 270 (290)
Q Consensus 261 ~~a~sPDG~~ 270 (290)
++.+..||+.
T Consensus 302 Gl~V~qDg~n 311 (355)
T 3amr_A 302 GIFVAQDGEN 311 (355)
T ss_dssp CEEEEEESSC
T ss_pred cEEEEecCCc
Confidence 9999999964
No 233
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=98.61 E-value=7.6e-06 Score=71.66 Aligned_cols=192 Identities=9% Similarity=0.043 Sum_probs=106.3
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~ 92 (290)
++-|+..++.....-...-...+..++++|+|++|+++.. +|+|++|++.+ .+.+.... +
T Consensus 48 ~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~-Dg~v~iw~~~~---~~~~~~~~-~--------------- 107 (318)
T 4ggc_A 48 YLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-SAEVQLWDVQQ---QKRLRNMT-S--------------- 107 (318)
T ss_dssp EEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-TSEEEEEETTT---TEEEEEEE-C---------------
T ss_pred EEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC-CCcEEEeecCC---ceeEEEec-C---------------
Confidence 4456665554433200011235789999999999998775 89999999965 33333221 1
Q ss_pred CCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccC
Q psy11412 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLG 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~ 172 (290)
.......++++++.++..+.. + .+..++... ....+.. ..
T Consensus 108 -----------------h~~~~~~~~~~~~~l~s~~~~---------------~-~~~~~~~~~--~~~~~~~-----~~ 147 (318)
T 4ggc_A 108 -----------------HSARVGSLSWNSYILSSGSRS---------------G-HIHHHDVRV--AEHHVAT-----LS 147 (318)
T ss_dssp -----------------CSSCEEEEEEETTEEEEEETT---------------S-EEEEEETTS--SSCEEEE-----EE
T ss_pred -----------------ccceEEEeecCCCEEEEEecC---------------C-ceEeeecCC--CceeEEE-----Ec
Confidence 123446778888888876541 1 111111100 0000000 00
Q ss_pred ccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCce-E----------eeEE---eeCce------ecCCCc
Q psy11412 173 SWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV-L----------VGQI---FLGGK------IQSDSG 232 (290)
Q Consensus 173 ~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~-~----------v~~i---~~Gg~------~~~~~~ 232 (290)
........+.++++|++|+++. .++.|.+||+....... . +..+ +.+.. -..+++
T Consensus 148 ----~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 148 ----GHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred ----CccCceEEEEEcCCCCEEEEEe-cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence 0123466789999999999888 68999999996422110 0 0000 00110 034566
Q ss_pred eEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEEEEc
Q psy11412 233 VTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSS 275 (290)
Q Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van 275 (290)
|.+++..... .............+.|+|+++.++++.
T Consensus 223 i~lwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 223 IRIWNVCSGA------CLSAVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp EEEEETTTCC------EEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeccccc------ccccccceeeeeeeeecccccceEEEE
Confidence 7787754321 011111123578899999999999875
No 234
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=98.59 E-value=1.3e-06 Score=79.98 Aligned_cols=128 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCe-EEEEEcCCCCCceeeeEEeec-ccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGD-IRQYDIRDTAHPVLVGQIFLG-GKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~-V~v~dv~d~~~~~~~~~i~~g-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
+.+..++|+|||++|++++. +++ |++||+.+ .+.+..+..| + ..
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~-d~~~v~iwd~~~---~~~~~~~~~g~h------------------------------~~ 241 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQ-DGTIIRVFKTED---GVLVREFRRGLD------------------------------RA 241 (355)
T ss_dssp SCEEEEEECTTSSEEEEEET-TCSEEEEEETTT---CCEEEEEECTTC------------------------------CS
T ss_pred CceEEEEECCCCCEEEEEeC-CCCEEEEEECCC---CcEEEEEEcCCC------------------------------CC
Confidence 46789999999999998875 788 99999975 3334333322 1 14
Q ss_pred CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeec--ccccc--cCccccCccc-----cCCC--
Q psy11412 111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQR--NEMRS--MPLSSLGSWK-----YPAR-- 179 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~--~~i~~--~p~~~~~~~~-----~~~~-- 179 (290)
....++|||||++|++++.. + .+.+|++...... ..+.. .+......|. ++..
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d-~---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDK-W---------------TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp CEEEEEECTTSCEEEEEETT-C---------------EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred cEEEEEECCCCCEEEEEECC-C---------------EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 67889999999999987652 1 2222222110000 00000 0000000110 1111
Q ss_pred CceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 180 ~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
.....+++++||++|++.. .++.+.+|++..
T Consensus 306 ~~~~~~a~~~d~~~l~~~~-~dg~~~~~~~~~ 336 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWP-HTRMIETFKVVF 336 (355)
T ss_dssp CCCCEEEESSSSEEEEEET-TTTEEEEEEEEE
T ss_pred CCceEEEEeCCCCEEEEEe-CCCeEEEEEEEc
Confidence 1125589999999999888 689999999853
No 235
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.58 E-value=5.9e-07 Score=81.74 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=35.1
Q ss_pred CCceeEEEEEecCCCccCCCCCCCCCCCce-EEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 6 DGTYKADKVIDIPAKQVQGYPGGDKVPAMV-TDILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p-~~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
+|+++ -.++|+..++....+ ...... .++++||||++|+.+.. ++.|.+||+..
T Consensus 57 ~g~~~-l~~~d~~~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~ 111 (388)
T 3pe7_A 57 DGPWN-YYLLDLNTQVATQLT---EGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLAT 111 (388)
T ss_dssp TSSCE-EEEEETTTCEEEECC---CSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTT
T ss_pred CCCce-EEEEeCCCCceEEee---eCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCC
Confidence 45443 356777766544332 122222 25689999999998875 57999999975
No 236
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.58 E-value=1.3e-06 Score=87.04 Aligned_cols=117 Identities=7% Similarity=-0.012 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..|.++|+++.++.||+++...+.|.+++.+. ...+.+. .+ ....|
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~---~~------------------------------~l~~P 129 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLF---WQ------------------------------ELDQP 129 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CS------------------------------SCSCC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEE---eC------------------------------CCCCC
Confidence 37999999999999999999999999999853 2222221 01 01579
Q ss_pred eEEEEccCCCEEEEEcCCC-CCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLF-SPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDD 191 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~-~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDG 191 (290)
+.|+++|.+.+||+++-.. ..+.+.. -+|... ..+.. .....|.+|++++++
T Consensus 130 ~~Iavdp~~g~ly~tD~g~~~~I~r~~-----~dG~~~-----------~~l~~-----------~~~~~P~Glald~~~ 182 (619)
T 3s94_A 130 RAIALDPSSGFMYWTDWGEVPKIERAG-----MDGSSR-----------FIIIN-----------SEIYWPNGLTLDYEE 182 (619)
T ss_dssp CCEEEETTTTEEEEEECSSSCEEEEEE-----TTSCSC-----------EEEEC-----------SSCSSEEEEEEETTT
T ss_pred ceEEEecCCCeEEEeccCCCCEEEEEE-----CCCCce-----------EEEEe-----------CCCCCCcEEEEEccC
Confidence 9999999999999986311 1111100 011100 00100 012468899999999
Q ss_pred CEEEEEeCCCCcEEEEEec
Q psy11412 192 RYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 192 r~Lyvs~r~~~~V~v~Dv~ 210 (290)
++||+++...+.|..+|+.
T Consensus 183 ~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp TEEEEEETTTCCEEEESSS
T ss_pred CEEEEEeCCCCeEEEecCC
Confidence 9999999989999999884
No 237
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.57 E-value=6.5e-07 Score=87.98 Aligned_cols=31 Identities=3% Similarity=-0.077 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCEEEEEeCC---------CCeEEEEEcCC
Q psy11412 34 MVTDILISLDDRYLYTSNWM---------HGDIRQYDIRD 64 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~---------~g~V~v~dv~d 64 (290)
.+.+++|||||++|+.+... ..+|.+||+..
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 56789999999999877642 14788888854
No 238
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.57 E-value=4e-07 Score=90.49 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=36.0
Q ss_pred eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
..-.+.|+..++..... .+......+++||||++|+.+. +++|.+|++..
T Consensus 90 ~~i~~~d~~~g~~~~~~---~l~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~ 139 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGN---ELPRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPG 139 (719)
T ss_dssp EEEEEEETTTTEECCSS---CCCSSBCCEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred eEEEEEECCCCccccce---ecCcccccceECCCCCEEEEEE--CCeEEEEeCCC
Confidence 45567777776652211 3445677899999999998775 57999999865
No 239
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.56 E-value=3.8e-06 Score=78.48 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=100.8
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412 39 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118 (290)
Q Consensus 39 a~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs 118 (290)
++++++++|+++.. +|+|++||+.+ .+.+..+. ++ ...+..++|+
T Consensus 127 ~~~~~~~~l~sgs~-dg~i~vwd~~~---~~~~~~~~-~h------------------------------~~~V~~l~~~ 171 (464)
T 3v7d_B 127 CLQFEDNYVITGAD-DKMIRVYDSIN---KKFLLQLS-GH------------------------------DGGVWALKYA 171 (464)
T ss_dssp EEEEETTEEEEEET-TSCEEEEETTT---TEEEEEEC-CC------------------------------SSCEEEEEEC
T ss_pred EEEECCCEEEEEcC-CCcEEEEECCC---CcEEEEEe-CC------------------------------CcCEEEEEEc
Confidence 34557888887764 89999999865 33333322 11 1467889999
Q ss_pred cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc--cCCCEEEE
Q psy11412 119 LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS--LDDRYLYT 196 (290)
Q Consensus 119 PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S--pDGr~Lyv 196 (290)
|++ .|++++. ++ .+.+++..+ .+.+..+. + .......++++ +|+++|++
T Consensus 172 ~~~-~l~s~s~---------------dg-~i~vwd~~~---~~~~~~~~-----~----h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 172 HGG-ILVSGST---------------DR-TVRVWDIKK---GCCTHVFE-----G----HNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp STT-EEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEEEESSSCEEEEE
T ss_pred CCC-EEEEEeC---------------CC-CEEEEECCC---CcEEEEEC-----C----CCCccEEEEEecCCCCCEEEE
Confidence 999 6665544 22 333344322 11111100 0 12345667777 68899988
Q ss_pred EeCCCCcEEEEEecCCCCceE--------------------ee----------EEee-Ccee---cCCCceEEecCCCCC
Q psy11412 197 SNWMHGDIRQYDIRDTAHPVL--------------------VG----------QIFL-GGKI---QSDSGVTVIDDPELD 242 (290)
Q Consensus 197 s~r~~~~V~v~Dv~d~~~~~~--------------------v~----------~i~~-Gg~~---~~~~~v~~~~~~~~~ 242 (290)
+. .+++|.+||+........ +. .+.. +..+ ..+++|.++|.....
T Consensus 223 ~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 223 GS-RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp EE-TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred Ec-CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 88 689999999964321100 10 1111 1111 467889999865421
Q ss_pred CCCCcceeecccccCCcceEEEccCCCEEEEEcC--CCCCCC
Q psy11412 243 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWD 282 (290)
Q Consensus 243 ~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~ 282 (290)
. ...+.+. .+....++|+|+|++|++++. .+.-|+
T Consensus 302 ~---~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 302 C---LYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp E---EEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred E---EEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 0 0011111 135789999999999999865 444554
No 240
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.4e-06 Score=85.07 Aligned_cols=126 Identities=13% Similarity=0.012 Sum_probs=71.4
Q ss_pred CceEEEEEcCC------CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecc
Q psy11412 33 AMVTDILISLD------DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGR 106 (290)
Q Consensus 33 ~~p~~va~SpD------Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 106 (290)
+.+..++|+|+ +++|++++. +|+|++||+......... ..... .+.. .+.+.
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~-DgtvrlWd~~~~~~~~~~-~~~~~------~p~~--------------~l~~h 265 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQ-EGTINFLEIIDNATDVHV-FKMCE------KPSL--------------TLSLA 265 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEET-TSCEEEEECCCCSSSSSE-EECCC------SCSE--------------EECCT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEec-CCeEEEEEcCCCcccccc-ceeec------CceE--------------EEEcC
Confidence 45789999997 578887765 899999999653211000 00000 0000 00000
Q ss_pred ccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEE-
Q psy11412 107 RFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDI- 185 (290)
Q Consensus 107 ~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i- 185 (290)
......++|+|++ .|++.+. + +.+.++++.+. ...... ..+ ....+..|
T Consensus 266 --~~~v~sv~~s~~~-~lasgs~---------------D-gtV~lWD~~~~--~~~~~~-----~~~----H~~~V~sv~ 315 (524)
T 2j04_B 266 --DSLITTFDFLSPT-TVVCGFK---------------N-GFVAEFDLTDP--EVPSFY-----DQV----HDSYILSVS 315 (524)
T ss_dssp --TTCEEEEEESSSS-EEEEEET---------------T-SEEEEEETTBC--SSCSEE-----EEC----SSSCEEEEE
T ss_pred --CCCEEEEEecCCC-eEEEEeC---------------C-CEEEEEECCCC--CCceEE-----eec----ccccEEEEE
Confidence 1457789999975 6776554 2 34555554321 000000 000 12356677
Q ss_pred -EEccCC-CEEEEEeCCCCcEEEEEecC
Q psy11412 186 -LISLDD-RYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 186 -~~SpDG-r~Lyvs~r~~~~V~v~Dv~d 211 (290)
+++||| ++|+++. .+++|.+||+.+
T Consensus 316 ~~~s~~g~~~laS~S-~D~tvklWD~~~ 342 (524)
T 2j04_B 316 TAYSDFEDTVVSTVA-VDGYFYIFNPKD 342 (524)
T ss_dssp EECCTTSCCEEEEEE-TTSEEEEECGGG
T ss_pred EEcCCCCCeEEEEec-cCCeEEEEECCC
Confidence 679999 7777776 789999999864
No 241
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.56 E-value=2.2e-06 Score=85.51 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.++|+++.++.||+++...+.|.+.+++. ...+.+. .. ....|+
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~---~~------------------------------~l~~P~ 126 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLV---WK------------------------------DLDSPR 126 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEE---CS------------------------------SCCCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEE---eC------------------------------CCCCcc
Confidence 6999999999999999999999999999853 2222221 01 015799
Q ss_pred EEEEccCCCEEEEEcCC-CCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 114 MFQLSLDGKRIYVSSSL-FSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel-~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
.|+++|...+||+++-. ...+.... -+|... ..+. .....|.+|+|+++++
T Consensus 127 ~iavdp~~G~lY~tD~g~~~~I~r~~-----~dG~~~-----------~~l~------------~~~~~P~GlalD~~~~ 178 (628)
T 4a0p_A 127 ALALDPAEGFMYWTEWGGKPKIDRAA-----MDGSER-----------TTLV------------PNVGRANGLTIDYAKR 178 (628)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEE-----TTSCSC-----------EEEE------------CSCSSEEEEEEETTTT
T ss_pred cEEEccCCCeEEEeCCCCCCEEEEEe-----CCCCce-----------EEEE------------CCCCCcceEEEccccC
Confidence 99999998899998631 11111000 011100 0010 0124688999999999
Q ss_pred EEEEEeCCCCcEEEEEec
Q psy11412 193 YLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~ 210 (290)
+||+++...+.|..+|+.
T Consensus 179 ~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCEEEEEcCC
Confidence 999999999999999984
No 242
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.54 E-value=1.7e-06 Score=80.50 Aligned_cols=185 Identities=16% Similarity=0.185 Sum_probs=107.5
Q ss_pred EEEEecCCCccCCCCCCCCCCCceEEEEEcCCCC-------EEEEEeCC--CCeEEEEEcCCCCCceeeeEEeecccccC
Q psy11412 12 DKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDR-------YLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQS 82 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr-------~Lyva~~~--~g~V~v~dv~d~~~~~~~~~i~~g~~~~~ 82 (290)
--|.|+ ++++...+ +. +.++.|.+-|+-+ .+|+++.. .++|++|+++.. ..+ +..+ +...
T Consensus 52 L~Vydl-~G~~l~~~---~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~~~-l~~i--~~~~-- 120 (355)
T 3amr_A 52 LVVYSL-DGKMLHSY---NT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-NGT-LQSM--TDPD-- 120 (355)
T ss_dssp EEEEET-TSCEEEEE---CC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-TCC-EEEC--SCTT--
T ss_pred EEEEcC-CCcEEEEc---cC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-CCc-eeec--cccc--
Confidence 456777 44444443 22 5688888877432 57888988 899999998532 112 2211 1000
Q ss_pred CCceEEecCCCCcCCCCcceeeccccC-CCceEEEE--ccC-CC-EEEEEcCCCCCcceeecccccCCCceeecceeeee
Q psy11412 83 DSGVTVIDDPELDKQPDPVIIKGRRFT-GSSQMFQL--SLD-GK-RIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEF 157 (290)
Q Consensus 83 ~~~~~v~~~~~~~~~~~~~~~~~~~~g-~gPr~vaf--sPd-G~-~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~ 157 (290)
.+. . .+ ..|.++++ +|+ |+ ++||+++ ++ .+..+++.+.
T Consensus 121 ----------------~pv---~--t~~~~pyGlcly~~~~~g~~yafV~~k---------------~G-~~~q~~l~~~ 163 (355)
T 3amr_A 121 ----------------HPI---A--TAINEVYGFTLYHSQKTGKYYAMVTGK---------------EG-EFEQYELKAD 163 (355)
T ss_dssp ----------------SCE---E--CCCSSCCCEEEEECTTTCCEEEEEECS---------------SS-EEEEEEEEEC
T ss_pred ----------------cCc---C--CCCCCeeEEEEEecCCCCcEEEEEECC---------------CC-eEEEEEEEeC
Confidence 000 0 01 47888999 885 44 6887766 22 3333333321
Q ss_pred ----eecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC--CceEeeEEeeCceecCCC
Q psy11412 158 ----IQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA--HPVLVGQIFLGGKIQSDS 231 (290)
Q Consensus 158 ----~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~--~~~~v~~i~~Gg~~~~~~ 231 (290)
...+.++++ +.++.+.+|++.+...+||++.+. ..|+.||..... ..+.+..+..++
T Consensus 164 ~~g~~~~~lVR~f----------~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~------ 226 (355)
T 3amr_A 164 KNGYISGKKVRAF----------KMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRH------ 226 (355)
T ss_dssp TTSCEEEEEEEEE----------ECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSS------
T ss_pred CCCcccceEEEEe----------cCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCc------
Confidence 112223321 223567899999999999999965 447777653211 244555443222
Q ss_pred ceEEecCCCCCCCCCcceeecccccCCcceEEE--ccCCC-EEEEEcC---CCCCCCcc
Q psy11412 232 GVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL--SLDGK-RIYVSSS---LFSPWDKE 284 (290)
Q Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~--sPDG~-~L~Van~---~~~~~~~~ 284 (290)
+...+.+|++ .++|+ +|+|+|+ .|..++++
T Consensus 227 -----------------------l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 227 -----------------------LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -----------------------BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -----------------------cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 1125899999 77888 8999986 55555553
No 243
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.53 E-value=4.4e-07 Score=94.80 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=87.2
Q ss_pred ceEEEEEc-CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 34 MVTDILIS-LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 34 ~p~~va~S-pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
.+.+++|| |||++|+++. .+.|.+|++... ....+ ..+ .+..+
T Consensus 297 ~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~-~~~~~----~~~-----------------------------~~~~~ 340 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGT-YVLKV----PEP-----------------------------LRIRY 340 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE--TTEEEEECTTSS-BEEEC----SCC-----------------------------SCEEE
T ss_pred ccceeeecCCCCCEEEEEE--cCEEEEEcCCCC-ceEEc----cCC-----------------------------CcceE
Confidence 46789999 9999998876 579999998542 11111 000 01157
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCC
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDR 192 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr 192 (290)
++++|+ ||++++.++.. ..+ +++.+..... ...+. .....+..++|||||+
T Consensus 341 ~~~~~s-dg~~l~~~s~~----------------~~l--~~~~d~~~~~-~~~l~---------~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTRE----------------GDF--LGIYDYRTGK-AEKFE---------ENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EEECSS-SEEEEEEEETT----------------EEE--EEEEETTTCC-EEECC---------CCCCSEEEEEECTTSS
T ss_pred EeeeEc-CCCeEEEEECC----------------Cce--EEEEECCCCC-ceEec---------CCccceeeeEECCCCC
Confidence 789999 99999887651 011 1111110000 11000 0123567899999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCCEEE
Q psy11412 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIY 272 (290)
Q Consensus 193 ~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~~L~ 272 (290)
+|++++ .++.|.+||+.. +..+.+ . .+.. +....++|||||++|+
T Consensus 392 ~la~~~-~~~~v~~~d~~t-g~~~~~--~-~~~~------------------------------~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 392 FAVVAN-DRFEIMTVDLET-GKPTVI--E-RSRE------------------------------AMITDFTISDNSRFIA 436 (1045)
T ss_dssp EEEEEE-TTSEEEEEETTT-CCEEEE--E-ECSS------------------------------SCCCCEEECTTSCEEE
T ss_pred EEEEEC-CCCeEEEEECCC-CceEEe--c-cCCC------------------------------CCccceEECCCCCeEE
Confidence 999887 567999999853 222211 1 1220 1357899999999998
Q ss_pred EEcC
Q psy11412 273 VSSS 276 (290)
Q Consensus 273 Van~ 276 (290)
.+..
T Consensus 437 ~~~~ 440 (1045)
T 1k32_A 437 YGFP 440 (1045)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7753
No 244
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.53 E-value=4.3e-07 Score=91.41 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceE
Q psy11412 35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQM 114 (290)
Q Consensus 35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~ 114 (290)
..+++++|||++||.+ +++|.+||+.... ...+ ..++... ........
T Consensus 19 ~~~~~w~~dg~~~~~~---~~~i~~~~~~~~~-~~~~---~~~~~~~-------------------------~~~~~~~~ 66 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ---ENNILVFNAEYGN-SSVF---LENSTFD-------------------------EFGHSIND 66 (740)
T ss_dssp CCCEEECSSSEEEEEE---TTEEEEEETTTCC-EEEE---ECTTTTT-------------------------TCCSCCCE
T ss_pred ccccEECCCCcEEEEc---CCcEEEEECCCCc-eEEE---Eechhhh-------------------------hhcccccc
Confidence 3478999999988875 6899999997632 2211 1111000 00012234
Q ss_pred EEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEE
Q psy11412 115 FQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYL 194 (290)
Q Consensus 115 vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~L 194 (290)
++|||||++|+........+... ..+.+.++++.. .+ ... +. ..+.....++|||||+.|
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~-------~~~~~~~~d~~~---~~-~~~-----l~----~~~~~~~~~~~SPdG~~l 126 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHS-------YTASYDIYDLNK---RQ-LIT-----EE----RIPNNTQWVTWSPVGHKL 126 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSC-------EEEEEEEEETTT---TE-ECC-----SS----CCCTTEEEEEECSSTTCE
T ss_pred eEECCCCCEEEEEECCeeeEEEc-------cceEEEEEECCC---Cc-EEE-----cc----cCCCcceeeEECCCCCEE
Confidence 89999999988865421111000 001111122211 11 110 00 012345678999999988
Q ss_pred EEEeCCCCcEEEEEecC
Q psy11412 195 YTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 195 yvs~r~~~~V~v~Dv~d 211 (290)
+... ++.|.+||+..
T Consensus 127 a~~~--~~~i~~~~~~~ 141 (740)
T 4a5s_A 127 AYVW--NNDIYVKIEPN 141 (740)
T ss_dssp EEEE--TTEEEEESSTT
T ss_pred EEEE--CCeEEEEECCC
Confidence 7654 46899998853
No 245
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.52 E-value=1.1e-06 Score=77.51 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=75.9
Q ss_pred CceEEEEEc----CCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412 33 AMVTDILIS----LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 108 (290)
Q Consensus 33 ~~p~~va~S----pDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 108 (290)
..|.+++++ |||++||+++..++.|.+|+....+.......+..- + . .
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--------------------~------~--~ 223 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--------------------P------G--T 223 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--------------------C------C--C
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--------------------C------C--C
Confidence 368899999 999999999988899999998521211111111000 0 0 0
Q ss_pred C-CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEE
Q psy11412 109 T-GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILI 187 (290)
Q Consensus 109 g-~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~ 187 (290)
. ..|.+++++++|+ +|+++...+ .+..++..+ .+.+..+ ..+ ...+.+++|
T Consensus 224 ~~~~p~~i~~d~~G~-l~v~~~~~~---------------~i~~~d~~~---g~~~~~~--------~~~-~~~~~~i~~ 275 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-LLVANWGSS---------------HIEVFGPDG---GQPKMRI--------RCP-FEKPSNLHF 275 (314)
T ss_dssp SSCEEEEEEEBTTCC-EEEEEETTT---------------EEEEECTTC---BSCSEEE--------ECS-SSCEEEEEE
T ss_pred CCCCCCceEECCCCC-EEEEEcCCC---------------EEEEEcCCC---CcEeEEE--------eCC-CCCceeEEE
Confidence 1 3589999999996 676653111 222222110 0011100 011 145788999
Q ss_pred ccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 188 SLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 188 SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|||++||+++..++.|..|++..
T Consensus 276 ~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 276 KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999999997788999998853
No 246
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.52 E-value=2.3e-06 Score=80.04 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=69.1
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEE
Q psy11412 38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL 117 (290)
Q Consensus 38 va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vaf 117 (290)
.++++++++|++++. +|.|++||+.. .+.+..+... ......++|
T Consensus 274 ~~~~~~~~~l~~~~~-d~~i~vwd~~~---~~~~~~~~~~-------------------------------~~~v~~~~~ 318 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSY-DNTLIVWDVAQ---MKCLYILSGH-------------------------------TDRIYSTIY 318 (464)
T ss_dssp EEEEEETTEEEEEET-TSCEEEEETTT---TEEEEEECCC-------------------------------SSCEEEEEE
T ss_pred EEEcCCCCEEEEEeC-CCeEEEEECCC---CcEEEEecCC-------------------------------CCCEEEEEE
Confidence 356899999998875 88999999965 3333322111 146788999
Q ss_pred ccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEE
Q psy11412 118 SLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTS 197 (290)
Q Consensus 118 sPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs 197 (290)
+|+|+++++.+. ++ .+.+++... .+.+..+. + .......++++ +++|+++
T Consensus 319 ~~~~~~l~sg~~---------------dg-~i~vwd~~~---~~~~~~~~-----~----h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 319 DHERKRCISASM---------------DT-TIRIWDLEN---GELMYTLQ-----G----HTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp ETTTTEEEEEET---------------TS-CEEEEETTT---TEEEEEEC-----C----CSSCEEEEEEC--SSEEEEE
T ss_pred cCCCCEEEEEeC---------------CC-cEEEEECCC---CcEEEEEe-----C----CCCcEEEEEEc--CCEEEEE
Confidence 999999998765 22 333333321 11121110 1 12345667776 6888888
Q ss_pred eCCCCcEEEEEecC
Q psy11412 198 NWMHGDIRQYDIRD 211 (290)
Q Consensus 198 ~r~~~~V~v~Dv~d 211 (290)
. .++.|.+||+.+
T Consensus 369 s-~dg~v~vwd~~~ 381 (464)
T 3v7d_B 369 A-ADGSIRGWDAND 381 (464)
T ss_dssp E-TTSEEEEEETTT
T ss_pred e-CCCcEEEEECCC
Confidence 8 689999999965
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.51 E-value=1.5e-06 Score=76.97 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCC
Q psy11412 33 AMVTDILISLDDRYLYTSNWM--HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTG 110 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~--~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 110 (290)
++..++.|+. .+||.++.. ..+|+++|+.+ .+++.++.++ .
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~t---gkv~~~~~l~--------------------------------~ 63 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLET---GRILQRAEVP--------------------------------P 63 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTT---CCEEEEEECC--------------------------------T
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCC---CCEEEEEeCC--------------------------------C
Confidence 3667899975 689999654 35899999865 4555555443 2
Q ss_pred CceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccC
Q psy11412 111 SSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLD 190 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpD 190 (290)
.+.+..+.++|++||+++-. .+.+.++|..+ .+.+.+++.. . .+..+++|
T Consensus 64 ~~fgeGi~~~~~~ly~ltw~---------------~~~v~v~D~~t---l~~~~ti~~~----------~--~Gwglt~d 113 (243)
T 3mbr_X 64 PYFGAGIVAWRDRLIQLTWR---------------NHEGFVYDLAT---LTPRARFRYP----------G--EGWALTSD 113 (243)
T ss_dssp TCCEEEEEEETTEEEEEESS---------------SSEEEEEETTT---TEEEEEEECS----------S--CCCEEEEC
T ss_pred CcceeEEEEeCCEEEEEEee---------------CCEEEEEECCc---CcEEEEEeCC----------C--CceEEeeC
Confidence 34444455668999998642 12232333322 2233332221 1 12456789
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
|+.||+|+ ++++|+++|. .+.+.+++|.++.
T Consensus 114 g~~L~vSd-gs~~l~~iDp---~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 114 DSHLYMSD-GTAVIRKLDP---DTLQQVGSIKVTA 144 (243)
T ss_dssp SSCEEEEC-SSSEEEEECT---TTCCEEEEEECEE
T ss_pred CCEEEEEC-CCCeEEEEeC---CCCeEEEEEEEcc
Confidence 99999999 7999999864 4577888888763
No 248
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.51 E-value=2e-06 Score=86.48 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=35.0
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
.+.|+..++..... ..++....+++||||++|+.+. ++.|.+|++..
T Consensus 95 ~~~d~~~~~~~~l~---~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~ 141 (740)
T 4a5s_A 95 DIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPN 141 (740)
T ss_dssp EEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred EEEECCCCcEEEcc---cCCCcceeeEECCCCCEEEEEE--CCeEEEEECCC
Confidence 47888877755432 2345678999999999987663 57999999865
No 249
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=98.48 E-value=2.2e-06 Score=79.81 Aligned_cols=118 Identities=9% Similarity=0.040 Sum_probs=77.5
Q ss_pred CCceEEEEEcCCCCEEEEE--eCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 32 PAMVTDILISLDDRYLYTS--NWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 32 ~~~p~~va~SpDGr~Lyva--~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
.+.+..++++|++..++++ +..+++|++||+.. .+.+..+..+
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~-------------------------------- 320 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAH-------------------------------- 320 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECS--------------------------------
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccc--------------------------------
Confidence 4467889999987766544 33478999999865 3343333222
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..+..+.|+|+++.++++... ..+.+.+++..+ .+.+.. +.+ ....+..|+|||
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~--------------~d~~I~iwd~~~---~~~v~~-----l~g----H~~~V~~l~~sp 374 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGF--------------AQNQLVIWKYPT---MAKVAE-----LKG----HTSRVLSLTMSP 374 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECT--------------TTCCEEEEETTT---CCEEEE-----ECC----CSSCEEEEEECT
T ss_pred cceeeeeecCCCCeEEEEEec--------------CCCEEEEEECCC---CcEEEE-----EcC----CCCCEEEEEEcC
Confidence 467789999999999987541 112333343322 112221 111 124578899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
||++|+++. .|++|.+||+.+
T Consensus 375 dg~~l~S~s-~D~tvriWdv~~ 395 (420)
T 4gga_A 375 DGATVASAA-ADETLRLWRCFE 395 (420)
T ss_dssp TSSCEEEEE-TTTEEEEECCSC
T ss_pred CCCEEEEEe-cCCeEEEEECCC
Confidence 999999888 789999999965
No 250
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.48 E-value=4.8e-06 Score=83.23 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCC----eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHG----DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g----~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
...++++||||++|+.+...+| +|++||+... +.+... ..+
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~-~~~------------------------------- 170 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDV-LER------------------------------- 170 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEE-EEE-------------------------------
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCccc-ccC-------------------------------
Confidence 3568999999999976643233 8999999652 222111 110
Q ss_pred CCceEEEEccCCCEEEEEcC
Q psy11412 110 GSSQMFQLSLDGKRIYVSSS 129 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~ne 129 (290)
.....++|||||++||.+..
T Consensus 171 ~~~~~~~wspDg~~l~~~~~ 190 (710)
T 2xdw_A 171 VKFSCMAWTHDGKGMFYNAY 190 (710)
T ss_dssp ECSCCEEECTTSSEEEEEEC
T ss_pred cccceEEEEeCCCEEEEEEE
Confidence 12345899999999998764
No 251
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.47 E-value=1.3e-06 Score=79.29 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=30.6
Q ss_pred EEEEEecCCCccCCCCCCCCCCCceEEEEEcC-CCCEEEEEeCCC-----CeEEEEEcC
Q psy11412 11 ADKVIDIPAKQVQGYPGGDKVPAMVTDILISL-DDRYLYTSNWMH-----GDIRQYDIR 63 (290)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~~p~~va~Sp-DGr~Lyva~~~~-----g~V~v~dv~ 63 (290)
.-.++|+..++..... .-.....++++|| ||++|+....+. ..|.+|++.
T Consensus 169 ~l~~~d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 169 RLIKVDIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp EEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred eEEEEECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 4456777665543322 2234577899999 888666554332 368888874
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=1.8e-06 Score=77.70 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR 63 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~ 63 (290)
.|.+++++++|+.+|+... ++.|..|+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~-~~~i~~~~~~ 48 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQ-DGRVIKYEGP 48 (322)
T ss_dssp CCCCEECCTTCSSEEEECT-TSEEEEECCT
T ss_pred CceEEEEcCCCCEEEEEcC-CCeEEEECCC
Confidence 6899999999998988764 6889888764
No 253
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.43 E-value=9.8e-06 Score=73.38 Aligned_cols=31 Identities=3% Similarity=0.043 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
.+.+.+++||++.||+++..++.|..||...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~ 80 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLAS 80 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCC
Confidence 5788999999999999988889999999754
No 254
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.41 E-value=9.8e-06 Score=79.32 Aligned_cols=207 Identities=11% Similarity=0.092 Sum_probs=120.7
Q ss_pred EEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCC--------------eEEEEEcCCCCCceeeeEEeecc
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHG--------------DIRQYDIRDTAHPVLVGQIFLGG 78 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g--------------~V~v~dv~d~~~~~~~~~i~~g~ 78 (290)
..||....+|.-.. .|++....+..+++|++.+.++|.+. -+.++++..... . +.- |
T Consensus 220 ~~iD~~tm~v~~Qv---~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~--~---vk~-G 290 (638)
T 3sbq_A 220 NAIDAETMEMAFQV---IVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEA--A---VKA-G 290 (638)
T ss_dssp EEEETTTCSEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHH--H---HHT-T
T ss_pred EEEcCCccEEEEEE---EcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHH--H---Hhc-C
Confidence 34666666664443 56777778889999999999998642 255555421000 0 000 1
Q ss_pred cccCCC--ceEEecCCCCcC-CCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccC--CCceeecce
Q psy11412 79 KIQSDS--GVTVIDDPELDK-QPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVK--TDAAFGSDE 153 (290)
Q Consensus 79 ~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~--~g~~~~~~~ 153 (290)
....-+ .+-|++-..... .+.-. .-.+....|+++-++|||+++|+++.|+.+++++.+..... +++. ++
T Consensus 291 ~~~~~~g~gv~ViD~~~~~~~~~~~~--~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~---~~ 365 (638)
T 3sbq_A 291 DFITLGDSKTPVLDGRKKDGKDSKFT--RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL---AD 365 (638)
T ss_dssp CCBCCTTCCCCEEECSCBTTBCCSSE--EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC---SC
T ss_pred CeEEECCCCeeEEccccccccCCceE--EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc---cC
Confidence 111111 344554321100 00001 11123468999999999999999999887777654321000 0100 00
Q ss_pred eeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCC------CC-ceEeeEEeeCce
Q psy11412 154 IMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT------AH-PVLVGQIFLGGK 226 (290)
Q Consensus 154 ~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~------~~-~~~v~~i~~Gg~ 226 (290)
. +..+. . ....+-+|.+.+|+++| .+|+|.+.+++|..|++... .. ...++.+++.=
T Consensus 366 ~-----~~~~~--------a-e~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y- 429 (638)
T 3sbq_A 366 P-----RDVIV--------G-EPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY- 429 (638)
T ss_dssp G-----GGGEE--------E-CCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS-
T ss_pred c-----ccceE--------e-eccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc-
Confidence 0 00010 0 01123478999999999 99999999999999999531 01 23566666643
Q ss_pred ecCCCceEEecCCCCCCCCCcceeecccccCCcceEEE------ccCCCEEEEEcCCCCC
Q psy11412 227 IQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL------SLDGKRIYVSSSLFSP 280 (290)
Q Consensus 227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~------sPDG~~L~Van~~~~~ 280 (290)
+|-+..- .||||+|.+.|.+.+-
T Consensus 430 -------------------------------qpGH~~~~~get~~~dGk~lv~lnK~skd 458 (638)
T 3sbq_A 430 -------------------------------QPGHLHASLCETNEADGKWLVALSKFSKD 458 (638)
T ss_dssp -------------------------------CEEEEEETTTTSTTCCSCEEEEEESCCTT
T ss_pred -------------------------------CCcccccCCCccCCCCccEEEEecccccc
Confidence 3444544 7999999999986554
No 255
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=98.40 E-value=7.2e-06 Score=76.31 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=79.5
Q ss_pred ceEEEEEcCC----CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccC
Q psy11412 34 MVTDILISLD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT 109 (290)
Q Consensus 34 ~p~~va~SpD----Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 109 (290)
....+++||| +++++.++ ..+.+|++.+ .+++.....|+ .
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g---~~~~v~~l~~---g~lv~ss~~g~------------------------------d 156 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSG---NIKAVLGLTK---RRLVSSSGTLS------------------------------D 156 (356)
T ss_dssp EEEEECC------CCEEEEEEE---EEEEEEEETT---TEEEEEESSST------------------------------T
T ss_pred ceEEEEECCCccccccEEEeCC---CeEEEEecCC---CcEEEecccCC------------------------------C
Confidence 5678999999 99998754 4688999853 34443211111 1
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
...+-++|+|||+.+..... .+...+.++|||
T Consensus 157 ~~V~~~~~s~dG~~~~s~~~------------------------------------------------~~~~v~~l~fs~ 188 (356)
T 2w18_A 157 QQVEVMTFAEDGGGKENQFL------------------------------------------------MPPEETILTFAE 188 (356)
T ss_dssp CEEEEEEECTTSCEEEEEEE------------------------------------------------CCCSSCEEEEEE
T ss_pred CcEEEEEECCCCceeeeecc------------------------------------------------CCCceeeEEeec
Confidence 46788999999997764211 001123478888
Q ss_pred ---CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEcc
Q psy11412 190 ---DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL 266 (290)
Q Consensus 190 ---DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sP 266 (290)
||..|..+. .+++|.+||+.. .+.+.++..+... ......++|||
T Consensus 189 ~~g~~~~LaSgS-~D~TIkIWDl~T---Gk~l~tL~g~~~~----------------------------v~~v~~vafSp 236 (356)
T 2w18_A 189 VQGMQEALLGTT-IMNNIVIWNLKT---GQLLKKMHIDDSY----------------------------QASVCHKAYSE 236 (356)
T ss_dssp EETSTTEEEEEE-TTSEEEEEETTT---CCEEEEEECCC-------------------------------CCCEEEEEEE
T ss_pred cCCCCceEEEec-CCCcEEEEECCC---CcEEEEEcCCCcc----------------------------eeeeEEEEECC
Confidence 778888777 799999999953 4455555432210 01356679999
Q ss_pred CCCEEEEEc
Q psy11412 267 DGKRIYVSS 275 (290)
Q Consensus 267 DG~~L~Van 275 (290)
||+++++.+
T Consensus 237 dG~~lvs~s 245 (356)
T 2w18_A 237 MGLLFIVLS 245 (356)
T ss_dssp TTEEEEEEC
T ss_pred CCCEEEEec
Confidence 999998765
No 256
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.38 E-value=4.1e-05 Score=71.32 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.8
Q ss_pred CcceEEEccCCCEEEEEcC
Q psy11412 258 SSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 258 ~P~~~a~sPDG~~L~Van~ 276 (290)
.|++++|||||++|||++.
T Consensus 222 ~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 222 FANGINISPDGKYVYIAEL 240 (355)
T ss_dssp SEEEEEECTTSSEEEEEEG
T ss_pred ccCcceECCCCCEEEEEeC
Confidence 6999999999999999976
No 257
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.37 E-value=3.4e-06 Score=78.19 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=69.1
Q ss_pred EEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEE
Q psy11412 37 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQ 116 (290)
Q Consensus 37 ~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~va 116 (290)
...+++++++|+++. .+++|++||+... ........+. + . ++ ......++
T Consensus 94 ~~~~~~~~~~las~~-~d~~v~lw~~~~~---~~~~~~~~~~-~----------------~-------gH--~~~v~~v~ 143 (393)
T 4gq1_A 94 VNSSPVYSLFLACVC-QDNTVRLIITKNE---TIITQHVLGG-K----------------S-------GH--HNFVNDID 143 (393)
T ss_dssp ---CCEEEEEEEEEE-TTSCEEEEEEETT---EEEEEEEECT-T----------------T-------SC--SSCEEEEE
T ss_pred eeecCCCCCEEEEEe-CCCcEEEEECCCC---ccceeeeecc-c----------------C-------CC--CCceEEEE
Confidence 345677777887666 4899999998652 1111111110 0 0 01 14678899
Q ss_pred Ecc--------CCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEc
Q psy11412 117 LSL--------DGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILIS 188 (290)
Q Consensus 117 fsP--------dG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~S 188 (290)
|+| ||++|+.++. ++.+.+||+.. .+.+... ......+..++|+
T Consensus 144 ~~p~~~~~~~~d~~~las~s~----------------D~tv~~Wd~~~---~~~~~~~---------~~~~~~v~~v~~~ 195 (393)
T 4gq1_A 144 IADVYSADNRLAEQVIASVGD----------------DCTLIIWRLTD---EGPILAG---------YPLSSPGISVQFR 195 (393)
T ss_dssp EEEEECTTCSEEEEEEEEEET----------------TSEEEEEEEET---TEEEEEE---------EECSSCEEEEEEE
T ss_pred EccccccccCCCCCEEEEEEC----------------CCeEEEEECCC---Cceeeee---------cCCCCCcEEEEEC
Confidence 998 8998887664 23555566533 1111110 1122456789999
Q ss_pred cCCC-EEEEEeCCCCcEEEEEecC
Q psy11412 189 LDDR-YLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 189 pDGr-~Lyvs~r~~~~V~v~Dv~d 211 (290)
|++. +|+++. .+++|.+||+..
T Consensus 196 p~~~~~l~~~~-~d~~v~~wd~~t 218 (393)
T 4gq1_A 196 PSNPNQLIVGE-RNGNIRIFDWTL 218 (393)
T ss_dssp TTEEEEEEEEE-TTSEEEEEETTC
T ss_pred CCCCceEEecC-CCCEEEEEECCC
Confidence 9986 455555 789999999964
No 258
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.34 E-value=9.2e-06 Score=79.51 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=63.0
Q ss_pred EEEEecCCC-----ccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCce
Q psy11412 12 DKVIDIPAK-----QVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 86 (290)
Q Consensus 12 ~~~~~~~~~-----~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~ 86 (290)
.+|||.... ....+ ++++.+||++.++|||+++++++-.+.+|.|+|++.- ..... ++.+.
T Consensus 300 v~ViD~~~~~~~~~~~~~~---iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~--~~~~~----~k~~~----- 365 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRY---VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKL--PDLFA----GKLAD----- 365 (638)
T ss_dssp CCEEECSCBTTBCCSSEEE---EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH--HHHHT----TCCSC-----
T ss_pred eeEEccccccccCCceEEE---EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehh--hhhhh----ccccC-----
Confidence 468888762 23333 3789999999999999999999999999999999631 00000 00000
Q ss_pred EEecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCC
Q psy11412 87 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP 133 (290)
Q Consensus 87 ~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~ 133 (290)
+..........|-||.|.+|+++| .+|++--+.++
T Consensus 366 -----------~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 366 -----------PRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp -----------GGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred -----------cccceEeeccCCCcccEEEECCCC-ceEeeeeecce
Confidence 000000111236799999999999 89987655444
No 259
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=98.33 E-value=1.5e-05 Score=76.42 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=43.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.+++|.|||+ |||+....+.|.+++..+ +....+..+ .... .......++.
T Consensus 28 ~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~-g~~~~~~~~--~~~~-----------------------~~~~g~~Gll 80 (454)
T 1cru_A 28 KPHALLWGPDNQ-IWLTERATGKILRVNPES-GSVKTVFQV--PEIV-----------------------NDADGQNGLL 80 (454)
T ss_dssp SEEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEEC--TTCC-----------------------CCTTSSCSEE
T ss_pred CceEEEEcCCCc-EEEEEcCCCEEEEEECCC-CcEeEEecC--Cccc-----------------------cccCCCCcee
Confidence 799999999998 667776556788776433 222222111 0000 0000126788
Q ss_pred EEEEccC---CCEEEEEcC
Q psy11412 114 MFQLSLD---GKRIYVSSS 129 (290)
Q Consensus 114 ~vafsPd---G~~lYv~ne 129 (290)
+|+|+|| +++||++..
T Consensus 81 gia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 81 GFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEEECTTTTTSCEEEEEEE
T ss_pred EEEECCCcCcCCEEEEEEe
Confidence 9999998 899999864
No 260
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.31 E-value=6.1e-06 Score=73.86 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=14.9
Q ss_pred CceEEEEccCCCEEEEEcC
Q psy11412 111 SSQMFQLSLDGKRIYVSSS 129 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~ne 129 (290)
....++|||||++|+.+..
T Consensus 60 ~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp SCEEEEECTTSSEEEEEEE
T ss_pred cCCCeEECCCCCEEEEEEe
Confidence 3466899999998887654
No 261
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.29 E-value=1.1e-05 Score=72.27 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCC--C--eEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeecccc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMH--G--DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF 108 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~--g--~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 108 (290)
..+..+++||||++|+.+.... + .|.+|++.. +....+. ..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~---~~------------------------------- 103 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKIL---EA------------------------------- 103 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEE---EE-------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEEE---cC-------------------------------
Confidence 3567899999999988765422 3 377777653 2222211 11
Q ss_pred CCCceEEEEccCCCEEEEEc
Q psy11412 109 TGSSQMFQLSLDGKRIYVSS 128 (290)
Q Consensus 109 g~gPr~vafsPdG~~lYv~n 128 (290)
.. ...++|||||++|+++.
T Consensus 104 ~~-~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 104 KN-IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp SE-EEEEEECTTSSEEEEEE
T ss_pred CC-ccceeECCCCCEEEEEE
Confidence 12 67799999999988875
No 262
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.22 E-value=7.2e-06 Score=75.75 Aligned_cols=75 Identities=8% Similarity=0.087 Sum_probs=46.0
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|++|+|+|||+ |||+... + .+.+++ +- ....+..++. . ......+.+|+|+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~-g---------------~I~~i~--~g-~~~~~~~~~v--~----~~g~~~p~gia~~p 84 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERP-G---------------RIRLFR--EG-RLSTYAELSV--Y----HRGESGLLGLALHP 84 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETT-T---------------EEEEEE--TT-EEEEEEECCC--C----CSTTCSEEEEEECT
T ss_pred CCceEEEEcCCCe-EEEEeCC-C---------------eEEEEE--CC-CccEeecceE--e----ecCCCCceeEEECC
Confidence 5899999999998 8877541 1 222222 10 0011111110 0 01124688999999
Q ss_pred C---CCEEEEEeCCC-----CcEEEEEec
Q psy11412 190 D---DRYLYTSNWMH-----GDIRQYDIR 210 (290)
Q Consensus 190 D---Gr~Lyvs~r~~-----~~V~v~Dv~ 210 (290)
| +++||+++... +.|..|+..
T Consensus 85 df~~~g~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 85 RFPQEPYVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp TTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred CCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence 9 89999998643 678888875
No 263
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.22 E-value=4.8e-05 Score=70.81 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=43.0
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcc
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 260 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~ 260 (290)
....+++ ++++|+++. .++.|.+||+.+ .+.+..+..... ....+.+.
T Consensus 364 ~v~~~~~--~~~~l~s~~-~dg~v~iwd~~~---~~~~~~~~~~~~--------------------------~~~~~~v~ 411 (445)
T 2ovr_B 364 AVTCLQF--NKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLES--------------------------GGSGGVVW 411 (445)
T ss_dssp CEEEEEE--CSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECTT--------------------------GGGTCEEE
T ss_pred CEEEEEE--CCCEEEEEe-CCCeEEEEECCC---Cceeeeeecccc--------------------------CCCCceEE
Confidence 4555666 578988888 789999999864 344444421110 00012578
Q ss_pred eEEEccCCCEEEEEcC
Q psy11412 261 MFQLSLDGKRIYVSSS 276 (290)
Q Consensus 261 ~~a~sPDG~~L~Van~ 276 (290)
.++|+|+|..|++++.
T Consensus 412 ~~~~s~~~~~la~~~~ 427 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSR 427 (445)
T ss_dssp EEEECSSEEEEEEECS
T ss_pred EEEecCCEEEEEEccc
Confidence 9999999999999876
No 264
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.18 E-value=1.9e-06 Score=78.08 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=29.7
Q ss_pred EEEecCCCccCCCCCCCCCCCceE-EEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 13 KVIDIPAKQVQGYPGGDKVPAMVT-DILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~v~~~p~-~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
.++++..++..... .-..... .+.+||||++|+.+.. .+.|.+||+..
T Consensus 63 ~~~d~~~~~~~~l~---~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~ 111 (396)
T 3c5m_A 63 YLLNLETQQAVQLT---EGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLET 111 (396)
T ss_dssp EEEETTTTEEEECC---CSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTT
T ss_pred EEEECCCCcEEEee---cCCCCccccceECCCCCEEEEEEc-CCcEEEEECCC
Confidence 55666655543322 1111222 2678999999977664 46899999865
No 265
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=98.11 E-value=5.1e-05 Score=70.42 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.|.+|+|.|||+ |||+....|+|.+++-.+ +....+..+. .+ + .....++.
T Consensus 33 ~P~~ia~~pdG~-llVter~~G~I~~v~~~~-g~~~~v~~~~---------~v---------------~---~~g~~Gll 83 (347)
T 3das_A 33 SPWGLAPLPGGD-LLVSSRDEATITRVDAKT-GRKTELGEVP---------GV---------------S---PSGEGGLL 83 (347)
T ss_dssp SEEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEECT---------TC---------------C---CBTTBSEE
T ss_pred CceEEEEcCCCc-EEEEEecCCEEEEEECCC-CcEeeecccC---------ce---------------e---ecCCCCce
Confidence 799999999998 667776678998886433 2222221110 00 0 00126899
Q ss_pred EEEEccC---CCEEEEE
Q psy11412 114 MFQLSLD---GKRIYVS 127 (290)
Q Consensus 114 ~vafsPd---G~~lYv~ 127 (290)
+|+|+|| .++||+.
T Consensus 84 Gia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 84 GIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEECTTHHHHCEEEEE
T ss_pred eeEeccccccCCEEEEE
Confidence 9999997 7889986
No 266
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.00 E-value=2e-05 Score=72.82 Aligned_cols=79 Identities=8% Similarity=0.013 Sum_probs=44.2
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..|++|+|.|||++|||+.. .+ .+.+++. +-.....+..++... ......+.+|+|+|
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~-~G---------------~i~~~~~-~g~~~~~~~~~~~v~-----~~g~~g~~gia~~p 75 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLR-GG---------------ELRHWQA-GKGLSAPLSGVPDVW-----AHGQGGLLDVVLAP 75 (353)
T ss_dssp SSEEEEEECSTTCCEEEEET-TT---------------EEEEEET-TTEECCCCBSCCCCC-----CSTTCSEEEEEECT
T ss_pred CCcEEEEEcCCCCEEEEEeC-Cc---------------eEEEEeC-CCceeeEecCCcccc-----cCCCCCceeEEECC
Confidence 58999999999997887754 11 2221211 000000111111100 01123578899999
Q ss_pred C---CCEEEEEeCC-------CCcEEEEEec
Q psy11412 190 D---DRYLYTSNWM-------HGDIRQYDIR 210 (290)
Q Consensus 190 D---Gr~Lyvs~r~-------~~~V~v~Dv~ 210 (290)
| +++||++... .+.|..|+++
T Consensus 76 df~~~g~lYv~~~~~~~~g~~~~~v~r~~~~ 106 (353)
T 2g8s_A 76 DFAQSRRIWLSYSEVGDDGKAGTAVGYGRLS 106 (353)
T ss_dssp THHHHCEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred CCCCCCEEEEEEeCCCCCCCceeEEEEEEEC
Confidence 8 8899998643 3467777774
No 267
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.00 E-value=0.00023 Score=65.81 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=23.5
Q ss_pred CceeEEEE-------ccCCCEEEEEeCCCCcEEEEEec
Q psy11412 180 SMVTDILI-------SLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 180 ~~~~~i~~-------SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
..|.+++| ..+| .||+++...+.|..+++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp CCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEEC
T ss_pred cCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEEC
Confidence 46788999 4677 668888788899998885
No 268
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.95 E-value=0.00019 Score=72.18 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=23.4
Q ss_pred ceeEEEEccCCCEEEEEe-CC---CCcEEEEEecC
Q psy11412 181 MVTDILISLDDRYLYTSN-WM---HGDIRQYDIRD 211 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~-r~---~~~V~v~Dv~d 211 (290)
...++.+||||++|+.+. +. .+.|.+||+..
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 356789999999887654 32 45899999864
No 269
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.93 E-value=0.00032 Score=62.20 Aligned_cols=181 Identities=12% Similarity=0.085 Sum_probs=98.3
Q ss_pred eEEEEEecCCCccCCCCCCCCCC--CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceE
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVP--AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVT 87 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~--~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~ 87 (290)
..-.++|.+++++.-.. +.. ..+++++++|||+.|+ + . ++.|..||. + .+.+-++..+.
T Consensus 15 ~~v~~~d~~tG~~~w~~---~~~~~~~~~~~~~~pdG~ilv-s-~-~~~V~~~d~-~---G~~~W~~~~~~--------- 75 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEY---PLEKGWECNSVAATKAGEILF-S-Y-SKGAKMITR-D---GRELWNIAAPA--------- 75 (276)
T ss_dssp SEEEEEETTTTEEEEEE---ECCTTCCCCEEEECTTSCEEE-E-C-BSEEEEECT-T---SCEEEEEECCT---------
T ss_pred CEEEEEECCCCeEEEEe---CCCccCCCcCeEECCCCCEEE-e-C-CCCEEEECC-C---CCEEEEEcCCC---------
Confidence 34457787777766544 333 2689999999999887 3 2 568988886 3 34443332220
Q ss_pred EecCCCCcCCCCcceeeccccCCCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccC
Q psy11412 88 VIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMP 167 (290)
Q Consensus 88 v~~~~~~~~~~~~~~~~~~~~g~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p 167 (290)
+.....+.+.|||+++++.+.... .+..+. .+|..+-.+...
T Consensus 76 ---------------------~~~~~~~~~~~dG~~lv~~~~~~~--~v~~vd---~~Gk~l~~~~~~------------ 117 (276)
T 3no2_A 76 ---------------------GCEMQTARILPDGNALVAWCGHPS--TILEVN---MKGEVLSKTEFE------------ 117 (276)
T ss_dssp ---------------------TCEEEEEEECTTSCEEEEEESTTE--EEEEEC---TTSCEEEEEEEC------------
T ss_pred ---------------------CccccccEECCCCCEEEEecCCCC--EEEEEe---CCCCEEEEEecc------------
Confidence 123456789999999887543111 111111 123222111110
Q ss_pred ccccCccccCCCCceeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCce-----ecCCCceEEecCCCCC
Q psy11412 168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK-----IQSDSGVTVIDDPELD 242 (290)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~-----~~~~~~v~~~~~~~~~ 242 (290)
. ...+ ....+..+++++||++|++.. .++.|..||.. .+.+-++..++. ...++.+.+.+..
T Consensus 118 ~-~~~~----~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~----G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~--- 184 (276)
T 3no2_A 118 T-GIER----PHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN----GQLLNSVKLSGTPFSSAFLDNGDCLVACGD--- 184 (276)
T ss_dssp C-SCSS----GGGSCSCCEECTTSCEEEEET-TTTEEEEECTT----SCEEEEEECSSCCCEEEECTTSCEEEECBT---
T ss_pred C-CCCc----ccccccCceECCCCCEEEEec-CCCEEEEECCC----CCEEEEEECCCCccceeEcCCCCEEEEeCC---
Confidence 0 0000 001344578899999876554 78899999763 334444433321 1233333333321
Q ss_pred CCCCcceeecccccCCcceEEEccC-CCEEEEEc
Q psy11412 243 KQPDPVIIKGRRFTGSSQMFQLSLD-GKRIYVSS 275 (290)
Q Consensus 243 ~~~~~~~~~~~~~~~~P~~~a~sPD-G~~L~Van 275 (290)
.-+-++|+|+ |+.++-..
T Consensus 185 ---------------~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 185 ---------------AHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ---------------TSEEEEECTTTCCEEEEEE
T ss_pred ---------------CCeEEEEeCcCCcEEEEec
Confidence 2256788888 88887764
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.84 E-value=0.0002 Score=63.66 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=70.2
Q ss_pred CCceEEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 110 ~gPr~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
..+.+++++|++++||+++.- ...+..++.. ...++.++. .+...+.+|++.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~---------------~~~I~~ld~~----g~v~~~i~l--------~g~~D~EGIa~~~ 79 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK---------------PAAIVEMTTN----GDLIRTIPL--------DFVKDLETIEYIG 79 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET---------------TEEEEEEETT----CCEEEEEEC--------SSCSSEEEEEECS
T ss_pred cCcceeEEeCCCCEEEEEECC---------------CCeEEEEeCC----CCEEEEEec--------CCCCChHHeEEeC
Confidence 468889999999999986541 1222222221 122222221 1124577899999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEccCCC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGK 269 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~sPDG~ 269 (290)
+|+ +|++++.++.+.++++.+......+..+..+.. ..| ...+..+++++|+++
T Consensus 80 ~g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~----------------~~~---------~N~g~EGLA~d~~~~ 133 (255)
T 3qqz_A 80 DNQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPLQ----------------ESP---------TNCGFEGLAYSRQDH 133 (255)
T ss_dssp TTE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCCS----------------SCC---------CSSCCEEEEEETTTT
T ss_pred CCE-EEEEECCCCcEEEEEcCCCCeeeeeeeeccccc----------------ccc---------ccCCcceEEEeCCCC
Confidence 997 467777889999999965433233444432110 000 012579999999999
Q ss_pred EEEEEcC
Q psy11412 270 RIYVSSS 276 (290)
Q Consensus 270 ~L~Van~ 276 (290)
+||++++
T Consensus 134 ~L~va~E 140 (255)
T 3qqz_A 134 TFWFFKE 140 (255)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999987
No 271
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.83 E-value=0.0003 Score=70.05 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCC----CeEEEEEcCC
Q psy11412 34 MVTDILISLDDRYLYTSNWMH----GDIRQYDIRD 64 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~----g~V~v~dv~d 64 (290)
...++++||||++|+.+...+ .+|++||+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 366899999999987653322 4799999965
No 272
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.80 E-value=0.00081 Score=67.12 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=22.7
Q ss_pred eeEEEEccCCCEEEEEeC-C--CCcEEEEEecCC
Q psy11412 182 VTDILISLDDRYLYTSNW-M--HGDIRQYDIRDT 212 (290)
Q Consensus 182 ~~~i~~SpDGr~Lyvs~r-~--~~~V~v~Dv~d~ 212 (290)
..++.+||||++|+++.. + .+.|.++|+.++
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 456889999999976542 2 258999998654
No 273
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.80 E-value=0.00085 Score=62.26 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=21.3
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
....+.+ +|++|+++. .++.|.+||+..
T Consensus 298 ~v~~~~~--~~~~l~~g~-~dg~i~iwd~~~ 325 (435)
T 1p22_A 298 GIACLQY--RDRLVVSGS-SDNTIRLWDIEC 325 (435)
T ss_dssp CEEEEEE--ETTEEEEEE-TTSCEEEEETTT
T ss_pred cEEEEEe--CCCEEEEEe-CCCeEEEEECCC
Confidence 3445555 688988888 789999999954
No 274
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=97.78 E-value=0.003 Score=59.17 Aligned_cols=178 Identities=8% Similarity=0.076 Sum_probs=93.0
Q ss_pred ceEEEEEc---CC----CCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCC-ceEEecCCCCcCCCCcceeec
Q psy11412 34 MVTDILIS---LD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS-GVTVIDDPELDKQPDPVIIKG 105 (290)
Q Consensus 34 ~p~~va~S---pD----Gr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 105 (290)
+...++++ |+ +.++|+++.+.+.|-|||+.+...-+++ +....+.. ....++-..
T Consensus 153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~-----~~~~~pd~~~~~~i~G~~------------ 215 (381)
T 3q6k_A 153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT-----HPTFKAERPTKFDYGGKE------------ 215 (381)
T ss_dssp GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE-----CGGGSCCSCEEEEETTEE------------
T ss_pred ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc-----cCCCccccCcceEECCEE------------
Confidence 56788888 33 7899999999999999999764322222 11111110 000000000
Q ss_pred cccCCCceEEEEccC----CCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCcc-ccCCCC
Q psy11412 106 RRFTGSSQMFQLSLD----GKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSW-KYPARS 180 (290)
Q Consensus 106 ~~~g~gPr~vafsPd----G~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~-~~~~~~ 180 (290)
.....|.-+|++||+ +++||...-.+ ..+-.+.+..+... .+ ...+..+ ..+...
T Consensus 216 ~~~~~Gi~gIaLsp~~~~~~~~LYf~plss---------------~~ly~V~T~~L~~~-~~----~~~v~~~G~kg~~s 275 (381)
T 3q6k_A 216 YEFKAGIFGITLGDRDSEGNRPAYYLAGSA---------------IKVYSVNTKELKQK-GG----KLNPELLGNRGKYN 275 (381)
T ss_dssp EEECCCEEEEEECCCCTTSCCEEEEEESSC---------------SEEEEEEHHHHSST-TC----CCCCEEEEECCTTC
T ss_pred eEeccCceEEEecCCcCCCCeEEEEEECCC---------------CcEEEEEHHHhhCc-ch----hhceEEeeecCCCC
Confidence 001258899999999 99999864311 11111111000000 00 0001000 010013
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCc
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 259 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P 259 (290)
...++++++....||.+.-.++.|..|+... +-.+..+..+.. |. + . .+|
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-------------d~-~-------l--------~~p 326 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-------------SS-R-------F--------VFG 326 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-------------CT-T-------C--------CSE
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-------------CC-C-------c--------ccc
Confidence 4456778643447899988899999998753 211111121111 11 0 0 279
Q ss_pred ceEEEccCCCEEEEEcCC
Q psy11412 260 QMFQLSLDGKRIYVSSSL 277 (290)
Q Consensus 260 ~~~a~sPDG~~L~Van~~ 277 (290)
..|.+.+||..-+.+|++
T Consensus 327 d~~~i~~~g~Lwv~sn~l 344 (381)
T 3q6k_A 327 TDISVDSKGGLWFMSNGF 344 (381)
T ss_dssp EEEEECTTSCEEEEECSC
T ss_pred CeEEECCCCeEEEEECcc
Confidence 999999999866667773
No 275
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.78 E-value=0.0012 Score=61.32 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCceEEEEc
Q psy11412 39 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 118 (290)
Q Consensus 39 a~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr~vafs 118 (290)
++++||++|+++.. +|+|++||+.+. +.+..+. ++ ......++|
T Consensus 138 ~~~~d~~~l~~g~~-dg~i~iwd~~~~---~~~~~~~-~h------------------------------~~~v~~l~~- 181 (435)
T 1p22_A 138 CLQYDDQKIVSGLR-DNTIKIWDKNTL---ECKRILT-GH------------------------------TGSVLCLQY- 181 (435)
T ss_dssp EEECCSSEEEEEES-SSCEEEEESSSC---CEEEEEC-CC------------------------------SSCEEEEEC-
T ss_pred EEEECCCEEEEEeC-CCeEEEEeCCCC---eEEEEEc-CC------------------------------CCcEEEEEE-
Confidence 45669999988875 899999998652 2322221 11 134555555
Q ss_pred cCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCEEEEEe
Q psy11412 119 LDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSN 198 (290)
Q Consensus 119 PdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~Lyvs~ 198 (290)
++++|++++. ++ .+.+++... .+.+..+. + .......++++ +..|+++.
T Consensus 182 -~~~~l~sg~~---------------dg-~i~vwd~~~---~~~~~~~~-----~----h~~~v~~l~~~--~~~l~s~s 230 (435)
T 1p22_A 182 -DERVIITGSS---------------DS-TVRVWDVNT---GEMLNTLI-----H----HCEAVLHLRFN--NGMMVTCS 230 (435)
T ss_dssp -CSSEEEEEET---------------TS-CEEEEESSS---CCEEEEEC-----C----CCSCEEEEECC--TTEEEEEE
T ss_pred -CCCEEEEEcC---------------CC-eEEEEECCC---CcEEEEEc-----C----CCCcEEEEEEc--CCEEEEee
Confidence 8898888765 22 333344322 11121111 0 12345667775 45777777
Q ss_pred CCCCcEEEEEecCCCCceE----------eeEEee-Ccee---cCCCceEEecCCCCCCCCCcceeecccccCCcceEEE
Q psy11412 199 WMHGDIRQYDIRDTAHPVL----------VGQIFL-GGKI---QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQL 264 (290)
Q Consensus 199 r~~~~V~v~Dv~d~~~~~~----------v~~i~~-Gg~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~ 264 (290)
.++.|.+||+........ +..+.. +..+ ..+++|.++|..... + ...+.+.. +... .+
T Consensus 231 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~-~~~~~~~~--~~v~--~~ 302 (435)
T 1p22_A 231 -KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE--F-VRTLNGHK--RGIA--CL 302 (435)
T ss_dssp -TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC--E-EEEEECCS--SCEE--EE
T ss_pred -CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc--E-EEEEcCCC--CcEE--EE
Confidence 689999999965332211 111111 1111 467889999865421 0 00111111 2334 44
Q ss_pred ccCCCEEEEEcCC
Q psy11412 265 SLDGKRIYVSSSL 277 (290)
Q Consensus 265 sPDG~~L~Van~~ 277 (290)
..+|++|++++.-
T Consensus 303 ~~~~~~l~~g~~d 315 (435)
T 1p22_A 303 QYRDRLVVSGSSD 315 (435)
T ss_dssp EEETTEEEEEETT
T ss_pred EeCCCEEEEEeCC
Confidence 5599998888753
No 276
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.75 E-value=0.00031 Score=70.05 Aligned_cols=54 Identities=4% Similarity=0.036 Sum_probs=35.5
Q ss_pred CceeEEEEEecCCCccCCCCCCCCCCC-ceEEEEEcCCCCEEEEEeCCCC---------------eEEEEEcCC
Q psy11412 7 GTYKADKVIDIPAKQVQGYPGGDKVPA-MVTDILISLDDRYLYTSNWMHG---------------DIRQYDIRD 64 (290)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~p~~va~SpDGr~Lyva~~~~g---------------~V~v~dv~d 64 (290)
.+|..-.+.|+..++..... +.. ...++++||||++||.+..... .|.+|++..
T Consensus 148 ~~~~~i~v~d~~tg~~~~~~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t 217 (710)
T 2xdw_A 148 SDWVTIKFMKVDGAKELPDV----LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT 217 (710)
T ss_dssp CSCEEEEEEETTTTEEEEEE----EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS
T ss_pred CceEEEEEEECCCCCCCccc----ccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCC
Confidence 35667788888877654321 111 2356899999999988865322 288888754
No 277
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.71 E-value=0.0018 Score=57.29 Aligned_cols=168 Identities=9% Similarity=0.006 Sum_probs=90.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCce
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQ 113 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gPr 113 (290)
.++.+.++|||++|++.....+.|..++. ..+.+.++...... ..+ -..++
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~----~Gk~l~~~~~~~~~-----------------~~~--------~~~~~ 128 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM----KGEVLSKTEFETGI-----------------ERP--------HAQFR 128 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT----TSCEEEEEEECCSC-----------------SSG--------GGSCS
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC----CCCEEEEEeccCCC-----------------Ccc--------ccccc
Confidence 56788999999999876543566666653 23444444332100 000 02567
Q ss_pred EEEEccCCCEEEEEcCCCCCcceeecccccCCCceeecceeeeeeecccccccCccccCccccCCCCceeEEEEccCCCE
Q psy11412 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193 (290)
Q Consensus 114 ~vafsPdG~~lYv~nel~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~SpDGr~ 193 (290)
.+++.++|+++++... .+.+..++.. .+. .|.+..+..+..+.+.++|+.
T Consensus 129 ~v~~~~~G~~lv~~~~----------------~~~v~~~d~~----G~~----------~w~~~~~~~~~~~~~~~~g~~ 178 (276)
T 3no2_A 129 QINKNKKGNYLVPLFA----------------TSEVREIAPN----GQL----------LNSVKLSGTPFSSAFLDNGDC 178 (276)
T ss_dssp CCEECTTSCEEEEETT----------------TTEEEEECTT----SCE----------EEEEECSSCCCEEEECTTSCE
T ss_pred CceECCCCCEEEEecC----------------CCEEEEECCC----CCE----------EEEEECCCCccceeEcCCCCE
Confidence 7899999998876543 1122111110 000 122222234566888999998
Q ss_pred EEEEeCCCCcEEEEEecCCCCceEeeEEe------------eCceecCCCceEEecCCCCCCCCCcceeecccc----cC
Q psy11412 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIF------------LGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRF----TG 257 (290)
Q Consensus 194 Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~------------~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~ 257 (290)
|++.. .++.|..||..+ .+.+-++. .+..+..++.+.|.+-. |.-. .+
T Consensus 179 ~v~~~-~~~~v~~~d~~t---G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~------------g~~~~~~~~~ 242 (276)
T 3no2_A 179 LVACG-DAHCFVQLNLES---NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ------------GHDREAGKGK 242 (276)
T ss_dssp EEECB-TTSEEEEECTTT---CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC------------TTCTTGGGSC
T ss_pred EEEeC-CCCeEEEEeCcC---CcEEEEecCCCCCCccccccccceEcCCCCEEEEecc------------CccccccccC
Confidence 77665 566788886532 33333332 12222445555554411 1000 02
Q ss_pred CcceEEEccCCCEEEEEcC
Q psy11412 258 SSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 258 ~P~~~a~sPDG~~L~Van~ 276 (290)
.++.+.|+|+|+.++--+.
T Consensus 243 ~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 243 HPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CCSEEEECTTSBEEEEECC
T ss_pred CceEEEECCCCCEEEEecC
Confidence 5688999999998887544
No 278
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.64 E-value=0.003 Score=58.48 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=52.8
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecCCC-------CceEeeEEeeCce-e---cCCCceEEecCCCCCCCCCcce
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA-------HPVLVGQIFLGGK-I---QSDSGVTVIDDPELDKQPDPVI 249 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~-------~~~~v~~i~~Gg~-~---~~~~~v~~~~~~~~~~~~~~~~ 249 (290)
....+.+ ||++|+++. .++.|.+||+.... +...+..+...+. + ..+++|.++|...... ...
T Consensus 241 ~v~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~ 314 (445)
T 2ovr_B 241 AVRCVQY--DGRRVVSGA-YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC---IHT 314 (445)
T ss_dssp CEEEEEE--CSSCEEEEE-TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE---EEE
T ss_pred cEEEEEE--CCCEEEEEc-CCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE---EEE
Confidence 3455555 899998888 68999999985421 0011111111111 1 5678899998654210 001
Q ss_pred eecccccCCcceEEEccCCCEEEEEcC--CCCCCCc
Q psy11412 250 IKGRRFTGSSQMFQLSLDGKRIYVSSS--LFSPWDK 283 (290)
Q Consensus 250 ~~~~~~~~~P~~~a~sPDG~~L~Van~--~~~~~~~ 283 (290)
+.+. ...-..++++|++|++++. .+.-||-
T Consensus 315 ~~~~----~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 315 LTGH----QSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp ECCC----CSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EcCC----cccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 1111 2345577889999999877 3444543
No 279
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.60 E-value=0.00069 Score=67.39 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=20.7
Q ss_pred eEEEEccCCCEEEEEeCCC------------CcEEEEEecC
Q psy11412 183 TDILISLDDRYLYTSNWMH------------GDIRQYDIRD 211 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~~------------~~V~v~Dv~d 211 (290)
..+++||||+.||.+.... ..|.+|++..
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t 211 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT 211 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence 4689999999887765322 2388888853
No 280
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.55 E-value=0.0013 Score=63.08 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCCeEEEEEc
Q psy11412 34 MVTDILISLDDR-YLYTSNWMHGDIRQYDI 62 (290)
Q Consensus 34 ~p~~va~SpDGr-~Lyva~~~~g~V~v~dv 62 (290)
.|.+|+|.|||+ +|||+.. .|.|++++-
T Consensus 15 ~P~~~a~~pdG~~rl~V~er-~G~i~~~~~ 43 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEK-EGYVKILTP 43 (463)
T ss_dssp SEEEEECCSSSSCCEEEEET-TTEEEEECT
T ss_pred CceEEEECCCCCeEEEEEeC-CceEEEEeC
Confidence 799999999996 7888876 689998864
No 281
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.51 E-value=0.00079 Score=62.38 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=22.3
Q ss_pred CceeEEEEccC---CCEEEEEe--CCCCcEEEEEec
Q psy11412 180 SMVTDILISLD---DRYLYTSN--WMHGDIRQYDIR 210 (290)
Q Consensus 180 ~~~~~i~~SpD---Gr~Lyvs~--r~~~~V~v~Dv~ 210 (290)
..+.+|+|+|| .++||++- ...+.|.-|...
T Consensus 80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~ 115 (347)
T 3das_A 80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD 115 (347)
T ss_dssp BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence 46789999997 67889852 235677777664
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.49 E-value=0.0017 Score=59.81 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=26.5
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEecC
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
.+.+|+++|||+.|++..- .+.+..||+..
T Consensus 186 G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 186 GYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp SCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred CcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 4678999999999999985 89999999864
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.43 E-value=0.0021 Score=64.98 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=21.8
Q ss_pred eeEEEEccCCCEEEEEeC--CCCcEEEEEecC
Q psy11412 182 VTDILISLDDRYLYTSNW--MHGDIRQYDIRD 211 (290)
Q Consensus 182 ~~~i~~SpDGr~Lyvs~r--~~~~V~v~Dv~d 211 (290)
..++.+||||++|+.+.. ....|.++|+.+
T Consensus 273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 456889999999886543 245688888754
No 284
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.39 E-value=0.00088 Score=64.07 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=22.8
Q ss_pred CceeEEEEccC---CCEEEEEeCC------------CCcEEEEEec
Q psy11412 180 SMVTDILISLD---DRYLYTSNWM------------HGDIRQYDIR 210 (290)
Q Consensus 180 ~~~~~i~~SpD---Gr~Lyvs~r~------------~~~V~v~Dv~ 210 (290)
..+.+|+|+|| +++||++... .+.|..|+.+
T Consensus 77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~ 122 (454)
T 1cru_A 77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYN 122 (454)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEE
T ss_pred CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEEC
Confidence 45678999998 8899998732 2457777664
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.28 E-value=0.0034 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIR 63 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~ 63 (290)
+|.++++++.+.++|+++...++|..|+..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~ 43 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPK 43 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCC
Confidence 789999999999999999889999999875
No 286
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.97 E-value=0.0053 Score=58.92 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.9
Q ss_pred CCceEEEEccCCC-EEEEEcC
Q psy11412 110 GSSQMFQLSLDGK-RIYVSSS 129 (290)
Q Consensus 110 ~gPr~vafsPdG~-~lYv~ne 129 (290)
..|++|+|.|||+ +|||+..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er 34 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEK 34 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEET
T ss_pred CCceEEEECCCCCeEEEEEeC
Confidence 5899999999996 7888754
No 287
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.92 E-value=0.012 Score=58.70 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=33.8
Q ss_pred CceeEEEEEecCCCccCCCCCCCCCCCc-eEEEEEcCCCCEEEEEeCCC------------CeEEEEEcCC
Q psy11412 7 GTYKADKVIDIPAKQVQGYPGGDKVPAM-VTDILISLDDRYLYTSNWMH------------GDIRQYDIRD 64 (290)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-p~~va~SpDGr~Lyva~~~~------------g~V~v~dv~d 64 (290)
.+|..-.+.|+..++.... .+... ..++++| ||+.||.+.... ..|.+|++..
T Consensus 152 ~~~~~i~v~dl~tg~~~~~----~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt 217 (693)
T 3iuj_A 152 SDWREIHLMDVESKQPLET----PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGT 217 (693)
T ss_dssp CCEEEEEEEETTTCSEEEE----EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTS
T ss_pred CceEEEEEEECCCCCCCcc----ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCC
Confidence 4578888999988764321 12222 2467899 999998876532 2377777643
No 288
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=96.88 E-value=0.016 Score=54.33 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCC
Q psy11412 30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA 66 (290)
Q Consensus 30 ~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~ 66 (290)
+++. +++++| ||++|+++ .++.|++||+....
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~--~~~~l~v~dv~sl~ 117 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS--TRNALYSLDLEELS 117 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE--ESSEEEEEESSSTT
T ss_pred eCCC-eeEEEE--CCCEEEEE--cCCcEEEEEchhhh
Confidence 4677 999999 99999999 35899999997643
No 289
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=96.79 E-value=0.0041 Score=58.35 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEEcCC
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d 64 (290)
....++++++.+.+++++. +.+.+|++.+
T Consensus 39 ~~nlLais~~~gll~a~~~--~~l~v~~~~~ 67 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASG--SKAVVGELQL 67 (388)
T ss_dssp CCBCEEEETTTTEEEEEET--TEEEEEEHHH
T ss_pred cccEEEEcCCCCEEEEeCC--CEEEEEEhhH
Confidence 3567999999999998875 4788899764
No 290
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=96.64 E-value=0.028 Score=56.23 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCEEEEEeCC----CCeEEEEEcCC
Q psy11412 34 MVTDILISLDDRYLYTSNWM----HGDIRQYDIRD 64 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~----~g~V~v~dv~d 64 (290)
...++.+||||++|+.+... ...|.+||+..
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 46789999999998877532 34899999865
No 291
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.50 E-value=0.018 Score=57.62 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=28.2
Q ss_pred EEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 184 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 184 ~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
+..++.+|..||++. .++.+.+||..+ .+.+-++.++.
T Consensus 481 ~g~~~~~g~~v~~g~-~dg~l~a~D~~t---G~~lw~~~~~~ 518 (677)
T 1kb0_A 481 GGTLTTAGNVVFQGT-ADGRLVAYHAAT---GEKLWEAPTGT 518 (677)
T ss_dssp CCEEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred CcceEeCCCEEEEEC-CCCcEEEEECCC---CceeeeeeCCC
Confidence 345788899999986 789999999853 45666666554
No 292
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.40 E-value=0.015 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 185 ILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
.+++++|+.||-++.+..+|.+.++.
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETT
T ss_pred eEeeEECCEEEEEeCCCceEEEEECC
Confidence 34689999999887677889988874
No 293
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.65 E-value=0.15 Score=49.75 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=23.9
Q ss_pred EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
+...|..||+++ .++.|.+||..+ .+.+-++.++.
T Consensus 471 ~~t~gg~v~~g~-~dg~l~a~D~~t---G~~lw~~~~~~ 505 (571)
T 2ad6_A 471 LYTKGGLVWYAT-LDGYLKALDNKD---GKELWNFKMPS 505 (571)
T ss_dssp EEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred EEECCCEEEEEc-CCCeEEEEECCC---CCEEEEEeCCC
Confidence 344567788876 678999998743 45666666654
No 294
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.61 E-value=0.12 Score=46.32 Aligned_cols=25 Identities=0% Similarity=-0.111 Sum_probs=18.5
Q ss_pred EEccCCCEEEEE-eCCCCcEEEEEec
Q psy11412 186 LISLDDRYLYTS-NWMHGDIRQYDIR 210 (290)
Q Consensus 186 ~~SpDGr~Lyvs-~r~~~~V~v~Dv~ 210 (290)
.|+|+|++||-+ .+..+.|...+++
T Consensus 229 ~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 229 HYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEETTEEEEEECSSSCEEEEEETT
T ss_pred eEEECCCEEEEEECCCCcEEEEEECC
Confidence 489999999976 4445677777763
No 295
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.17 E-value=0.23 Score=49.42 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=22.7
Q ss_pred EEEccCC---CEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412 185 ILISLDD---RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL 223 (290)
Q Consensus 185 i~~SpDG---r~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~ 223 (290)
+.+..|| +.||+.+ .++.|.++|..+ .+++..++.
T Consensus 318 ~~~~~dG~~~~~l~~~~-~~G~l~~lD~~t---G~~l~~~~~ 355 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAP-KNGFFFVLDRTN---GKFISAKNF 355 (677)
T ss_dssp EEEEETTEEEEEEEECC-TTSEEEEEETTT---CCEEEEEES
T ss_pred EecccCCcEeeEEEEEC-CCCEEEEEECCC---CCEeccccc
Confidence 3444589 5677777 588999998753 445554443
No 296
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.17 E-value=0.081 Score=53.31 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=12.7
Q ss_pred ceEEEccCCCEEEEEc
Q psy11412 260 QMFQLSLDGKRIYVSS 275 (290)
Q Consensus 260 ~~~a~sPDG~~L~Van 275 (290)
..+.+||||++|+...
T Consensus 274 ~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 274 AFMYKAADTNTLCIGS 289 (751)
T ss_dssp EEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEe
Confidence 3578999999988764
No 297
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=94.52 E-value=0.083 Score=51.96 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=17.8
Q ss_pred CcceEEEccCCCEEEEEcC
Q psy11412 258 SSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 258 ~P~~~a~sPDG~~L~Van~ 276 (290)
.|.+++||||+++|||+.+
T Consensus 532 EpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 532 EVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEEECTTSSEEEEEEE
T ss_pred cccCCEECCCCCEEEEEEe
Confidence 5899999999999999987
No 298
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=93.65 E-value=0.21 Score=49.10 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.0
Q ss_pred CCCceEEEEccCCCEEEEEcC
Q psy11412 109 TGSSQMFQLSLDGKRIYVSSS 129 (290)
Q Consensus 109 g~gPr~vafsPdG~~lYv~ne 129 (290)
+..|.+++||||+++|||+-.
T Consensus 530 ~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 530 GCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp TCEEEEEEECTTSSEEEEEEE
T ss_pred CccccCCEECCCCCEEEEEEe
Confidence 367899999999999999754
No 299
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.50 E-value=1.8 Score=43.06 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=25.6
Q ss_pred EEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412 186 LISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG 224 (290)
Q Consensus 186 ~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G 224 (290)
.++..|..||+++ .++.|.+||..+ .+.+-+..++
T Consensus 481 ~~~tagglvf~gt-~dg~l~a~D~~t---G~~lw~~~~~ 515 (689)
T 1yiq_A 481 TLSTAGNLVFEGS-ADGRVIAYAADT---GEKLWEQPAA 515 (689)
T ss_dssp EEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECS
T ss_pred cceECCCEEEEEC-CCCcEEEEECCC---CccceeeeCC
Confidence 5677888889887 789999999853 4555555554
No 300
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.08 E-value=5.3 Score=38.66 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=14.9
Q ss_pred ceEEEccCCCEEEEEcC
Q psy11412 260 QMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 260 ~~~a~sPDG~~L~Van~ 276 (290)
..++++|++++||+.+.
T Consensus 389 ~~~a~dp~~g~~yv~~~ 405 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLN 405 (571)
T ss_dssp CBCEEETTTTEEEEEEE
T ss_pred CCceECCCCCEEEEEch
Confidence 67999999999999853
No 301
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=90.20 E-value=0.89 Score=44.81 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.5
Q ss_pred CCCceEEEEccCCCEEEEE
Q psy11412 109 TGSSQMFQLSLDGKRIYVS 127 (290)
Q Consensus 109 g~gPr~vafsPdG~~lYv~ 127 (290)
++...+++|+|||++|||.
T Consensus 530 gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 530 GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TCEEEEEEECTTSSEEEEE
T ss_pred CccCcCeeECCCCCEEEEE
Confidence 4677889999999999985
No 302
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=89.73 E-value=0.86 Score=44.93 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.3
Q ss_pred CcceEEEccCCCEEEEEcC
Q psy11412 258 SSQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 258 ~P~~~a~sPDG~~L~Van~ 276 (290)
-.-+++|+|||++|||+-+
T Consensus 532 E~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 532 EVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEEECTTSSEEEEEEE
T ss_pred cCcCeeECCCCCEEEEEEE
Confidence 4567999999999999866
No 303
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.57 E-value=4.3 Score=35.17 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCeEEEEE
Q psy11412 34 MVTDILISLDDRYLYTSNWMHGDIRQYD 61 (290)
Q Consensus 34 ~p~~va~SpDGr~Lyva~~~~g~V~v~d 61 (290)
....++|+|||+ ||+. .+|.+.-.+
T Consensus 42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~ 66 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV--LNDKIYKGT 66 (236)
T ss_dssp TCSEEEECTTSC-EEEE--ETTEEEEES
T ss_pred cceeEEECCCcc-EEEE--eCCeEEEEC
Confidence 345899999888 7877 357755444
No 304
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=88.80 E-value=2.2 Score=42.13 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=26.1
Q ss_pred EEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 185 i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
..++..|..||+++ .++.|.+||..+ .+.+.++.++.
T Consensus 463 ~~~~t~gg~vf~g~-~dg~l~a~d~~t---G~~l~~~~~~~ 499 (668)
T 1kv9_A 463 GTLSTAGNLVFQGT-AAGQMHAYSADK---GEALWQFEAQS 499 (668)
T ss_dssp CEEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred ceeEeCCCEEEEEC-Ccccchhhhhhc---ChhheEecCCC
Confidence 34566788899887 689999998753 45566665543
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.71 E-value=22 Score=33.69 Aligned_cols=171 Identities=12% Similarity=0.117 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeecccccCCCceEEecCCCCcCCCCcceeeccccCCCc
Q psy11412 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS 112 (290)
Q Consensus 33 ~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~gP 112 (290)
..........+|+.|+++. ++.||.-++.+...=+.+ .+.. + . .-..+
T Consensus 21 ~s~R~~~~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L---~~~~------~--------------------i-~f~~i 68 (452)
T 3pbp_A 21 QSPRYIFSSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSL---NFSR------H--------------------L-VLDDT 68 (452)
T ss_dssp -CCEEEEEETTTTEEEEEE--TTEEEEEETTTCSSCEEE---ECTT------T--------------------C-CCCTT
T ss_pred CCCcEEEEEcCCCEEEEEE--CCEEEEEECCCCCcceEE---ecCc------c--------------------c-ccCce
Confidence 3555666778899998886 478998888753211121 1110 0 0 01357
Q ss_pred eEEEEccCCCEEEEEcCCCCCcceeecccc-cCCCc-ee-ecceeeeeeecccccccCccccCccccCCCCceeEEEEcc
Q psy11412 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDL-VKTDA-AF-GSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189 (290)
Q Consensus 113 r~vafsPdG~~lYv~nel~~~~d~~~~~~~-~~~g~-~~-~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~i~~Sp 189 (290)
+++.+||+|++|++.++ .++.+...|+. ....+ .+ ..++...+ ..+.... . .......+.++|
T Consensus 69 ~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty---------~l~~~~~--~-~~s~I~qVlWHP 134 (452)
T 3pbp_A 69 FHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQDAFQIFHY---------SIDEEEV--G-PKSSIKKVLFHP 134 (452)
T ss_dssp CEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHHHTTEEEEE---------EGGGCC-----CCCCEEEEEECT
T ss_pred eEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccccccceeEE---------EcCCccc--C-CCCceeEEEecc
Confidence 88999999999999977 44555444421 00000 00 01111110 0000000 0 012455677777
Q ss_pred C---CCEEEEEeCCCCcEEEEEecC-CCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceEEEc
Q psy11412 190 D---DRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLS 265 (290)
Q Consensus 190 D---Gr~Lyvs~r~~~~V~v~Dv~d-~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~a~s 265 (290)
- |..|.+=. .++.|++||+.. ...|..+.. .. +.+.- +... ..+.+++|+
T Consensus 135 l~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k-~~-~~fg~-------d~~~----------------~ev~S~~Fg 188 (452)
T 3pbp_A 135 KSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNK-PN-NSFGL-------DARV----------------NDITDLEFS 188 (452)
T ss_dssp TBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESC-CC-SEEES-------CSSC----------------CCEEEEEEC
T ss_pred ccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhc-cc-cccCC-------Cccc----------------ceEEEEEEc
Confidence 3 55677666 688999999964 122221110 00 00000 0000 147889999
Q ss_pred cCCCEEEEEc
Q psy11412 266 LDGKRIYVSS 275 (290)
Q Consensus 266 PDG~~L~Van 275 (290)
.+|=+||++.
T Consensus 189 ~~~lTLYvl~ 198 (452)
T 3pbp_A 189 KDGLTLYCLN 198 (452)
T ss_dssp TTSSCEEEEE
T ss_pred CCCcEEEEEe
Confidence 9999999976
No 306
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=86.08 E-value=0.27 Score=44.85 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCeEEEEEcCC
Q psy11412 43 DDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 43 DGr~Lyva~~~~g~V~v~dv~d 64 (290)
++.+||+++. +|.|.+||..+
T Consensus 8 ~~~~v~~gs~-dg~v~a~d~~t 28 (369)
T 2hz6_A 8 PETLLFVSTL-DGSLHAVSKRT 28 (369)
T ss_dssp CTTEEEEEET-TSEEEEEETTT
T ss_pred eCCEEEEEcC-CCEEEEEECCC
Confidence 6889999885 78999999865
No 307
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=86.06 E-value=5.1 Score=34.32 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCCeEEEEEcC
Q psy11412 35 VTDILISLDDRYLYTSNWMHGDIRQYDIR 63 (290)
Q Consensus 35 p~~va~SpDGr~Lyva~~~~g~V~v~dv~ 63 (290)
...++++++|+ ||++.. ++.|..||..
T Consensus 139 ~~~~~~~~~g~-l~vgt~-~~~l~~~d~~ 165 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSN-DNYLYAINPD 165 (330)
T ss_dssp CSCCEECTTSC-EEEECT-TSEEEEECTT
T ss_pred eeeeEEcCCCE-EEEEcC-CCEEEEECCC
Confidence 34446788888 555664 4678888764
No 308
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.76 E-value=2.8 Score=38.90 Aligned_cols=77 Identities=12% Similarity=0.247 Sum_probs=47.7
Q ss_pred CceeEEEEc---cC----CCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCC-ceEEecCCCCCCCCCcceee
Q psy11412 180 SMVTDILIS---LD----DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS-GVTVIDDPELDKQPDPVIIK 251 (290)
Q Consensus 180 ~~~~~i~~S---pD----Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~-~v~~~~~~~~~~~~~~~~~~ 251 (290)
....+|++. |+ +.++|+++-+...|.|+|+.+....++. . ..+..+. ....+ .
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~-~----~~~~pd~~~~~~i--------------~ 212 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT-H----PTFKAERPTKFDY--------------G 212 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE-C----GGGSCCSCEEEEE--------------T
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc-c----CCCccccCcceEE--------------C
Confidence 466788888 33 6899999988899999999653222222 1 1111111 11111 1
Q ss_pred ccc--ccCCcceEEEccC----CCEEEEEc
Q psy11412 252 GRR--FTGSSQMFQLSLD----GKRIYVSS 275 (290)
Q Consensus 252 ~~~--~~~~P~~~a~sPD----G~~L~Van 275 (290)
|.. +..+..+|+|||+ +++||-.-
T Consensus 213 G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 213 GKEYEFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp TEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred CEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence 222 1347899999999 89999763
No 309
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.98 E-value=2.4 Score=36.78 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=14.1
Q ss_pred cceEEEccCCCEEEEEcC
Q psy11412 259 SQMFQLSLDGKRIYVSSS 276 (290)
Q Consensus 259 P~~~a~sPDG~~L~Van~ 276 (290)
-..+.|+|+|..-+|++.
T Consensus 137 ~~~lff~p~G~Lyav~dg 154 (236)
T 1tl2_A 137 FKFLFFHPNGYLYAVHGQ 154 (236)
T ss_dssp EEEEEECTTSCEEEEETT
T ss_pred eEEEEECCCceEEEEeCC
Confidence 477999999997777743
No 310
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=82.77 E-value=24 Score=34.69 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=14.3
Q ss_pred cceEEEccCCCEEEEEc
Q psy11412 259 SQMFQLSLDGKRIYVSS 275 (290)
Q Consensus 259 P~~~a~sPDG~~L~Van 275 (290)
...++++|+.+++||..
T Consensus 383 w~~~a~dp~~g~~yv~~ 399 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPY 399 (668)
T ss_dssp SSCCEEETTTTEEEEEE
T ss_pred CCcceECCCCCEEEEec
Confidence 45699999999999963
No 311
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=82.45 E-value=18 Score=35.09 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=21.8
Q ss_pred cCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCc
Q psy11412 189 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225 (290)
Q Consensus 189 pDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg 225 (290)
..|..+|+++ .++.+..||..+ .+++-+..++.
T Consensus 495 tagglvf~g~-~dg~l~A~D~~t---G~~lW~~~~~~ 527 (582)
T 1flg_A 495 TAGNLVFTGT-GDGYFKAFDAKS---GKELWKFQTGS 527 (582)
T ss_dssp ETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECSS
T ss_pred eCCCEEEEEC-CCCcEEEEECCC---CCEEEEecCCC
Confidence 3566788877 688999998743 45555555543
No 312
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=81.95 E-value=5.6 Score=35.23 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=19.8
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCceEeeEEee
Q psy11412 191 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL 223 (290)
Q Consensus 191 Gr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~ 223 (290)
+..||+.. .++.|.+||..+ .+.+.+...
T Consensus 318 ~~~l~v~~-~~g~l~~~d~~t---G~~~~~~~~ 346 (376)
T 3q7m_A 318 NGNLVVGD-SEGYLHWINVED---GRFVAQQKV 346 (376)
T ss_dssp TTEEEEEC-TTSEEEEEETTT---CCEEEEEEC
T ss_pred CCEEEEEe-CCCeEEEEECCC---CcEEEEEec
Confidence 56889888 577899998753 345555444
No 313
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=79.85 E-value=47 Score=32.33 Aligned_cols=18 Identities=0% Similarity=-0.044 Sum_probs=15.5
Q ss_pred CcceEEEccCCCEEEEEc
Q psy11412 258 SSQMFQLSLDGKRIYVSS 275 (290)
Q Consensus 258 ~P~~~a~sPDG~~L~Van 275 (290)
....++++|+.+++|+..
T Consensus 394 ~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 394 NQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp CSCBCEEETTTTEEEEEE
T ss_pred CCCCccCCCCCCEEEEec
Confidence 467899999999999974
No 314
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=79.61 E-value=37 Score=33.07 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=21.9
Q ss_pred EccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeC
Q psy11412 187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG 224 (290)
Q Consensus 187 ~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~G 224 (290)
++-.|..||+++ .++.+..||..+ .+++-+..++
T Consensus 480 ~~tagg~vf~gt-~dg~l~A~D~~t---G~~lW~~~l~ 513 (599)
T 1w6s_A 480 MATAGDLVFYGT-LDGYLKARDSDT---GDLLWKFKIP 513 (599)
T ss_dssp EEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECS
T ss_pred eEecCCEEEEEC-CCCeEEEEECCC---CCEEEEeeCC
Confidence 344667788876 688899998753 3444444444
No 315
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=72.63 E-value=59 Score=31.42 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=18.3
Q ss_pred EEEEccCCCEEEEEeCCC-----CcEEEEEec
Q psy11412 184 DILISLDDRYLYTSNWMH-----GDIRQYDIR 210 (290)
Q Consensus 184 ~i~~SpDGr~Lyvs~r~~-----~~V~v~Dv~ 210 (290)
.+++.+||+.+.+..+.+ +++.+||..
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 456678998765555322 679999874
No 316
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=67.69 E-value=62 Score=28.18 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=13.2
Q ss_pred CceEEEEccCCCEEEEEc
Q psy11412 111 SSQMFQLSLDGKRIYVSS 128 (290)
Q Consensus 111 gPr~vafsPdG~~lYv~n 128 (290)
....++++|+++.+++..
T Consensus 164 ~~~~~~~~~~~~~~~~g~ 181 (327)
T 2xbg_A 164 VMRNLNRSPSGEYVAVSS 181 (327)
T ss_dssp CEEEEEECTTSCEEEEET
T ss_pred ceEEEEEcCCCcEEEEEC
Confidence 456789999998766543
No 317
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=65.48 E-value=60 Score=27.25 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=13.5
Q ss_pred EEEEccCCCEEEEEeCCCCcEEEEE
Q psy11412 184 DILISLDDRYLYTSNWMHGDIRQYD 208 (290)
Q Consensus 184 ~i~~SpDGr~Lyvs~r~~~~V~v~D 208 (290)
.+.+.++|+ ||++. +.|..||
T Consensus 181 ~~~~d~~g~-l~v~t---~~l~~~d 201 (330)
T 3hxj_A 181 AASIGKDGT-IYFGS---DKVYAIN 201 (330)
T ss_dssp CCEECTTCC-EEEES---SSEEEEC
T ss_pred eeEEcCCCE-EEEEe---CEEEEEC
Confidence 456677776 46555 5677776
No 318
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=47.14 E-value=33 Score=33.82 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=38.2
Q ss_pred eEEEEEecCCCccCCCCCCCCCCCceEEEEEcCCCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeec
Q psy11412 10 KADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG 77 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~~p~~va~SpDGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g 77 (290)
..-..+|+.++++.-.. +.+....+-.++..|..||+++ .+|.|++||..+ .+++-+..++
T Consensus 455 g~l~A~D~~tG~~~W~~---~~~~~~~~g~~~tagglvf~gt-~dg~l~a~D~~t---G~~lw~~~~~ 515 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEV---PYVTIFNGGTLSTAGNLVFEGS-ADGRVIAYAADT---GEKLWEQPAA 515 (689)
T ss_dssp EEEEEEETTTTEEEEEE---EESSSCCCCEEEETTTEEEEEC-TTSEEEEEETTT---CCEEEEEECS
T ss_pred eeEEEEECCCCCeEeEc---cCCCCccCccceECCCEEEEEC-CCCcEEEEECCC---CccceeeeCC
Confidence 44556788877655433 2332223335667888999886 489999999865 4455444443
No 319
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=39.54 E-value=1.8e+02 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=16.7
Q ss_pred CCCEEEEEeCCCCeEEEEEcCC
Q psy11412 43 DDRYLYTSNWMHGDIRQYDIRD 64 (290)
Q Consensus 43 DGr~Lyva~~~~g~V~v~dv~d 64 (290)
++.+||+++. ++.|..||..+
T Consensus 52 ~~~~v~~~~~-~g~v~a~d~~t 72 (376)
T 3q7m_A 52 ADNVVYAADR-AGLVKALNADD 72 (376)
T ss_dssp ETTEEEEECT-TSEEEEEETTT
T ss_pred ECCEEEEEcC-CCeEEEEEccC
Confidence 4778898875 67999999865
No 320
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=39.01 E-value=1.8e+02 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=22.4
Q ss_pred ceeEEEEccCCCEEEEEeCCCCcEEEEEec
Q psy11412 181 MVTDILISLDDRYLYTSNWMHGDIRQYDIR 210 (290)
Q Consensus 181 ~~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~ 210 (290)
..+++++..||+.+.+.....+.+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSS 273 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCc
Confidence 345678899998766666556789999974
No 321
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=28.57 E-value=47 Score=29.55 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=17.0
Q ss_pred CCCEEEEEeCCCCcEEEEEecC
Q psy11412 190 DDRYLYTSNWMHGDIRQYDIRD 211 (290)
Q Consensus 190 DGr~Lyvs~r~~~~V~v~Dv~d 211 (290)
+|..||++. .++.|..||..+
T Consensus 8 ~~~~v~~gs-~dg~v~a~d~~t 28 (369)
T 2hz6_A 8 PETLLFVST-LDGSLHAVSKRT 28 (369)
T ss_dssp CTTEEEEEE-TTSEEEEEETTT
T ss_pred eCCEEEEEc-CCCEEEEEECCC
Confidence 678889988 678899998753
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=28.05 E-value=1.8e+02 Score=27.40 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=38.5
Q ss_pred eEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCCCcceeecccccCCcceE
Q psy11412 183 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 262 (290)
Q Consensus 183 ~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 262 (290)
+-.....+|+.||++. ++.|+.-++.+..+=+.+. +... .. -+..+.+
T Consensus 24 R~~~~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~---~~~~--------------------------i~-f~~i~ql 71 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLN---FSRH--------------------------LV-LDDTFHV 71 (452)
T ss_dssp EEEEEETTTTEEEEEE--TTEEEEEETTTCSSCEEEE---CTTT--------------------------CC-CCTTCEE
T ss_pred cEEEEEcCCCEEEEEE--CCEEEEEECCCCCcceEEe---cCcc--------------------------cc-cCceeEE
Confidence 3456778899988887 4678777775422111211 1000 00 0136779
Q ss_pred EEccCCCEEEEEcC
Q psy11412 263 QLSLDGKRIYVSSS 276 (290)
Q Consensus 263 a~sPDG~~L~Van~ 276 (290)
.+||+|++|++.+.
T Consensus 72 vlSpsG~lLAl~g~ 85 (452)
T 3pbp_A 72 ISSTSGDLLCLFND 85 (452)
T ss_dssp EECTTSSEEEEECS
T ss_pred EECCCCCEEEEecC
Confidence 99999999999876
No 323
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.50 E-value=3.3e+02 Score=26.01 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=45.5
Q ss_pred eeEEEEccCCCEEEEEeCCCCcEEEEEecCCCCceEeeEEeeCceecCCCceEEecCCCCCCCC---CcceeecccccCC
Q psy11412 182 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP---DPVIIKGRRFTGS 258 (290)
Q Consensus 182 ~~~i~~SpDGr~Lyvs~r~~~~V~v~Dv~d~~~~~~v~~i~~Gg~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~ 258 (290)
-.++++++++..||++.+ |.|...+. .+.......+|-. .|.+.= .+| ..=..+|..-...
T Consensus 20 ~~~l~~d~~~g~lyvGA~--n~ly~Ls~----~L~~~~~~~tgP~---------~ds~~C-~p~~~~~~C~~~~~~~dN~ 83 (539)
T 3al9_A 20 FNHLTVHRRTGAVYVGAI--NRVYKLTG----NLTIQVAHKTGPE---------EDNKAC-YPPLIVQPCSEVLTLTNNV 83 (539)
T ss_dssp EEEEEECTTTCCEEEEET--TEEEEECT----TCCEEEEEECCCE---------EECTTC-SSCTTTSCCCSCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEEe--eeEEECCC----CcccccccccCCc---------cCcccc-cCccchhhccccCCCCCce
Confidence 467999999999999985 45555442 3555566656532 111000 000 0000011111123
Q ss_pred cceEEEccCCCEEEEEcCCCCC
Q psy11412 259 SQMFQLSLDGKRIYVSSSLFSP 280 (290)
Q Consensus 259 P~~~a~sPDG~~L~Van~~~~~ 280 (290)
-+-+.+.+.+++||++...+.+
T Consensus 84 nkvLl~~~~~~~L~~CGS~~qg 105 (539)
T 3al9_A 84 NKLLIIDYSENRLLACGSLYQG 105 (539)
T ss_dssp EEEEEEEGGGTEEEEEESSTTT
T ss_pred EEEEEEecCCCeEEEeecCCCC
Confidence 4557777889999999876554
No 324
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=21.65 E-value=24 Score=22.02 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=10.0
Q ss_pred ceEEEccCCCEE
Q psy11412 260 QMFQLSLDGKRI 271 (290)
Q Consensus 260 ~~~a~sPDG~~L 271 (290)
.-+.++|||++|
T Consensus 31 dlikitpdgkrl 42 (50)
T 3tvt_B 31 DLIKITPDGKRM 42 (50)
T ss_pred CeEEecCCchhh
Confidence 458899999987
No 325
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=20.67 E-value=1.1e+02 Score=29.37 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=20.7
Q ss_pred CCCEEEEEeCCCCeEEEEEcCCCCCceeeeEEeec
Q psy11412 43 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG 77 (290)
Q Consensus 43 DGr~Lyva~~~~g~V~v~dv~d~~~~~~~~~i~~g 77 (290)
.|..+|+++. +|.|+.||.++ .+++-+..++
T Consensus 496 agglvf~g~~-dg~l~A~D~~t---G~~lW~~~~~ 526 (582)
T 1flg_A 496 AGNLVFTGTG-DGYFKAFDAKS---GKELWKFQTG 526 (582)
T ss_dssp TTTEEEEECT-TSEEEEEETTT---CCEEEEEECS
T ss_pred CCCEEEEECC-CCcEEEEECCC---CCEEEEecCC
Confidence 5677888764 78999999765 4444444443
Done!