RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11412
(290 letters)
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller,
structural genomics, unknown function; 2.00A {Sulfolobus
tokodaii}
Length = 462
Score = 133 bits (336), Expect = 4e-36
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 22/149 (14%)
Query: 1 FYRQSDGTYKADKVIDIPAKQVQG-----YPGGDKVPAMVTDILISLDDRYLYTSNWMHG 55
+ DG + A+KVI+IPA+ ++G VP +VTDI ISLDD++LY S W G
Sbjct: 284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343
Query: 56 DIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMF 115
++RQYDI + PVL G++ LGG + P G + TG+ QM
Sbjct: 344 EVRQYDISNPFKPVLTGKVKLGGIFH--------------RADHP---AGHKLTGAPQML 386
Query: 116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVK 144
++S DG+R+YV++SL+S WD + YP+ +K
Sbjct: 387 EISRDGRRVYVTNSLYSTWDNQFYPEGLK 415
Score = 112 bits (281), Expect = 2e-28
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 17/111 (15%)
Query: 180 SMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 239
+VTDI ISLDD++LY S W G++RQYDI + PVL G++ LGG
Sbjct: 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH----------- 369
Query: 240 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLV 290
+ P G + TG+ QM ++S DG+R+YV++SL+S WD + YP+ +
Sbjct: 370 ---RADHP---AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGL 414
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 42.5 bits (100), Expect = 9e-05
Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 88/289 (30%)
Query: 14 VIDI---PAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVL 70
I+ P K V G A V I+ DD++ T ++
Sbjct: 66 QIETQLEPPKVVAIQEGQS-SMADVD---ITPDDQFAVTVTGLNHPFNMQSY-SFLKNKF 120
Query: 71 VGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 130
+ I + G+ + S +G + +
Sbjct: 121 ISTIPIPYDA---VGIAI-----------------------------SPNGNGLILIDR- 147
Query: 131 FSPWDKEIYPDLVKTDAAFGSDEIMEF-IQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189
++ + F I + L G + +I +
Sbjct: 148 ------------------SSANTVRRFKIDADG----VLFDTGQEFISGGTRPFNITFTP 185
Query: 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG-----------GK-----IQSDSGV 233
D + + +N + I + ++ + L+ + G +S V
Sbjct: 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDV 245
Query: 234 TVIDDPELDKQPDPVIIKGRRFT------GSSQMFQLSLDGKRIYVSSS 276
+ V G + L+ ++++S++
Sbjct: 246 FNFNQL--SGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292
Score = 32.8 bits (75), Expect = 0.11
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 25/113 (22%)
Query: 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLG-----------GKI------ 227
+ I+ DD++ T ++ + I + G
Sbjct: 89 VDITPDDQFAVTVTGLNHPFNMQSY-SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR 147
Query: 228 QSDSGVTVID---DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 277
S + V D L I G R + DG +V++ +
Sbjct: 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFN----ITFTPDGNFAFVANLI 196
Score = 26.7 bits (59), Expect = 9.8
Identities = 4/56 (7%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 14 VIDIPAKQV-------QGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDI 62
+ + + G + + ++ + L+ S + +++ + I
Sbjct: 247 NFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI 302
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 42.2 bits (99), Expect = 1e-04
Identities = 38/283 (13%), Positives = 73/283 (25%), Gaps = 86/283 (30%)
Query: 14 VIDIPAKQVQG--YPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV 71
V+DI + Q P K + + + L+ S + + D
Sbjct: 148 VLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV---HVFDLKTLAYK 204
Query: 72 GQIFLGGKI-----------------QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS-Q 113
+ L GK ++VID + + +
Sbjct: 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID-------RKTKLEIRKTDKIGLPR 257
Query: 114 MFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGS 173
LS DGK +Y++ + + L +++++ I
Sbjct: 258 GLLLSKDGKELYIAQF-SASNQESGGGRLGIYSMD--KEKLIDTI--------------- 299
Query: 174 WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 233
I+ + +Y S+ I Y D + I +
Sbjct: 300 ---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVY---DLKEKKVQKSIPVFD-------- 345
Query: 234 TVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276
+P+ + + S DGK +YVS
Sbjct: 346 ----------KPNTIAL--------------SPDGKYLYVSCR 364
Score = 38.7 bits (90), Expect = 0.002
Identities = 37/225 (16%), Positives = 62/225 (27%), Gaps = 57/225 (25%)
Query: 14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIR----DTAHPV 69
VID K + +L+S D + LY + + + R
Sbjct: 238 VIDRKTKLEIRKT---DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294
Query: 70 LVGQIFLGGKI----------------QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS- 112
L+ I G S + V D ++
Sbjct: 295 LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD-------LKEKKVQKSIPVFDKP 347
Query: 113 QMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS--S 170
LS DGK +YVS G + E + + +
Sbjct: 348 NTIALSPDGKYLYVSCR--------------------GPNHPTEGYLKKGLVLGKVYVID 387
Query: 171 LGSWK----YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211
+ + A + T + +S D+RYL S+++ IR Y
Sbjct: 388 TTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432
Score = 29.9 bits (67), Expect = 1.0
Identities = 12/119 (10%), Positives = 29/119 (24%), Gaps = 23/119 (19%)
Query: 176 YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK--------- 226
++ + ++ + D H + + G +
Sbjct: 75 KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRF-ISRFKTGFQPKSVRFIDN 133
Query: 227 ------IQSDSGVTVID---DPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276
+ D G+ V+D + P K F + + ++VS
Sbjct: 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVET----ISIPEHNELWVSQM 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 44/324 (13%), Positives = 87/324 (26%), Gaps = 108/324 (33%)
Query: 29 DKVPAMVTDILISLDDRYLYTSNWMHGD-----------------IRQ--YDIRDTAHPV 69
+ P+M+T Y+ + ++ D +RQ ++R + +
Sbjct: 102 QRQPSMMTR-------MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 70 LVGQIFLGGKIQSDSGVTVI------DDPELDKQPDPV--IIKGRRFTGSSQMFQLSLDG 121
+ G + G SG T + K + + + + + L
Sbjct: 155 IDG---VLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---- 202
Query: 122 KRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSM 181
L D T + S I I + +++ L S Y
Sbjct: 203 ------QKLLYQIDPNW------TSRSDHSSNIKLRI--HSIQAELRRLLKSKPYE-NC- 246
Query: 182 VTDILISLDD--------------RYLYTSNWMHGDIRQYDIRD------TAHPVLVGQI 221
L+ L + + L T+ R + D T H L
Sbjct: 247 ----LLVLLNVQNAKAWNAFNLSCKILLTT-------RFKQVTDFLSAATTTHISLDHHS 295
Query: 222 FLGGKIQSDS------GVTVIDDPELDKQPDPVIIKG-----RRFTGSSQMF-QLSLDGK 269
+ S D P +P + R + + ++ D
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 270 RIYVSSSL--FSPWD-KEIYPDLV 290
+ SSL P + ++++ L
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLS 379
Score = 37.1 bits (85), Expect = 0.005
Identities = 36/246 (14%), Positives = 63/246 (25%), Gaps = 68/246 (27%)
Query: 39 LISLDD--------------RYLYTSNWMHGDIRQYDIRD------TAHPVLVGQIFLGG 78
L+ L + + L T+ R + D T H L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 79 KIQSDS------GVTVIDDPELDKQPDPVIIKG-----RRFTGSSQMF-QLSLDGKRIYV 126
+ S D P +P + R + + ++ D +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 127 SSSL--FSPWD-KEIYPDLVKTDAAFGSD-EIMEFIQRNEMRSMPLSSLGSWKYPARSMV 182
SSL P + ++++ L + F I + LS + W +S V
Sbjct: 360 ESSLNVLEPAEYRKMFDRL----SVFPPSAHIPTIL---------LSLI--WFDVIKSDV 404
Query: 183 TDILISLDDRYLYTSNWMHGDIRQYDI----------RDTAHPVLVGQIFLGGKIQSDSG 232
++ L L I I H +V + SD
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 233 VTVIDD 238
+ D
Sbjct: 465 IPPYLD 470
Score = 33.3 bits (75), Expect = 0.096
Identities = 51/328 (15%), Positives = 100/328 (30%), Gaps = 114/328 (34%)
Query: 35 VTDIL-------ISLDDRYL-YT--------SNWMHGDIRQYDIRDTA---HPVLVGQIF 75
VTD L ISLD + T ++ D R D+ +P + I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSII- 333
Query: 76 LGGKIQSDSGVTVID---DPELDKQPDPVIIKGRRFTGSSQMFQLSLDG------KRIYV 126
+ D G+ D DK + + + SL+ ++++
Sbjct: 334 --AESIRD-GLATWDNWKHVNCDKL--------------TTIIESSLNVLEPAEYRKMFD 376
Query: 127 SSSLFSP------------WDKEIYPD------------LVKTDAAFGSDEIMEF----- 157
S+F P W I D LV+ + I
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 158 IQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPV 216
++ ++ S + + P D++ D+Y Y+ H +I + V
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 217 LVGQIFLGGKIQSDSGV---------TVID-----------DPELDK----------QPD 246
+ FL KI+ DS T+ DP+ ++ + +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 247 PVIIKGRRFTGSSQMFQLSL--DGKRIY 272
+I + + + +++L + + I+
Sbjct: 557 ENLICSK----YTDLLRIALMAEDEAIF 580
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 37.4 bits (87), Expect = 0.003
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 2 YRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYD 61
Y G + ++ P I +S D +LY SN + + +
Sbjct: 216 YDTQTGAFTQLGIVKT-------IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268
Query: 62 IRDTAHPVLVGQIFLGGK 79
+ H L+ QI G
Sbjct: 269 VTADGHLTLIQQISTEGD 286
Score = 35.9 bits (83), Expect = 0.010
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 176 YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 226
Y A + I +S D +LY SN + + + + H L+ QI G
Sbjct: 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286
Score = 27.0 bits (60), Expect = 7.1
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 79
+ + + +Y++N+ G I L + G
Sbjct: 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH 132
Score = 27.0 bits (60), Expect = 7.1
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 226
+ + + +Y++N+ G I L + G
Sbjct: 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 36.7 bits (84), Expect = 0.006
Identities = 30/291 (10%), Positives = 72/291 (24%), Gaps = 34/291 (11%)
Query: 14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIR--------DT 65
VID V +++ R Y + + + D+ D
Sbjct: 15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74
Query: 66 AHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFT---------------- 109
+ P + G + D I + + + ++ R
Sbjct: 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP 134
Query: 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKE--IYPDLVKTDAAFGSDEIMEFIQRNEMRSMP 167
M + DG ++Y D E + + + +
Sbjct: 135 RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES 194
Query: 168 LSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI 227
+ + Y AR + + L T + G++ ++R +
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR 254
Query: 228 Q--SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276
+ + + D + + +S DG +++ +
Sbjct: 255 AFGAYNVLESFDLE--KNASIKRVPLPHSYYS----VNVSTDGSTVWLGGA 299
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 35.9 bits (83), Expect = 0.011
Identities = 52/298 (17%), Positives = 92/298 (30%), Gaps = 85/298 (28%)
Query: 14 VIDIPAKQVQG-YPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG 72
VID+ + +V P G +IS D +Y +N D+ I DTA ++
Sbjct: 16 VIDVTSNKVTATIPVGSNP----MGAVISPDGTKVYVANAHSNDV---SIIDTATNNVIA 68
Query: 73 QIFLGGK----------------IQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS-QMF 115
+ G + S ++VI D + + G TG S
Sbjct: 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI-DTTSNT------VAGTVKTGKSPLGL 121
Query: 116 QLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEF-IQRNEMRSMPLSSLGSW 174
LS DGK++YV+++ G + +
Sbjct: 122 ALSPDGKKLYVTNN--------------------GDKTVSVINTVTKAVI---------N 152
Query: 175 KYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD-----------TAHPVLV----G 219
I ++ D +Y +N+ I D + V
Sbjct: 153 TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT 212
Query: 220 QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS-QMFQLSLDGKRIYVSSS 276
+ ++ + + V++ID I R G ++ DGK++YV+ S
Sbjct: 213 KAYVTNVDKYFNTVSMIDTGTNK-------ITARIPVGPDPAGIAVTPDGKKVYVALS 263
Score = 33.2 bits (76), Expect = 0.088
Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 56/215 (26%)
Query: 14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ 73
VID + V G K + +S D + LY +N + +T ++
Sbjct: 100 VIDTTSNTVAGTV---KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI---NTVTKAVINT 153
Query: 74 IFLGGKIQS----------------DSGVTVIDDPELDKQPDPVIIKGRRFTGSS-QMFQ 116
+ +G + ++VID + ++
Sbjct: 154 VSVGRSPKGIAVTPDGTKVYVANFDSMSISVID-------TVTNSVIDTVKVEAAPSGIA 206
Query: 117 LSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKY 176
++ +G + YV++ + + + D +++I I
Sbjct: 207 VNPEGTKAYVTNV------DKYFNTVSMIDTG--TNKITARI------------------ 240
Query: 177 PARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211
P I ++ D + +Y + + D
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.12
Identities = 47/279 (16%), Positives = 86/279 (30%), Gaps = 107/279 (38%)
Query: 23 QGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQS 82
+ YP P+++ D SL+ + + P+L
Sbjct: 312 EAYPNTSLPPSILED---SLE----------NNE-------GVPSPMLS----------- 340
Query: 83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSL-DGKRIYV----SSSLFSPWDKE 137
++ + ++ + K + + ++SL +G + V SL+
Sbjct: 341 ---ISNLTQEQVQDY----VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG----- 388
Query: 138 IYPDLVKTDAAFGSD--EIMEFIQRN---EMRSMPLSS------LGSWKYPARSMVTDIL 186
+ L K A G D I F +R R +P++S L PA ++ L
Sbjct: 389 LNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLV----PASDLINKDL 443
Query: 187 ----ISLDDRYL----Y-TSNWMHGDIRQYDIRDTAHPVLVGQIF--------------- 222
+S + + + Y T + D+R + +V I
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDG--SDLRVLS--GSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 223 ------------LGG---KIQSDSGVTVIDDPELDKQPD 246
LG + + +GV VI LD PD
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 32.1 bits (73), Expect = 0.17
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 46/178 (25%)
Query: 40 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQPD 99
++ + + + T+N+ G I + I + + SG D E P
Sbjct: 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVI----EFKGSGP----DKERQTMPH 156
Query: 100 PVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQ 159
+++ DGK + DL G+D+I +F
Sbjct: 157 L------------HCVRITPDGKYLLA-------------DDL-------GTDQIHKFNI 184
Query: 160 RNEMRSMPLSSLGSWKYPARSMVTD------ILISLDDRYLYTSNWMHGDIRQYDIRD 211
+ + P V ++ + D ++ Y N + G + + D
Sbjct: 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242
Score = 31.3 bits (71), Expect = 0.38
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 20 KQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGD-IRQYDI-RDTAHPVLVGQIFLG 77
++Q DI +S D +YLY SN + D + + + VG G
Sbjct: 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG 305
Score = 28.6 bits (64), Expect = 2.8
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 187 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF 222
++ + + + T+N+ G I + I + +
Sbjct: 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVI 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 31.6 bits (72), Expect = 0.25
Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 56/217 (25%)
Query: 38 ILISLDDRYLYTSNWMHGDIRQYDIRDT--------------AHPVLV---GQIF----L 76
I ++++ ++ G++ + D H + + L
Sbjct: 89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 148
Query: 77 GG------KIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS-QMFQLSLDGKRIYVSSS 129
+ D + D E+ G+ + + + Y +
Sbjct: 149 KQDRICLFTVSDDGHLVAQDPAEVTTVE-----------GAGPRHMVFHPNEQYAYCVNE 197
Query: 130 LFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISL 189
L + + D+ + G+ +E +Q L + + DI I+
Sbjct: 198 L----NSSV--DVWELKDPHGN---IECVQT-------LDMMPE-NFSDTRWAADIHITP 240
Query: 190 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 226
D R+LY + I + + + +
Sbjct: 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET 277
Score = 31.2 bits (71), Expect = 0.39
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 2 YRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYD 61
+ G + + +D+ P DI I+ D R+LY + I +
Sbjct: 207 LKDPHGNIECVQTLDM-------MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259
Query: 62 IRDTAHPVLVGQIFLGGK 79
+ + +
Sbjct: 260 VSEDGSVLSKEGFQPTET 277
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 31.3 bits (71), Expect = 0.37
Identities = 44/304 (14%), Positives = 88/304 (28%), Gaps = 84/304 (27%)
Query: 14 VIDIPAKQVQG-YPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG 72
+D +V K I+ + L+ N ++ + D + + G
Sbjct: 73 RLDPVTLEVTQAIHNDLKPFGAT----INNTTQTLWFGNTVNSAVTAIDAKTGE---VKG 125
Query: 73 QIFLGGK---------------------------IQSDSGVTVIDDPELDKQPDPVIIKG 105
++ L + I +S + V+ D K + G
Sbjct: 126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV-DGGNIKLKTAIQNTG 184
Query: 106 RRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRS 165
+ TG L +GKR+Y +++ +L+ D A +
Sbjct: 185 KMSTG----LALDSEGKRLYTTNA---------DGELITIDTA----------DNKILSR 221
Query: 166 MPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA--HPVLVGQ--- 220
L G + +I + + + ++ ++ D R+ V +
Sbjct: 222 KKLLDDGKEHFF-----INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA 276
Query: 221 IFL---GGKI----QSDSGVTVIDDPELDKQPDPVIIKGRRFTGSS-QMFQLSLDGKRIY 272
+ + + V+VID + T + LS DGK +Y
Sbjct: 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYK-------VVKTFDTPTHPNSLALSADGKTLY 329
Query: 273 VSSS 276
VS
Sbjct: 330 VSVK 333
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase,
tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR
PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A*
2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A*
2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A*
2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Length = 361
Score = 30.2 bits (67), Expect = 0.68
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 21/92 (22%)
Query: 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ 244
+ +S D + +YT H I + D V V D +L +
Sbjct: 55 VQVSNDGKKIYTMTTYHERITRGKRSDV--------------------VEVWDADKLTFE 94
Query: 245 PDPVIIKGRRFTGSS-QMFQLSLDGKRIYVSS 275
+ + R + +F+ + DGK I + +
Sbjct: 95 KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126
Score = 27.2 bits (59), Expect = 6.5
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD 141
++S V V D G T + Q+S DGK+IY ++ + D
Sbjct: 29 TESRVHVYD-------YTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSD 81
Query: 142 LVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH 201
+V+ A E S+P + Y T D +++ N
Sbjct: 82 VVEVWDADKLTFEKEI-------SLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASP 129
Query: 202 GD 203
Sbjct: 130 AT 131
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 30.1 bits (67), Expect = 0.88
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 7/83 (8%)
Query: 7 GTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA 66
G D+ +++ + + LY D+ + +
Sbjct: 272 GVLNRLAKYDLKQRKLIKAA---NLDHTYYCVAFDKKGDKLYLGGTF-NDLAVF---NPD 324
Query: 67 HPVLVGQIFLGGKIQSDSGVTVI 89
V I L G S + V
Sbjct: 325 TLEKVKNIKLPGGDMSTTTPQVF 347
Score = 27.0 bits (59), Expect = 8.0
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 28/106 (26%)
Query: 171 LGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD 230
S P + +++ D+R Y N +GDI D+ DT
Sbjct: 34 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL-DTCKNT-------------- 78
Query: 231 SGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS 276
+ + F +S DGK +Y + +
Sbjct: 79 -FHANLSSVPGEVGRSM------------YSFAISPDGKEVYATVN 111
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250,
UDP, putative UDP-glucose pyrophosphorylase; HET: UPG
U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4
c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Length = 469
Score = 29.7 bits (66), Expect = 1.1
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 21/167 (12%)
Query: 96 KQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIM 155
+ +++ G+ + + + V S F P LV++D
Sbjct: 323 EVDGVKVLQLETAAGA--AIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDL-------- 372
Query: 156 EFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHP 215
+ + + AR+ ++ I L + + ++ I +
Sbjct: 373 -YTLVDGFVTRN---------KARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSL 422
Query: 216 VLVGQIFLGGKIQSDSGVTVIDDPELDKQ-PDPVIIKGRRFTGSSQM 261
+ G ++ G I VTV + + PD +++ + G +
Sbjct: 423 KVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA
binding protein, KH domain, KSRP, posttranscriptional
regulation, mRNA decay; NMR {Homo sapiens}
Length = 164
Score = 29.0 bits (65), Expect = 1.1
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 177 PARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ-IFLGG----KIQSDS 231
A MV DIL D N I VG I G KIQ+D+
Sbjct: 62 QACEMVMDILRERDQGGFGDRNEYGSR-IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 120
Query: 232 GVTVIDDPELDKQPDPVI-IKG 252
GV + + P+ + I G
Sbjct: 121 GVRIQFKQDDGTGPEKIAHIMG 142
Score = 27.1 bits (60), Expect = 5.5
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 22 VQGYPGG-DKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQ-IFLGG- 78
+ G P + MV DIL D N I VG I G
Sbjct: 53 IIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSR-IGGGIDVPVPRHSVGVVIGRSGE 111
Query: 79 ---KIQSDSGVTVIDDPELDKQPDPVI-IKG 105
KIQ+D+GV + + P+ + I G
Sbjct: 112 MIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG 142
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D*
3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D*
3svw_D* 3pxw_D* 3sle_D* 1mg2_A* 1mg3_A* 2mta_H* ...
Length = 386
Score = 29.1 bits (64), Expect = 1.9
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 22/140 (15%)
Query: 83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDL 142
+ VID + + G G ++ DG I +S++FS + D
Sbjct: 58 VTQQFVID-------GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 110
Query: 143 V-KTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH 201
V D + E+ P +G++ + ++ D + L +
Sbjct: 111 VEVFDPV-----TLLPTADIELPDAPRFLVGTYPWM-------TSLTPDGKTLLFYQF-- 156
Query: 202 GDIRQYDIRDTAHPVLVGQI 221
+ D +
Sbjct: 157 SPAPAVGVVDLEGKAFKRML 176
Score = 29.1 bits (64), Expect = 2.0
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 22/93 (23%)
Query: 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQ 244
+++ D ++ ++ + I + + D V V D L
Sbjct: 83 PVVADDGSFIAHASTVFSRIARGERTDY--------------------VEVFDPVTLLPT 122
Query: 245 PDPVIIKGRRFT--GSSQMFQLSLDGKRIYVSS 275
D + RF M L+ DGK +
Sbjct: 123 ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 155
Score = 26.8 bits (58), Expect = 8.9
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 230 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDL 289
+ VID + + G G ++ DG I +S++FS + D
Sbjct: 58 VTQQFVID-------GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 110
Query: 290 V 290
V
Sbjct: 111 V 111
>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre,
3'-nucleotidase, nucleic acids, mononucleotid cytosol
membrane associated; HET: NAG BMA MAN BTB; 2.16A
{Solanum lycopersicum}
Length = 277
Score = 28.8 bits (63), Expect = 2.1
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 127 SSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDIL 186
S+L WD+EI K A + + E I+ N + L SW+
Sbjct: 152 KSNLHHVWDREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGNVFSCVNK 211
Query: 187 ISLDDRYLYTS----NWMHGDIRQYDIRDTAHPVLVGQIFLGG 225
+ + + G+ D ++ P+++ ++ GG
Sbjct: 212 FATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMKRVAQGG 254
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer,
seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora
crassa} SCOP: b.69.10.1
Length = 365
Score = 28.7 bits (64), Expect = 2.2
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 17 IPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSN 51
IP P K ++ +Y++ S+
Sbjct: 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273
Score = 28.0 bits (62), Expect = 3.8
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 184 DILISLDDRYLYTSN 198
++ +Y++ S+
Sbjct: 259 VCALTFSGKYMFASS 273
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 28.5 bits (62), Expect = 2.6
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 22/144 (15%)
Query: 83 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDL 142
+ VID I G G + DG +S++F + D
Sbjct: 98 ITQQFVID-------GSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDY 150
Query: 143 V-KTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH 201
V D I E+ P +G++++ ++ D++ L +
Sbjct: 151 VEVFDPV-----TFLPIADIELPDAPRFLVGTYQWM-------NALTPDNKNLLFYQFSP 198
Query: 202 GDIRQYDIRDTAHPVLVGQIFLGG 225
+ D + +
Sbjct: 199 APAV--GVVDLEGKTFDRMLDVPD 220
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 22/94 (23%)
Query: 184 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDK 243
+ + D + ++ + I + D V V D
Sbjct: 122 HPVAAEDGSFFAQASTVFERIARGKRTDY--------------------VEVFDPVTFLP 161
Query: 244 QPDPVIIKGRRF--TGSSQMFQLSLDGKRIYVSS 275
D + RF M L+ D K +
Sbjct: 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ 195
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 230 DSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDL 289
+ VID I G G + DG +S++F + D
Sbjct: 98 ITQQFVID-------GSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDY 150
Query: 290 V 290
V
Sbjct: 151 V 151
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 28.6 bits (63), Expect = 2.9
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 38 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 78
I IS D +Y+Y + + I Y+ + +
Sbjct: 226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT 266
Score = 28.6 bits (63), Expect = 2.9
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 185 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225
I IS D +Y+Y + + I Y+ + +
Sbjct: 226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT 266
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET:
TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Length = 368
Score = 27.8 bits (61), Expect = 4.3
Identities = 15/114 (13%), Positives = 25/114 (21%), Gaps = 29/114 (25%)
Query: 46 YLYTSNWMHGDIRQYDIRDTAHPVLVGQI---FLGGKIQSDSG----------------- 85
++ + G + + V +G FL + SG
Sbjct: 35 HITLPAYFAGTTENW-VSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGK 93
Query: 86 ----VTVIDDPELDKQPDPVIIKGRRF--TGSSQMFQLSLDGKRIYVSSSLFSP 133
V V D D + RF + + LF
Sbjct: 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLF--FLFGS 145
Score = 27.8 bits (61), Expect = 4.3
Identities = 15/114 (13%), Positives = 25/114 (21%), Gaps = 29/114 (25%)
Query: 193 YLYTSNWMHGDIRQYDIRDTAHPVLVGQI---FLGGKIQSDSG----------------- 232
++ + G + + V +G FL + SG
Sbjct: 35 HITLPAYFAGTTENW-VSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGK 93
Query: 233 ----VTVIDDPELDKQPDPVIIKGRRF--TGSSQMFQLSLDGKRIYVSSSLFSP 280
V V D D + RF + + LF
Sbjct: 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLF--FLFGS 145
>2mad_H Methylamine dehydrogenase (heavy subunit);
oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A
{Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H*
1maf_H*
Length = 373
Score = 27.9 bits (61), Expect = 4.6
Identities = 17/152 (11%), Positives = 32/152 (21%), Gaps = 20/152 (13%)
Query: 74 IFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP 133
I L + V+D I G G + G ++S+ FS
Sbjct: 37 INLPAHHSAIIQQWVLD-------AGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSR 89
Query: 134 WDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRY 193
K D V+ I + + R + ++
Sbjct: 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-----------VGPYSWMNANTPNNAD 138
Query: 194 LYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 225
L + + +
Sbjct: 139 LLFFQF--AAGPAVGLVVQGGSSDDQLLSSPT 168
Score = 27.5 bits (60), Expect = 6.1
Identities = 9/94 (9%), Positives = 19/94 (20%), Gaps = 22/94 (23%)
Query: 184 DILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDK 243
+ + + ++ I + D V V D
Sbjct: 70 NPVAAHSGSEFALASTSFSRIAKGKRTDY--------------------VEVFDPVTFLP 109
Query: 244 QPDPVIIKGRRFTGSS--QMFQLSLDGKRIYVSS 275
D + RF M + + +
Sbjct: 110 IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ 143
Score = 26.8 bits (58), Expect = 9.5
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 221 IFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSP 280
I L + V+D I G G + G ++S+ FS
Sbjct: 37 INLPAHHSAIIQQWVLD-------AGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSR 89
Query: 281 WDKEIYPDLV 290
K D V
Sbjct: 90 IAKGKRTDYV 99
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 27.5 bits (61), Expect = 5.8
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 26/104 (25%)
Query: 175 KYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL-GGKIQSDSGV 233
P + L+ L D L G G + L G +
Sbjct: 139 AIPELREAEEHLLVLKDLAL------QGGRPAPHTPMDWMNGKEGDLVLVNGAL------ 186
Query: 234 TVIDDPELDKQPDPVIIKGRRF----TGSSQMFQLSLDGKRIYV 273
P L Q + R +++ ++L+L +Y+
Sbjct: 187 ----RPTLVAQKATL-----RLRLLNASNARYYRLALQDHPLYL 221
Score = 27.1 bits (60), Expect = 7.3
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 26/97 (26%)
Query: 35 VTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL-GGKIQSDSGVTVIDDPE 93
+ L+ L D L G G + L G + P
Sbjct: 146 AEEHLLVLKDLAL------QGGRPAPHTPMDWMNGKEGDLVLVNGAL----------RPT 189
Query: 94 LDKQPDPVIIKGRRF----TGSSQMFQLSLDGKRIYV 126
L Q + R +++ ++L+L +Y+
Sbjct: 190 LVAQKATL-----RLRLLNASNARYYRLALQDHPLYL 221
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 27.0 bits (59), Expect = 8.2
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 12 DKVI---DIPAKQVQGYP--GGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA 66
DK + D+ I I+ DD + ++ GD+ DI
Sbjct: 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIP 182
Query: 67 HPVLVGQIFLG 77
+ LG
Sbjct: 183 EEKFTQEPILG 193
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 25.5 bits (56), Expect = 9.2
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 59 QYDIRDTAHPVLVGQIFLGG----KIQSDSGVTVIDDPELDKQPDPVIIKGRR 107
+ H ++G G KI + V + P+ V + G
Sbjct: 20 DVPLDHRVHARIIGA---RGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLP 69
Score = 25.5 bits (56), Expect = 9.2
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 206 QYDIRDTAHPVLVGQIFLGG----KIQSDSGVTVIDDPELDKQPDPVIIKGRR 254
+ H ++G G KI + V + P+ V + G
Sbjct: 20 DVPLDHRVHARIIGA---RGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLP 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.417
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,813,082
Number of extensions: 300600
Number of successful extensions: 811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 85
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)