RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11412
(290 letters)
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 31.6 bits (71), Expect = 0.11
Identities = 29/208 (13%), Positives = 65/208 (31%), Gaps = 24/208 (11%)
Query: 38 ILISLDDRYLYTSNWM---HGDIRQYDIRDTAHPVLVGQIFLGGKIQSD---SGVTVIDD 91
IS +Y ++ G I D+ + V +I S G++ D
Sbjct: 48 AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 107
Query: 92 PELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSS-----LFSPWDKEIYPD--LVK 144
D +++ + + ++F+ + K + + L S D
Sbjct: 108 D--DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYA 165
Query: 145 TDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTD-------ILISLDDRYLYTS 197
T+ + D ++ + + S + + +V + I IS D +Y+Y +
Sbjct: 166 TNDHYFIDPYLKSWEM--HLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA 223
Query: 198 NWMHGDIRQYDIRDTAHPVLVGQIFLGG 225
+ I Y+ + +
Sbjct: 224 ELLAHKIHVYEKHANWTLTPLRVLSFDT 251
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 30.9 bits (69), Expect = 0.18
Identities = 33/219 (15%), Positives = 57/219 (26%), Gaps = 21/219 (9%)
Query: 30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQ-------- 81
V +S RYL+ G + D+ P V +I +G + +
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGR-DGKVNMIDL-WMKEPTTVAEIKIGSEARSIETSKME 116
Query: 82 SDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPD 141
I P VI+ G G P I
Sbjct: 117 GWEDKYAIAGAYWP--PQYVIMDGETLEPKKIQST---RGMTYDEQEYHPEPRVAAILAS 171
Query: 142 LVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMH 201
+ + E + + + L++L + + A + D + RY T+
Sbjct: 172 HYRPEFIVNVKETGKILLVD---YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR 228
Query: 202 GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPE 240
+ D + LV GG+ P
Sbjct: 229 NKLVVIDTK---EGKLVAIEDTGGQTPHPGRGANFVHPT 264
Score = 26.7 bits (58), Expect = 3.6
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 82 SDSG-VTVIDDPELDKQPDPVIIKGRRFTGSS-QMFQLSLDGKRIYVSSSLFSPWDKEIY 139
D+G + +ID IK TG + + +LS G+ ++V D ++
Sbjct: 39 RDAGQIALID-------GSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-----RDGKVN 86
Query: 140 PDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNW 199
+ EI ARS+ T + +D+Y +
Sbjct: 87 MIDLWMKEPTTVAEIKIGS------------------EARSIETSKMEGWEDKYAIAGAY 128
Query: 200 MHGDIRQYD 208
D
Sbjct: 129 WPPQYVIMD 137
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 30.2 bits (67), Expect = 0.25
Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 31/190 (16%)
Query: 33 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 92
+ + YLY I +Y I + + +I
Sbjct: 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT----------HMPVYTHHSFPLIPPG 242
Query: 93 ELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSD 152
D+ P+ + + + L+ GK ++ S + +L A F
Sbjct: 243 IPDRDPETG-----KGLYRADVCALTFSGKYMFAS-------SRANKFELQGYIAGFKLR 290
Query: 153 EIMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD- 211
+ ++ + P + G + ++ D ++ ++ G + Y +D
Sbjct: 291 DCGSIEKQLFLSPTP--TSGGH---SNAVSPC---PWSDEWMAITDDQEGWLEIYRWKDE 342
Query: 212 TAHPVLVGQI 221
H V +I
Sbjct: 343 FLHRVARVRI 352
Score = 26.7 bits (58), Expect = 3.8
Identities = 18/198 (9%), Positives = 59/198 (29%), Gaps = 41/198 (20%)
Query: 110 GSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDEIMEFIQRNEMRSMPLS 169
G + + + I++ ++ P+ P K + E + +
Sbjct: 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANP-FYKFAGYGNVFSVSETGKLEK------- 134
Query: 170 SLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK--- 226
++ +++Y + + ++ + YLY+++ + + + LVG +
Sbjct: 135 NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194
Query: 227 ----------------IQSDSGVTVID--------------DPELDKQPDPVIIKGRRFT 256
+++ + + P + + +
Sbjct: 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254
Query: 257 GSSQMFQLSLDGKRIYVS 274
+ + L+ GK ++ S
Sbjct: 255 YRADVCALTFSGKYMFAS 272
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
chain {Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 30.2 bits (66), Expect = 0.27
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIR 63
VID V +++ R Y + + + D+
Sbjct: 14 VVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 30.2 bits (66), Expect = 0.27
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 13 KVIDIPAKQVQG-YPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDI 62
VID+ + +V P G +IS D +Y +N D+ D
Sbjct: 15 SVIDVTSNKVTATIPVGSNP----MGAVISPDGTKVYVANAHSNDVSIIDT 61
Score = 28.3 bits (61), Expect = 1.1
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 176 YPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRD 211
P I ++ D + +Y + + D
Sbjct: 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Score = 27.9 bits (60), Expect = 1.3
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 174 WKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDI 209
P S +IS D +Y +N D+ D
Sbjct: 26 ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Score = 27.9 bits (60), Expect = 1.5
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 35 VTDILISLDDRYLYTSNWMHGDIRQYDIRD 64
I ++ D + +Y + + D
Sbjct: 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 29.8 bits (65), Expect = 0.38
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 30 KVPAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGG 78
VP V +++S D RYLY + Y I D + L G
Sbjct: 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83
Score = 28.6 bits (62), Expect = 0.94
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 1 FYRQSDGTYKADKVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQY 60
R + D +G+ + P + +YL + I Y
Sbjct: 247 CDRTASLITVFSVSEDGSVLSKEGFQPTETQP---RGFNVDHSGKYLIAAGQKSHHISVY 303
Query: 61 DI-RDTAHPVLVGQIFLGG 78
+I + G+ +G
Sbjct: 304 EIVGEQGLLHEKGRYAVGQ 322
Score = 28.3 bits (61), Expect = 1.0
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 177 PARSMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGG 225
P + + +YL + I Y+I + G+ +G
Sbjct: 273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQ 322
Score = 28.3 bits (61), Expect = 1.3
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 182 VTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGG 225
V +++S D RYLY + Y I D + L G
Sbjct: 39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83
>d1uwfa1 b.2.3.2 (A:1-158) Mannose-specific adhesin FimH
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 28.6 bits (64), Expect = 0.59
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 105 GRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFG 150
+++GSS F + + R+ +S PW +Y L +A G
Sbjct: 74 TVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALY--LTPVSSAGG 117
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 27.6 bits (60), Expect = 1.8
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 14 VIDIPAKQVQGYPGGDKVPAMVTDILISLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVG 72
+ Q G I+ + D Y ++ + YD
Sbjct: 298 SVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ---DQS 351
Query: 73 QIFLGGKIQSDSGVTVIDD 91
+ L + ++V ++
Sbjct: 352 SVELD---KGPESLSVQNE 367
Score = 27.3 bits (59), Expect = 2.2
Identities = 6/49 (12%), Positives = 9/49 (18%), Gaps = 2/49 (4%)
Query: 83 DSGVTVIDDPELDKQPDPVIIKGRRF--TGSSQMFQLSLDGKRIYVSSS 129
V V D D + RF + +
Sbjct: 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 27.6 bits (61), Expect = 1.9
Identities = 36/287 (12%), Positives = 70/287 (24%), Gaps = 67/287 (23%)
Query: 42 LDDRYLYTSNWMHGDIRQYDI---RDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDKQP 98
LD+ Y + S G++R + R+ + G ++ ++
Sbjct: 8 LDEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGG------- 60
Query: 99 DPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL---------------------------- 130
D + G M DGK ++++
Sbjct: 61 DQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHG 120
Query: 131 --FSPWDKEIY--------PDLVKTDAAFGSDEIMEFIQRNEMRSMPLSSLGSWKYPARS 180
K Y F D + +M + +W+
Sbjct: 121 LRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV----AWQVIVDG 176
Query: 181 MVTDILISLDDRYLYTSNWMHGDIRQYD-----IRDTAHPVLVGQIFL-----GGKIQSD 230
+ + +Y ++ + RD V +I K D
Sbjct: 177 NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD 236
Query: 231 SGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSL 277
S V V+D + + + + S DGK + L
Sbjct: 237 SKVPVVDGRGESEFTRYIPVP-----KNPHGLNTSPDGKYFIANGKL 278
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 27.0 bits (59), Expect = 2.8
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 172 GSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV 218
W T L+ + +LY S+ D+ +D TA +
Sbjct: 158 VGWYTGRTGPNTRRLVMEEGGFLYDSDTYDDDLPYWDPASTAEKPHL 204
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 25.5 bits (56), Expect = 2.9
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 59 QYDIRDTAHPVLVGQIFLGGK----IQSDSGVTVIDDPELDKQPDPVIIKG 105
+ H ++G GK I + V + P+ V + G
Sbjct: 13 DVPLDHRVHARIIGA---RGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTG 60
Score = 25.5 bits (56), Expect = 2.9
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 206 QYDIRDTAHPVLVGQIFLGGK----IQSDSGVTVIDDPELDKQPDPVIIKG 252
+ H ++G GK I + V + P+ V + G
Sbjct: 13 DVPLDHRVHARIIGA---RGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTG 60
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 27.0 bits (59), Expect = 3.3
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 94 LDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFSPWDKEIYPDLVKTDAAFGSDE 153
LD+ + G + + + +R WD Y + V+
Sbjct: 272 LDELAQKLKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQN 331
Query: 154 IMEFIQRNEMRSMPLSSLGSWKYPARSMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA 213
++ + + + ++ + L + ++ H D+R Y RD A
Sbjct: 332 LL----------KEYFPVQVVTHGLLGIYQEL-LGLAFHHEEGASAWHEDVRLYTARDAA 380
Query: 214 HPVLVGQIFLG 224
+VG+ +L
Sbjct: 381 SGEVVGKFYLD 391
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 26.5 bits (57), Expect = 4.7
Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 19/206 (9%)
Query: 13 KVIDIPAKQVQGYPGGDKVPAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG 72
++D +K++ V +S RYL I D P V
Sbjct: 45 ALVDGDSKKIVKVI---DTGYAVHISRMSASGRYLLVIGR-DARIDMID-LWAKEPTKVA 99
Query: 73 QIFLGGKIQSDSGVTVIDDPELDKQPDPVIIKGRRFTGSSQMFQLSLDGKRIYVSSSLFS 132
+I KI ++ K + + + + S+
Sbjct: 100 EI----KIGIEARSVESSK---FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 133 PWDKEIYPDLVKTDAAFGSDEIMEFIQRNE-------MRSMPLSSLGSWKYPARSMVTDI 185
D + Y + A S E EFI + + + +L A + D
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212
Query: 186 LISLDDRYLYTSNWMHGDIRQYDIRD 211
RY T+ + D +D
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKD 238
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase
{Lactobacillus leichmannii [TaxId: 28039]}
Length = 156
Score = 25.0 bits (54), Expect = 9.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 122 KRIYVSSSLFSPWDKEIYPDLVK 144
K IY + F+ + Y + ++
Sbjct: 3 KTIYFGAGWFTDRQNKAYKEAME 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.417
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,192,899
Number of extensions: 57801
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 44
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)