BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11415
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 152 bits (385), Expect = 3e-38, Method: Composition-based stats.
Identities = 65/70 (92%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 152 bits (384), Expect = 4e-38, Method: Composition-based stats.
Identities = 65/70 (92%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 152 bits (383), Expect = 5e-38, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 151 bits (381), Expect = 9e-38, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 151 bits (381), Expect = 9e-38, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 151 bits (381), Expect = 9e-38, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 151 bits (381), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 151 bits (381), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 151 bits (381), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 151 bits (381), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 151 bits (381), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61 VVPGGDLRHI 70
VVPGGDL +
Sbjct: 362 VVPGGDLAKV 371
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 110 bits (276), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPR GKYMA C+LYRGDVV +DV A+ +K K+T+Q VDWCPTGFK+GI Y+PPT
Sbjct: 303 MVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPT 362
Query: 61 VVPGGDL 67
P L
Sbjct: 363 ATPNSQL 369
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 55.5 bits (132), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
M CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGI 54
M DPR+G+Y+ +RG V K+V + +++K + FV+W P + +
Sbjct: 300 MAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV 353
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 4 CDPRHGKYMACCMLYRGDVVPKDV-NSAIATIKTKRTIQFVDWCPTGFKVGINYQP 58
C P G++++ +LYRG + K + ++A+A ++ K + + W PT FK+G QP
Sbjct: 309 CSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVEQP 362
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 5 DPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPT--GFKVGINYQPP 59
D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G P
Sbjct: 304 DWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETAP 358
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 11 YMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P
Sbjct: 317 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSP 365
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 11 YMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P
Sbjct: 317 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSP 365
>pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 233
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 26 DVNSAIATIKTKRTIQFVDWCPTGFKVGI-------NYQPPTVVPGGDLRHI 70
D+N AIA +K T +FV+ +GI N + TV+P G R +
Sbjct: 21 DINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSV 72
>pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|3KCR|5 Chain 5, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 3kc4
pdb|2WWQ|5 Chain 5, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3IZT|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|5 Chain 5, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3J0T|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|C Chain C, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
Length = 234
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 26 DVNSAIATIKTKRTIQFVDWCPTGFKVGI-------NYQPPTVVPGGDLRHI 70
D+N AIA +K T +FV+ +GI N + TV+P G R +
Sbjct: 22 DINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSV 73
>pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|2 Chain 2, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 222
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 26 DVNSAIATIKTKRTIQFVDWCPTGFKVGI-------NYQPPTVVPGGDLRHI 70
D+N AIA +K T +FV+ +GI N + TV+P G R +
Sbjct: 17 DINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSV 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.485
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,322,157
Number of Sequences: 62578
Number of extensions: 73272
Number of successful extensions: 182
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 29
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)