Query psy11415
Match_columns 70
No_of_seqs 100 out of 727
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:51:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03953 Tubulin_C: Tubulin C- 99.9 4.3E-24 9.3E-29 122.0 4.8 65 1-65 40-104 (126)
2 COG5023 Tubulin [Cytoskeleton] 99.8 4.4E-20 9.6E-25 120.0 4.9 60 1-60 300-359 (443)
3 PTZ00335 tubulin alpha chain; 99.6 4.5E-15 9.8E-20 99.2 5.5 64 1-64 302-365 (448)
4 PLN00221 tubulin alpha chain; 99.6 6.3E-15 1.4E-19 98.5 5.3 65 1-65 302-366 (450)
5 cd02188 gamma_tubulin Gamma-tu 99.5 9.9E-15 2.2E-19 97.2 5.7 61 1-61 302-363 (431)
6 PTZ00010 tubulin beta chain; P 99.5 7.3E-15 1.6E-19 98.1 4.8 66 1-66 300-365 (445)
7 cd02186 alpha_tubulin The tubu 99.5 1.1E-14 2.4E-19 97.0 5.4 64 1-64 301-364 (434)
8 PLN00222 tubulin gamma chain; 99.5 1.4E-14 3E-19 97.0 4.8 60 2-61 305-369 (454)
9 cd02187 beta_tubulin The tubul 99.5 2.5E-14 5.4E-19 95.1 4.8 65 2-66 300-364 (425)
10 PLN00220 tubulin beta chain; P 99.5 3.9E-14 8.4E-19 94.7 5.1 65 2-66 301-365 (447)
11 PTZ00387 epsilon tubulin; Prov 99.5 3.1E-14 6.6E-19 95.6 4.5 64 1-66 327-390 (465)
12 cd02190 epsilon_tubulin The tu 99.5 7.1E-14 1.5E-18 91.8 4.5 63 1-65 256-318 (379)
13 KOG1375|consensus 99.2 4.3E-12 9.3E-17 82.6 2.9 56 10-67 235-290 (369)
14 cd06059 Tubulin The tubulin su 99.2 5.6E-11 1.2E-15 78.1 4.9 62 2-65 260-322 (382)
15 KOG1376|consensus 98.9 1.2E-09 2.5E-14 71.6 2.2 44 1-44 294-337 (407)
16 cd02189 delta_tubulin The tubu 98.8 4E-09 8.7E-14 70.8 3.5 53 4-61 328-380 (446)
17 cd00286 Tubulin_FtsZ Tubulin/F 98.8 1.4E-08 3E-13 65.6 5.0 56 3-60 260-315 (328)
18 KOG1374|consensus 98.7 1.3E-08 2.8E-13 67.2 2.6 58 9-66 316-373 (448)
19 smart00865 Tubulin_C Tubulin/F 96.5 0.0015 3.2E-08 35.9 1.4 38 11-52 58-97 (120)
20 PHA00692 hypothetical protein 62.7 3.5 7.7E-05 20.8 0.6 26 32-58 24-49 (74)
21 PRK02047 hypothetical protein; 61.7 6.4 0.00014 21.2 1.5 31 6-37 54-84 (91)
22 PF04359 DUF493: Protein of un 61.1 6.1 0.00013 20.7 1.4 32 5-37 47-78 (85)
23 PF14475 Mso1_Sec1_bdg: Sec1-b 58.7 16 0.00035 17.0 2.4 25 22-46 17-41 (41)
24 COG2921 Uncharacterized conser 54.9 10 0.00022 20.6 1.6 29 6-35 53-81 (90)
25 PRK00341 hypothetical protein; 52.4 11 0.00025 20.3 1.5 31 5-36 53-83 (91)
26 PRK00907 hypothetical protein; 50.0 13 0.00028 20.2 1.5 30 6-36 55-84 (92)
27 PRK04998 hypothetical protein; 46.8 15 0.00033 19.5 1.5 31 6-37 51-81 (88)
28 PF11020 DUF2610: Domain of un 42.7 27 0.00059 18.7 2.0 28 17-44 40-70 (82)
29 PF13132 DUF3950: Domain of un 40.4 22 0.00047 15.4 1.1 21 26-49 4-24 (30)
30 PF13200 DUF4015: Putative gly 37.2 37 0.0008 22.5 2.4 28 22-49 287-314 (316)
31 smart00810 Alpha-amyl_C2 Alpha 35.6 31 0.00066 17.4 1.5 14 42-55 39-52 (61)
32 PF15601 Imm42: Immunity prote 34.2 89 0.0019 18.2 3.4 42 16-61 44-91 (134)
33 PF11251 DUF3050: Protein of u 33.9 46 0.001 21.3 2.3 25 26-50 30-54 (232)
34 PF14394 DUF4423: Domain of un 32.7 92 0.002 18.6 3.4 40 10-52 41-81 (171)
35 PF10309 DUF2414: Protein of u 31.9 48 0.001 16.7 1.8 32 17-48 9-42 (62)
36 PF07592 DDE_Tnp_ISAZ013: Rhod 31.4 35 0.00075 22.7 1.6 22 47-68 212-233 (311)
37 PTZ00152 cofilin/actin-depolym 30.9 17 0.00036 20.7 0.0 14 39-52 72-85 (122)
38 PTZ00242 protein tyrosine phos 28.8 32 0.0007 20.3 1.0 28 7-34 111-138 (166)
39 PF06738 DUF1212: Protein of u 28.6 59 0.0013 19.3 2.2 28 17-45 77-104 (193)
40 KOG0268|consensus 27.7 14 0.00029 25.4 -0.8 50 4-54 195-246 (433)
41 PF12401 DUF3662: Protein of u 27.0 1.2E+02 0.0027 16.9 3.9 40 16-55 18-60 (116)
42 PF08487 VIT: Vault protein in 26.7 1.1E+02 0.0023 16.9 2.8 42 18-60 61-107 (118)
43 COG4493 Uncharacterized protei 26.0 1.3E+02 0.0027 18.8 3.2 63 4-66 65-148 (209)
44 COG0327 Uncharacterized conser 25.7 71 0.0015 20.3 2.2 29 24-54 3-31 (250)
45 PF06366 FlhE: Flagellar prote 25.6 60 0.0013 18.1 1.7 19 40-58 36-54 (106)
46 KOG0272|consensus 25.2 46 0.001 23.2 1.3 18 39-56 347-364 (459)
47 PF12161 HsdM_N: HsdM N-termin 24.3 79 0.0017 17.4 2.1 21 12-32 6-26 (137)
48 PF02922 CBM_48: Carbohydrate- 22.8 60 0.0013 16.3 1.3 18 38-55 11-28 (85)
49 PRK15387 E3 ubiquitin-protein 22.5 49 0.0011 24.7 1.2 31 16-46 665-697 (788)
50 PLN03216 actin depolymerizing 22.5 26 0.00057 20.2 -0.2 14 38-51 85-98 (141)
51 COG0801 FolK 7,8-dihydro-6-hyd 22.1 1.8E+02 0.004 17.4 3.4 47 8-54 51-98 (160)
52 KOG4497|consensus 21.6 52 0.0011 22.6 1.0 42 8-52 19-63 (447)
53 PF12616 DUF3775: Protein of u 21.3 1.4E+02 0.003 15.6 2.4 25 13-37 23-47 (75)
54 cd00013 ADF Actin depolymerisa 21.2 35 0.00075 18.9 0.2 14 39-52 78-91 (132)
55 KOG3363|consensus 20.4 55 0.0012 20.1 0.9 32 6-37 159-190 (196)
56 PF12841 YvrJ: YvrJ protein fa 20.3 59 0.0013 14.8 0.8 26 10-35 10-35 (38)
57 smart00653 eIF2B_5 domain pres 20.2 64 0.0014 18.0 1.1 20 15-34 57-76 (110)
58 PRK10799 metal-binding protein 20.2 1.1E+02 0.0024 19.2 2.3 27 25-53 4-30 (247)
59 COG2966 Uncharacterized conser 20.1 1.1E+02 0.0025 19.5 2.3 28 17-45 99-126 (250)
No 1
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=4.3e-24 Score=122.00 Aligned_cols=65 Identities=68% Similarity=1.210 Sum_probs=58.7
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 65 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~ 65 (70)
|+++|+++|+|||++++|||+++++||++++.+++++.+++|++|+|+|||+++|++||.+.+.+
T Consensus 40 m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~Fv~W~p~~~kv~~~~~~p~~~~~s 104 (126)
T PF03953_consen 40 MVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQFVDWIPTGFKVGICKVPPYGQPNS 104 (126)
T ss_dssp SSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTSB-SSSTTCEEEEEESS-STSTTTS
T ss_pred ccccccccchhhhhhhccccccccchhhhHHHhhhhccccceeeecCchhhcccccCCCcccCCC
Confidence 67899999999999999999999999999999999999999999999999999999999988877
No 2
>COG5023 Tubulin [Cytoskeleton]
Probab=99.80 E-value=4.4e-20 Score=120.05 Aligned_cols=60 Identities=63% Similarity=1.313 Sum_probs=58.3
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCc
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~ 60 (70)
|++|||+.|+|++++++|||+++++||.+++.++|+|+.++|++|+|++||+++|+.||.
T Consensus 300 mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~ 359 (443)
T COG5023 300 MVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS 359 (443)
T ss_pred eeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc
Confidence 688999999999999999999999999999999999999999999999999999999993
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.57 E-value=4.5e-15 Score=99.17 Aligned_cols=64 Identities=92% Similarity=1.657 Sum_probs=58.4
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 64 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~ 64 (70)
|++++|+.|+||++++++||+++..|+.+++.++++++.+.|++|+|+++++++|+++|...+.
T Consensus 302 ~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~ 365 (448)
T PTZ00335 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 (448)
T ss_pred eEecCCCccchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCC
Confidence 3467888999999999999999999999999999999999999999999999999999875543
No 4
>PLN00221 tubulin alpha chain; Provisional
Probab=99.55 E-value=6.3e-15 Score=98.54 Aligned_cols=65 Identities=91% Similarity=1.661 Sum_probs=58.8
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 65 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~ 65 (70)
|++++|+.|+||++++++||+++.+|+.+++.+++.++.+.|++|+|+++++++|+++|...+.+
T Consensus 302 l~~~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~ 366 (450)
T PLN00221 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366 (450)
T ss_pred eeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCc
Confidence 45678889999999999999999999999999999899999999999999999999998755543
No 5
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.55 E-value=9.9e-15 Score=97.18 Aligned_cols=61 Identities=26% Similarity=0.620 Sum_probs=56.5
Q ss_pred CccccC-CCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415 1 MVKCDP-RHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 61 (70)
Q Consensus 1 ~~~~~~-~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~ 61 (70)
|+.+++ +.|+|||+++++||+++++|+.+++.+++++..++|++|+|++|++++|+++|..
T Consensus 302 m~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~ 363 (431)
T cd02188 302 MVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYV 363 (431)
T ss_pred eeecCCCccchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCcc
Confidence 456788 8899999999999999999999999999998889999999999999999998864
No 6
>PTZ00010 tubulin beta chain; Provisional
Probab=99.54 E-value=7.3e-15 Score=98.11 Aligned_cols=66 Identities=30% Similarity=0.660 Sum_probs=59.3
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 66 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~ 66 (70)
|+++||+.|+|||+++++||+++.+|+.+++.++++++.+.|++|+|++|++++|+++|...+.+.
T Consensus 300 ~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 365 (445)
T PTZ00010 300 MCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSV 365 (445)
T ss_pred EeecCCCcchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceE
Confidence 346788899999999999999999999999999999999999999999999999999987655443
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.54 E-value=1.1e-14 Score=97.00 Aligned_cols=64 Identities=95% Similarity=1.694 Sum_probs=58.5
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 64 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~ 64 (70)
|+.++++.|+||++++++||+++.+|+.+++.++++++.+.|++|+|+++++++|++||...+.
T Consensus 301 m~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~ 364 (434)
T cd02186 301 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 364 (434)
T ss_pred eeecCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCC
Confidence 4567889999999999999999999999999999989999999999999999999999875554
No 8
>PLN00222 tubulin gamma chain; Provisional
Probab=99.52 E-value=1.4e-14 Score=97.01 Aligned_cols=60 Identities=25% Similarity=0.609 Sum_probs=55.1
Q ss_pred ccccCCC-----CchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415 2 VKCDPRH-----GKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 61 (70)
Q Consensus 2 ~~~~~~~-----g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~ 61 (70)
+.++|+. |+|||+++++||+++++|+.+++.++++++.+.|++|+|+++++++|+++|..
T Consensus 305 ~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~ 369 (454)
T PLN00222 305 VSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYV 369 (454)
T ss_pred eecCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCC
Confidence 4567776 99999999999999999999999999998889999999999999999999864
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.50 E-value=2.5e-14 Score=95.08 Aligned_cols=65 Identities=31% Similarity=0.710 Sum_probs=58.5
Q ss_pred ccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415 2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 66 (70)
Q Consensus 2 ~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~ 66 (70)
+.++|+.|+||++++++||+++++|+.+++.++++++.+.|++|+|+++++++|+++|...+.+.
T Consensus 300 ~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 364 (425)
T cd02187 300 AACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSA 364 (425)
T ss_pred eccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeE
Confidence 45778899999999999999999999999999999999999999999999999999987555443
No 10
>PLN00220 tubulin beta chain; Provisional
Probab=99.49 E-value=3.9e-14 Score=94.65 Aligned_cols=65 Identities=28% Similarity=0.661 Sum_probs=58.6
Q ss_pred ccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415 2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 66 (70)
Q Consensus 2 ~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~ 66 (70)
+++++..|+||++++++||+++..|+.+++.+++.++.+.|++|+|++|++++|+++|...+.+.
T Consensus 301 ~~~~~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 365 (447)
T PLN00220 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAS 365 (447)
T ss_pred cccCCCCchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceee
Confidence 45678889999999999999999999999999988899999999999999999999987655443
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=99.49 E-value=3.1e-14 Score=95.60 Aligned_cols=64 Identities=31% Similarity=0.554 Sum_probs=57.1
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 66 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~ 66 (70)
|+.++|..|+|||+++++||+++..|+.+.+.+++++ +.|++|+|+++++++|+++|...+.+.
T Consensus 327 m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~--~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 327 MVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQ--LNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred eeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhcc--ccccccCCCceEEEeeccCCCCCceeE
Confidence 4567889999999999999999999999999999654 999999999999999999997766554
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.46 E-value=7.1e-14 Score=91.84 Aligned_cols=63 Identities=37% Similarity=0.812 Sum_probs=55.6
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 65 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~ 65 (70)
|+.++++.|+||++++++||++++.|+.+++.+++++ +.|++|+|+++++++|+++|...+.+
T Consensus 256 m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s 318 (379)
T cd02190 256 LIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYS 318 (379)
T ss_pred eeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCccee
Confidence 4457888999999999999999999999999999776 78999999999999999998655443
No 13
>KOG1375|consensus
Probab=99.24 E-value=4.3e-12 Score=82.58 Aligned_cols=56 Identities=23% Similarity=0.539 Sum_probs=52.8
Q ss_pred chhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCCC
Q psy11415 10 KYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 67 (70)
Q Consensus 10 ~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~l 67 (70)
.||+++.++|| +.+|+++++..+++|+..+|++|+|+++|+++|.+||.+.+++.+
T Consensus 235 dyLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glkms~t 290 (369)
T KOG1375|consen 235 DYLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLKMSST 290 (369)
T ss_pred hhhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcccccccc
Confidence 39999999999 999999999999999999999999999999999999998888773
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.16 E-value=5.6e-11 Score=78.12 Aligned_cols=62 Identities=39% Similarity=0.831 Sum_probs=53.4
Q ss_pred ccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCc-cccCC
Q psy11415 2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT-VVPGG 65 (70)
Q Consensus 2 ~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~-~~~~~ 65 (70)
+.++++.|+||++++++||+....++.+.+.+++.+..+. +|+|+++++++|+++|. ..+.+
T Consensus 260 ~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s 322 (382)
T cd06059 260 FSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKS 322 (382)
T ss_pred eecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCccee
Confidence 4567889999999999999999999999999998776555 89999999999999986 44433
No 15
>KOG1376|consensus
Probab=98.86 E-value=1.2e-09 Score=71.64 Aligned_cols=44 Identities=95% Similarity=1.566 Sum_probs=42.4
Q ss_pred CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccc
Q psy11415 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVD 44 (70)
Q Consensus 1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~ 44 (70)
|++|||+.|+|++++++|||++.++|+..++..++.++.++|++
T Consensus 294 mvkcDP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd 337 (407)
T KOG1376|consen 294 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD 337 (407)
T ss_pred ccccCCccchHHHHHHhccCCcCcccchHHHHhhhhccccccce
Confidence 68899999999999999999999999999999999999999987
No 16
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=98.81 E-value=4e-09 Score=70.78 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=45.6
Q ss_pred ccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415 4 CDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 61 (70)
Q Consensus 4 ~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~ 61 (70)
+++..++||++++++||+...+++.+.+ ++.+.|++|+|+++++++|+.+|..
T Consensus 328 ~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~ 380 (446)
T cd02189 328 KSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSF 380 (446)
T ss_pred cCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCc
Confidence 5678899999999999998888887543 3569999999999999999998863
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=98.77 E-value=1.4e-08 Score=65.60 Aligned_cols=56 Identities=41% Similarity=0.879 Sum_probs=49.6
Q ss_pred cccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCc
Q psy11415 3 KCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60 (70)
Q Consensus 3 ~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~ 60 (70)
.++++.++|+++++++||+.+.+++.+.+..++++..+. +|+|+++++++|..||.
T Consensus 260 ~~~~~~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~ 315 (328)
T cd00286 260 VCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPA 315 (328)
T ss_pred ccCCCccchHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCC
Confidence 356778999999999999999999999999998875555 89999999999998875
No 18
>KOG1374|consensus
Probab=98.68 E-value=1.3e-08 Score=67.22 Aligned_cols=58 Identities=21% Similarity=0.511 Sum_probs=53.6
Q ss_pred CchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415 9 GKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 66 (70)
Q Consensus 9 g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~ 66 (70)
.+|+++.++..|.+++.+|.+.+.++++++..+|++|.|.++++++.+.+|+..+..+
T Consensus 316 ~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~ 373 (448)
T KOG1374|consen 316 PCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHR 373 (448)
T ss_pred cchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccc
Confidence 3899999999999999999999999999999999999999999999999998776543
No 19
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=96.50 E-value=0.0015 Score=35.90 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=30.2
Q ss_pred hhhhhhhhcccCChHHHHHHHHHhhhhcc-ccccccCC-cceeE
Q psy11415 11 YMACCMLYRGDVVPKDVNSAIATIKTKRT-IQFVDWCP-TGFKV 52 (70)
Q Consensus 11 ~ls~~~~~rG~~~~~~i~~~i~~~~~~~~-~~f~~W~p-~~~kv 52 (70)
||++.. +++.+|+.+.+.+++++.. ..|+.|+| .++++
T Consensus 58 ~l~~~~----~~~~~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~ 97 (120)
T smart00865 58 NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEEL 97 (120)
T ss_pred EEEcCC----CCCHHHHHHHHHHHHHhcCCCceEEEccccCCcC
Confidence 555543 7899999999999988766 88999999 55554
No 20
>PHA00692 hypothetical protein
Probab=62.69 E-value=3.5 Score=20.78 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=20.2
Q ss_pred HHhhhhccccccccCCcceeEEEeccC
Q psy11415 32 ATIKTKRTIQFVDWCPTGFKVGINYQP 58 (70)
Q Consensus 32 ~~~~~~~~~~f~~W~p~~~kv~~~~~~ 58 (70)
.++.+.+..+|+++ |+||..|-|.++
T Consensus 24 arfhedrthyfvey-ppgfrfggcrvs 49 (74)
T PHA00692 24 ARFHEDRTHYFVEY-PPGFRFGGCRVS 49 (74)
T ss_pred hhhcccceeEeEec-CCCccccceeec
Confidence 34555677889997 778999999876
No 21
>PRK02047 hypothetical protein; Provisional
Probab=61.75 E-value=6.4 Score=21.23 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCCCchhhhhhhhcccCChHHHHHHHHHhhhh
Q psy11415 6 PRHGKYMACCMLYRGDVVPKDVNSAIATIKTK 37 (70)
Q Consensus 6 ~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~ 37 (70)
+++|+|+|..+.++- .+..++.+....++..
T Consensus 54 Ss~GkY~Svtv~v~v-~s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 54 SSGGNYTGLTITVRA-TSREQLDNIYRALTGH 84 (91)
T ss_pred CCCCeEEEEEEEEEE-CCHHHHHHHHHHHhhC
Confidence 567999998876554 3666677776666553
No 22
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=61.14 E-value=6.1 Score=20.75 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=22.2
Q ss_pred cCCCCchhhhhhhhcccCChHHHHHHHHHhhhh
Q psy11415 5 DPRHGKYMACCMLYRGDVVPKDVNSAIATIKTK 37 (70)
Q Consensus 5 ~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~ 37 (70)
.++.|+|.|..+..+- .+..++.+....++..
T Consensus 47 ~S~~GkY~Svtv~v~v-~s~eq~~~iy~~L~~~ 78 (85)
T PF04359_consen 47 PSSKGKYVSVTVSVTV-ESAEQVDAIYRELKAH 78 (85)
T ss_dssp CSTTSSEEEEEEEEEE-SSHHHHHHHHHHHTTS
T ss_pred cCCCCeEEEEEEEEEE-CCHHHHHHHHHHhccC
Confidence 3567999988874443 3667777777777654
No 23
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=58.67 E-value=16 Score=16.99 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHhhhhccccccccC
Q psy11415 22 VVPKDVNSAIATIKTKRTIQFVDWC 46 (70)
Q Consensus 22 ~~~~~i~~~i~~~~~~~~~~f~~W~ 46 (70)
.+..-|.+.+.+-...+...|++|.
T Consensus 17 eddT~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 17 EDDTHVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred cchhHHHHHHHHHHHHcCCCCCCcC
Confidence 3455688888877777788899983
No 24
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=10 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=19.4
Q ss_pred CCCCchhhhhhhhcccCChHHHHHHHHHhh
Q psy11415 6 PRHGKYMACCMLYRGDVVPKDVNSAIATIK 35 (70)
Q Consensus 6 ~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~ 35 (70)
++.|+|+++.+.+|.. +..+++.....|.
T Consensus 53 SSkGnY~svsI~i~A~-~~EQ~e~ly~eL~ 81 (90)
T COG2921 53 SSKGNYLSVSITIRAT-NIEQVEALYRELR 81 (90)
T ss_pred CCCCceEEEEEEEEEC-CHHHHHHHHHHHh
Confidence 4669999999988873 4455555544443
No 25
>PRK00341 hypothetical protein; Provisional
Probab=52.36 E-value=11 Score=20.28 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=21.0
Q ss_pred cCCCCchhhhhhhhcccCChHHHHHHHHHhhh
Q psy11415 5 DPRHGKYMACCMLYRGDVVPKDVNSAIATIKT 36 (70)
Q Consensus 5 ~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~ 36 (70)
.++.|+|+|..+.++- .+..++......|+.
T Consensus 53 ~Ss~GkY~S~tv~i~~-~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 53 QSSNGKYTTVQLHIVA-TDEDQLQDINSALRA 83 (91)
T ss_pred cCCCCEEEEEEEEEEE-CCHHHHHHHHHHHhh
Confidence 3567999998876555 356666666666654
No 26
>PRK00907 hypothetical protein; Provisional
Probab=50.04 E-value=13 Score=20.24 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=19.9
Q ss_pred CCCCchhhhhhhhcccCChHHHHHHHHHhhh
Q psy11415 6 PRHGKYMACCMLYRGDVVPKDVNSAIATIKT 36 (70)
Q Consensus 6 ~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~ 36 (70)
+++|+|+|..+.++-. +..+++.....|+.
T Consensus 55 Ss~GkY~Svtv~i~at-s~eQld~iY~~L~~ 84 (92)
T PRK00907 55 SSSGKYVSVRIGFRAE-SREQYDAAHQALRD 84 (92)
T ss_pred CCCCEEEEEEEEEEEC-CHHHHHHHHHHHhh
Confidence 5679999998876653 45556555555544
No 27
>PRK04998 hypothetical protein; Provisional
Probab=46.77 E-value=15 Score=19.53 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=19.9
Q ss_pred CCCCchhhhhhhhcccCChHHHHHHHHHhhhh
Q psy11415 6 PRHGKYMACCMLYRGDVVPKDVNSAIATIKTK 37 (70)
Q Consensus 6 ~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~ 37 (70)
.+.|+|.|..+.++- .+..++.+....++..
T Consensus 51 S~~GkY~Svtv~v~v-~s~eq~~~iY~~L~~~ 81 (88)
T PRK04998 51 SSKGNYHSVSITITA-TSIEQVETLYEELAKI 81 (88)
T ss_pred CCCCEEEEEEEEEEE-CCHHHHHHHHHHHhcC
Confidence 566899988865443 3556666666666543
No 28
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=42.69 E-value=27 Score=18.67 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=19.6
Q ss_pred hhcccCChHHHHHHHHHhhh---hccccccc
Q psy11415 17 LYRGDVVPKDVNSAIATIKT---KRTIQFVD 44 (70)
Q Consensus 17 ~~rG~~~~~~i~~~i~~~~~---~~~~~f~~ 44 (70)
--||-.-+.+|.+++.+|.+ ++++.|.+
T Consensus 40 keRgG~IP~~V~~sl~kL~~La~~N~v~fee 70 (82)
T PF11020_consen 40 KERGGQIPEKVMDSLSKLYKLAKENNVSFEE 70 (82)
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 35787778888888877753 56666654
No 29
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=40.42 E-value=22 Score=15.42 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhccccccccCCcc
Q psy11415 26 DVNSAIATIKTKRTIQFVDWCPTG 49 (70)
Q Consensus 26 ~i~~~i~~~~~~~~~~f~~W~p~~ 49 (70)
+|+.++.+ ++.-+|..|.-+.
T Consensus 4 QI~~a~~~---~~~~NFSaWV~dA 24 (30)
T PF13132_consen 4 QIEIALEQ---EGSGNFSAWVKDA 24 (30)
T ss_pred HHHHHHHh---ccCcChHHHHHHH
Confidence 45555443 4568899996543
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=37.16 E-value=37 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHhhhhccccccccCCcc
Q psy11415 22 VVPKDVNSAIATIKTKRTIQFVDWCPTG 49 (70)
Q Consensus 22 ~~~~~i~~~i~~~~~~~~~~f~~W~p~~ 49 (70)
....+|.+|++.++....-.|.-|+|++
T Consensus 287 Yg~~ev~aQI~A~~d~g~~~~llWna~n 314 (316)
T PF13200_consen 287 YGPEEVRAQIQALKDAGIEGWLLWNASN 314 (316)
T ss_pred cCHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 5788999999999988778899999875
No 31
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=35.65 E-value=31 Score=17.39 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.3
Q ss_pred ccccCCcceeEEEe
Q psy11415 42 FVDWCPTGFKVGIN 55 (70)
Q Consensus 42 f~~W~p~~~kv~~~ 55 (70)
..+|.|++++++..
T Consensus 39 ~~~~~P~~w~~a~s 52 (61)
T smart00810 39 VGNLIPSGFHLAAS 52 (61)
T ss_pred cCccCCCCCEEEEE
Confidence 35799999998765
No 32
>PF15601 Imm42: Immunity protein 42
Probab=34.22 E-value=89 Score=18.23 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=26.3
Q ss_pred hhhcccCChHHHHHHHHHhhh------hccccccccCCcceeEEEeccCCcc
Q psy11415 16 MLYRGDVVPKDVNSAIATIKT------KRTIQFVDWCPTGFKVGINYQPPTV 61 (70)
Q Consensus 16 ~~~rG~~~~~~i~~~i~~~~~------~~~~~f~~W~p~~~kv~~~~~~p~~ 61 (70)
.+|+|.....|+.++.+.+++ +....-+-|....+ ..+||-+
T Consensus 44 ~LY~g~L~~~~~~~A~~eL~~I~~~l~~~~p~~ViWD~~dl----~~~ppWg 91 (134)
T PF15601_consen 44 ELYRGYLRYEELEKALKELEEIRKELKKFPPSEVIWDIEDL----SKQPPWG 91 (134)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHhcCChhhheechhhc----ccCCCCc
Confidence 479999999998887666543 12223344766544 3566653
No 33
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=33.85 E-value=46 Score=21.25 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhccccccccCCcce
Q psy11415 26 DVNSAIATIKTKRTIQFVDWCPTGF 50 (70)
Q Consensus 26 ~i~~~i~~~~~~~~~~f~~W~p~~~ 50 (70)
|+...++.+|.+-+-.-+||.|.+-
T Consensus 30 DFMSLlK~LQ~~LTc~~~PW~P~~~ 54 (232)
T PF11251_consen 30 DFMSLLKALQRDLTCTSVPWVPPGD 54 (232)
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCCC
Confidence 5666777887765555579999754
No 34
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=32.72 E-value=92 Score=18.61 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=28.5
Q ss_pred chhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCc-ceeE
Q psy11415 10 KYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPT-GFKV 52 (70)
Q Consensus 10 ~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~-~~kv 52 (70)
.+-..+-..++.++..++.+++..|.+ ..|+.+.-+ .+..
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~---~gli~k~~~g~y~~ 81 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEK---LGLIKKDGDGKYVQ 81 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHH---CCCeEECCCCcEEE
Confidence 344455556778999999999998865 677777666 4443
No 35
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=31.88 E-value=48 Score=16.70 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=21.1
Q ss_pred hhcc--cCChHHHHHHHHHhhhhccccccccCCc
Q psy11415 17 LYRG--DVVPKDVNSAIATIKTKRTIQFVDWCPT 48 (70)
Q Consensus 17 ~~rG--~~~~~~i~~~i~~~~~~~~~~f~~W~p~ 48 (70)
-+|| +++.+||...+..--.......++|+=+
T Consensus 9 hirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdD 42 (62)
T PF10309_consen 9 HIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDD 42 (62)
T ss_pred EEEcCCCCCHHHHHHHHHHhcccCCCceEEEecC
Confidence 3577 4888898887665422334667889765
No 36
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.43 E-value=35 Score=22.72 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.8
Q ss_pred CcceeEEEeccCCccccCCCCc
Q psy11415 47 PTGFKVGINYQPPTVVPGGDLR 68 (70)
Q Consensus 47 p~~~kv~~~~~~p~~~~~~~l~ 68 (70)
..|+.+.+|..||...+.+..-
T Consensus 212 ~~gl~I~v~hyPP~tSKwN~IE 233 (311)
T PF07592_consen 212 ETGLSIRVCHYPPGTSKWNPIE 233 (311)
T ss_pred HhCCEEEEEEcCCCcccccchh
Confidence 3568899999999988887644
No 37
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=30.92 E-value=17 Score=20.71 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=10.7
Q ss_pred cccccccCCcceeE
Q psy11415 39 TIQFVDWCPTGFKV 52 (70)
Q Consensus 39 ~~~f~~W~p~~~kv 52 (70)
.+-|+.|+|++-++
T Consensus 72 klvFI~w~Pd~a~i 85 (122)
T PTZ00152 72 KIHFFMYARESSNS 85 (122)
T ss_pred CEEEEEECCCCCCh
Confidence 35689999998754
No 38
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=28.77 E-value=32 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=18.3
Q ss_pred CCCchhhhhhhhcccCChHHHHHHHHHh
Q psy11415 7 RHGKYMACCMLYRGDVVPKDVNSAIATI 34 (70)
Q Consensus 7 ~~g~~ls~~~~~rG~~~~~~i~~~i~~~ 34 (70)
+.|.+.++.++.+|.++..|+.+.+.+.
T Consensus 111 RSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 111 RAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456667777778878776666655443
No 39
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.63 E-value=59 Score=19.29 Aligned_cols=28 Identities=11% Similarity=0.366 Sum_probs=20.3
Q ss_pred hhcccCChHHHHHHHHHhhhhcccccccc
Q psy11415 17 LYRGDVVPKDVNSAIATIKTKRTIQFVDW 45 (70)
Q Consensus 17 ~~rG~~~~~~i~~~i~~~~~~~~~~f~~W 45 (70)
+.+|+++..|..+.+++++.+. ..+..|
T Consensus 77 ~~~~~~~~~ea~~~L~~I~~~~-~~y~~~ 104 (193)
T PF06738_consen 77 IVAGQLSLEEAIERLDEIDREP-PRYPPW 104 (193)
T ss_pred HhcCCCCHHHHHHHHHHHhhCC-CCCCHH
Confidence 3458899999999999986542 245555
No 40
>KOG0268|consensus
Probab=27.70 E-value=14 Score=25.41 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=28.4
Q ss_pred ccCCCCchhhhhhhhccc--CChHHHHHHHHHhhhhccccccccCCcceeEEE
Q psy11415 4 CDPRHGKYMACCMLYRGD--VVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGI 54 (70)
Q Consensus 4 ~~~~~g~~ls~~~~~rG~--~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~ 54 (70)
.+|.....|+++..-|+- .+.++ ...+.++-.....+-++|+|.+|....
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRTN~IswnPeafnF~~ 246 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRTNTICWNPEAFNFVA 246 (433)
T ss_pred cCCCcchheeeeccCCceEEEeccc-CCccceeeeeccccceecCccccceee
Confidence 456656667766555552 12221 122334434455788999999987543
No 41
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=27.02 E-value=1.2e+02 Score=16.87 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=23.4
Q ss_pred hhhcccCChHHHHHHHHHhhhhcccccc---ccCCcceeEEEe
Q psy11415 16 MLYRGDVVPKDVNSAIATIKTKRTIQFV---DWCPTGFKVGIN 55 (70)
Q Consensus 16 ~~~rG~~~~~~i~~~i~~~~~~~~~~f~---~W~p~~~kv~~~ 55 (70)
-.|+|++.+-||.+.+.+-...+..... -..||.+.|.+.
T Consensus 18 r~F~~~vqPvEIa~~L~remd~~a~~~~~~r~~aPN~y~V~Ls 60 (116)
T PF12401_consen 18 RVFRSEVQPVEIAKALRREMDDQARVVSRGRTLAPNVYTVELS 60 (116)
T ss_dssp HHHTTSS-THHHHHHHHHHHHHT-B---TT--B---EEEEEEE
T ss_pred HhcCCCCcHHHHHHHHHHHHHhCCeecCCCCEEcCeeEEEEEC
Confidence 3688999999999998876554311111 146888888765
No 42
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=26.67 E-value=1.1e+02 Score=16.92 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=22.7
Q ss_pred hcccCChHH-HHHHHHHhhhh-cccccccc-CCcc--eeEEEeccCCc
Q psy11415 18 YRGDVVPKD-VNSAIATIKTK-RTIQFVDW-CPTG--FKVGINYQPPT 60 (70)
Q Consensus 18 ~rG~~~~~~-i~~~i~~~~~~-~~~~f~~W-~p~~--~kv~~~~~~p~ 60 (70)
+.|.+..++ ..+.......+ +....++| .++. |++.+ ++||.
T Consensus 61 i~g~v~ek~~A~~~y~~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~ 107 (118)
T PF08487_consen 61 IEGEVKEKEEAKQEYEEAVAQGKSAALLEQSDPNVEVFTVSV-NIPPN 107 (118)
T ss_pred EEEEEecHHHHHHHHHHHHHcCCCchhhcccCCCCcEEEEEE-EeCCC
Confidence 344444443 44444444333 33334444 4556 89999 99885
No 43
>COG4493 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.98 E-value=1.3e+02 Score=18.80 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=35.9
Q ss_pred ccCCCCchhhhhhhhccc---------------------CChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccc
Q psy11415 4 CDPRHGKYMACCMLYRGD---------------------VVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVV 62 (70)
Q Consensus 4 ~~~~~g~~ls~~~~~rG~---------------------~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~ 62 (70)
++|....|.|.+.--||. +......+...++-.++......-.|+.|.++.--.-|...
T Consensus 65 vNpP~dTW~Afa~skRGYKklpHFQiGlwE~~lFvwfaiiye~~~k~~~a~~l~k~~~~i~~~lpd~f~is~DHtkp~t~ 144 (209)
T COG4493 65 VNPPEDTWVAFATSKRGYKKLPHFQIGLWEDYLFVWFAIIYESKKKKEYANLLEKKSKAIEKNLPDDFVISKDHTKPDTY 144 (209)
T ss_pred CCCCchhHHHHhhcccccccCcceeechhhhhhhhhhhhhhcchHHHHHHHHHHHhHHHHHhcCCcceEeccccCCCCCC
Confidence 456666777777777773 12223334444443332223334478888887776667777
Q ss_pred cCCC
Q psy11415 63 PGGD 66 (70)
Q Consensus 63 ~~~~ 66 (70)
+.++
T Consensus 145 ~~se 148 (209)
T COG4493 145 PISE 148 (209)
T ss_pred Cccc
Confidence 7555
No 44
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=71 Score=20.30 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhhhhccccccccCCcceeEEE
Q psy11415 24 PKDVNSAIATIKTKRTIQFVDWCPTGFKVGI 54 (70)
Q Consensus 24 ~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~ 54 (70)
..|+.+.+.++... ..+.+|.++|++++=
T Consensus 3 ~~el~~~le~~~p~--~~a~d~d~~GLqv~~ 31 (250)
T COG0327 3 VSELIELLEEFLPP--ELAEDWDNNGLQVGG 31 (250)
T ss_pred HHHHHHHHHhhcCH--HHhhccCcceEEeCC
Confidence 45666666655443 334589999998754
No 45
>PF06366 FlhE: Flagellar protein FlhE; InterPro: IPR009420 This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown [].; GO: 0019861 flagellum
Probab=25.64 E-value=60 Score=18.14 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.5
Q ss_pred ccccccCCcceeEEEeccC
Q psy11415 40 IQFVDWCPTGFKVGINYQP 58 (70)
Q Consensus 40 ~~f~~W~p~~~kv~~~~~~ 58 (70)
.++..+.|.++++-+|...
T Consensus 36 y~l~~~~P~gL~v~LC~~~ 54 (106)
T PF06366_consen 36 YQLLSPPPAGLQVRLCSPT 54 (106)
T ss_pred EEECCCCCCCeEEEecCCC
Confidence 4566778999999999865
No 46
>KOG0272|consensus
Probab=25.16 E-value=46 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=14.2
Q ss_pred cccccccCCcceeEEEec
Q psy11415 39 TIQFVDWCPTGFKVGINY 56 (70)
Q Consensus 39 ~~~f~~W~p~~~kv~~~~ 56 (70)
.+.-+.|.|+|++++-|.
T Consensus 347 ~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGS 364 (459)
T ss_pred ceeeEeECCCceEEeecC
Confidence 466689999999987553
No 47
>PF12161 HsdM_N: HsdM N-terminal domain; InterPro: IPR022749 This domain is found at the N terminus of the methylase subunit of Type I DNA methyltransferases. This domain is found in bacteria and archaea, and is typically between 123 and 138 amino acids in length. It is found in association with PF02384 from PFAM. Mutations in this region of EcoKI methyltransferase P08957 from SWISSPROT abolish the normally strong preference of this system for methylating hemimethylated substrate []. The structure of this domain has been shown to be all alpha-helical. This entry is also found in restriction endonucleases in conjuntion with the R and S subunits.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity; PDB: 3LKD_A 2OKC_B 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A.
Probab=24.26 E-value=79 Score=17.39 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=14.2
Q ss_pred hhhhhhhcccCChHHHHHHHH
Q psy11415 12 MACCMLYRGDVVPKDVNSAIA 32 (70)
Q Consensus 12 ls~~~~~rG~~~~~~i~~~i~ 32 (70)
-.++..+||.+++.+..+.+.
T Consensus 6 w~~ad~LRg~~~~~~y~~~il 26 (137)
T PF12161_consen 6 WNIADILRGDIDASEYKDYIL 26 (137)
T ss_dssp HHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHhhchhh
Confidence 356778899888888766543
No 48
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=22.77 E-value=60 Score=16.33 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=14.5
Q ss_pred ccccccccCCcceeEEEe
Q psy11415 38 RTIQFVDWCPTGFKVGIN 55 (70)
Q Consensus 38 ~~~~f~~W~p~~~kv~~~ 55 (70)
....|.-|.|..-+|.|+
T Consensus 11 ~~~~F~vwaP~A~~V~l~ 28 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELV 28 (85)
T ss_dssp TEEEEEEE-TTESEEEEE
T ss_pred CEEEEEEECCCCCEEEEE
Confidence 468899999999998886
No 49
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=22.52 E-value=49 Score=24.75 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=24.5
Q ss_pred hhhcc--cCChHHHHHHHHHhhhhccccccccC
Q psy11415 16 MLYRG--DVVPKDVNSAIATIKTKRTIQFVDWC 46 (70)
Q Consensus 16 ~~~rG--~~~~~~i~~~i~~~~~~~~~~f~~W~ 46 (70)
+.|+| .++..|+.++..+++.+.+..|..|.
T Consensus 665 M~f~~~s~vt~~dl~~A~~~V~~~E~~~~~~~l 697 (788)
T PRK15387 665 MRFFDVSGVTVTDLQDAELQVKAAEKSEFREWI 697 (788)
T ss_pred CeeccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 48899999999999877778888875
No 50
>PLN03216 actin depolymerizing factor; Provisional
Probab=22.50 E-value=26 Score=20.21 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=10.4
Q ss_pred ccccccccCCccee
Q psy11415 38 RTIQFVDWCPTGFK 51 (70)
Q Consensus 38 ~~~~f~~W~p~~~k 51 (70)
..+-|+.|+|++-+
T Consensus 85 ~klvFI~w~Pd~a~ 98 (141)
T PLN03216 85 SKIFFIAWSPEASR 98 (141)
T ss_pred cCEEEEEECCCCCC
Confidence 34678899998764
No 51
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=22.15 E-value=1.8e+02 Score=17.44 Aligned_cols=47 Identities=11% Similarity=0.388 Sum_probs=36.1
Q ss_pred CCchhhhhhhhcccCChHHHHHHHHHhhhh-ccccccccCCcceeEEE
Q psy11415 8 HGKYMACCMLYRGDVVPKDVNSAIATIKTK-RTIQFVDWCPTGFKVGI 54 (70)
Q Consensus 8 ~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~-~~~~f~~W~p~~~kv~~ 54 (70)
+.-|+.+++..+...++.|..+.++++..+ ....-..|.|..+-+-+
T Consensus 51 Q~~FlN~v~~v~T~L~p~eLL~~l~~iE~~~gR~R~~rwgPRtlDlDI 98 (160)
T COG0801 51 QPDFLNAVVEVETTLSPRELLARLQAIERRLGRVRSERWGPRTLDLDI 98 (160)
T ss_pred CcchheEEEEEeccCCHHHHHHHHHHHHHHcCccccccCCCcceeeEE
Confidence 457899998888899999999988887543 23445679999886543
No 52
>KOG4497|consensus
Probab=21.62 E-value=52 Score=22.58 Aligned_cols=42 Identities=19% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCchhhhhhhhcc---cCChHHHHHHHHHhhhhccccccccCCcceeE
Q psy11415 8 HGKYMACCMLYRG---DVVPKDVNSAIATIKTKRTIQFVDWCPTGFKV 52 (70)
Q Consensus 8 ~g~~ls~~~~~rG---~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv 52 (70)
.|+|+|++.=||= +...-++.....-+ +.+..++|.-++.++
T Consensus 19 ~g~yiAs~~~yrlviRd~~tlq~~qlf~cl---dki~yieW~ads~~i 63 (447)
T KOG4497|consen 19 CGNYIASLSRYRLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHI 63 (447)
T ss_pred CCCeeeeeeeeEEEEeccchhhHHHHHHHH---HHhhheeeeccceee
Confidence 3899999876653 22333333333333 237889998877653
No 53
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.30 E-value=1.4e+02 Score=15.60 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=18.7
Q ss_pred hhhhhhcccCChHHHHHHHHHhhhh
Q psy11415 13 ACCMLYRGDVVPKDVNSAIATIKTK 37 (70)
Q Consensus 13 s~~~~~rG~~~~~~i~~~i~~~~~~ 37 (70)
+..-+-||+.++.|..+.+...+.+
T Consensus 23 ALmwiGRGd~~~eew~~a~~~A~~~ 47 (75)
T PF12616_consen 23 ALMWIGRGDFEAEEWEEAVAEARER 47 (75)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 3444668899999999988776554
No 54
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=21.22 E-value=35 Score=18.88 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=10.0
Q ss_pred cccccccCCcceeE
Q psy11415 39 TIQFVDWCPTGFKV 52 (70)
Q Consensus 39 ~~~f~~W~p~~~kv 52 (70)
..-|+.|+|++.++
T Consensus 78 k~vfI~w~P~~a~~ 91 (132)
T cd00013 78 KIVFIYWSPETAPV 91 (132)
T ss_pred CEEEEEECCCCCCh
Confidence 35688899986653
No 55
>KOG3363|consensus
Probab=20.43 E-value=55 Score=20.06 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=26.4
Q ss_pred CCCCchhhhhhhhcccCChHHHHHHHHHhhhh
Q psy11415 6 PRHGKYMACCMLYRGDVVPKDVNSAIATIKTK 37 (70)
Q Consensus 6 ~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~ 37 (70)
..+|+|.+++++=-|..+.+|-.+.+..++..
T Consensus 159 NaEgR~VaaAL~Pp~v~s~~e~~~~~a~lk~~ 190 (196)
T KOG3363|consen 159 NAEGRYVAAALLPPGVTSDKEYGRALALLKGW 190 (196)
T ss_pred cccccEEEEEecCCcccccchhhHHHHHhhcc
Confidence 45689999998877989999988888888764
No 56
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=20.27 E-value=59 Score=14.76 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=18.8
Q ss_pred chhhhhhhhcccCChHHHHHHHHHhh
Q psy11415 10 KYMACCMLYRGDVVPKDVNSAIATIK 35 (70)
Q Consensus 10 ~~ls~~~~~rG~~~~~~i~~~i~~~~ 35 (70)
-.+|..++.|-+-..+++.+++..+.
T Consensus 10 i~va~yLL~R~E~kld~L~~~i~~L~ 35 (38)
T PF12841_consen 10 IAVAIYLLVRIEKKLDELTESINELS 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778887767777778877764
No 57
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=20.17 E-value=64 Score=18.04 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.5
Q ss_pred hhhhcccCChHHHHHHHHHh
Q psy11415 15 CMLYRGDVVPKDVNSAIATI 34 (70)
Q Consensus 15 ~~~~rG~~~~~~i~~~i~~~ 34 (70)
.++++|.++++++++.+.+.
T Consensus 57 rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 57 RLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred eEEEEEeeCHHHHHHHHHHH
Confidence 45788999999999988765
No 58
>PRK10799 metal-binding protein; Provisional
Probab=20.15 E-value=1.1e+02 Score=19.21 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhccccccccCCcceeEE
Q psy11415 25 KDVNSAIATIKTKRTIQFVDWCPTGFKVG 53 (70)
Q Consensus 25 ~~i~~~i~~~~~~~~~~f~~W~p~~~kv~ 53 (70)
.|+.+.+..+-. ...+.+|.++|+.++
T Consensus 4 ~~~~~~~~~~~~--~~~~~~wd~~Gl~v~ 30 (247)
T PRK10799 4 TELEQLINEKLN--SAAISDYAPNGLQVE 30 (247)
T ss_pred HHHHHHHHhhcC--HhhhccCCCceeEeC
Confidence 456565555433 245678999999875
No 59
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=20.09 E-value=1.1e+02 Score=19.53 Aligned_cols=28 Identities=11% Similarity=0.470 Sum_probs=20.6
Q ss_pred hhcccCChHHHHHHHHHhhhhcccccccc
Q psy11415 17 LYRGDVVPKDVNSAIATIKTKRTIQFVDW 45 (70)
Q Consensus 17 ~~rG~~~~~~i~~~i~~~~~~~~~~f~~W 45 (70)
+.+|+++.+|.++.+.++.. +..++..|
T Consensus 99 v~~~~~~~e~a~~~l~~i~~-~~~~y~~~ 126 (250)
T COG2966 99 VEHGRLDLEEAHKKLDEIQK-QPLRYSRW 126 (250)
T ss_pred HHcCCCCHHHHHHHHHHhhh-CccccccH
Confidence 45678899999999988853 34566666
Done!