RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11415
(70 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 139 bits (351), Expect = 1e-41
Identities = 64/67 (95%), Positives = 67/67 (100%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61 VVPGGDL 67
VVPGGDL
Sbjct: 362 VVPGGDL 368
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 124 bits (312), Expect = 9e-36
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 1 MVKCDPRHGK---YMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQ 57
MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ +
Sbjct: 304 MVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRK 363
Query: 58 PPTVVPGGDL 67
P + +
Sbjct: 364 SPYLPSAHRV 373
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 122 bits (308), Expect = 2e-35
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR 359
Query: 61 VVP 63
+
Sbjct: 360 GLK 362
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 115 bits (290), Expect = 1e-32
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
C P G++++ +LYRG + K + A A + + W PT FK+G QP
Sbjct: 306 FAACSPMEGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGI 364
Query: 61 VVP 63
Sbjct: 365 SHR 367
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 115 bits (289), Expect = 1e-32
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPT--GFKVGINYQP 58
D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETA 357
Query: 59 PTVVPGGDL 67
P L
Sbjct: 358 PEGFASSGL 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 8e-04
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 42/101 (41%)
Query: 8 H--GKYMA-CCM-----------L--YRG----DVVPKD-----------VN-SAIATIK 35
H G+Y A + + YRG VP+D +N +A
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 36 TKRTIQFVDWC-----PTGFKVGI-NYQPP--TVVPGGDLR 68
++ +Q+V TG+ V I NY V GDLR
Sbjct: 1822 SQEALQYV--VERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.37
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 8/25 (32%)
Query: 17 LYRGDVVPKDVNSAIATIKTKRTIQ 41
LY D P A+A IK T++
Sbjct: 31 LYADDSAP-----ALA-IKA--TME 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 26.8 bits (60), Expect = 0.53
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDW 45
+ C KY LY ++ + +I K K T +
Sbjct: 336 MDCQSEEHKYNVLVELY--GLL--TIGQSIIFCKKKDT---AEE 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.485
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,126,772
Number of extensions: 50142
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 8
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)